Query psy3226
Match_columns 111
No_of_seqs 104 out of 141
Neff 4.3
Searched_HMMs 46136
Date Fri Aug 16 19:36:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3226.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3226hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00778 DIX: DIX domain; Int 100.0 1E-39 2.2E-44 223.9 10.3 81 23-104 2-84 (84)
2 smart00021 DAX Domain present 100.0 1E-39 2.2E-44 224.3 9.0 80 23-104 2-83 (83)
3 KOG3571|consensus 100.0 2.7E-29 5.8E-34 216.7 3.7 85 22-109 9-96 (626)
4 PF06136 DUF966: Domain of unk 96.0 0.023 5E-07 47.4 6.7 72 26-100 2-85 (337)
5 PF08783 DWNN: DWNN domain; I 90.3 0.54 1.2E-05 31.7 4.0 67 27-98 1-71 (74)
6 PF02192 PI3K_p85B: PI3-kinase 55.5 15 0.00034 24.8 2.9 39 45-89 8-59 (78)
7 PF10860 DUF2661: Protein of u 50.6 9.6 0.00021 27.9 1.4 33 24-59 34-68 (113)
8 PF09447 Cnl2_NKP2: Cnl2/NKP2 50.0 8.7 0.00019 25.5 1.0 15 45-59 18-32 (67)
9 COG3422 Uncharacterized conser 44.2 11 0.00023 24.8 0.7 20 50-69 3-22 (59)
10 smart00143 PI3K_p85B PI3-kinas 43.4 24 0.00053 24.0 2.4 42 44-89 7-59 (78)
11 PF15492 Nbas_N: Neuroblastoma 35.9 2.6E+02 0.0057 23.4 7.9 77 22-101 178-258 (282)
12 cd01237 Unc112 Unc-112 pleckst 33.0 43 0.00093 24.0 2.4 28 42-69 10-38 (106)
13 cd05992 PB1 The PB1 domain is 32.2 82 0.0018 19.6 3.5 56 27-88 3-61 (81)
14 KOG3312|consensus 30.3 25 0.00055 27.4 0.9 12 90-101 107-118 (186)
15 COG3443 Predicted periplasmic 22.7 90 0.0019 24.7 2.7 30 61-92 121-150 (193)
16 smart00666 PB1 PB1 domain. Pho 22.3 1.3E+02 0.0028 18.8 3.1 53 30-89 7-62 (81)
17 PF06442 DHFR_2: R67 dihydrofo 22.2 38 0.00083 23.0 0.6 11 90-100 36-46 (78)
No 1
>PF00778 DIX: DIX domain; InterPro: IPR001158 Dishevelled (Dsh) protein is an important component of the Wnt signal-transduction pathway. It has three relatively conserved domains: DIX, PDZ and DEP. The DIX domain of Dvl-1 (a mammalian Dishevelled homologue) shares 37% identity with the C-terminal region of Axin. Dsh can interact with the Axin/APC/GSK3/beta-catenin complex, and may thus modulate its activity []. The Wnt signalling pathway is conserved in various species from Caenorhabditis elegans to mammals, and plays important roles in development, cellular proliferation, and differentiation. The molecular mechanisms by which the Wnt signal regulates cellular functions are becoming increasingly well understood. Wnt stabilises cytoplasmic beta-catenin, which stimulates the expression of genes including c-myc, c-jun, fra-1, and cyclin D1. Axin and its homologue Axil are components of the Wnt signalling pathway that negatively regulate this pathway. Other components of the Wnt signalling pathway, including Dvl, glycogen synthase kinase-3beta (GSK-3beta), beta-catenin, and adenomatous polyposis coli (APC), interact with Axin, and the phosphorylation and stability of beta-catenin are regulated in the Axin complex. Axil has similar functions to Axin. Thus, Axin and Axil act as scaffold proteins in the Wnt signalling pathway, thereby modulating the Wnt-dependent cellular functions [].; GO: 0004871 signal transducer activity, 0007275 multicellular organismal development, 0005622 intracellular; PDB: 1WSP_B 2D5G_A 3PZ7_A 3PZ8_H.
