Query psy3227
Match_columns 561
No_of_seqs 411 out of 2809
Neff 10.0
Searched_HMMs 29240
Date Fri Aug 16 19:38:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3227.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3227hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 100.0 3.4E-55 1.2E-59 429.6 24.8 285 263-558 4-288 (303)
2 1okc_A ADP, ATP carrier protei 100.0 1.6E-54 5.5E-59 424.1 24.7 287 260-556 7-297 (297)
3 1okc_A ADP, ATP carrier protei 100.0 2.8E-52 9.6E-57 408.2 24.0 294 123-456 4-297 (297)
4 2lck_A Mitochondrial uncouplin 100.0 1.1E-52 3.8E-57 411.7 21.1 284 23-355 3-286 (303)
5 3vjj_A P9-1; 3.00A {Rice black 19.3 55 0.0019 29.5 2.3 36 478-524 273-308 (368)
6 2acm_A Mucin-1; auto-catalytic 17.8 19 0.00064 24.0 -0.7 20 509-528 40-59 (66)
7 2a3d_A Protein (de novo three- 17.2 2.1E+02 0.0073 18.6 4.1 16 40-55 9-24 (73)
8 3tgu_G UQCRQ, mitochondrial ub 16.6 1.2E+02 0.0041 21.9 3.2 33 523-555 33-65 (81)
9 1y9i_A Low temperature require 14.8 1.1E+02 0.0036 25.9 2.9 41 442-482 113-158 (178)
10 1pp9_G Ubiquinol-cytochrome C 12.4 1.9E+02 0.0064 20.9 3.3 34 522-555 32-65 (81)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=3.4e-55 Score=429.64 Aligned_cols=285 Identities=34% Similarity=0.588 Sum_probs=252.9
Q ss_pred cccccchhhhhhhhccchhhHHHHHHHhcccccccccCCCCCCCCcchHHHHHHHHHhhhhhHhccCchHHHHHHHHhhh
Q psy3227 263 RSKSGWKFLLLIPQITYPLDLTKTRLQIQGEAASQATNGDKKLPHRGMVKTGLGIIREEGVSKLWRGVTPALYRHVVYSG 342 (561)
Q Consensus 263 ~~~~g~~a~~~~~~i~~Pld~vktr~q~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~~~ 342 (561)
++++|+++++++.++++|+|+||+|+|.+....... .......|+++++++++++++||+++||||+.+.+++.+|..+
T Consensus 4 ~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 82 (303)
T 2lck_A 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLV-RTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFAS 82 (303)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHH-HHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHHcCcHHHHHHHHHhhhcccccc-ccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHH
Confidence 466899999999999999999999999986531100 0012346889999999999999999999999999999999999
Q ss_pred hHHHhHHHHHHHHccCCCCCCchHHHHHHHhhHhhhHhHhcChHHHHHHHHHhccccccCCCCCCCCCHHHHHHHHHHhh
Q psy3227 343 CRIVTYEKIRASMSKNRDGTFPVWKSAISGVSSGALAQFLSSPADLVKVQIQMEGKRQLQGKAPRVHSPWHAFQKILSEG 422 (561)
Q Consensus 343 ~~f~~ye~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~~~~Pld~vktr~q~~~~~~~~~~~~~y~~~~~~~~~i~~~~ 422 (561)
++|.+||.+++.+.+..+ ..+.+..+++|++||+++.++++|+|+||+|+|++... +...+|.++++++++|+++|
T Consensus 83 i~f~~ye~~k~~~~~~~~-~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~---~~~~~~~~~~~~~~~i~~~e 158 (303)
T 2lck_A 83 VRIGLYDSVKQFYTKGSE-HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARA---GGGRRYQSTVEAYKTIAREE 158 (303)
T ss_dssp HTTTHHHHHHHHHSCCCS-SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSC---CCSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCc-CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhccccc---CCCCCCCCHHHHHHHHHHhc
Confidence 999999999999854322 46778899999999999999999999999999998642 23457999999999999999
Q ss_pred CccccccCchHHHHHHHHhhhhhHhhHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcCcHHHHHhhhhcCCCCCC
Q psy3227 423 GIRGLWKGSIPNVQRAALVNLGDLTTYDTAKHLIISHTSLSDSHLTHVLSSGMAGLVAATMGTPADVVKTRIMNQPTDIN 502 (561)
Q Consensus 423 G~~glyrG~~~~ll~~~~~~~~~~~~ye~~k~~l~~~~~~~~~~~~~~~~g~~ag~~a~~~t~P~dviktr~q~~~~~~~ 502 (561)
|++|||||+.+++++++|.++++|.+||.+|+.+.+....+++...++++|++||++++++++|+||||+|||++...
