BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3227
(561 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 161 bits (408), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 94/282 (33%), Positives = 144/282 (51%), Gaps = 11/282 (3%)
Query: 277 ITYPLDLTKTRLQIQGEAASQATNGDKKLPHRGMVKTGLGIIREEGVSKLWRGVTPALYR 336
IT+PLD K RLQIQGE+ +RG++ T L ++R EG L+ G+ L R
Sbjct: 18 ITFPLDTAKVRLQIQGESQGLVRTAASA-QYRGVLGTILTMVRTEGPRSLYNGLVAGLQR 76
Query: 337 HVVYSGCRIVTYEKIRASMSKNRDGTFPVWKSAISGVSSGALAQFLSSPADLVKVQIQME 396
+ ++ RI Y+ ++ +K + + ++G ++GALA ++ P D+VKV+ Q +
Sbjct: 77 QMSFASVRIGLYDSVKQFYTKGSEHA-GIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQ 135
Query: 397 GKRQLQGKAPRVHSPWHAFQKILSEGGIRGLWKGSIPNVQRAALVNLGDLTTYDTAKXXX 456
+ G R S A++ I E GIRGLWKG+ PNV R A+VN +L TYD K
Sbjct: 136 AR---AGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTL 192
Query: 457 XXXXXXXXXXXXXXXXXGMAGLVAATMGTPADVVKTRIMNQPTDINGRGLLYKSSLDCLL 516
AG + +P DVVKTR MN Y S+ C L
Sbjct: 193 LKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALG------QYHSAGHCAL 246
Query: 517 RTVENEGFLALYKGFLPVWIRMAPWSLTFWLSFEQIRHSLGA 558
+ EG A YKGF+P ++R+ W++ ++++EQ++ +L A
Sbjct: 247 TMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMA 288
Score = 129 bits (325), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 99/336 (29%), Positives = 155/336 (46%), Gaps = 52/336 (15%)
Query: 31 AACVAEVITYPLDLTKTRLQIQGEAASQATNGDKKLPHRGMVKTGLGIIREEGVSKLWRG 90
AAC+A++IT+PLD K RLQIQGE+ +RG++ T L ++R EG L+ G
Sbjct: 11 AACIADLITFPLDTAKVRLQIQGESQGLVRTAASA-QYRGVLGTILTMVRTEGPRSLYNG 69
Query: 91 VTPALYRHVVYSGCRIVTYEKIRASMSKNRDGTFPVWKSAISGVSSGALAQFLSSPADLV 150
+ L R + ++ RI Y+ ++ +K + + ++G ++GALA ++ P D+V
Sbjct: 70 LVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHA-GIGSRLLAGSTTGALAVAVAQPTDVV 128
Query: 151 KVQIQMEGKRQLQGKAPRVHSPWHAFQKILSEGGIRGLWKGSIPNVQRAALVNLGDLTTY 210
KV+ Q + + G R S A++ I E GIRGLWKG+ PNV R A+VN +L TY
Sbjct: 129 KVRFQAQAR---AGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTY 185
Query: 211 DTAKXXXXXXXXXXXXXXXXXXXXNTGLNFEKLPLIHSPAIAQHYRNKPSLKRSKSGWKF 270
D K L + LP + A G F
Sbjct: 186 DLIK----------------DTLLKANLMTDDLPCHFTSAF---------------GAGF 214
Query: 271 LLLIPQITYPLDLTKTRLQIQGEAASQATNGDKKLPHRGMVKTGLGIIREEGVSKLWRGV 330
+ I P+D+ KTR A Q + L ++R+EG ++G
Sbjct: 215 CTTV--IASPVDVVKTRY--MNSALGQ---------YHSAGHCALTMLRKEGPRAFYKGF 261
Query: 331 TPALYRHVVYSGCRIVTYEKI-RASMS--KNRDGTF 363
P+ R ++ VTYE++ RA M+ ++R+ F
Sbjct: 262 MPSFLRLGSWNVVMFVTYEQLKRALMAAYQSREAPF 297
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 14/109 (12%)
Query: 19 DSVWCTYIVSVAAACVAEVITYPLDLTKTRLQIQGEAASQATNGDKKLPHRGMVKTGLGI 78
D + C + + A VI P+D+ KTR A Q + L +
Sbjct: 200 DDLPCHFTSAFGAGFCTTVIASPVDVVKTRYM--NSALGQ---------YHSAGHCALTM 248
Query: 79 IREEGVSKLWRGVTPALYRHVVYSGCRIVTYEKI-RASMS--KNRDGTF 124
+R+EG ++G P+ R ++ VTYE++ RA M+ ++R+ F