Probab=100.00 E-value=1e-39 Score=223.92 Aligned_cols=81 Identities=46% Similarity=0.861 Sum_probs=66.3
Q ss_pred CeeEEEEEECCCCceeeeeeCCCC--CChHHHhccCCCCCceeeeeeeeecCCCCceeEEEeccCCcceeccCCeEEEEE
Q psy3226 23 TFTTVVFTFCDEQYPYRTKIPSQS--VTLKQFKDYLPKKGNYRFFFKTECDDVDTKVIQEEIVDDNEVLPLWEGKVMGQV 100 (111)
Q Consensus 23 ~~t~V~Y~~~dE~~PY~~~IP~~~--iTL~dFK~~l~kkgnyryfFK~~~~D~d~g~VkeEI~dD~~~LP~~eGkIva~v 100 (111)
++|+|+||+|||++||+++||.++ |||||||++|+|+||||||||++|+|.++ +||+||+||+++||+|||||+|||
T Consensus 2 ~~T~V~Y~~~~e~~Py~~~ip~~~~~iTL~dFK~~l~r~G~yrffFK~~~~d~~~-~V~eEi~dD~~~LP~~eGkI~~~v 80 (84)
T PF00778_consen 2 EETKVIYYIDDEETPYVVKIPKPPGEITLGDFKEVLPRPGNYRFFFKSLDPDFGC-VVKEEITDDDDILPLFEGKIVAKV 80 (84)
T ss_dssp SEEEEEEEETT-SS-EEEEESSSSTT-BHHHHHHTCTS-SGEEEEEEEEETTTET-EEEEEE-STTSB---BTTEEEEEE
T ss_pred CceEEEEEeCCCCCceEEEccCCCCccCHHHHHHhhcCCCCceEEEEEeCCCCCe-eeEEEEcCCcccccccCCEEEEEE
Confidence 679999999999999999999755 99999999999999999999999666555 999999999999999999999999
Q ss_pred EecC
Q psy3226 101 KPLE 104 (111)
Q Consensus 101 ~~~e 104 (111)
++++
T Consensus 81 ~~~d 84 (84)
T PF00778_consen 81 ESVD 84 (84)
T ss_dssp EE--
T ss_pred EeCC
Confidence 9875
No 2
>smart00021 DAX Domain present in Dishevelled and axin. Domain of unknown function.
Probab=100.00 E-value=1e-39 Score=224.26 Aligned_cols=80 Identities=41% Similarity=0.723 Sum_probs=74.6
Q ss_pred CeeEEEEEECCCCceeeeeeCCC--CCChHHHhccCCCCCceeeeeeeeecCCCCceeEEEeccCCcceeccCCeEEEEE
Q psy3226 23 TFTTVVFTFCDEQYPYRTKIPSQ--SVTLKQFKDYLPKKGNYRFFFKTECDDVDTKVIQEEIVDDNEVLPLWEGKVMGQV 100 (111)
Q Consensus 23 ~~t~V~Y~~~dE~~PY~~~IP~~--~iTL~dFK~~l~kkgnyryfFK~~~~D~d~g~VkeEI~dD~~~LP~~eGkIva~v 100 (111)
++|+|+||+|||+|||+++||.. +|||||||++|+|+ |||||||++++|++ |+|||||+||+++||+|||||+|||
T Consensus 2 ~~TkV~Y~~d~e~~PY~~~i~~~~~~iTLgdFK~~l~k~-~yry~FK~~d~df~-gvVkeEi~dD~~~LP~~eGkiv~~v 79 (83)
T smart00021 2 SETKVIYHLDDEETPYLVKVPVPAERVTLGDFKEVLTKK-NYKYYFKSMDDDFG-GVVKEEIRDDSARLPCFNGRVVSWL 79 (83)
T ss_pred CceEEEEEeCCCCCceeEecCCCcCceEHHHHHHhhccC-CcEEEEEecCcccC-CeeEEEEcCCcccccccCCEEEEEE
