RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3227
(561 letters)
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton
translocator, mitochondrial carrier transport protein,
structural genomics; NMR {Mus musculus}
Length = 303
Score = 338 bits (870), Expect = e-113
Identities = 97/284 (34%), Positives = 151/284 (53%), Gaps = 11/284 (3%)
Query: 277 ITYPLDLTKTRLQIQGEAASQATNGDKKLPHRGMVKTGLGIIREEGVSKLWRGVTPALYR 336
IT+PLD K RLQIQGE+ +RG++ T L ++R EG L+ G+ L R
Sbjct: 18 ITFPLDTAKVRLQIQGESQG-LVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQR 76
Query: 337 HVVYSGCRIVTYEKIRASMSKNRDGTFPVWKSAISGVSSGALAQFLSSPADLVKVQIQME 396
+ ++ RI Y+ ++ +K + ++G ++GALA ++ P D+VKV+ Q +
Sbjct: 77 QMSFASVRIGLYDSVKQFYTKG-SEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQ 135
Query: 397 GKRQLQGKAPRVHSPWHAFQKILSEGGIRGLWKGSIPNVQRAALVNLGDLTTYDTAKHLI 456
+ G R S A++ I E GIRGLWKG+ PNV R A+VN +L TYD K +
Sbjct: 136 ARA---GGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTL 192
Query: 457 ISHTSLSDSHLTHVLSSGMAGLVAATMGTPADVVKTRIMNQPTDINGRGLLYKSSLDCLL 516
+ ++D H S+ AG + +P DVVKTR MN Y S+ C L
Sbjct: 193 LKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALG------QYHSAGHCAL 246
Query: 517 RTVENEGFLALYKGFLPVWIRMAPWSLTFWLSFEQIRHSLGATG 560
+ EG A YKGF+P ++R+ W++ ++++EQ++ +L A
Sbjct: 247 TMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAAY 290
Score = 258 bits (660), Expect = 3e-82
Identities = 90/334 (26%), Positives = 150/334 (44%), Gaps = 49/334 (14%)
Query: 25 YIVSVAAACVAEVITYPLDLTKTRLQIQGEAASQATNGDKKLPHRGMVKTGLGIIREEGV 84
++ + AAC+A++IT+PLD K RLQIQGE+ +RG++ T L ++R EG
Sbjct: 5 FLGAGTAACIADLITFPLDTAKVRLQIQGESQG-LVRTAASAQYRGVLGTILTMVRTEGP 63
Query: 85 SKLWRGVTPALYRHVVYSGCRIVTYEKIRASMSKNRDGTFPVWKSAISGVSSGALAQFLS 144
L+ G+ L R + ++ RI Y+ ++ +K + ++G ++GALA ++
Sbjct: 64 RSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKG-SEHAGIGSRLLAGSTTGALAVAVA 122
Query: 145 SPADLVKVQIQMEGKRQLQGKAPRVHSPWHAFQKILSEGGIRGLWKGSIPNVQRAALVNL 204
P D+VKV+ Q + + G R S A++ I E GIRGLWKG+ PNV R A+VN
Sbjct: 123 QPTDVVKVRFQAQARA---GGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNC 179
Query: 205 GDLTTYDTAKHLIISHTSLSDSHLTHVLSSNTGLNFEKLPLIHSPAIAQHYRNKPSLKRS 264
+L TYD K ++ ++D H S+
Sbjct: 180 AELVTYDLIKDTLLKANLMTDDLPCHFTSAFG---------------------------- 211
Query: 265 KSGWKFLLLIPQITYPLDLTKTRLQIQGEAASQATNGDKKLPHRGMVKTGLGIIREEGVS 324
+G I P+D+ KTR + L ++R+EG
Sbjct: 212 -AG----FCTTVIASPVDVVKTRYMNS-----------ALGQYHSAGHCALTMLRKEGPR 255
Query: 325 KLWRGVTPALYRHVVYSGCRIVTYEKIRASMSKN 358
++G P+ R ++ VTYE+++ ++
Sbjct: 256 AFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAA 289
Score = 158 bits (401), Expect = 3e-44
Identities = 69/342 (20%), Positives = 125/342 (36%), Gaps = 51/342 (14%)
Query: 131 ISGVSSGALAQFLSSPADLVKV--QIQMEGKRQLQGKAPRVH-SPWHAFQKILSEGGIRG 187
+ ++ +A ++ P D KV QIQ E + ++ A + ++ G R
Sbjct: 6 LGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRS 65
