Query psy3226
Match_columns 111
No_of_seqs 104 out of 141
Neff 4.3
Searched_HMMs 29240
Date Fri Aug 16 19:36:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3226.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3226hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wsp_A Axin 1 protein; signali 100.0 2.2E-43 7.6E-48 241.6 11.2 83 22-104 2-84 (84)
2 3pz8_A Segment polarity protei 100.0 2.3E-41 8E-46 240.1 8.2 84 22-107 3-90 (106)
3 3pz7_A Dixin; DIX domain, olig 100.0 2.5E-40 8.5E-45 229.5 10.4 85 21-107 5-91 (91)
4 2c7h_A RBBP6, retinoblastoma-b 93.0 0.48 1.6E-05 32.0 7.1 74 22-100 4-80 (86)
5 2v1y_A Phosphatidylinositol-4, 71.6 3.8 0.00013 28.4 3.5 40 44-89 37-89 (108)
6 1ip9_A BEM1 protein; ubiquitin 54.4 10 0.00035 25.4 2.9 57 23-88 11-70 (85)
7 4f7h_A Fermitin family homolog 29.6 47 0.0016 24.8 3.4 28 43-70 57-85 (173)
8 2rh2_A Dihydrofolate reductase 26.0 20 0.00067 22.5 0.6 10 91-100 21-30 (62)
9 4bbk_A Kindlin-1, fermitin fam 23.2 69 0.0024 23.8 3.3 33 38-70 31-64 (165)
10 1flt_X FLT-1, VGR1, FMS-like t 23.1 34 0.0012 22.4 1.5 28 25-52 12-41 (95)
11 1hle_B Horse leukocyte elastas 22.3 19 0.00067 18.9 0.1 17 81-97 13-29 (31)
12 1v86_A DNA segment, CHR 7, way 20.2 1.7E+02 0.0058 18.3 4.6 34 21-57 14-47 (95)
No 1
>1wsp_A Axin 1 protein; signaling protein; 2.90A {Rattus norvegicus} SCOP: d.15.1.8 PDB: 2d5g_A
Probab=100.00 E-value=2.2e-43 Score=241.60 Aligned_cols=83 Identities=41% Similarity=0.808 Sum_probs=80.1
Q ss_pred CCeeEEEEEECCCCceeeeeeCCCCCChHHHhccCCCCCceeeeeeeeecCCCCceeEEEeccCCcceeccCCeEEEEEE
Q psy3226 22 GTFTTVVFTFCDEQYPYRTKIPSQSVTLKQFKDYLPKKGNYRFFFKTECDDVDTKVIQEEIVDDNEVLPLWEGKVMGQVK 101 (111)
Q Consensus 22 ~~~t~V~Y~~~dE~~PY~~~IP~~~iTL~dFK~~l~kkgnyryfFK~~~~D~d~g~VkeEI~dD~~~LP~~eGkIva~v~ 101 (111)
.++|+|+||+|||++||+++||+++|||||||++|+|+||||||||++|+|+++|+|||||+||+++||+|||||||||+
T Consensus 2 ~~~T~V~Y~~~~e~~Py~~~ip~~~iTL~dFK~~l~k~g~yrffFK~~~~d~~~~~V~eEI~dD~~~LP~~eGkIva~v~ 81 (84)
T 1wsp_A 2 CDSIVVAYYFCGEPIPYRTLVRGRAVTLGQFKELLTKKGSYRYYFKKVSDEFDCGVVFEEVREDEAILPVFEEKIIGKVE 81 (84)
T ss_dssp CCCEEEEEEETTCSSCEEEEETTSCCBHHHHHHHCCSCSCEEEEEEEECTTSTTSEEEEEECCTTCBCCCBTTBEEEEEE
T ss_pred CCceEEEEEeCCCCcceEEecCCCcccHHHHHHhcCCCCceEEEEeecCccccCCceEEEEcCCCccccccCCEEEEEEE
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecC
Q psy3226 102 PLE 104 (111)
Q Consensus 102 ~~e 104 (111)