Confidence 57999999999999999999864 59999999999997 89999999966666 9999999999999999999999999
Q ss_pred EecC
Q psy3226 101 KPLE 104 (111)
Q Consensus 101 ~~~e 104 (111)
++++
T Consensus 80 ~~~d 83 (83)
T smart00021 80 VSVE 83 (83)
T ss_pred EecC
Confidence 9985
No 3
>KOG3571|consensus
Probab=99.95 E-value=2.7e-29 Score=216.71 Aligned_cols=85 Identities=39% Similarity=0.668 Sum_probs=80.0
Q ss_pred CCeeEEEEEECCCCceeeeeeC--CCCCChHHHhccCCCCCceeeeeeeeecCCCCc-eeEEEeccCCcceeccCCeEEE
Q psy3226 22 GTFTTVVFTFCDEQYPYRTKIP--SQSVTLKQFKDYLPKKGNYRFFFKTECDDVDTK-VIQEEIVDDNEVLPLWEGKVMG 98 (111)
Q Consensus 22 ~~~t~V~Y~~~dE~~PY~~~IP--~~~iTL~dFK~~l~kkgnyryfFK~~~~D~d~g-~VkeEI~dD~~~LP~~eGkIva 98 (111)
..+|||+||++||++||+++|| ++.|||+|||.+|+| +|||||||++ |+|+| +|||||+||+++|||||||||.
T Consensus 9 ~~etKviyhlDdettPYlvki~vp~~~vTL~dfK~vl~R-~~yKyy~ksm--D~D~g~vVKeEi~DDs~rL~cfNGrvvs 85 (626)
T KOG3571|consen 9 CSETKVIYHLDDETTPYLVKIPVPPERVTLGDFKNVLTR-PNYKYYFKSM--DPDFGRVVKEEIADDSARLPCFNGRVVS 85 (626)
T ss_pred ccceEEEEecCCCCCceeEeeecCccceehhhhhhhhcc-chhhhhhhhh--CchhhhhHhhhhccchhhccccCCceEE
Confidence 3569999999999999999986 689999999999996 7999999999 99999 9999999999999999999999
Q ss_pred EEEecCCCCCC
Q psy3226 99 QVKPLENENMG 109 (111)
Q Consensus 99 ~v~~~e~~~~~ 109 (111)
||++.+|++..
T Consensus 86 wLvs~~Gs~~~ 96 (626)
T KOG3571|consen 86 WLVSAEGSNTD 96 (626)
T ss_pred EEEecCCCCCC
Confidence 99999999873
No 4
>PF06136 DUF966: Domain of unknown function (DUF966); InterPro: IPR010369 This is a family of plant proteins confined to monocotyledons and mosses, with unknown function
Probab=96.02 E-value=0.023 Score=47.38 Aligned_cols=72 Identities=24% Similarity=0.387 Sum_probs=56.7
Q ss_pred EEEEEECCC---CceeeeeeC---CCCCChHHHhccCCC---CC---ceeeeeeeeecCCCCceeEEEeccCCcceeccC
Q psy3226 26 TVVFTFCDE---QYPYRTKIP---SQSVTLKQFKDYLPK---KG---NYRFFFKTECDDVDTKVIQEEIVDDNEVLPLWE 93 (111)
Q Consensus 26 ~V~Y~~~dE---~~PY~~~IP---~~~iTL~dFK~~l~k---kg---nyryfFK~~~~D~d~g~VkeEI~dD~~~LP~~e 93 (111)
-|+||++-- +-|=++.|| .+.++|+|+|.-|+- || .|-.=+|.- --.|.||.++.||+-|+|+-.