Query: 188 LWKGSIPNVQRAALVNLGDLTTYDTAKHLIISHTSLSDSHLTHVLSSNTGLNFEKLPLIH 247
L+ G + +QR + YD+ K + + + S TG
Sbjct: 66 LYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTG---------- 115
Query: 248 SPAIAQHYRNKPSLKRSKSGWKFLLLIPQITYPLDLTKTRLQIQGEAASQATNGDKKLPH 307
A+A + P D+ K R Q Q A +
Sbjct: 116 --ALAVA----------------------VAQPTDVVKVRFQAQARAGGGR-------RY 144
Query: 308 RGMVKTGLGIIREEGVSKLWRGVTPALYRHVVYSGCRIVTYEKIRASMSKNRDGTFPVWK 367
+ V+ I REEG+ LW+G +P + R+ + + +VTY+ I+ ++ K T +
Sbjct: 145 QSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPC 204
Query: 368 SAISGVSSGALAQFLSSPADLVKVQIQMEGKRQLQGKAPRVHSPWHAFQKILSEGGIRGL 427
S +G ++SP D+VK + Q H +L + G R
Sbjct: 205 HFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQYHS-------AGHCALTMLRKEGPRAF 257
Query: 428 WKGSIPNVQRAALVNLGDLTTYDTAKHLIISHTSLSDSHLTH 469
+KG +P+ R N+ TY+ K +++ ++ H
Sbjct: 258 YKGFMPSFLRLGSWNVVMFVTYEQLKRALMAAYQSREAPFHH 299
Score = 126 bits (318), Expect = 1e-32
Identities = 46/211 (21%), Positives = 84/211 (39%), Gaps = 14/211 (6%)
Query: 20 SVWCTYIVSVAAACVAEVITYPLDLTKTRLQIQGEAASQATNGDKKLPHRGMVKTGLGII 79
+ + +A + P D+ K R Q Q A ++ V+ I
Sbjct: 103 GIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGR-------RYQSTVEAYKTIA 155
Query: 80 REEGVSKLWRGVTPALYRHVVYSGCRIVTYEKIRASMSKNRDGTFPVWKSAISGVSSGAL 139
REEG+ LW+G +P + R+ + + +VTY+ I+ ++ K T + S +G
Sbjct: 156 REEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFC 215
Query: 140 AQFLSSPADLVKVQIQMEGKRQLQGKAPRVHSPWHAFQKILSEGGIRGLWKGSIPNVQRA 199
++SP D+VK + Q H +L + G R +KG +P+ R
Sbjct: 216 TTVIASPVDVVKTRYMNSALGQYHS-------AGHCALTMLRKEGPRAFYKGFMPSFLRL 268
Query: 200 ALVNLGDLTTYDTAKHLIISHTSLSDSHLTH 230
N+ TY+ K +++ ++ H
Sbjct: 269 GSWNVVMFVTYEQLKRALMAAYQSREAPFHH 299
Score = 120 bits (302), Expect = 2e-30
Identities = 43/195 (22%), Positives = 78/195 (40%), Gaps = 6/195 (3%)
Query: 370 ISGVSSGALAQFLSSPADLVKV--QIQMEGKRQLQGKAPRVH-SPWHAFQKILSEGGIRG 426
+ ++ +A ++ P D KV QIQ E + ++ A + ++ G R
Sbjct: 6 LGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRS 65
Query: 427 LWKGSIPNVQRAALVNLGDLTTYDTAKHLIISHTSLSDSHLTHVLSSGMAGLVAATMGTP 486
L+ G + +QR + YD+ K + + +L+ G +A + P
Sbjct: 66 LYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSE-HAGIGSRLLAGSTTGALAVAVAQP 124
Query: 487 ADVVKTRIMNQPTDINGRGLLYKSSLDCLLRTVENEGFLALYKGFLPVWIRMAPWSLTFW 546
DVVK R Q GR Y+S+++ EG L+KG P R A +
Sbjct: 125 TDVVKVRFQAQARAGGGRR--YQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAEL 182
Query: 547 LSFEQIRHSLGATGF 561
++++ I+ +L
Sbjct: 183 VTYDLIKDTLLKANL 197
Score = 68.9 bits (169), Expect = 5e-13
Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 6/94 (6%)
Query: 468 THVLSSGMAGLVAATMGTPADVVKTRI----MNQPTDINGRGLLYKSSLDCLLRTVENEG 523
L +G A +A + P D K R+ +Q Y+ L +L V EG
Sbjct: 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEG 62
Query: 524 FLALYKGFLPVWIRMAPWSLT-FWLSFEQIRHSL 556
+LY G + R ++ L ++ ++
Sbjct: 63 PRSLYNGLVAGLQRQMSFASVRIGL-YDSVKQFY 95
Score = 58.5 bits (142), Expect = 1e-09
