RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3227
(561 letters)
>gnl|CDD|215754 pfam00153, Mito_carr, Mitochondrial carrier protein.
Length = 96
Score = 93.9 bits (234), Expect = 3e-23
Identities = 35/94 (37%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 463 SDSHLTHVLSSGMAGLVAATMGTPADVVKTRIMNQPTDINGRGLLYKSSLDCLLRTVENE 522
S L +L+ G+AG +AAT+ P DVVKTR+ + G YK LDC + + E
Sbjct: 2 PLSFLASLLAGGIAGAIAATVTYPLDVVKTRLQSSAA---GGSRKYKGILDCFKKIYKEE 58
Query: 523 GFLALYKGFLPVWIRMAPWSLTFWLSFEQIRHSL 556
G LYKG LP +R+AP + ++ ++E ++ L
Sbjct: 59 GIRGLYKGLLPNLLRVAPAAAIYFGTYETLKKLL 92
Score = 86.2 bits (214), Expect = 2e-20
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
Query: 122 GTFPVWKSAISGVSSGALAQFLSSPADLVKVQIQMEGKRQLQGKAPRVHSPWHAFQKILS 181
S ++G +GA+A ++ P D+VK ++Q G + + F+KI
Sbjct: 1 SPLSFLASLLAGGIAGAIAATVTYPLDVVKTRLQS----SAAGGSRKYKGILDCFKKIYK 56
Query: 182 EGGIRGLWKGSIPNVQRAALVNLGDLTTYDTAKHLIISH 220
E GIRGL+KG +PN+ R A TY+T K L++
Sbjct: 57 EEGIRGLYKGLLPNLLRVAPAAAIYFGTYETLKKLLLKK 95
Score = 86.2 bits (214), Expect = 2e-20
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
Query: 361 GTFPVWKSAISGVSSGALAQFLSSPADLVKVQIQMEGKRQLQGKAPRVHSPWHAFQKILS 420
S ++G +GA+A ++ P D+VK ++Q G + + F+KI
Sbjct: 1 SPLSFLASLLAGGIAGAIAATVTYPLDVVKTRLQS----SAAGGSRKYKGILDCFKKIYK 56
Query: 421 EGGIRGLWKGSIPNVQRAALVNLGDLTTYDTAKHLIISH 459
E GIRGL+KG +PN+ R A TY+T K L++
Sbjct: 57 EEGIRGLYKGLLPNLLRVAPAAAIYFGTYETLKKLLLKK 95
Score = 80.0 bits (198), Expect = 2e-18
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 8/100 (8%)
Query: 20 SVWCTYIVSVAAACVAEVITYPLDLTKTRLQIQGEAASQATNGDKKLPHRGMVKTGLGII 79
S + + A +A +TYPLD+ KTRLQ S+ ++G++ I
Sbjct: 4 SFLASLLAGGIAGAIAATVTYPLDVVKTRLQSSAAGGSR--------KYKGILDCFKKIY 55
Query: 80 REEGVSKLWRGVTPALYRHVVYSGCRIVTYEKIRASMSKN 119
+EEG+ L++G+ P L R + TYE ++ + K
Sbjct: 56 KEEGIRGLYKGLLPNLLRVAPAAAIYFGTYETLKKLLLKK 95
Score = 72.7 bits (179), Expect = 9e-16
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
Query: 277 ITYPLDLTKTRLQIQGEAASQATNGDKKLPHRGMVKTGLGIIREEGVSKLWRGVTPALYR 336
+TYPLD+ KTRLQ S+ ++G++ I +EEG+ L++G+ P L R
Sbjct: 22 VTYPLDVVKTRLQSSAAGGSR--------KYKGILDCFKKIYKEEGIRGLYKGLLPNLLR 73
Query: 337 HVVYSGCRIVTYEKIRASMSKN 358
+ TYE ++ + K
Sbjct: 74 VAPAAAIYFGTYETLKKLLLKK 95
>gnl|CDD|240302 PTZ00169, PTZ00169, ADP/ATP transporter on adenylate translocase;
Provisional.