T Consensus 2 ~VVYYLsRnGqLEHPHfieV~~~s~~gL~LRDV~~RL~~LRGkGMp~~ySWS~KRs---YKnGfVW~DL~ddD~I~P~~g 78 (337)
T PF06136_consen 2 QVVYYLSRNGQLEHPHFIEVPLSSPQGLYLRDVKDRLTALRGKGMPDMYSWSCKRS---YKNGFVWHDLSDDDLILPASG 78 (337)
T ss_pred cEEEEEccCCCCCCCeeEEeccCCCCCcCHHHHHHHHHHhhCCCcceeeEEeeecc---ccCCceeccCcCCCeeecCCC
Confidence 489999854 688888876 468999999998632 23 677777764 556999999999999999977
Q ss_pred CeEEEEE
Q psy3226 94 GKVMGQV 100 (111)
Q Consensus 94 GkIva~v 100 (111)
|-=|.|=
T Consensus 79 ~EYVLKG 85 (337)
T PF06136_consen 79 NEYVLKG 85 (337)
T ss_pred CceEeec
Confidence 7777764
No 5
>PF08783 DWNN: DWNN domain; InterPro: IPR014891 The ~75-residue DWNN (Domain With No Name) domain is highly conserved through eukaryotic species but is absent in prokaryotes. The DWNN domain is found only at the N terminus of the RBBP6 family of proteins which includes: Mammalian RBBP6, a splicing-associated protein that plays a role in the induction of apoptosis and regulation of the cell cycle. Drosophila melanogaster (Fruit fly) SNAMA (something that sticks like glue), a protein that appears to play a role in apoptosis. All of the identified RBBP6 homologues include the DWNN domain, a CCHC-type zinc finger (see PDOC50158 from PROSITEDOC) and a RING-type zinc finger (see PDOC00449 from PROSITEDOC). The three domain form is found in plants, protozoa, fungi and microsporidia. The RBBP6 homologues in vertebrates, insects and worms are longer and include additional domains. In addition to forming part of the full-length RBBP6 protein, the DWNN domain is also expressed in vertebrates as a small protein containing a DWNN domain and a short C-terminal tail (RBBP6 variant 3). The DWNN domain adopts a fold similar to the ubiquitin one, characterised by two alpha-helices and four beta-sheets ordered as beta-beta-alpha-beta-alpha-beta along the sequence. The similarity of DWNN domain to ubiquitin and the presence of the RING finger suggest that the DWNN domain may act as an ubiquitin-like modifier, possibly playing a role in the regulation of the splicing machinery [, ]. ; GO: 0008270 zinc ion binding, 0005634 nucleus; PDB: 2C7H_A.
Probab=90.34 E-value=0.54 Score=31.68 Aligned_cols=67 Identities=21% Similarity=0.279 Sum_probs=40.7
Q ss_pred EEEEECCCCceeeeeeCCCCCChHHHhccCCCC---Cc-eeeeeeeeecCCCCceeEEEeccCCcceeccCCeEEE
Q psy3226 27 VVFTFCDEQYPYRTKIPSQSVTLKQFKDYLPKK---GN-YRFFFKTECDDVDTKVIQEEIVDDNEVLPLWEGKVMG 98 (111)