Identities = 21/101 (20%), Positives = 40/101 (39%), Gaps = 11/101 (10%)
Query: 19 DSVWCTYIVSVAAACVAEVITYPLDLTKTRLQIQGEAASQATNGDKKLPHRGMVKTGLGI 78
D + C + + A VI P+D+ KTR + L +
Sbjct: 200 DDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNS-----------ALGQYHSAGHCALTM 248
Query: 79 IREEGVSKLWRGVTPALYRHVVYSGCRIVTYEKIRASMSKN 119
+R+EG ++G P+ R ++ VTYE+++ ++
Sbjct: 249 LRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAA 289
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial
transporter, nucleotide translocation, membrane protein,
transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP:
f.42.1.1 PDB: 2c3e_A*
Length = 297
Score = 183 bits (467), Expect = 9e-54
Identities = 55/284 (19%), Positives = 113/284 (39%), Gaps = 14/284 (4%)
Query: 277 ITYPLDLTKTRLQIQGEAASQATNGDKKLPHRGMVKTGLGIIREEGVSKLWRGVTPALYR 336
P++ K LQ+Q + + + ++G++ + I +E+G WRG + R
Sbjct: 24 AVAPIERVKLLLQVQHASKQISA----EKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIR 79
Query: 337 HVVYSGCRIVTYEKIRASMSKNRDGTFPVWKSA----ISGVSSGALAQFLSSPADLVKVQ 392
+ +K + D W+ SG ++GA + P D + +
Sbjct: 80 YFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTR 139
Query: 393 IQMEGKRQLQGKAPRVHSPWHAFQKILSEGGIRGLWKGSIPNVQRAALVNLGDLTTYDTA 452
+ + + + KI G+RGL++G +VQ + YDTA
Sbjct: 140 LAADVGKG--AAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTA 197
Query: 453 KHLIISHTSLSDSHLTHVLSSGMAGLVAATMGTPADVVKTRIMNQPTDINGRGLLYKSSL 512
K ++ ++ + + + VA + P D V+ R+M Q G ++Y ++
Sbjct: 198 KGMLPDPKNVH--IIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSG-RKGADIMYTGTV 254
Query: 513 DCLLRTVENEGFLALYKGFLPVWIRMAPWSLTFWLSFEQIRHSL 556
DC + ++EG A +KG +R + + +++I+ +
Sbjct: 255 DCWRKIAKDEGPKAFFKGAWSNVLRGMGGAFVL-VLYDEIKKFV 297
Score = 165 bits (421), Expect = 3e-47
Identities = 64/343 (18%), Positives = 121/343 (35%), Gaps = 54/343 (15%)
Query: 121 DGTFPVWKSAISGVSSGALAQFLSSPADLVKVQIQMEGKRQLQGKAPRVHSPWHAFQKIL 180
D K ++G + A+++ +P + VK+ +Q++ + + +I
Sbjct: 2 DQALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIP 61
Query: 181 SEGGIRGLWKGSIPNVQR----AALVNLGDLTTYDTAKHLIISHTSLSDSHLTHVLSSNT 236
E G W+G++ NV R AL + D K + + + +
Sbjct: 62 KEQGFLSFWRGNLANVIRYFPTQAL----NFAFKDKYKQIFLGGVDRHKQFWRYFAGN-- 115
Query: 237 GLNFEKLPLIHSPAIAQHYRNKPSLKRSKSGWKFLLLIPQITYPLDLTKTRLQIQGEAAS 296
+ S A G L YPLD +TRL
Sbjct: 116 ---------LASGGAA--------------GATSLC----FVYPLDFARTRLAA------ 142
Query: 297 QATNGDKKLPHRGMVKTGLGIIREEGVSKLWRGVTPALYRHVVYSGCRIVTYEKIRASMS 356
G + G+ I + +G+ L++G ++ ++Y Y+ + +
Sbjct: 143 DVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLP 202
Query: 357 KNRDGTFPVWKSAISGVSSGALAQFLSSPADLVKVQIQMEGKRQLQGKAPRVHSPWHAFQ 416
++ V S + + A+A +S P D V+ ++ M+ R +G ++
Sbjct: 203 DPKNVHIIV--SWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGR--KGADIMYTGTVDCWR 258
Query: 417 KILSEGGIRGLWKGSIPNVQR---AALVNLGDLTTYDTAKHLI 456
KI + G + +KG+ NV R A V L YD K +
Sbjct: 259 KIAKDEGPKAFFKGAWSNVLRGMGGAFV----LVLYDEIKKFV 297
Score = 149 bits (378), Expect = 5e-41