T Consensus 159 G~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~~-- 236 (303)
T 2lck_A 159 GIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALG-- 236 (303)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSS--
T ss_pred ChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcccc--
Confidence 999999999999999999999999999999999876555556778899999999999999999999999999997532
Q ss_pred CCccccCcHHHHHHHHHHhhchhhhccchhhHHHHHhhhHHHHHHHHHHHHHHhCC
Q psy3227 503 GRGLLYKSSLDCLLRTVENEGFLALYKGFLPVWIRMAPWSLTFWLSFEQIRHSLGA 558 (561)
Q Consensus 503 ~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~~~~~~~~i~~~~ye~~~~~l~~ 558 (561)
.|++++||+++|+|+||++|||||+.|+++|.+|.++++|.+||.+|+.+..
T Consensus 237 ----~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~ 288 (303)
T 2lck_A 237 ----QYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMA 288 (303)
T ss_dssp ----SCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred ----ccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999999988753
No 2
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=1.6e-54 Score=424.07 Aligned_cols=287 Identities=20% Similarity=0.272 Sum_probs=243.6
Q ss_pred ccccccccchhhhhhhhccchhhHHHHHHHhcccccccccCCCCCCCCcchHHHHHHHHHhhhhhHhccCchHHHHHHHH
Q psy3227 260 SLKRSKSGWKFLLLIPQITYPLDLTKTRLQIQGEAASQATNGDKKLPHRGMVKTGLGIIREEGVSKLWRGVTPALYRHVV 339 (561)
Q Consensus 260 ~~~~~~~g~~a~~~~~~i~~Pld~vktr~q~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~ 339 (561)
.+.++++|+++++++.++++|+|+||+|+|.+.... .......|+++++++++++++||+++||||+.+.+++.+|
T Consensus 7 ~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~----~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~ 82 (297)
T 1okc_A 7 FLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASK----QISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFP 82 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCS----SCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhccccc----ccccccccccHHHHHHHHHhccchhheecccHHHHHHHHH
Confidence 456788999999999999999999999999986421 1112346889999999999999999999999999999999
Q ss_pred hhhhHHHhHHHHHHHHccCCCCC----CchHHHHHHHhhHhhhHhHhcChHHHHHHHHHhccccccCCCCCCCCCHHHHH
Q psy3227 340 YSGCRIVTYEKIRASMSKNRDGT----FPVWKSAISGVSSGALAQFLSSPADLVKVQIQMEGKRQLQGKAPRVHSPWHAF 415 (561)
Q Consensus 340 ~~~~~f~~ye~~~~~~~~~~~~~----~~~~~~~~~g~~ag~~~~~~~~Pld~vktr~q~~~~~~~~~~~~~y~~~~~~~ 415 (561)
..+++|.+||.+++.+....+.. .+....+++|++||++++++++|+|+||+|+|++.... +...+|.++++++
T Consensus 83 ~~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~--~~~~~~~~~~~~~ 160 (297)
T 1okc_A 83 TQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKG--AAQREFTGLGNCI 160 (297)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSS--TTTCSCSSHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCC--CcCcCCCCHHHHH
Confidence 99999999999999542222211 13467899999999999999999999999999985321 2346789999999
Q ss_pred HHHHHhhCccccccCchHHHHHHHHhhhhhHhhHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcCcHHHHHhhhh
Q psy3227 416 QKILSEGGIRGLWKGSIPNVQRAALVNLGDLTTYDTAKHLIISHTSLSDSHLTHVLSSGMAGLVAATMGTPADVVKTRIM 495 (561)
Q Consensus 416 ~~i~~~~G~~glyrG~~~~ll~~~~~~~~~~~~ye~~k~~l~~~~~~~~~~~~~~~~g~~ag~~a~~~t~P~dviktr~q 495 (561)
++|+++||++|||||+.+++++++|.++++|.+||.+|+.+.+. .+.+....+++|++||++++++++|+||||+|||