Length = 300
Score = 69.8 bits (171), Expect = 5e-13
Identities = 68/282 (24%), Positives = 106/282 (37%), Gaps = 51/282 (18%)
Query: 280 PLDLTKTRLQIQGEAASQATNGDKKLPHRGMVKTGLGII-------REEGVSKLWRGVTP 332
P++ K +Q +Q + + K G V GI+ +E+GV LWRG T
Sbjct: 27 PIERVKMLIQ------TQDSIPEIK---SGKVPRYSGIVNCFRRVSKEQGVLSLWRGNTA 77
Query: 333 ALYRHVVYSGCRIVTYEKIRASMSK-NRDGTFPVWKSAISGVSSGALAQFLSS----PAD 387
+ R+ + + K N+ F WK + SG LA S P D
Sbjct: 78 NVIRYFPTQAFNFAFKDYFKNMFPKYNQKTDF--WKFFGVNILSGGLAGASSLLIVYPLD 135
Query: 388 LVKVQ----IQMEGKRQLQGKAPRVHSPWHAFQKILSEGGIRGLWKGSIPNVQ-----RA 438
+ + I G R+ G + KI + G L++G +VQ R
Sbjct: 136 FARTRLASDIGKGGDREFTGL-------FDCLMKISKQTGFLSLYQGFGVSVQGIIVYRG 188
Query: 439 ALVNLGDLTTYDTAKHLIISHTSLSDSHLTHVLSSGMAGLVAATMGT---PADVVKTRIM 495
A L YD+AK L+ +D + + +A V G P D V+ R+M
Sbjct: 189 AYFGL-----YDSAKALLFG----NDKNTNILYKWAVAQTVTILAGLISYPFDTVRRRMM 239
Query: 496 NQPTDINGRGLLYKSSLDCLLRTVENEGFLALYKGFLPVWIR 537
+ Y +LDC + ++NEG +KG +R
Sbjct: 240 MMSGRKAKSEIQYTGTLDCWKKILKNEGLGGFFKGAWANVLR 281
Score = 67.9 bits (166), Expect = 2e-12
Identities = 56/212 (26%), Positives = 95/212 (44%), Gaps = 20/212 (9%)
Query: 13 PAYNYADSVWCTYIVSVA----AACVAEVITYPLDLTKTRLQIQGEAASQATNGDKKLPH 68
P YN W + V++ A + +I YPLD +TRL A+ GD++
Sbjct: 101 PKYNQKTDFWKFFGVNILSGGLAGASSLLIVYPLDFARTRL-----ASDIGKGGDREF-- 153
Query: 69 RGMVKTGLGIIREEGVSKLWRGVTPALYRHVVYSGCRIVTYEKIRASMSKNRDGTFPVWK 128
G+ + I ++ G L++G ++ +VY G Y+ +A + N T ++K
Sbjct: 154 TGLFDCLMKISKQTGFLSLYQGFGVSVQGIIVYRGAYFGLYDSAKALLFGNDKNTNILYK 213
Query: 129 SAISGVSSGALAQFLSSPADLVKVQIQMEGKRQLQGKAPRVHSPWHAFQKILSEGGIRGL 188
A++ + LA +S P D V+ ++ M R+ + ++KIL G+ G
Sbjct: 214 WAVAQ-TVTILAGLISYPFDTVRRRMMMMSGRK-AKSEIQYTGTLDCWKKILKNEGLGGF 271
Query: 189 WKGSIPNVQR---AALVNLGDLTTYDTAKHLI 217
+KG+ NV R ALV L YD + L+
Sbjct: 272 FKGAWANVLRGAGGALV----LVFYDELQKLL 299
Score = 66.3 bits (162), Expect = 6e-12
Identities = 81/331 (24%), Positives = 139/331 (41%), Gaps = 48/331 (14%)
Query: 131 ISGVSSGALAQFLSSPADLVKVQIQMEGKRQ--LQGKAPRVHSPWHAFQKILSEGGIRGL 188
+ G S A+++ +P + VK+ IQ + GK PR + F+++ E G+ L
Sbjct: 12 LMGGISAAISKTAVAPIERVKMLIQTQDSIPEIKSGKVPRYSGIVNCFRRVSKEQGVLSL 71