Identities = 56/326 (17%), Positives = 115/326 (35%), Gaps = 52/326 (15%)
Query: 31 AACVAEVITYPLDLTKTRLQIQGEAASQATNGDKKLPHRGMVKTGLGIIREEGVSKLWRG 90
AA +++ P++ K LQ+Q + + + ++G++ + I +E+G WRG
Sbjct: 17 AAAISKTAVAPIERVKLLLQVQHASKQISA----EKQYKGIIDCVVRIPKEQGFLSFWRG 72
Query: 91 VTPALYRHVVYSGCRIVTYEKIRASMSKNRDGTFPVWKSA----ISGVSSGALAQFLSSP 146
+ R+ +K + D W+ SG ++GA + P
Sbjct: 73 NLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYP 132
Query: 147 ADLVKVQIQMEGKRQLQGKAPRVHSPWHAFQKILSEGGIRGLWKGSIPNVQRAALVNLGD 206
D + ++ + + + KI G+RGL++G +VQ +
Sbjct: 133 LDFARTRLAADVGK--GAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAY 190
Query: 207 LTTYDTAKHLIISHTSLSDSHLTHVLSSNTGLNFEKLPLIHSPAIAQHYRNKPSLKRSKS 266
YDTAK ++ ++ + + + T A+A
Sbjct: 191 FGVYDTAKGMLPDPKNV--HIIVSWMIAQT-----------VTAVAG------------- 224
Query: 267 GWKFLLLIPQITYPLDLTKTRLQIQGEAASQATNGDKKLPHRGMVKTGLGIIREEGVSKL 326
++YP D + R+ +Q + G V I ++EG
Sbjct: 225 ---------LVSYPFDTVRRRMMMQSGRKGADI------MYTGTVDCWRKIAKDEGPKAF 269
Query: 327 WRGVTPALYRHVVYSGCRIVTYEKIR 352
++G + R + +V Y++I+
Sbjct: 270 FKGAWSNVLR-GMGGAFVLVLYDEIK 294
Score = 131 bits (333), Expect = 7e-35
Identities = 42/191 (21%), Positives = 76/191 (39%), Gaps = 17/191 (8%)
Query: 30 AAACVAEVITYPLDLTKTRLQIQGEAASQATNGDKKLPHRGMVKTGLGIIREEGVSKLWR 89
AA + YPLD +TRL G + G+ I + +G+ L++
Sbjct: 121 AAGATSLCFVYPLDFARTRLAAD------VGKGAAQREFTGLGNCITKIFKSDGLRGLYQ 174
Query: 90 GVTPALYRHVVYSGCRIVTYEKIRASMSKNRDGTFPVWKSAISGVSSGALAQFLSSPADL 149
G ++ ++Y Y+ + + ++ V S + + A+A +S P D
Sbjct: 175 GFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHIIV--SWMIAQTVTAVAGLVSYPFDT 232
Query: 150 VKVQIQMEGKRQLQGKAPRVHSPWHAFQKILSEGGIRGLWKGSIPNVQR---AALVNLGD 206
V+ ++ M+ R +G ++KI + G + +KG+ NV R A V
Sbjct: 233 VRRRMMMQSGR--KGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGGAFV---- 286
Query: 207 LTTYDTAKHLI 217
L YD K +
Sbjct: 287 LVLYDEIKKFV 297
Score = 119 bits (300), Expect = 3e-30
Identities = 36/205 (17%), Positives = 78/205 (38%), Gaps = 13/205 (6%)
Query: 360 DGTFPVWKSAISGVSSGALAQFLSSPADLVKVQIQMEGKRQLQGKAPRVHSPWHAFQKIL 419
D K ++G + A+++ +P + VK+ +Q++ + + +I
Sbjct: 2 DQALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIP 61
Query: 420 SEGGIRGLWKGSIPNVQR----AALVNLGDLTTYDTAKHLIIS----HTSLSDSHLTHVL 471
E G W+G++ NV R AL + D K + + H ++
Sbjct: 62 KEQGFLSFWRGNLANVIRYFPTQAL----NFAFKDKYKQIFLGGVDRHKQFWRYFAGNLA 117
Query: 472 SSGMAGLVAATMGTPADVVKTRIMNQPTDINGRGLLYKSSLDCLLRTVENEGFLALYKGF 531
S G AG + P D +TR+ + + +C+ + +++G LY+GF
Sbjct: 118 SGGAAGATSLCFVYPLDFARTRLAADVGKGAAQR-EFTGLGNCITKIFKSDGLRGLYQGF 176
Query: 532 LPVWIRMAPWSLTFWLSFEQIRHSL 556
+ + ++ ++ + L
Sbjct: 177 NVSVQGIIIYRAAYFGVYDTAKGML 201
Score = 63.4 bits (155), Expect = 4e-11
Identities = 17/94 (18%), Positives = 40/94 (42%), Gaps = 7/94 (7%)
Query: 20 SVWCTYIVSVAAACVAEVITYPLDLTKTRLQIQGEAASQATNGDKKLPHRGMVKTGLGII 79
+ +++++ VA +++YP D + R+ +Q + G V I
Sbjct: 208 HIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADI------MYTGTVDCWRKIA 261