T Consensus 161 ~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~--~~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q 238 (297)
T 1okc_A 161 TKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP--KNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMM 238 (297)
T ss_dssp HHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG--GCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC--CCccHHHHHHHHHHHHHHHHHhcChHHHHHHHHh
Confidence 99999999999999999999999999999999999999977543 2345677899999999999999999999999999
Q ss_pred cCCCCCCCCccccCcHHHHHHHHHHhhchhhhccchhhHHHHHhhhHHHHHHHHHHHHHHh
Q psy3227 496 NQPTDINGRGLLYKSSLDCLLRTVENEGFLALYKGFLPVWIRMAPWSLTFWLSFEQIRHSL 556 (561)
Q Consensus 496 ~~~~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~~~~~~~~i~~~~ye~~~~~l 556 (561)
++.... .....|++++||+++|+|+||++|||||+.|+++|. +.++++|.+||.+|+++
T Consensus 239 ~~~~~~-~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 239 MQSGRK-GADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp TTTTCC-GGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHHHHHHHHHHTC----
T ss_pred hcCCCC-CCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhh-ccceeeehHHHHHHhhC
Confidence 975432 223469999999999999999999999999999996 56789999999998864
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=2.8e-52 Score=408.20 Aligned_cols=294 Identities=19% Similarity=0.284 Sum_probs=244.9
Q ss_pred CcchHHHHHHHHhhhhhhhhhcchhHHHHHHHHhccccccCCCCCCcCChHHHHHHHHHhhccchhccchhhhHHHHHHh
Q psy3227 123 TFPVWKSAISGVSSGALAQFLSSPADLVKVQIQMEGKRQLQGKAPRVHSPWHAFQKILSEGGIRGLWKGSIPNVQRAALV 202 (561)
Q Consensus 123 ~~~~~~~~~ag~~ag~~~~~i~~Pld~vk~r~q~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~ 202 (561)
..+.+..+++|++||+++.++++|+|+||+|+|++..........+|+++++++++|+++||++|||||+.+++++.+|+
T Consensus 4 ~~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~ 83 (297)
T 1okc_A 4 ALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPT 83 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHH
Confidence 35677899999999999999999999999999998643222223578999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHhhcCCCCcccccccccccCCCCCCCcCCCCchhhhcccCCcccccccccchhhhhhhhccchhh
Q psy3227 203 NLGDLTTYDTAKHLIISHTSLSDSHLTHVLSSNTGLNFEKLPLIHSPAIAQHYRNKPSLKRSKSGWKFLLLIPQITYPLD 282 (561)
Q Consensus 203 ~~~~~~~y~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~i~~Pld 282 (561)
.+++|.+||.+|+.+.......... ..+.+..+++|+++++++.++++|+|
T Consensus 84 ~~~~f~~ye~~k~~~~~~~~~~~~~-----------------------------~~~~~~~~~ag~~ag~~~~~~~~Pld 134 (297)
T 1okc_A 84 QALNFAFKDKYKQIFLGGVDRHKQF-----------------------------WRYFAGNLASGGAAGATSLCFVYPLD 134 (297)
T ss_dssp HHHHHHHHHHHHHHHHTTCCTTTCH-----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCcccch-----------------------------HHHHHHHHHHHHHHHHHHHHHhCcHH
Confidence 9999999999999654321100000 00123456799999999999999999
Q ss_pred HHHHHHHhcccccccccCCCCCCCCcchHHHHHHHHHhhhhhHhccCchHHHHHHHHhhhhHHHhHHHHHHHHccCCCCC
Q psy3227 283 LTKTRLQIQGEAASQATNGDKKLPHRGMVKTGLGIIREEGVSKLWRGVTPALYRHVVYSGCRIVTYEKIRASMSKNRDGT 362 (561)
Q Consensus 283 ~vktr~q~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~~~~~f~~ye~~~~~~~~~~~~~ 362 (561)
+||+|+|.+... ......|.++++++++++++||+++||||+.+++++.+|..+++|.+||.+++.+.+. ..