Q Consensus 27 V~Y~~~dE~~PY~~~IP~~~iTL~dFK~~l~kk---gn-yryfFK~~~~D~d~g~VkeEI~dD~~~LP~~eGkIva 98 (111)
|.|.|-.+.....+.+++..|+++|.|+.+-.+ |. --|=..-. +.+ -.||..||++++|-----||-
T Consensus 1 V~YKFkS~k~~~~i~fdG~~Isv~dLKr~I~~~~~lg~~~dfdL~i~--na~---t~eeY~dd~~~IprnssVivr 71 (74)
T PF08783_consen 1 VHYKFKSQKDYDTITFDGTSISVFDLKREIIEKKKLGKGTDFDLVIY--NAQ---TGEEYKDDNELIPRNSSVIVR 71 (74)
T ss_dssp EEEEETT-SSEEEEEESSSEEEHHHHHHHHHHHHT---TTTEEEEEE--ESS---S--EE-STT-EEETT--EEEE
T ss_pred CeEEecccCCccEEEECCCeeEHHHHHHHHHHHhCCCcCCcCCEEEE--CCC---CCCccCCCCeEEeCCCEEEEE
Confidence 679999988888889999999999999986221 11 11222222 222 257999999999976555443
No 6
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=55.51 E-value=15 Score=24.75 Aligned_cols=39 Identities=28% Similarity=0.371 Sum_probs=22.8
Q ss_pred CCCChHHHhccC-------------CCCCceeeeeeeeecCCCCceeEEEeccCCcce
Q psy3226 45 QSVTLKQFKDYL-------------PKKGNYRFFFKTECDDVDTKVIQEEIVDDNEVL 89 (111)
Q Consensus 45 ~~iTL~dFK~~l-------------~kkgnyryfFK~~~~D~d~g~VkeEI~dD~~~L 89 (111)
...||.++|+.| .....|.|.+-.. + ...||+.|++.+|
T Consensus 8 ~~~Tl~~iK~~lw~~A~~~PL~~~L~~~~~Y~F~~in~--~----ae~EEl~DEsrrL 59 (78)
T PF02192_consen 8 RDATLSEIKEELWEEAKKYPLFSLLKDPSSYIFSCINQ--F----AEQEELYDESRRL 59 (78)
T ss_dssp TT-BHHHHHHHHHHHGGGSTTCCCS--GGGEEEEEEBT--T----SCEEEE--TTSBT
T ss_pred CcCcHHHHHHHHHHHHHhCChHHHhCCCCcEEEEEecC--C----CccceeEcchhee
Confidence 688999999853 2223454444433 2 3568999999888
No 7
>PF10860 DUF2661: Protein of unknown function (DUF2661); InterPro: IPR020387 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf112; it is a family of uncharacterised viral proteins. This entry also represents the N-terminal region of Fowlpox virus (FPV) FPV217. The protein family is uncharacterised.
Probab=50.63 E-value=9.6 Score=27.88 Aligned_cols=33 Identities=27% Similarity=0.560 Sum_probs=27.1
Q ss_pred eeEEEEEECCCCceeeeeeCC--CCCChHHHhccCCCC
Q psy3226 24 FTTVVFTFCDEQYPYRTKIPS--QSVTLKQFKDYLPKK 59 (111)
Q Consensus 24 ~t~V~Y~~~dE~~PY~~~IP~--~~iTL~dFK~~l~kk 59 (111)
...|.||++++..+ .||. ..+.+=+||++.+++
T Consensus 34 ~cyvlYyien~~~~---~vP~~~~nv~~inFk~~~~~~ 68 (113)
T PF10860_consen 34 KCYVLYYIENESSP---QVPQNCDNVKFINFKDVYPRH 68 (113)
T ss_pred cEEEEEEEcCCCCc---cCCccccceEEEEhhhccchh
Confidence 36899999999876 6775 578889999998774
No 8
>PF09447 Cnl2_NKP2: Cnl2/NKP2 family protein; InterPro: IPR018565 This entry includes the Cnl2 kinetochore protein [].