Query: 80 REEGVSKLWRGVTPALYRHVVYSGCRIVTYEKIR 113
++EG ++G + R + +V Y++I+
Sbjct: 262 KDEGPKAFFKGAWSNVLR-GMGGAFVLVLYDEIK 294
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.6 bits (138), Expect = 9e-09
Identities = 84/589 (14%), Positives = 162/589 (27%), Gaps = 192/589 (32%)
Query: 34 VAEVITYPLDLTKTR-----LQIQGEAASQATNGD----------KKLPHRGMVKTGLGI 78
+ +I ++ T L + E Q + + + +
Sbjct: 51 IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR 110
Query: 79 IREEGVSKLWRGVTPALYRHVVYSGCRIVTYEKIRASMSKNRDGTFPVWKSAISGVS-SG 137
+ E +L+ +V R+ Y K+R ++ + R + I GV SG
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNV----SRLQPYLKLRQALLELRPAKNVL----IDGVLGSG 162
Query: 138 --ALAQFLSSPADLVKVQIQMEGK----------------RQLQGKAPRVHSPWHAFQKI 179
+A L KVQ +M+ K LQ ++ W +
Sbjct: 163 KTWVA--LDVCLSY-KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 180 LS---------EGGIRGLWKGS--------IPNVQRAALVNLGD------LTTYD----- 211
S + +R L K + NVQ A N + LTT
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD 279
Query: 212 -----TAKHLIISHTS--LSDSHLTHVLSSNTGLNFEKLP---LIHSP----AIAQHYRN 257
T H+ + H S L+ + +L + LP L +P IA+ R+
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD 339
Query: 258 KPSLKRSKSGWKFLLLIPQITYPLDLTKTRLQIQGEAASQATNGDKKLPHRGMVKTGLGI 317
+ W + LT I+ +K+ R L +
Sbjct: 340 GLAT------WDNWK---HVNCD-KLTTI---IESSLNVLEPAEYRKMFDR------LSV 380
Query: 318 IRE-----EGV-SKLWRGVTPALYRHVVYSGCRIVTYEKIRASMSKNRDGTFPVWKSAIS 371
+ S +W V S +V + + S+ + K +
Sbjct: 381 FPPSAHIPTILLSLIWFDVI--------KSDVMVVVNKLHKYSLV-EKQ-----PKESTI 426
Query: 372 GVSSGALAQFLSSPADLVKVQIQMEGKRQL------QGKAPRVHSPW------------- 412
+ S L ++++++E + L P+
Sbjct: 427 SIPSIYL-----------ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS 475
Query: 413 ----HA-----------FQKILS-----EGGIRGLWKGSIPNVQRAALVN-LGDLTTYDT 451
H F+ + E IR S +++N L L Y
Sbjct: 476 HIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR---HDSTAWNASGSILNTLQQLKFYK- 531
Query: 452 AKHLIISHTS----LSD------SHLTHVLSSGMAGLVAATMGTPADVV 490
++ + ++ +++ S L+ + + +
Sbjct: 532 -PYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAI 579
Score = 29.4 bits (65), Expect = 4.4
Identities = 24/163 (14%), Positives = 55/163 (33%), Gaps = 31/163 (19%)
Query: 413 HAFQKILS---EGGIRGLWKGSIPNVQRAALVNLGDLTTYDTAKHLIISHTSLSDSH-LT 468
+ ++ ILS + + + ++ ++ L + + H+I+S ++S + L
Sbjct: 16 YQYKDILSVFEDAFVDNFDCKDVQDMPKSIL-------SKEEIDHIIMSKDAVSGTLRLF 68
Query: 469 HVLSSGMAGLVAATMGTPADV----VKTRIMNQPTDINGRGLLYKSSLDCLLRTVENEGF 524
L S +V + + + + I + + +Y D L +
Sbjct: 69 WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ---- 124
Query: 525 LALYKGFLPVWIRMAP-WSLTFWLSFEQIRHSL-----GATGF 561
K + R+ P L L ++R + G G
Sbjct: 125 -VFAKYNVS---RLQPYLKLRQAL--LELRPAKNVLIDGVLGS 161
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.8 bits (134), Expect = 3e-08
Identities = 67/426 (15%), Positives = 112/426 (26%), Gaps = 174/426 (40%)
Query: 204 LGDLTTYDTAKHLIISHTSLSDSHLTHVLSSNT--------GLNFEK------------- 242