Query: 189 WKGSIPNVQRAALVNLGDLTTYDTAKHLIISHTSLSDSHLTHVLSSNTGLNFEKLPLIHS 248
W+G+ NV R + D K++ + +D G+N I S
Sbjct: 72 WRGNTANVIRYFPTQAFNFAFKDYFKNMFPKYNQKTD------FWKFFGVN------ILS 119
Query: 249 PAIAQHYRNKPSLKRSKSGWKFLLLIPQITYPLDLTKTRLQIQGEAASQATNGDKKLPHR 308
+A G LL++ YPLD +TRL A+ GD++
Sbjct: 120 GGLA--------------GASSLLIV----YPLDFARTRL-----ASDIGKGGDREF--T 154
Query: 309 GMVKTGLGIIREEGVSKLWRGVTPALYRHVVYSGCRIVTYEKIRASMSKNRDGTFPVWKS 368
G+ + I ++ G L++G ++ +VY G Y+ +A + N T ++K
Sbjct: 155 GLFDCLMKISKQTGFLSLYQGFGVSVQGIIVYRGAYFGLYDSAKALLFGNDKNTNILYKW 214
Query: 369 AISGVSSGALAQFLSSPADLVKVQIQMEGKRQLQGKAPRVHSPWHAFQKILSEGGIRGLW 428
A++ + LA +S P D V+ ++ M R+ + ++KIL G+ G +
Sbjct: 215 AVAQ-TVTILAGLISYPFDTVRRRMMMMSGRK-AKSEIQYTGTLDCWKKILKNEGLGGFF 272
Query: 429 KGSIPNVQR---AALVNLGDLTTYDTAKHLI 456
KG+ NV R ALV L YD + L+
Sbjct: 273 KGAWANVLRGAGGALV----LVFYDELQKLL 299
Score = 43.2 bits (102), Expect = 2e-04
Identities = 50/214 (23%), Positives = 82/214 (38%), Gaps = 44/214 (20%)
Query: 25 YIVSVAAACVAEVITYPLDLTKTRLQIQGEAASQATNGDKKLPHRGMVKTGLGII----- 79
+++ +A +++ P++ K +Q +Q + + K G V GI+
Sbjct: 11 FLMGGISAAISKTAVAPIERVKMLIQ------TQDSIPEIK---SGKVPRYSGIVNCFRR 61
Query: 80 --REEGVSKLWRGVTPALYRHVVYSGCRIVTYEKIRASMSK-NRDGTFPVWKSAISGVSS 136
+E+GV LWRG T + R+ + + K N+ F WK + S
Sbjct: 62 VSKEQGVLSLWRGNTANVIRYFPTQAFNFAFKDYFKNMFPKYNQKTDF--WKFFGVNILS 119
Query: 137 GALAQFLSS----PADLVKVQ----IQMEGKRQLQGKAPRVHSPWHAFQKILSEGGIRGL 188
G LA S P D + + I G R+ G + KI + G L
Sbjct: 120 GGLAGASSLLIVYPLDFARTRLASDIGKGGDREFTGL-------FDCLMKISKQTGFLSL 172
Query: 189 WKGSIPNVQ-----RAALVNLGDLTTYDTAKHLI 217
++G +VQ R A L YD+AK L+
Sbjct: 173 YQGFGVSVQGIIVYRGAYFGL-----YDSAKALL 201
Score = 35.1 bits (81), Expect = 0.070
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 465 SHLTHVLSSGMAGLVAATMGTPADVVKTRIMNQ---PTDINGRGLLYKSSLDCLLRTVEN 521
+ T L G++ ++ T P + VK I Q P +G+ Y ++C R +
Sbjct: 6 NFATDFLMGGISAAISKTAVAPIERVKMLIQTQDSIPEIKSGKVPRYSGIVNCFRRVSKE 65
Query: 522 EGFLALYKGFLPVWIRMAP 540
+G L+L++G IR P
Sbjct: 66 QGVLSLWRGNTANVIRYFP 84
>gnl|CDD|185494 PTZ00168, PTZ00168, mitochondrial carrier protein; Provisional.