Probab=50.04 E-value=8.7 Score=25.47 Aligned_cols=15 Identities=27% Similarity=0.817 Sum_probs=13.7
Q ss_pred CCCChHHHhccCCCC
Q psy3226 45 QSVTLKQFKDYLPKK 59 (111)
Q Consensus 45 ~~iTL~dFK~~l~kk 59 (111)
.-|||.+|+++|||+
T Consensus 18 ~iisl~qF~~LFPr~ 32 (67)
T PF09447_consen 18 DIISLEQFRKLFPRR 32 (67)
T ss_pred cccCHHHHHHHcccc
Confidence 679999999999995
No 9
>COG3422 Uncharacterized conserved protein [Function unknown]
Probab=44.21 E-value=11 Score=24.81 Aligned_cols=20 Identities=40% Similarity=0.703 Sum_probs=15.1
Q ss_pred HHHhccCCCCCceeeeeeee
Q psy3226 50 KQFKDYLPKKGNYRFFFKTE 69 (111)
Q Consensus 50 ~dFK~~l~kkgnyryfFK~~ 69 (111)
..|--+..+.|.|||.||+.
T Consensus 3 ~kfei~kdk~Ge~rfrlkA~ 22 (59)
T COG3422 3 GKFEIYKDKAGEYRFRLKAA 22 (59)
T ss_pred ceEEEEEcCCCcEEEEEEcc
Confidence 34444567889999999985
No 10
>smart00143 PI3K_p85B PI3-kinase family, p85-binding domain. Region of p110 PI3K that binds the p85 subunit.
Probab=43.45 E-value=24 Score=23.99 Aligned_cols=42 Identities=24% Similarity=0.290 Sum_probs=25.4
Q ss_pred CCCCChHHHhccCCCC-----------CceeeeeeeeecCCCCceeEEEeccCCcce
Q psy3226 44 SQSVTLKQFKDYLPKK-----------GNYRFFFKTECDDVDTKVIQEEIVDDNEVL 89 (111)
Q Consensus 44 ~~~iTL~dFK~~l~kk-----------gnyryfFK~~~~D~d~g~VkeEI~dD~~~L 89 (111)
++.+||.++|..|=+. .--.|.|-.... ....||+.|++.+|
T Consensus 7 ~~~aTl~~IK~~lw~~A~~~Pl~~~L~d~~~Y~F~~in~----~~e~ee~~DEtrRL 59 (78)
T smart00143 7 LREATLSTIKHELFKQARKMPLGQLLQDESSYIFVSVNQ----TAEIEEFFDETRRL 59 (78)
T ss_pred cccccHHHHHHHHHHHHHhCCHHHHhCCccceEEEeecC----Ccccccccccchhe
Confidence 3689999999875111 111344444422 23558899999887
No 11
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=35.86 E-value=2.6e+02 Score=23.38 Aligned_cols=77 Identities=13% Similarity=0.264 Sum_probs=50.6
Q ss_pred CCeeEEEEEECCCCceeeeeeCC--CCCChHHHhccCCCCCceeeeeeeeecCCCCceeEEEeccCCcceec--cCCeEE
Q psy3226 22 GTFTTVVFTFCDEQYPYRTKIPS--QSVTLKQFKDYLPKKGNYRFFFKTECDDVDTKVIQEEIVDDNEVLPL--WEGKVM 97 (111)
Q Consensus 22 ~~~t~V~Y~~~dE~~PY~~~IP~--~~iTL~dFK~~l~kkgnyryfFK~~~~D~d~g~VkeEI~dD~~~LP~--~eGkIv 97 (111)
...-.....+-++ -||-..++. +.++..-=+..|-|..+++||.+.. ...-++.+.=|+=|...|-+ +.|+|.
T Consensus 178 ~~~GLtaWRiL~~-~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~--~~~d~i~kmSlSPdg~~La~ih~sG~ls 254 (282)
T PF15492_consen 178 SSCGLTAWRILSD-SPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQG--QEQDGIFKMSLSPDGSLLACIHFSGSLS 254 (282)
T ss_pred cccCceEEEEcCC-CCcEEEccccCccccccccccceeeccceeeeeccc--cCCCceEEEEECCCCCEEEEEEcCCeEE
Confidence 3444455566544 367776663 4555332222333456889998764 33458999999999999966 999999
Q ss_pred EEEE
Q psy3226 98 GQVK 101 (111)
Q Consensus 98 a~v~ 101 (111)
.|=.