L DL Y T L+ S L+ ++ + GLN +
Sbjct: 173 LRDL--YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY 230
Query: 243 -------LPLIHSPAIAQ--HYRN-------KPS-LKRSKSG------------------ 267
PLI + Q HY P L+ G
Sbjct: 231 LLSIPISCPLI---GVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETD 287
Query: 268 -W-----------KFLLLI---PQITYPLDLTKTRLQIQGEAASQATNGDKKLPHRGMVK 312
W L I YP + + ++ +P M
Sbjct: 288 SWESFFVSVRKAITVLFFIGVRCYEAYP------NTSLPPSILEDSLENNEGVPSP-M-- 338
Query: 313 TGLGIIREEGVSKLWRGVTPA-LYRHVVYSGCRIVTYEKIRASMSKNRDGTFPVWKSAIS 371
L I +T + +V + + +++ S+ N V +S
Sbjct: 339 --LSI----------SNLTQEQVQDYVNKTNSHLPAGKQVEISL-VNGAKNL-V----VS 380
Query: 372 GVSSGALAQFLSSPADLVKVQIQMEGKR----QLQGKAP---R----------VHSPWH- 413
G P L + + + + Q + P R V SP+H
Sbjct: 381 G-----------PPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHS 429
Query: 414 -----AFQKILSEGGIRGL-WKGS---IPNVQRAALV-------NLGDLTTYDTAKH--L 455
A I + + + IP V +L L+ + +
Sbjct: 430 HLLVPASDLINKDLVKNNVSFNAKDIQIP-------VYDTFDGSDLRVLSGSISERIVDC 482
Query: 456 IISH----TSLSDSHLTHVL------SSGMAGLVAATM-GTPADVVKTRIMN-QPTDING 503
II + + TH+L +SG+ L GT V+ ++ P D G
Sbjct: 483 IIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYG 542
Query: 504 RGLLYK 509
+K
Sbjct: 543 ----FK 544
Score = 50.0 bits (119), Expect = 2e-06
Identities = 55/375 (14%), Positives = 97/375 (25%), Gaps = 157/375 (41%)
Query: 29 VAAACVAEVITYP--LDLTKTRLQI---QGEAASQATNGDKKLPHRGMVKTGLGIIREEG 83
V A +AE ++ + + + G +A P+ + + L E
Sbjct: 278 VTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAY------PNTSLPPSILEDSLENN 331
Query: 84 VSKLWRGV-TPALYRHVVYSGCRIVTYEKIRASMSKNRDGTFPVWKSAISG----VSSGA 138
GV +P L + S + + + V S ++G V SG
Sbjct: 332 -----EGVPSPML---SI-SNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSG- 381
Query: 139 LAQFLSSPADLVKVQIQMEGKR----QLQGKAP---R----------VHSPWH------A 175
P L + + + + Q + P R V SP+H A
Sbjct: 382 ------PPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPA 435
Query: 176 FQKILSEGGIRGL-WKGS---IPNVQRAALVNLGDLTTYDTAKHLIISHTSLSDSHLTHV 231
I + + + IP V YDT
Sbjct: 436 SDLINKDLVKNNVSFNAKDIQIP-V-------------YDT------------------- 462
Query: 232 LSSNTGLNFEKLPLIHSPAIAQHYRNKPSLKRSKSGWKFLLLIPQIT-YPLDLTKTRLQI 290
G + L S+ ++ I P+ T
Sbjct: 463 ---FDGSDLRVL--------------SGSISER--------IVDCIIRLPVKWETT---- 493
Query: 291 QGEAASQATNGDKKLPH-----RGMVKTGLGIIREEGVSKLWRGVTPALYRHVVYSGCRI 345
+AT H G +GLG++ + G +G R+
Sbjct: 494 ---TQFKAT-------HILDFGPGGA-SGLGVL----THRNKDG-----------TGVRV 527
Query: 346 VTYEKIRASMSKNRD 360
+ + ++ N D
Sbjct: 528 I----VAGTLDINPD 538
Score = 44.7 bits (105), Expect = 9e-05
Identities = 78/463 (16%), Positives = 139/463 (30%), Gaps = 157/463 (33%)
Query: 212 TAKHLIISHTSLSDS----HLTHVLSSNTGLNFEK-LPLIHSPAIAQHYRNKPSLKRSKS 266
+ + L +SH SL + ++S F K LP + A ++P+ + +
Sbjct: 5 STRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILP-EPTEGFAAD--DEPT---TPA 58
Query: 267 G--WKFLLLIPQITYP------LDLTKTRLQ------IQGE-----AASQATNGDKKLPH 307