+++
T Consensus 82 ~~d 84 (84)
T 1wsp_A 82 KVD 84 (84)
T ss_dssp ECC
T ss_pred ecC
Confidence 985
No 2
>3pz8_A Segment polarity protein dishevelled homolog DVL-; DIX domain, oligomerization, signaling protein; 2.87A {Mus musculus}
Probab=100.00 E-value=2.3e-41 Score=240.14 Aligned_cols=84 Identities=36% Similarity=0.612 Sum_probs=74.6
Q ss_pred CCeeEEEEEECCCCceeeeeeCC--CCCChHHHhccCCCCC--ceeeeeeeeecCCCCceeEEEeccCCcceeccCCeEE
Q psy3226 22 GTFTTVVFTFCDEQYPYRTKIPS--QSVTLKQFKDYLPKKG--NYRFFFKTECDDVDTKVIQEEIVDDNEVLPLWEGKVM 97 (111)
Q Consensus 22 ~~~t~V~Y~~~dE~~PY~~~IP~--~~iTL~dFK~~l~kkg--nyryfFK~~~~D~d~g~VkeEI~dD~~~LP~~eGkIv 97 (111)
.++|+|+||+|||+|||+++||. ++|||||||++|++|| |||||||++ |+|+|+|||||+||+++||+||||||
T Consensus 3 ~~~TkV~Y~~ddE~tPY~~~Ip~~~~~iTL~dFK~~l~kr~~~nYryfFK~~--d~dfgvVkeEI~dD~~~LP~~eGkIv 80 (106)
T 3pz8_A 3 HMDTKIIYHMDEEETPDLVKLPVAPERVTLADFKNVLSNRPVHAYKFFFKSM--DQDFGVVKEEIFDDNAKLPCFNGRVV 80 (106)
T ss_dssp --CEEEEEECTTCSSCEEEEESSCSSSCBHHHHHHTCTTSCGGGBCCEEEEE--ETTTEEEEEECCCTTCBCCCBTTBEE
T ss_pred CCceEEEEECCCCCCceEEEccCCcccccHHHHHHHHhcCCCccceEEEeec--CcccCeeeeEecCCcccccccCCEEE
Confidence 46799999999999999999974 6999999999998887 999999999 67779999999999999999999999
Q ss_pred EEEEecCCCC
Q psy3226 98 GQVKPLENEN 107 (111)
Q Consensus 98 a~v~~~e~~~ 107 (111)
|||+++|+++
T Consensus 81 ~wlv~~e~s~ 90 (106)
T 3pz8_A 81 SWLVLAEGAH 90 (106)
T ss_dssp EECCBC----
T ss_pred EEEEecCCcC
Confidence 9999999974
No 3
>3pz7_A Dixin; DIX domain, oligomerization, signaling protein; 2.44A {Homo sapiens}
Probab=100.00 E-value=2.5e-40 Score=229.53 Aligned_cols=85 Identities=36% Similarity=0.622 Sum_probs=76.3
Q ss_pred CCCeeEEEEEECCCCceeeeeeCC--CCCChHHHhccCCCCCceeeeeeeeecCCCCceeEEEeccCCcceeccCCeEEE
Q psy3226 21 SGTFTTVVFTFCDEQYPYRTKIPS--QSVTLKQFKDYLPKKGNYRFFFKTECDDVDTKVIQEEIVDDNEVLPLWEGKVMG 98 (111)
Q Consensus 21 ~~~~t~V~Y~~~dE~~PY~~~IP~--~~iTL~dFK~~l~kkgnyryfFK~~~~D~d~g~VkeEI~dD~~~LP~~eGkIva 98 (111)
++++|+|+||+++|+|||+++||. ++|||||||++|+|+||||||||++ |+|+|+|||||+||+++||+|||||||
T Consensus 5 ~~~~TkV~Y~~d~e~tPY~~~Ip~~~~~iTL~dFK~~l~r~g~yryfFK~~--d~dfg~VkeEI~dD~~~LP~~eGkIva 82 (91)
T 3pz7_A 5 SSTCTKVLYFTDRSLTPFMVNIPKRLEEVTLKDFKAAIDREGNHRYHFKAM--DPEFGTVKEEIFHDDDAIPGWEGKIVA 82 (91)
T ss_dssp CSCCEEEEEECTTCSSCEEEEESSCSTTCBHHHHHHHHCCCSCEEEEEEEE--ETTTEEEEEEECCTTSBCCCBTTEEEE