T Consensus 255 LW~i 258 (282)
T PF15492_consen 255 LWEI 258 (282)
T ss_pred EEec
Confidence 9843
No 12
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=33.01 E-value=43 Score=24.00 Aligned_cols=28 Identities=21% Similarity=0.489 Sum_probs=23.2
Q ss_pred eCCCCCChHHHhcc-CCCCCceeeeeeee
Q psy3226 42 IPSQSVTLKQFKDY-LPKKGNYRFFFKTE 69 (111)
Q Consensus 42 IP~~~iTL~dFK~~-l~kkgnyryfFK~~ 69 (111)
+-+..+||+-+|+. +.-+|+.-||||..
T Consensus 10 ~~~~~~~~K~~KrrwF~lk~~~L~YyK~k 38 (106)
T cd01237 10 FKPKKLTLKGYKQYWFTFRDTSISYYKSK 38 (106)
T ss_pred hCcchhhhhhheeEEEEEeCCEEEEEccc
Confidence 34678999999998 56679999999986
No 13
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=32.18 E-value=82 Score=19.61 Aligned_cols=56 Identities=23% Similarity=0.341 Sum_probs=32.9
Q ss_pred EEEEECCCCceeeeeeCCCCCChHHHhccCCCC-Cc--eeeeeeeeecCCCCceeEEEeccCCcc
Q psy3226 27 VVFTFCDEQYPYRTKIPSQSVTLKQFKDYLPKK-GN--YRFFFKTECDDVDTKVIQEEIVDDNEV 88 (111)
Q Consensus 27 V~Y~~~dE~~PY~~~IP~~~iTL~dFK~~l~kk-gn--yryfFK~~~~D~d~g~VkeEI~dD~~~ 88 (111)
|-.++.|+. -+..+|...+|+.+++..+..+ +. -.|-.|...+|.|. .-|.+|++.
T Consensus 3 vK~~~~~~~--~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D~e~d~----v~l~sd~Dl 61 (81)
T cd05992 3 VKVKYGGEI--RRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPDEDGDL----VTISSDEDL 61 (81)
T ss_pred EEEEecCCC--EEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeCCCCCE----EEeCCHHHH
Confidence 334555554 5666777899999999986443 11 25555555334332 445565544
No 14
>KOG3312|consensus
Probab=30.34 E-value=25 Score=27.44 Aligned_cols=12 Identities=25% Similarity=0.775 Sum_probs=10.1
Q ss_pred eccCCeEEEEEE
Q psy3226 90 PLWEGKVMGQVK 101 (111)
Q Consensus 90 P~~eGkIva~v~ 101 (111)
.+|||||||++-
T Consensus 107 SiFeGrVVAkLP 118 (186)
T KOG3312|consen 107 SIFEGRVVAKLP 118 (186)
T ss_pred hhhcceeEEecC
Confidence 569999999973
No 15
>COG3443 Predicted periplasmic or secreted protein [General function prediction only]
Probab=22.68 E-value=90 Score=24.73 Aligned_cols=30 Identities=20% Similarity=0.366 Sum_probs=23.8
Q ss_pred ceeeeeeeeecCCCCceeEEEeccCCcceecc
Q psy3226 61 NYRFFFKTECDDVDTKVIQEEIVDDNEVLPLW 92 (111)
Q Consensus 61 nyryfFK~~~~D~d~g~VkeEI~dD~~~LP~~ 92 (111)
..||.|++. |++.++-|---+.|..+-|.-
T Consensus 121 GVRylFe~~--d~~~~~pkyiQFSDH~IaP~K 150 (193)
T COG3443 121 GVRYLFECK--DADSGAPKYIQFSDHNIAPRK 150 (193)
T ss_pred ceEEEEEec--ccccCCcceEEeccccccccc
Confidence 489999988 888888777677888777753
No 16
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=22.31 E-value=1.3e+02 Score=18.85 Aligned_cols=53 Identities=19% Similarity=0.401 Sum_probs=29.9
Q ss_pred EECCCCceeeeeeCCCCCChHHHhccCCCC-Cc--eeeeeeeeecCCCCceeEEEeccCCcce
Q psy3226 30 TFCDEQYPYRTKIPSQSVTLKQFKDYLPKK-GN--YRFFFKTECDDVDTKVIQEEIVDDNEVL 89 (111)
Q Consensus 30 ~~~dE~~PY~~~IP~~~iTL~dFK~~l~kk-gn--yryfFK~~~~D~d~g~VkeEI~dD~~~L 89 (111)
++.|+ -.+..+|. .+|+.+|+..+..+ +. -.|-.|...+|.| +.-|.+|++..