KFL + + P + L ++G AA D L
Sbjct: 59 ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVK 118
Query: 308 RGMVKTGLGIIR------EEGVSKLWRGVTPALYRHV------VYS-----GCRIVTYEK 350
+I+ + AL+R V + + G +E+
Sbjct: 119 TK------ELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEE 172
Query: 351 IRASMSKNRDGTFPVWKSAISGVSSGALAQFLSSPADLVKVQIQ-MEGKRQLQGKAPR-- 407
+R + + T+ V + S+ L++ + + D KV Q + L+ +
Sbjct: 173 LR-DLYQ----TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPD 227
Query: 408 ----VHSP-------------WHAFQKIL--SEGGIRGLWKGSIPNVQR---AALVNLGD 445
+ P + K+L + G +R KG+ + Q A + D
Sbjct: 228 KDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETD 287
Query: 446 LTT----YDTAK-------------HLIISHTSLSDSHLTHVLSSGMAGLVAATM----G 484
+ + + + + +TSL S L L + V + M
Sbjct: 288 --SWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEG--VPSPMLSISN 343
Query: 485 TPADVVKTRI--MNQ--PTD-------INGR------GL---LYKSSLDCLLRTVENEG- 523
+ V+ + N P +NG G LY L+ LR +
Sbjct: 344 LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLY--GLNLTLRKAKAPSG 401
Query: 524 -------F----LALYKGFLPVWIRMAPWSLTFWLSFEQIRHS 555
F L FLPV +P F HS
Sbjct: 402 LDQSRIPFSERKLKFSNRFLPV---ASP----F--------HS 429
Score = 37.7 bits (87), Expect = 0.011
Identities = 25/143 (17%), Positives = 50/143 (34%), Gaps = 48/143 (33%)
Query: 30 AAACVAEVITYP--LDLTKTRLQIQGEAASQATNGDKKLP-HRGMVKTGLGIIR----EE 82
A A +A+V++ +++ R G A D+ + GM+ G + +E
Sbjct: 1769 ALASLADVMSIESLVEVVFYR----GMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQE 1824
Query: 83 GVSKLWRGVTPALYRHVVYSG--CRIVTYEKIRASMSKNRDGTFPVWKSAISG---VSSG 137
+ + V +G IV Y N + V++G
Sbjct: 1825 ALQYVVERVGKR-------TGWLVEIVNY---------N-----------VENQQYVAAG 1857
Query: 138 ---ALAQFLSSPADLVKVQ-IQM 156
AL +++ + +K+Q I +
Sbjct: 1858 DLRALDT-VTNVLNFIKLQKIDI 1879
Score = 28.5 bits (63), Expect = 7.5
Identities = 32/176 (18%), Positives = 55/176 (31%), Gaps = 83/176 (47%)
Query: 430 GSIPNVQRAALVNLG-DL-TTYDTAKHLIISHTSLSDSHLTHVLSSGMAGLVAATMGTPA 487
GS Q +G DL T A+ + + +D+H G +
Sbjct: 1625 GS----QE---QGMGMDLYKTSKAAQDV----WNRADNHFKDTY-----GF------SIL 1662
Query: 488 DVVKTRIMNQPTDI-------NGR-------GLLYKSSLDCLLRTVE-----NEGFLALY 528
D+V N P ++ G+ +++++ +D L+T + NE +
Sbjct: 1663 DIVI----NNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYT 1718
Query: 529 ----KGFLPVWIRMAPWSLT-------FWLS---FEQIR-------------HSLG 557
KG L S T + FE ++ HSLG
Sbjct: 1719 FRSEKGLL---------SATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLG 1765
>2hmh_A Suppressor of cytokine signaling 3; SOCS3, GP130, PTyr, peptide
complex, cytokine regulator; HET: PTR; 2.00A {Mus
musculus}
Length = 152
Score = 29.2 bits (65), Expect = 2.1
Identities = 15/77 (19%), Positives = 26/77 (33%), Gaps = 5/77 (6%)
Query: 209 TYDTAKHLIISHTSLSDSHLTHVLSSNTGLNFEKLPLIHSPAIAQHYRNKPSLKRSKSGW 268
T K+L I S S + S+ F+ + + HY +L S
Sbjct: 76 TQSGTKNLRIQXEGGSFSLQSDPRSTQPVPRFDXVL-----KLVHHYMPPQALPGSTPKR 130
Query: 269 KFLLLIPQITYPLDLTK 285
