BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3226
(111 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WSP|A Chain A, Crystal Structure Of Axin Dix Domain
pdb|1WSP|B Chain B, Crystal Structure Of Axin Dix Domain
pdb|1WSP|C Chain C, Crystal Structure Of Axin Dix Domain
Length = 84
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 55/80 (68%)
Query: 25 TTVVFTFCDEQYPYRTKIPSQSVTLKQFKDYLPKKGNYRFFFKTECDDVDTKVIQEEIVD 84
V + FC E PYRT + ++VTL QFK+ L KKG+YR++FK D+ D V+ EE+ +
Sbjct: 5 IVVAYYFCGEPIPYRTLVRGRAVTLGQFKELLTKKGSYRYYFKKVSDEFDCGVVFEEVRE 64
Query: 85 DNEVLPLWEGKVMGQVKPLE 104
D +LP++E K++G+V+ ++
Sbjct: 65 DEAILPVFEEKIIGKVEKVD 84
>pdb|2D5G|A Chain A, Structure Of Ubiquitin Fold Protein R767e Mutant
pdb|2D5G|B Chain B, Structure Of Ubiquitin Fold Protein R767e Mutant
pdb|2D5G|C Chain C, Structure Of Ubiquitin Fold Protein R767e Mutant
pdb|2D5G|D Chain D, Structure Of Ubiquitin Fold Protein R767e Mutant
pdb|2D5G|E Chain E, Structure Of Ubiquitin Fold Protein R767e Mutant
pdb|2D5G|F Chain F, Structure Of Ubiquitin Fold Protein R767e Mutant
Length = 85
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 54/80 (67%)
Query: 25 TTVVFTFCDEQYPYRTKIPSQSVTLKQFKDYLPKKGNYRFFFKTECDDVDTKVIQEEIVD 84
V + FC E PY T + ++VTL QFK+ L KKG+YR++FK D+ D V+ EE+ +
Sbjct: 6 IVVAYYFCGEPIPYETLVRGRAVTLGQFKELLTKKGSYRYYFKKVSDEFDCGVVFEEVRE 65
Query: 85 DNEVLPLWEGKVMGQVKPLE 104
D +LP++E K++G+V+ ++
Sbjct: 66 DEAILPVFEEKIIGKVEKVD 85
>pdb|3PZ7|A Chain A, Crystal Structure Of Ccd1-Dix Domain
Length = 91
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 52/92 (56%), Gaps = 6/92 (6%)
Query: 19 HQSGTFTTVVFTFCDEQY-PYRTKIPS--QSVTLKQFKDYLPKKGNYRFFFKTECDDVDT 75
H S T T V++ F D P+ IP + VTLK FK + ++GN+R+ FK D +
Sbjct: 3 HXSSTCTKVLY-FTDRSLTPFXVNIPKRLEEVTLKDFKAAIDREGNHRYHFKAM--DPEF 59
Query: 76 KVIQEEIVDDNEVLPLWEGKVMGQVKPLENEN 107
++EEI D++ +P WEGK++ V+ EN
Sbjct: 60 GTVKEEIFHDDDAIPGWEGKIVAWVEEDHGEN 91
>pdb|3PZ8|A Chain A, Crystal Structure Of Dvl1-Dix(Y17d) Mutant
pdb|3PZ8|B Chain B, Crystal Structure Of Dvl1-Dix(Y17d) Mutant
pdb|3PZ8|C Chain C, Crystal Structure Of Dvl1-Dix(Y17d) Mutant
pdb|3PZ8|D Chain D, Crystal Structure Of Dvl1-Dix(Y17d) Mutant
pdb|3PZ8|E Chain E, Crystal Structure Of Dvl1-Dix(Y17d) Mutant
pdb|3PZ8|F Chain F, Crystal Structure Of Dvl1-Dix(Y17d) Mutant
pdb|3PZ8|G Chain G, Crystal Structure Of Dvl1-Dix(Y17d) Mutant
pdb|3PZ8|H Chain H, Crystal Structure Of Dvl1-Dix(Y17d) Mutant
Length = 106
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 45/77 (58%), Gaps = 6/77 (7%)
Query: 25 TTVVFTFCDEQYPYRTKIP--SQSVTLKQFKDYLPKK--GNYRFFFKTECDDVDTKVIQE 80
T +++ +E+ P K+P + VTL FK+ L + Y+FFFK+ D D V++E
Sbjct: 6 TKIIYHMDEEETPDLVKLPVAPERVTLADFKNVLSNRPVHAYKFFFKSM--DQDFGVVKE 63
Query: 81 EIVDDNEVLPLWEGKVM 97
EI DDN LP + G+V+
Sbjct: 64 EIFDDNAKLPCFNGRVV 80
>pdb|4GWB|A Chain A, Crystal Structure Of Putative Peptide Methionine Sulfoxide
Reductase From Sinorhizobium Meliloti 1021
Length = 168
Score = 28.9 bits (63), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 72 DVDTKVIQEEIVDDNEVLPLWEGKVMGQVKPLEN 105
D + K I +E + D E LW GKV+ +V+P+ +
Sbjct: 98 DDEQKRIAQETIADVEASGLWPGKVVTEVEPVRD 131