T Consensus 135 ~vktrlq~~~~~------~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~--~~ 206 (297)
T 1okc_A 135 FARTRLAADVGK------GAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP--KN 206 (297)
T ss_dssp HHHHHHHHCCCS------STTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG--GC
T ss_pred HHHHHHhccccC------CCcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC--CC
Confidence 999999998532 1123468899999999999999999999999999999999999999999999977432 23
Q ss_pred CchHHHHHHHhhHhhhHhHhcChHHHHHHHHHhccccccCCCCCCCCCHHHHHHHHHHhhCccccccCchHHHHHHHHhh
Q psy3227 363 FPVWKSAISGVSSGALAQFLSSPADLVKVQIQMEGKRQLQGKAPRVHSPWHAFQKILSEGGIRGLWKGSIPNVQRAALVN 442 (561)
Q Consensus 363 ~~~~~~~~~g~~ag~~~~~~~~Pld~vktr~q~~~~~~~~~~~~~y~~~~~~~~~i~~~~G~~glyrG~~~~ll~~~~~~ 442 (561)
.+....+++|++||++++++++|+|+||+|||++.... +....|+++++|+++|+++||++|||||+.++++|. +.+
T Consensus 207 ~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~~~~--~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~ 283 (297)
T 1okc_A 207 VHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRK--GADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGG 283 (297)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCC--GGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHH
T ss_pred ccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCC--CCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhh-ccc
Confidence 46778899999999999999999999999999975321 124579999999999999999999999999999996 578
Q ss_pred hhhHhhHHHHHHHH
Q psy3227 443 LGDLTTYDTAKHLI 456 (561)
Q Consensus 443 ~~~~~~ye~~k~~l 456 (561)
+++|.+||.+|+.+
T Consensus 284 ~~~f~~ye~~k~~l 297 (297)
T 1okc_A 284 AFVLVLYDEIKKFV 297 (297)
T ss_dssp HHHHHHHHTC----
T ss_pred eeeehHHHHHHhhC
Confidence 99999999998753
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=1.1e-52 Score=411.73 Aligned_cols=284 Identities=31% Similarity=0.520 Sum_probs=246.6
Q ss_pred HHHHHHhHhhhhhhhhccchHHHHHHHHhcccccccccCCCCCCCCcchhHHHHHHHHhhhhhhhhcChhhHHHhhhhhh
Q psy3227 23 CTYIVSVAAACVAEVITYPLDLTKTRLQIQGEAASQATNGDKKLPHRGMVKTGLGIIREEGVSKLWRGVTPALYRHVVYS 102 (561)
Q Consensus 23 ~~~~ag~~ag~~~~~~~~Pld~vKtr~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~~lyrG~~~~l~~~~~~~ 102 (561)
.++++|++||+++.+++||||+||+|+|++....... .......|+++++++++|+++||+++||||+.+++++.+++.