+ + PL L++
Sbjct: 131 AYYIYSGGEKIPLVLSR 147
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 3.1
Identities = 7/30 (23%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 128 KSAISGVSSGALAQFL--SSPADLVKVQIQ 155
K A+ + + +L + S+PA +K ++
Sbjct: 19 KQALKKLQA-SLKLYADDSAPALAIKATME 47
Score = 28.8 bits (63), Expect = 3.1
Identities = 7/30 (23%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 367 KSAISGVSSGALAQFL--SSPADLVKVQIQ 394
K A+ + + +L + S+PA +K ++
Sbjct: 19 KQALKKLQA-SLKLYADDSAPALAIKATME 47
>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A
{Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6
Length = 281
Score = 27.9 bits (63), Expect = 8.4
Identities = 19/104 (18%), Positives = 33/104 (31%), Gaps = 26/104 (25%)
Query: 450 DTAKH-LIISHTSLSDSHLTHVLSSGMAGLVAATMGTPADVVK---------TRI-MNQP 498
H + S HL H ++ + + D+ K TRI + P
Sbjct: 172 SPELHDYVFGVVS----HLPHAVAFALVDTLIHMSTPEVDLFKYPGGGFKDFTRIAKSDP 227
Query: 499 ---TDI---NGRGLL-----YKSSLDCLLRTVENEGFLALYKGF 531
DI N ++ ++ SL+ L + E L +
Sbjct: 228 IMWRDIFLENKENVMKAIEGFEKSLNHLKELIVREAEEELVEYL 271
>1zk8_A Transcriptional regulator, TETR family; TETR
member,transcriptional regulator, STRU genomics, PSI,
protein structure initiative; 2.15A {Bacillus cereus
atcc 14579} SCOP: a.4.1.9 a.121.1.1
Length = 183
Score = 27.3 bits (61), Expect = 9.3
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 8/37 (21%)
Query: 71 MVKTGLGIIREEGVSKL-WR------GVTP-ALYRHV 99
+V+T I GV ++ GV +LY HV
Sbjct: 13 IVETAAEIADANGVQEVTLASLAQTLGVRSPSLYNHV 49
Score = 27.3 bits (61), Expect = 9.3
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 8/37 (21%)
Query: 310 MVKTGLGIIREEGVSKL-WR------GVTP-ALYRHV 338
+V+T I GV ++ GV +LY HV
Sbjct: 13 IVETAAEIADANGVQEVTLASLAQTLGVRSPSLYNHV 49
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta,
oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus}
PDB: 3ggg_D* 3ggp_A*
Length = 314
Score = 28.0 bits (63), Expect = 9.5
Identities = 19/104 (18%), Positives = 33/104 (31%), Gaps = 26/104 (25%)
Query: 450 DTAKH-LIISHTSLSDSHLTHVLSSGMAGLVAATMGTPADVVK---------TRI-MNQP 498
H + S HL H ++ + + D+ K TRI + P
Sbjct: 204 SPELHDYVFGVVS----HLPHAVAFALVDTLIHMSTPEVDLFKYPGGGFKDFTRIAKSDP 259
Query: 499 ---TDI---NGRGLL-----YKSSLDCLLRTVENEGFLALYKGF 531
DI N ++ ++ SL+ L + E L +
Sbjct: 260 IMWRDIFLENKENVMKAIEGFEKSLNHLKELIVREAEEELVEYL 303
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.133 0.401
Gapped
Lambda K H
0.267 0.0503 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,328,216
Number of extensions: 496389
Number of successful extensions: 924
Number of sequences better than 10.0: 1
Number of HSP's gapped: 875
Number of HSP's successfully gapped: 48
Length of query: 561
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 463
Effective length of database: 3,965,535
Effective search space: 1836042705
Effective search space used: 1836042705
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.4 bits)