T Consensus 7 ~~~~~--~~~~~~~~-~~s~~dL~~~i~~~~~~~~~~~~l~Y~Dedgd----~v~l~sd~Dl~ 62 (81)
T smart00666 7 RYGGE--TRRLSVPR-DISFEDLRSKVAKRFGLDNQSFTLKYQDEDGD----LVSLTSDEDLE 62 (81)
T ss_pred EECCE--EEEEEECC-CCCHHHHHHHHHHHhCCCCCCeEEEEECCCCC----EEEecCHHHHH
Confidence 34544 35666765 89999999886443 11 1344455544433 23566666543
No 17
>PF06442 DHFR_2: R67 dihydrofolate reductase; InterPro: IPR009159 Dihydrofolate reductase (DHFR) (1.5.1.3 from EC) catalyses the NADPH-dependent reduction of dihydrofolate to tetrahydrofolate, an essential step in de novo synthesis both of glycine and of purines and deoxythymidine phosphate (the precursors of DNA synthesis) [], and important also in the conversion of deoxyuridine monophosphate to deoxythymidine monophosphate. Although DHFR is found ubiquitously in prokaryotes and eukaryotes, and is found in all dividing cells, maintaining levels of fully reduced folate coenzymes, the catabolic steps are still not well understood []. Bacterial species possesses distinct DHFR enzymes (based on their pattern of binding diaminoheterocyclic molecules), but mammalian DHFRs are highly similar []. The active site is situated in the N-terminal half of the sequence, which includes a conserved Pro-Trp dipeptide; the tryptophan has been shown [] to be involved in the binding of substrate by the enzyme. Its central role in DNA precursor synthesis, coupled with its inhibition by antagonists such as trimethoprim and methotrexate, which are used as anti-bacterial or anti-cancer agents, has made DHFR a target of anticancer chemotherapy. However, resistance has developed against some drugs, as a result of changes in DHFR itself []. This entry represents a plasmid-encoded DHFR which shows a high level of resistance to the antibiotic trimethoprim. It is a homotetramer with an unusual pore, which contains the active site, passing through the middle of the molecule []. Its structure is unrelated to that of chromosomal DHFRs.; GO: 0004146 dihydrofolate reductase activity, 0042493 response to drug, 0055114 oxidation-reduction process; PDB: 1VIF_A 3SFM_A 2P4T_A 2GQV_A 2RK2_A 2RH2_A 2RK1_A 1VIE_A.
Probab=22.24 E-value=38 Score=23.02 Aligned_cols=11 Identities=36% Similarity=0.936 Sum_probs=7.9
Q ss_pred eccCCeEEEEE
Q psy3226 90 PLWEGKVMGQV 100 (111)
Q Consensus 90 P~~eGkIva~v 100 (111)
-.|.|+||+|-
T Consensus 36 aawqg~vvgwy 46 (78)
T PF06442_consen 36 AAWQGQVVGWY 46 (78)
T ss_dssp S--EEEEEEEE
T ss_pred ccccceEeEEE
Confidence 35999999996
Done!