Length = 259
Score = 37.6 bits (87), Expect = 0.011
Identities = 32/144 (22%), Positives = 66/144 (45%), Gaps = 19/144 (13%)
Query: 25 YIVSVAAACV-AEVITYPLDLTKTRLQIQGEAASQATNGDKKLPHRGMVKTGLGIIREEG 83
Y++S + A + A ++ P ++ K +Q+ G + ++KT I + EG
Sbjct: 87 YLISTSIAEITACIVRLPFEIVKQNMQVSGNIS--------------VLKTIYEITQREG 132
Query: 84 V-SKLWRGVTPALYRHVVYSGCRIVTYEKIRASMSK---NRDGTFPVWKSAISGVSSGAL 139
+ S L + + R + + + +E ++ K +P SAI G +G +
Sbjct: 133 LPSFLGKSYFVMIVREIPFDCIQYFLWETLKEKAKKDFGKFSKKYPSITSAICGGLAGGI 192
Query: 140 AQFLSSPADLVKVQIQMEGKRQLQ 163
A FL++P D++K + + GK ++
Sbjct: 193 AGFLTTPVDVIKSRQIIYGKSYIE 216
Score = 37.2 bits (86), Expect = 0.017
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 11/64 (17%)
Query: 467 LTHVLSSGMAGLVAATMGTPADVVKTRIMNQPTDINGRGLLYKSSLDCLLRTVENEGFLA 526
+T + G+AG +A + TP DV+K+ R ++Y S + + EG+L
Sbjct: 180 ITSAICGGLAGGIAGFLTTPVDVIKS-----------RQIIYGKSYIETVTEIAEEGYLT 228
Query: 527 LYKG 530
YKG
Sbjct: 229 FYKG 232
Score = 32.2 bits (73), Expect = 0.52
Identities = 28/130 (21%), Positives = 57/130 (43%), Gaps = 18/130 (13%)
Query: 277 ITYPLDLTKTRLQIQGEAASQATNGDKKLPHRGMVKTGLGIIREEGV-SKLWRGVTPALY 335
+ P ++ K +Q+ G + ++KT I + EG+ S L + +
Sbjct: 101 VRLPFEIVKQNMQVSGNIS--------------VLKTIYEITQREGLPSFLGKSYFVMIV 146
Query: 336 RHVVYSGCRIVTYEKIRASMSK---NRDGTFPVWKSAISGVSSGALAQFLSSPADLVKVQ 392
R + + + +E ++ K +P SAI G +G +A FL++P D++K +
Sbjct: 147 REIPFDCIQYFLWETLKEKAKKDFGKFSKKYPSITSAICGGLAGGIAGFLTTPVDVIKSR 206
Query: 393 IQMEGKRQLQ 402
+ GK ++
Sbjct: 207 QIIYGKSYIE 216
Score = 28.7 bits (64), Expect = 7.9
Identities = 37/194 (19%), Positives = 76/194 (39%), Gaps = 42/194 (21%)
Query: 367 KSAISGVSSGALAQFLSSPADLVKVQIQMEGKRQLQGKAPRVHSPWHAFQKILSEGGIRG 426
+ ++G SG + + P D +K IQ +K S I+
Sbjct: 5 HNLVTGALSGVIVDAVLYPIDSIKTNIQA--------------------KKSFSFSDIKK 44
Query: 427 LWKGSIPNVQRAALVNLGDLTTYDTAKHLI------ISHTSLSDSHLTHVLSSGMAGLVA 480
L+ G +P + + Y+ +K L+ IS T+L +++S+ +A + A
Sbjct: 45 LYSGILPTLVGTVPASAFFYCFYELSKKLLTEYRENISKTNL------YLISTSIAEITA 98
Query: 481 ATMGTPADVVKTRIMNQPTDINGRGLLYKSSLDCLLRTVENEGFLA-LYKGFLPVWIRMA 539
+ P ++VK + ++G S L + + EG + L K + + +R
Sbjct: 99 CIVRLPFEIVKQNM-----QVSGN----ISVLKTIYEITQREGLPSFLGKSYFVMIVREI 149
Query: 540 PWSLTFWLSFEQIR 553
P+ + +E ++
Sbjct: 150 PFDCIQYFLWETLK 163
>gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional.
