RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy3226
         (111 letters)



>1wsp_A Axin 1 protein; signaling protein; 2.90A {Rattus norvegicus} SCOP:
           d.15.1.8 PDB: 2d5g_A
          Length = 84

 Score =  105 bits (264), Expect = 1e-31
 Identities = 34/82 (41%), Positives = 55/82 (67%)

Query: 23  TFTTVVFTFCDEQYPYRTKIPSQSVTLKQFKDYLPKKGNYRFFFKTECDDVDTKVIQEEI 82
               V + FC E  PYRT +  ++VTL QFK+ L KKG+YR++FK   D+ D  V+ EE+
Sbjct: 3   DSIVVAYYFCGEPIPYRTLVRGRAVTLGQFKELLTKKGSYRYYFKKVSDEFDCGVVFEEV 62

Query: 83  VDDNEVLPLWEGKVMGQVKPLE 104
            +D  +LP++E K++G+V+ ++
Sbjct: 63  REDEAILPVFEEKIIGKVEKVD 84


>3pz7_A Dixin; DIX domain, oligomerization, signaling protein; 2.44A {Homo
           sapiens}
          Length = 91

 Score = 98.5 bits (245), Expect = 1e-28
 Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 4/90 (4%)

Query: 20  QSGTFTTVVFTFCDEQYPYRTKIP--SQSVTLKQFKDYLPKKGNYRFFFKTECDDVDTKV 77
            S T T V++       P+   IP   + VTLK FK  + ++GN+R+ FK    +     
Sbjct: 4   MSSTCTKVLYFTDRSLTPFMVNIPKRLEEVTLKDFKAAIDREGNHRYHFKAMDPEFG--T 61

Query: 78  IQEEIVDDNEVLPLWEGKVMGQVKPLENEN 107
           ++EEI  D++ +P WEGK++  V+    EN
Sbjct: 62  VKEEIFHDDDAIPGWEGKIVAWVEEDHGEN 91


>3pz8_A Segment polarity protein dishevelled homolog DVL-; DIX domain,
           oligomerization, signaling protein; 2.87A {Mus musculus}
          Length = 106

 Score = 94.8 bits (235), Expect = 6e-27
 Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 2/92 (2%)

Query: 21  SGTFTTVVFTFCDEQYPYRTKIP--SQSVTLKQFKDYLPKKGNYRFFFKTECDDVDTKVI 78
               T +++   +E+ P   K+P   + VTL  FK+ L  +  + + F  +  D D  V+
Sbjct: 2   PHMDTKIIYHMDEEETPDLVKLPVAPERVTLADFKNVLSNRPVHAYKFFFKSMDQDFGVV 61

Query: 79  QEEIVDDNEVLPLWEGKVMGQVKPLENENMGH 110
           +EEI DDN  LP + G+V+  +   E  +   
Sbjct: 62  KEEIFDDNAKLPCFNGRVVSWLVLAEGAHSDA 93


>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
           cerevisiae}
          Length = 231

 Score = 30.1 bits (67), Expect = 0.11
 Identities = 10/68 (14%), Positives = 21/68 (30%), Gaps = 28/68 (41%)

Query: 33  DEQY------PYRT---KIPSQSVTLKQFK---------DYLPKKGNY----------RF 64
            +++      P+     ++P   +   +           D L KK  +          +F
Sbjct: 160 GKKFLVIAYEPFENIAIELPPNEILFSENNDMDNNNDGVDELNKKCTFWDAISKLYYVQF 219

Query: 65  FFKTECDD 72
           FFK    +
Sbjct: 220 FFKQAEQE 227


>2nrr_A Uvrabc system protein C; UVRC, endonuclase, NER, hydrolase; 1.20A
          {Thermotoga maritima}
          Length = 159

 Score = 25.1 bits (56), Expect = 4.4
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 2/30 (6%)

Query: 52 FKDYLPKKGNYRFF-FKTECDDVDTKVIQE 80
          F+D  PKKG+YR +  + +  D D + I+ 
Sbjct: 40 FEDGFPKKGDYRRYKIEQDHPD-DYESIRT 68


>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic
           subunit chimera; multifunction macromolecular complex,
           ubiquitin, ATP, conformational change, thioester,
           switch, adenylation, protein turnover, ligase; HET: ATP;
           2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
          Length = 805

 Score = 25.6 bits (56), Expect = 4.5
 Identities = 8/15 (53%), Positives = 9/15 (60%), Gaps = 3/15 (20%)

Query: 5   CTLRSVTSTPRPPEH 19
           CT+ S    PR PEH
Sbjct: 579 CTIAS---MPRLPEH 590


>1ng6_A Hypothetical protein YQEY; structural genomics, domain GATB/YQEY,
           PFAM02637, DUF186, PSI, protein structure initiative;
           1.40A {Bacillus subtilis} SCOP: a.182.1.1
          Length = 148

 Score = 24.5 bits (54), Expect = 8.8
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 94  GKVMGQVKP 102
           GKVMG + P
Sbjct: 120 GKVMGAIMP 128


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.317    0.134    0.409 

Gapped
Lambda     K      H
   0.267   0.0515    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,688,280
Number of extensions: 85800
Number of successful extensions: 119
Number of sequences better than 10.0: 1
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 11
Length of query: 111
Length of database: 6,701,793
Length adjustment: 75
Effective length of query: 36
Effective length of database: 4,607,718
Effective search space: 165877848
Effective search space used: 165877848
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.9 bits)