Sbjct: 249 LRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAAYQSREAPF 297
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 110/259 (42%), Gaps = 21/259 (8%)
Query: 280 PLDLTKTRLQIQGEAASQATNGDKKLPHRGMVKTGLGIIREEGVSKLWRGVTPALYRHVV 339
P++ K LQ+Q AS+ + +K+ ++G++ + I +E+G WRG + R+
Sbjct: 27 PIERVKLLLQVQ--HASKQISAEKQ--YKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFP 82
Query: 340 YSGCRIVTYEKIRASMSKNRDGTFPVWK----SAISGVSSGALAQFLSSPADLVKVQIQM 395
+K + D W+ + SG ++GA + P D + ++
Sbjct: 83 TQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAA 142
Query: 396 E-GKRQLQGKAPRVHSPW-HAFQKILSEGGIRGLWKGSIPNVQRAALVNLGDLTTYDTAK 453
+ GK G A R + + KI G+RGL++G +VQ + YDTAK
Sbjct: 143 DVGK----GAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAK 198
Query: 454 XXXXXXXXXXXXX--XXXXXXXGMAGLVAATMGTPADVVKTRIMNQPTDINGRGLLYKSS 511
+AGLV+ P D V+ R+M Q + G ++Y +
Sbjct: 199 GMLPDPKNVHIIVSWMIAQTVTAVAGLVS----YPFDTVRRRMMMQ-SGRKGADIMYTGT 253
Query: 512 LDCLLRTVENEGFLALYKG 530
+DC + ++EG A +KG
Sbjct: 254 VDCWRKIAKDEGPKAFFKG 272
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 85/196 (43%), Gaps = 14/196 (7%)
Query: 25 YIVSVAAACVAEVITYPLDLTKTRLQIQGEAASQATNGDKKLPHRGMVKTGLGIIREEGV 84
++ AA +++ P++ K LQ+Q AS+ + +K+ ++G++ + I +E+G
Sbjct: 11 FLAGGVAAAISKTAVAPIERVKLLLQVQ--HASKQISAEKQ--YKGIIDCVVRIPKEQGF 66
Query: 85 SKLWRGVTPALYRHVVYSGCRIVTYEKIRASMSKNRDGTFPVWK----SAISGVSSGALA 140
WRG + R+ +K + D W+ + SG ++GA +
Sbjct: 67 LSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATS 126
Query: 141 QFLSSPADLVKVQIQME-GKRQLQGKAPRVHSPW-HAFQKILSEGGIRGLWKGSIPNVQR 198
P D + ++ + GK G A R + + KI G+RGL++G +VQ
Sbjct: 127 LCFVYPLDFARTRLAADVGK----GAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQG 182
Query: 199 AALVNLGDLTTYDTAK 214
+ YDTAK
Sbjct: 183 IIIYRAAYFGVYDTAK 198
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 508 YKSSLDCLLRTVENEGFLALYKGFLPVWIRMAP 540
YK +DC++R + +GFL+ ++G L IR P
Sbjct: 50 YKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFP 82
>pdb|1PYT|D Chain D, Ternary Complex Of Procarboxypeptidase A, Proproteinase E,
And Chymotrypsinogen C
Length = 251
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 27 VSVAAACVAEVITYPLDLTKTRLQIQGEAASQATNGDKKLPHRG----MVKTGLGIIR 80
V AA C++ +TY + L K L+++ EA S D H +V+ + +I+
Sbjct: 53 VLTAAHCISNTLTYRVALGKNNLEVEDEAGSLYVGVDTIFVHEKWNSFLVRNDIALIK 110
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,205,678
Number of Sequences: 62578
Number of extensions: 585670
Number of successful extensions: 1103
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1075
Number of HSP's gapped (non-prelim): 10
length of query: 561
length of database: 14,973,337
effective HSP length: 104
effective length of query: 457
effective length of database: 8,465,225
effective search space: 3868607825
effective search space used: 3868607825
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)