T ss_pred cCceeEEEEEcCCCCCceEEECcCCcccccHHHHHHhhCCCCCceEEEeee--CcccCccceEecCCCceeeccCCEEEE
Confidence 568899999999999999999996 5999999999999999999999999 456699999999999999999999999
Q ss_pred EEEecCCCC
Q psy3226 99 QVKPLENEN 107 (111)
Q Consensus 99 ~v~~~e~~~ 107 (111)
||++.-+++
T Consensus 83 ~ve~~~~~~ 91 (91)
T 3pz7_A 83 WVEEDHGEN 91 (91)
T ss_dssp EEEEC----
T ss_pred EEEcccCCC
Confidence 999876654
No 4
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=92.98 E-value=0.48 Score=31.95 Aligned_cols=74 Identities=15% Similarity=0.287 Sum_probs=53.0
Q ss_pred CCeeEEEEEECCCCceeeeeeCCCCCChHHHhccCCCCCce---eeeeeeeecCCCCceeEEEeccCCcceeccCCeEEE
Q psy3226 22 GTFTTVVFTFCDEQYPYRTKIPSQSVTLKQFKDYLPKKGNY---RFFFKTECDDVDTKVIQEEIVDDNEVLPLWEGKVMG 98 (111)
Q Consensus 22 ~~~t~V~Y~~~dE~~PY~~~IP~~~iTL~dFK~~l~kkgny---ryfFK~~~~D~d~g~VkeEI~dD~~~LP~~eGkIva 98 (111)
+.+..|.|.|-.+.-+-.+.+++..|++.+.|+.+-.+..- .|=..-. +.+ -.||..||++++|-----||.
T Consensus 4 ~~mS~V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~~kl~~~dfDL~i~--na~---T~eeY~Dd~~lIprnssViVr 78 (86)
T 2c7h_A 4 GSMSCVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADCDLQIT--NAQ---TKEEYTDDNALIPKNSSVIVR 78 (86)
T ss_dssp TTBEEEEEEETTCSSEEEEEESSSEEEHHHHHHHHHHHHTCCTTTEEEEEE--ESS---SCCEECSTTCEEETTCCEEEE
T ss_pred cceeEEEEEEeecCCcceEEEcCCEEEHHHHHHHHHHHhCCCCCcccEEEe--CCC---CCCccCCCceEEecCCEEEEE
Confidence 57889999999999988889999999999999996332111 1111111 111 257999999999987666665
Q ss_pred EE
Q psy3226 99 QV 100 (111)
Q Consensus 99 ~v 100 (111)
.+
T Consensus 79 Rv 80 (86)
T 2c7h_A 79 RI 80 (86)
T ss_dssp EE
T ss_pred ec
Confidence 54
No 5
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=71.62 E-value=3.8 Score=28.41 Aligned_cols=40 Identities=25% Similarity=0.380 Sum_probs=27.0
Q ss_pred CCCCChHHHhcc-------------CCCCCceeeeeeeeecCCCCceeEEEeccCCcce
Q psy3226 44 SQSVTLKQFKDY-------------LPKKGNYRFFFKTECDDVDTKVIQEEIVDDNEVL 89 (111)
Q Consensus 44 ~~~iTL~dFK~~-------------l~kkgnyryfFK~~~~D~d~g~VkeEI~dD~~~L 89 (111)
.+.+||.++|.. |.....|.|. +.+.+ .-.||+.|++.+|
T Consensus 37 ~~~~tl~eiK~~lw~eA~~~PL~~~L~d~~~Y~F~--~in~~----~e~Eel~DEsrrL 89 (108)
T 2v1y_A 37 LREATLITIKHELFKEARKYPLHQLLQDESSYIFV--SVTQE----AEREEFFDETRRL 89 (108)
T ss_dssp ETTCBHHHHHHHHHHHGGGSTTGGGCCCGGGCEEE--EEBTT----SCEEEECCTTSBG
T ss_pred eccccHHHHHHHHHHHHHhCchHHHhCCccceEEE--EecCC----ceEEEeEcCceEE
Confidence 369999999983 4443445554 44323 2459999999887