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~ 81 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLV-RTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFA 81 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHH-HHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhcccccc-ccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHH
Confidence 4689999999999999999999999999986532100 001123588999999999999999999999999999999999
Q ss_pred hHHHHhHHHHHHhhccCCCCCcchHHHHHHHHhhhhhhhhhcchhHHHHHHHHhccccccCCCCCCcCChHHHHHHHHHh
Q psy3227 103 GCRIVTYEKIRASMSKNRDGTFPVWKSAISGVSSGALAQFLSSPADLVKVQIQMEGKRQLQGKAPRVHSPWHAFQKILSE 182 (561)
Q Consensus 103 ~~~f~~y~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~i~~Pld~vk~r~q~~~~~~~~~~~~~~~~~~~~~~~i~~~ 182 (561)
+++|.+||.+|+.+.+..+ ..+....+++|++||+++.++++|+|+||+|+|++... +...+|++.++++++|+++
T Consensus 82 ~i~f~~ye~~k~~~~~~~~-~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~---~~~~~~~~~~~~~~~i~~~ 157 (303)
T 2lck_A 82 SVRIGLYDSVKQFYTKGSE-HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARA---GGGRRYQSTVEAYKTIARE 157 (303)
T ss_dssp HHTTTHHHHHHHHHSCCCS-SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSC---CCSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCc-CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhccccc---CCCCCCCCHHHHHHHHHHh
Confidence 9999999999998865422 46788899999999999999999999999999998642 2345789999999999999
Q ss_pred hccchhccchhhhHHHHHHhhhhhHHHHHHHHHHHHhhcCCCCcccccccccccCCCCCCCcCCCCchhhhcccCCcccc
Q psy3227 183 GGIRGLWKGSIPNVQRAALVNLGDLTTYDTAKHLIISHTSLSDSHLTHVLSSNTGLNFEKLPLIHSPAIAQHYRNKPSLK 262 (561)
Q Consensus 183 eG~~glyrG~~~~l~~~~~~~~~~~~~y~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (561)
||++|||||+.+++++.+|+.+++|.+||.+|+.+.+.... ..+...
T Consensus 158 eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~~---------------------------------~~~~~~ 204 (303)
T 2lck_A 158 EGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLM---------------------------------TDDLPC 204 (303)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSC---------------------------------CSCHHH
T ss_pred cChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccCC---------------------------------CCchHH
Confidence 99999999999999999999999999999999876532110 011234
Q ss_pred cccccchhhhhhhhccchhhHHHHHHHhcccccccccCCCCCCCCcchHHHHHHHHHhhhhhHhccCchHHHHHHHHhhh
Q psy3227 263 RSKSGWKFLLLIPQITYPLDLTKTRLQIQGEAASQATNGDKKLPHRGMVKTGLGIIREEGVSKLWRGVTPALYRHVVYSG 342 (561)
Q Consensus 263 ~~~~g~~a~~~~~~i~~Pld~vktr~q~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~~~ 342 (561)
.+++|+++++++.++++|+|+||+|+|.+... .|.++++++++++++||+++||||+.|++++.+|..+
T Consensus 205 ~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~~-----------~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~ 273 (303)
T 2lck_A 205 HFTSAFGAGFCTTVIASPVDVVKTRYMNSALG-----------QYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNV 273 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSS-----------SCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHhcccc-----------ccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHH
Confidence 56799999999999999999999999987542 5889999999999999999999999999999999999
Q ss_pred hHHHhHHHHHHHH
Q psy3227 343 CRIVTYEKIRASM 355 (561)
Q Consensus 343 ~~f~~ye~~~~~~ 355 (561)
++|.+||.+++.+
T Consensus 274 i~f~~ye~~k~~l 286 (303)
T 2lck_A 274 VMFVTYEQLKRAL 286 (303)
T ss_dssp HHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999876
No 5
>3vjj_A P9-1; 3.00A {Rice black streaked dwarf virus}
Probab=19.29 E-value=55 Score=29.54 Aligned_cols=36 Identities=17% Similarity=0.256 Sum_probs=26.8
Q ss_pred HHHHhhcCcHHHHHhhhhcCCCCCCCCccccCcHHHHHHHHHHhhch
Q psy3227 478 LVAATMGTPADVVKTRIMNQPTDINGRGLLYKSSLDCLLRTVENEGF 524 (561)
Q Consensus 478 ~~a~~~t~P~dviktr~q~~~~~~~~~~~~y~~~~~~~~~i~~~eG~ 524 (561)
.+|++--||||.+|-.++.- .++...+++.+.++|+
T Consensus 273 qLaTFdnypfdllRfqL~Sl-----------istp~~I~e~i~K~GL 308 (368)
T 3vjj_A 273 QLATFDNYPFDLLRFQLSSL-----------ISTPALIREKIAKEGL 308 (368)
T ss_dssp HHHHCTTCBHHHHHHHCSSC-----------CCCCHHHHHHHHHSCS
T ss_pred eeecCCCCCHHHHHHHhhhh-----------ccChHHHHHHHHhcCc
Confidence 56778899999998766553 2344678888888884
No 6
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=17.79 E-value=19 Score=23.98 Aligned_cols=20 Identities=25% Similarity=0.471 Sum_probs=17.4
Q ss_pred CcHHHHHHHHHHhhchhhhc
Q psy3227 509 KSSLDCLLRTVENEGFLALY 528 (561)
Q Consensus 509 ~~~~~~~~~i~~~eG~~gly 528 (561)
+++.+.+..||+++|+.||+
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 56888999999999998876
No 7
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=17.20 E-value=2.1e+02 Score=18.60 Aligned_cols=16 Identities=44% Similarity=0.437 Sum_probs=12.2
Q ss_pred cchHHHHHHHHhcccc
Q psy3227 40 YPLDLTKTRLQIQGEA 55 (561)
Q Consensus 40 ~Pld~vKtr~Q~~~~~ 55 (561)
+-|..||||+|.-+..