Length = 1809
Score = 31.7 bits (72), Expect = 1.2
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Query: 216 LIISHTSLSDSHLTHVLSSNTGLNFEKLPLIHSPAIAQHYRNKPSLKRSKSGWKFLL--L 273
++I HT +S+ +L+ +LSS T L F S + Y + GW+ L
Sbjct: 1135 IVIQHTKISEKNLSSLLSSLT-LAFSLSS---SICLHIEYAGTSLSLTYRLGWQDSSGNL 1190
Query: 274 IPQITYPL 281
P IT PL
Sbjct: 1191 YPNITTPL 1198
>gnl|CDD|188368 TIGR03679, arCOG00187, arCOG00187 universal archaeal
metal-binding-domain/4Fe-4S-binding-domain containing
ABC transporter, ATP-binding protein. This protein
consists of an N-terminal possible metal-binding domain
(pfam04068) followed by a 4Fe-4S cluster binding domain
(pfam00037) followed by a C-terminal ABC transporter,
ATP-binding domain (pfam00005). This combination of
N-terminal domains is observed in the RNase L inhibitor,
RLI. This model has the same scope as an archaeal COG
(arCOG00187) and is found in all completely sequenced
archaea and does not recognize any known non-archaeal
genes.
Length = 218
Score = 28.8 bits (65), Expect = 6.1
Identities = 10/40 (25%), Positives = 17/40 (42%)
Query: 453 KHLIISHTSLSDSHLTHVLSSGMAGLVAATMGTPADVVKT 492
LI DS++ H + + L A +G P ++T
Sbjct: 25 TCLITVVPENEDSYMFHTPNIELTRLQAEALGIPLVEIET 64
>gnl|CDD|218386 pfam05021, NPL4, NPL4 family. The HRD4 gene was identical to NPL4,
a gene previously implicated in nuclear transport. Using
a diverse set of substrates and direct ubiquitination
assays, analysis revealed that HRD4/NPL4 is required for
a poorly characterized step in ER-associated degradation
after ubiquitination of target proteins but before their
recognition by the 26S proteasome. Npl4p physically
associates with Cdc48p via Ufd1p to form a
Cdc48p-Ufd1p-Npl4p complex. The Cdc48-Ufd1-Npl4 complex
functions in the recognition of several
polyubiquitin-tagged proteins and facilitates their
presentation to the 26S proteasome for processive
degradation or even more specific processing.
Length = 306
Score = 28.8 bits (65), Expect = 7.5
Identities = 18/77 (23%), Positives = 27/77 (35%), Gaps = 7/77 (9%)
Query: 204 LGDLTTYDT-AKHL-----IISHTSLSDSHLTHVLSSNTGLNFEKLPLIHSPAIAQHYRN 257
+G+ AK+L LSD HL L+ L+ + L+ A+
Sbjct: 229 MGESQDLRALAKYLKSHKPKPFLERLSDFHLLLFLAKLGILDISEAKLL-CEAVRTKDEE 287
Query: 258 KPSLKRSKSGWKFLLLI 274
GW+ LL I
Sbjct: 288 DALQLSKSEGWQTLLDI 304
>gnl|CDD|223364 COG0287, TyrA, Prephenate dehydrogenase [Amino acid transport and
metabolism].
Length = 279
Score = 28.4 bits (64), Expect = 9.8
Identities = 25/88 (28%), Positives = 32/88 (36%), Gaps = 21/88 (23%)
Query: 465 SHLTHVLSSGMAGLVAATMGTPADVVK---------TRIMNQ----PTDI---NGRGLL- 507
SHL H + +A +A V+K TRI + DI N LL
Sbjct: 182 SHLPHAAALALANALAKLETEELLVLKLASGGFRDITRIASSDPEMYADIQLSNKEALLE 241
Query: 508 ----YKSSLDCLLRTVENEGFLALYKGF 531
+ SLD L +EN AL F
Sbjct: 242 AIERFAKSLDELKELIENGDAEALADLF 269
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.133 0.401
Gapped
Lambda K H
0.267 0.0729 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 27,927,315
Number of extensions: 2678572
Number of successful extensions: 1959
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1943
Number of HSP's successfully gapped: 20
Length of query: 561
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 459
Effective length of database: 6,413,494
Effective search space: 2943793746
Effective search space used: 2943793746
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (27.7 bits)