No 6
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=54.39 E-value=10 Score=25.43 Aligned_cols=57 Identities=21% Similarity=0.339 Sum_probs=40.4
Q ss_pred CeeEEEEEECCCCceeeeeeCCCCCChHHHhccCCCC---CceeeeeeeeecCCCCceeEEEeccCCcc
Q psy3226 23 TFTTVVFTFCDEQYPYRTKIPSQSVTLKQFKDYLPKK---GNYRFFFKTECDDVDTKVIQEEIVDDNEV 88 (111)
Q Consensus 23 ~~t~V~Y~~~dE~~PY~~~IP~~~iTL~dFK~~l~kk---gnyryfFK~~~~D~d~g~VkeEI~dD~~~ 88 (111)
..++|-.||.|.= +...+|. .|+|.|.++.|..+ +++.-++|.- |++. . ||.+|+++
T Consensus 11 ~~~KVK~yy~DDI--iAIrvP~-di~~~~L~dKi~~RLk~~~~~l~~ykd--e~~g-~---~i~sD~dl 70 (85)
T 1ip9_A 11 KTTKIKFYYKDDI--FALMLKG-DTTYKELRSKIAPRIDTDNFKLQTKLF--DGSG-E---EIKTDSQV 70 (85)
T ss_dssp CCEEEEECBTTCC--EEEEECS-CCCHHHHHHHHHHHHTSSCEEEEECCS--SSCC-S---CCCSHHHH
T ss_pred CceEEEEEecCcE--EEEECCC-CCCHHHHHHHHHHHhcccceEEEEecC--CCCC-C---cccCHHHH
Confidence 3479989999864 6666664 79999999886332 6888888863 5544 3 88877654
No 7
>4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding, integrin activation, cytoplas membrane, cell adhesion; HET: SRT; 1.90A {Homo sapiens} PDB: 2lko_A*
Probab=29.60 E-value=47 Score=24.83 Aligned_cols=28 Identities=25% Similarity=0.336 Sum_probs=23.4
Q ss_pred CCCCCChHHHhcc-CCCCCceeeeeeeee
Q psy3226 43 PSQSVTLKQFKDY-LPKKGNYRFFFKTEC 70 (111)
Q Consensus 43 P~~~iTL~dFK~~-l~kkgnyryfFK~~~ 70 (111)
-++.+||+-||++ |..++..-++||..-
T Consensus 57 ~pk~~tLKgyKryWFv~kd~~LsyYKskE 85 (173)
T 4f7h_A 57 KPKKLTLKGYKQYWCTFKDTSISCYKSKE 85 (173)
T ss_dssp CCBTTBCCCCEEEEEEEETTEEEEESCGG
T ss_pred cchhcccccceeEEEEEeCCEEEEEcCHh
Confidence 3578999999998 566788899999983
No 8
>2rh2_A Dihydrofolate reductase type 2; folate metabolism, plasmid-encoded R67 DHFR, TMP-resistant DHFR, antibiotic resistance, methotrexate resistance; 0.96A {Escherichia coli} SCOP: b.34.4.1 PDB: 1vif_A* 1vie_A 2gqv_A 2rk1_A* 2rk2_A* 3sfm_A 2p4t_A*
Probab=25.98 E-value=20 Score=22.46 Aligned_cols=10 Identities=30% Similarity=1.009 Sum_probs=8.9
Q ss_pred ccCCeEEEEE
Q psy3226 91 LWEGKVMGQV 100 (111)
Q Consensus 91 ~~eGkIva~v 100 (111)
.|.|+||+|-
T Consensus 21 awqg~ivgwy 30 (62)
T 2rh2_A 21 AWQGQIVGWY 30 (62)
T ss_dssp CCEEEEEEEE
T ss_pred cccceEeEEE
Confidence 5999999995
No 9
>4bbk_A Kindlin-1, fermitin family homolog 1; PH domain, cell adhesion; 2.10A {Mus musculus}
Probab=23.22 E-value=69 Score=23.75 Aligned_cols=33 Identities=24% Similarity=0.336 Sum_probs=18.4