T Consensus 9 qrlaaiktrlqalggs 24 (73)
T 2a3d_A 9 QRLAAIKTRLQALGGS 24 (73)
T ss_dssp HHHHHHHHHHHHCSSG
T ss_pred HHHHHHHHHHHHhcCc
Confidence 4567899999987653
No 8
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=16.64 E-value=1.2e+02 Score=21.90 Aligned_cols=33 Identities=15% Similarity=0.225 Sum_probs=26.2
Q ss_pred chhhhccchhhHHHHHhhhHHHHHHHHHHHHHH
Q psy3227 523 GFLALYKGFLPVWIRMAPWSLTFWLSFEQIRHS 555 (561)
Q Consensus 523 G~~glyrG~~~~~~~~~~~~~i~~~~ye~~~~~ 555 (561)
|+...+|-+...++.++|..++.+.+|+..++.
T Consensus 33 ~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ 65 (81)
T 3tgu_G 33 ALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQE 65 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHH
Confidence 455566666788899999999999999987654
No 9
>1y9i_A Low temperature requirement C protein; structural genomics, protein structure initiative, PSI; 1.80A {Listeria monocytogenes} SCOP: a.195.1.1
Probab=14.83 E-value=1.1e+02 Score=25.89 Aligned_cols=41 Identities=12% Similarity=0.131 Sum_probs=27.6
Q ss_pred hhhhHhhHHHHHHHHhhcCCCC-----CchhHHHHHHHHHHHHHHh
Q psy3227 442 NLGDLTTYDTAKHLIISHTSLS-----DSHLTHVLSSGMAGLVAAT 482 (561)
Q Consensus 442 ~~~~~~~ye~~k~~l~~~~~~~-----~~~~~~~~~g~~ag~~a~~ 482 (561)
..+.|..||..|.+.....+.. .....++++|..|++++.+
T Consensus 113 gf~~Fr~fDi~KPgpI~~ld~~~~gg~gimlDDivAgi~A~~~~~l 158 (178)
T 1y9i_A 113 GFTNYGYIDKVKPGILAKLNEHDGIAVHTFLDDIVGAIAAAAASRL 158 (178)
T ss_dssp GHHHHHHHHHHCCTHHHHTTCCCSSCCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccchhHHhhhcccCCCCcchHHHHHHHHHHHHHHHH
Confidence 3345778899887665544332 2467789999888886644
No 10
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=12.41 E-value=1.9e+02 Score=20.87 Aligned_cols=34 Identities=18% Similarity=0.301 Sum_probs=28.2
Q ss_pred hchhhhccchhhHHHHHhhhHHHHHHHHHHHHHH
Q psy3227 522 EGFLALYKGFLPVWIRMAPWSLTFWLSFEQIRHS 555 (561)
Q Consensus 522 eG~~glyrG~~~~~~~~~~~~~i~~~~ye~~~~~ 555 (561)
.|+...+|-+.-+++.++|..++++.+|+...+.
T Consensus 32 ~~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~ 65 (81)
T 1pp9_G 32 KGIPNVLRRTRACILRVAPPFVAFYLVYTWGTQE 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHhcceeeehhHHHHHHHHHHHHHH
Confidence 4667777888888889999999999999987664
Done!