>pdb|1M07|A Chain A, Residues Involved In The Catalysis And Base Specificity Of
Cytotoxic Ribonuclease From Bullfrog (Rana Catesbeiana)
pdb|1M07|B Chain B, Residues Involved In The Catalysis And Base Specificity Of
Cytotoxic Ribonuclease From Bullfrog (Rana Catesbeiana)
pdb|1KM8|A Chain A, The Structure Of A Cytotoxic Ribonuclease From The Oocyte
Of Rana Catesbeiana (Bullfrog)
pdb|1KM9|A Chain A, The Structure Of A Cytotoxic Ribonuclease From The Oocyte
Of Rana Catesbeiana (Bullfrog)
pdb|1BC4|A Chain A, The Solution Structure Of A Cytotoxic Ribonuclease From
The Oocytes Of Rana Catesbeiana (Bullfrog), Nmr, 15
Structures
Length = 111
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 3 NSCTLRSVTSTPRPPEHQSGTFTTVVFTFCDEQYP 37
N+CT S+T PRP + S T T + C+ QYP
Sbjct: 69 NTCTRTSIT--PRPCPYSSRTETNYICVKCENQYP 101
>pdb|3J20|T Chain T, Promiscuous Behavior Of Proteins In Archaeal Ribosomes
Revealed By Cryo-em: Implications For Evolution Of
Eukaryotic Ribosomes (30s Ribosomal Subunit)
Length = 132
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 22/76 (28%)
Query: 43 PSQSVTLKQFKDYLPKKGNYRFFFKTECDDVDTKVIQEEIV-------DDNEVLPLWEGK 95
P Q L++ + L KKG Y+ +T C D+ +I E+V + E +P+
Sbjct: 42 PEQKKLLRKIR--LAKKGKYKKPIRTHCRDM---IILPEMVGLTIYVHNGKEFVPV---- 92
Query: 96 VMGQVKPLENENMGHY 111
++KP E +GHY
Sbjct: 93 ---EIKP---EMIGHY 102
>pdb|1AQE|A Chain A, Crystal Structure Of The Y73e Mutant Of Cytochrome C Of
Class Iii (Ambler) 26 Kd
Length = 111
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Query: 41 KIPSQSVTL--KQFKDYLPKKGNYRFFFKTECD 71
+IP +SVT+ KQF+ Y PKKG+ F + D
Sbjct: 4 EIP-ESVTMSPKQFEGYTPKKGDVTFNHASHMD 35
>pdb|1CZJ|A Chain A, Cytochrome C Of Class Iii (Ambler) 26 Kd
Length = 111
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Query: 41 KIPSQSVTL--KQFKDYLPKKGNYRFFFKTECD 71
+IP +SVT+ KQF+ Y PKKG+ F + D
Sbjct: 4 EIP-ESVTMSPKQFEGYTPKKGDVTFNHASHMD 35
>pdb|2OT9|A Chain A, Crystal Structure Of Yaeq Protein From Pseudomonas
Syringae
Length = 180
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 89 LPLWEGKVMGQVKPLENENMG 109
L +WEGKV+ +K L+N N+
Sbjct: 110 LRVWEGKVIPAIKNLKNVNIA 130
>pdb|3UAQ|A Chain A, Crystal Structure Of The N-Lobe Domain Of Lactoferrin
Binding Protein B (Lbpb) Of Moraxella Bovis
pdb|3UAQ|B Chain B, Crystal Structure Of The N-Lobe Domain Of Lactoferrin
Binding Protein B (Lbpb) Of Moraxella Bovis
Length = 341
Score = 25.0 bits (53), Expect = 10.0, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 41 KIPSQSVTLKQFKDYLPKKGNYRFFFKTECD 71
++ + S + F Y P++GN+R FK + D
Sbjct: 215 EVGATSFAEQVFGQYAPRQGNHRAVFKADFD 245
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,578,594
Number of Sequences: 62578
Number of extensions: 133994
Number of successful extensions: 255
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 246
Number of HSP's gapped (non-prelim): 12
length of query: 111
length of database: 14,973,337
effective HSP length: 75
effective length of query: 36
effective length of database: 10,279,987
effective search space: 370079532
effective search space used: 370079532
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)