Q ss_pred eeeeeCCCCCChHHHhcc-CCCCCceeeeeeeee
Q psy3226 38 YRTKIPSQSVTLKQFKDY-LPKKGNYRFFFKTEC 70 (111)
Q Consensus 38 Y~~~IP~~~iTL~dFK~~-l~kkgnyryfFK~~~ 70 (111)
|+...-++.+||+-||++ +.-++..-++||+.-
T Consensus 31 yLk~~~pkrltLKgfKryWfv~kDt~LsyYKSkE 64 (165)
T 4bbk_A 31 YLKLFRPKKLMLKACKQYWFVFKDTSIAYFKNKE 64 (165)
T ss_dssp EEEEEC-------CCEEEEEEEETTEEEEESSGG
T ss_pred HHHhhcccccccccceeEEEEEeCCEEEEEcCHH
Confidence 333334578999999998 555677789999973
No 10
>1flt_X FLT-1, VGR1, FMS-like tyrosine kinase 1; complex (growth factor-transferase), FLT-1 receptor, cystine glycoprotein; 1.70A {Homo sapiens} SCOP: b.1.1.4 PDB: 1qsv_A 1qsz_A 1qty_X 2xac_C 1rv6_X*
Probab=23.13 E-value=34 Score=22.36 Aligned_cols=28 Identities=29% Similarity=0.496 Sum_probs=21.3
Q ss_pred eEEEEEECCCC--ceeeeeeCCCCCChHHH
Q psy3226 25 TTVVFTFCDEQ--YPYRTKIPSQSVTLKQF 52 (111)
Q Consensus 25 t~V~Y~~~dE~--~PY~~~IP~~~iTL~dF 52 (111)
--|+|-..|++ +|.++..|.-.+||+.+
T Consensus 12 ~~vv~~~e~~~~viPC~vTdP~~~VtL~~~ 41 (95)
T 1flt_X 12 PEIIHMTEGRELVIPCRVTSPNITVTLKKF 41 (95)
T ss_dssp CEEEEECTTSCEEECCCBSCTTSCCEEEET
T ss_pred ceEEEEEcCCcEEEEeEcCCCCCcEEEEec
Confidence 34555567775 89999999889999654
No 11
>1hle_B Horse leukocyte elastase inhibitor; hydrolase inhibitor(serine proteinase); 1.95A {Equus caballus} SCOP: e.1.1.1
Probab=22.28 E-value=19 Score=18.87 Aligned_cols=17 Identities=18% Similarity=0.145 Sum_probs=12.9
Q ss_pred EeccCCcceeccCCeEE
Q psy3226 81 EIVDDNEVLPLWEGKVM 97 (111)
Q Consensus 81 EI~dD~~~LP~~eGkIv 97 (111)
=|.|++.-.++|-|||+
T Consensus 13 ~I~~~~t~~iLF~G~v~ 29 (31)
T 1hle_B 13 FIRHNPSANILFLGRFS 29 (31)
T ss_dssp EEEETTTTEEEEEEEEC
T ss_pred EEEECCCCcEEEEEEec
Confidence 36677777788988875
No 12
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=20.20 E-value=1.7e+02 Score=18.29 Aligned_cols=34 Identities=12% Similarity=0.176 Sum_probs=22.7
Q ss_pred CCCeeEEEEEECCCCceeeeeeCCCCCChHHHhccCC
Q psy3226 21 SGTFTTVVFTFCDEQYPYRTKIPSQSVTLKQFKDYLP 57 (111)
Q Consensus 21 ~~~~t~V~Y~~~dE~~PY~~~IP~~~iTL~dFK~~l~ 57 (111)
+....+|.-.+.++ .|.+.++. ..|++++|+.|.
T Consensus 14 ~~~~~~i~Vk~~g~--~~~i~v~~-~~TV~~LK~~I~ 47 (95)
T 1v86_A 14 GKELVDLKIIWNKT--KHDVKVPL-DSTGSELKQKIH 47 (95)
T ss_dssp CCCCEEEEEEETTE--EEEEEECT-TSBHHHHHHHHH
T ss_pred CCceEEEEEEECCE--EEEEEECC-CCcHHHHHHHHH
Confidence 44455666566654 45666765 569999999864
Done!