RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3227
(561 letters)
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus),
heart isoform t1 [TaxId: 9913]}
Length = 292
Score = 119 bits (297), Expect = 1e-30
Identities = 56/280 (20%), Positives = 112/280 (40%), Gaps = 14/280 (5%)
Query: 277 ITYPLDLTKTRLQIQGEAASQATNGDKKLPHRGMVKTGLGIIREEGVSKLWRGVTPALYR 336
P++ K LQ+Q + + ++G++ + I +E+G WRG + R
Sbjct: 23 AVAPIERVKLLLQVQHASKQISAEK----QYKGIIDCVVRIPKEQGFLSFWRGNLANVIR 78
Query: 337 HVVYSGCRIVTYEKIRASMSKNRDGTFPVWK----SAISGVSSGALAQFLSSPADLVKVQ 392
+ +K + D W+ + SG ++GA + P D + +
Sbjct: 79 YFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTR 138
Query: 393 IQMEGKRQLQGKAPRVHSPWHAFQKILSEGGIRGLWKGSIPNVQRAALVNLGDLTTYDTA 452
+ + + + + KI G+RGL++G +VQ + YDTA
Sbjct: 139 LAADVGKGAAQR--EFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTA 196
Query: 453 KHLIISHTSLSDSHLTHVLSSGMAGLVAATMGTPADVVKTRIMNQPTDINGRGLLYKSSL 512
K ++ ++ + + + VA + P D V+ R+M Q G ++Y ++
Sbjct: 197 KGMLPDPKNVHI--IVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQS-GRKGADIMYTGTV 253
Query: 513 DCLLRTVENEGFLALYKGFLPVWIRMAPWSLTFWLSFEQI 552
DC + ++EG A +KG +R + L +++I
Sbjct: 254 DCWRKIAKDEGPKAFFKGAWSNVLRGMGGAFVLVL-YDEI 292
Score = 96.7 bits (239), Expect = 7e-23
Identities = 54/325 (16%), Positives = 111/325 (34%), Gaps = 52/325 (16%)
Query: 31 AACVAEVITYPLDLTKTRLQIQGEAASQATNGDKKLPHRGMVKTGLGIIREEGVSKLWRG 90
AA +++ P++ K LQ+Q + + ++G++ + I +E+G WRG
Sbjct: 16 AAAISKTAVAPIERVKLLLQVQHASKQISAEK----QYKGIIDCVVRIPKEQGFLSFWRG 71
Query: 91 VTPALYRHVVYSGCRIVTYEKIRASMSKNRDGTFPVWK----SAISGVSSGALAQFLSSP 146
+ R+ +K + D W+ + SG ++GA + P
Sbjct: 72 NLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYP 131
Query: 147 ADLVKVQIQMEGKRQLQGKAPRVHSPWHAFQKILSEGGIRGLWKGSIPNVQRAALVNLGD 206
D + ++ + + + + KI G+RGL++G +VQ +
Sbjct: 132 LDFARTRLAADVGKGAAQR--EFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAY 189
Query: 207 LTTYDTAKHLIISHTSLSDSHLTHVLSSNTGLNFEKLPLIHSPAIAQHYRNKPSLKRSKS 266
YDTAK ++ +N +
Sbjct: 190 FGVYDTAKGML-----------------------------------PDPKNVHIIVSWMI 214
Query: 267 GWKFLLLIPQITYPLDLTKTRLQIQGEAASQATNGDKKLPHRGMVKTGLGIIREEGVSKL 326
+ ++YP D + R+ +Q + + G V I ++EG
Sbjct: 215 AQTVTAVAGLVSYPFDTVRRRMMMQS------GRKGADIMYTGTVDCWRKIAKDEGPKAF 268
Query: 327 WRGVTPALYRHVVYSGCRIVTYEKI 351
++G + R + +V Y++I
Sbjct: 269 FKGAWSNVLR-GMGGAFVLVLYDEI 292
Score = 84.8 bits (208), Expect = 7e-19
Identities = 56/331 (16%), Positives = 116/331 (35%), Gaps = 40/331 (12%)
Query: 121 DGTFPVWKSAISGVSSGALAQFLSSPADLVKVQIQMEGKRQLQGKAPRVHSPWHAFQKIL 180
D K ++G + A+++ +P + VK+ +Q++ + + +I
Sbjct: 1 DQALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIP 60
Query: 181 SEGGIRGLWKGSIPNVQRAALVNLGDLTTYDTAKHLIISHTSLSDSHLTHVLSSNTGLNF 240
E G W+G++ NV R + D K + + + +
Sbjct: 61 KEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLAS--- 117
Query: 241 EKLPLIHSPAIAQHYRNKPSLKRSKSGWKFLLLIPQITYPLDLTKTRLQIQGEAASQATN 300
+ A + + YPLD +TRL +
Sbjct: 118 ----GGAAGATSLCF----------------------VYPLDFARTRLA------ADVGK 145
Query: 301 GDKKLPHRGMVKTGLGIIREEGVSKLWRGVTPALYRHVVYSGCRIVTYEKIRASMSKNRD 360
G + G+ I + +G+ L++G ++ ++Y Y+ + + ++
Sbjct: 146 GAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKN 205
Query: 361 GTFPVWKSAISGVSSGALAQFLSSPADLVKVQIQMEGKRQLQGKAPRVHSPWHAFQKILS 420
V S + + A+A +S P D V+ ++ M+ R +G ++KI
Sbjct: 206 VHIIV--SWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGR--KGADIMYTGTVDCWRKIAK 261
Query: 421 EGGIRGLWKGSIPNVQRAALVNLGDLTTYDT 451
+ G + +KG+ NV R + L YD
Sbjct: 262 DEGPKAFFKGAWSNVLR-GMGGAFVLVLYDE 291
Score = 75.5 bits (184), Expect = 1e-15
Identities = 32/199 (16%), Positives = 74/199 (37%), Gaps = 5/199 (2%)
Query: 360 DGTFPVWKSAISGVSSGALAQFLSSPADLVKVQIQMEGKRQLQGKAPRVHSPWHAFQKIL 419
D K ++G + A+++ +P + VK+ +Q++ + + +I
Sbjct: 1 DQALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIP 60
Query: 420 SEGGIRGLWKGSIPNVQRAALVNLGDLTTYDTAKHLIISHTSLSDSH----LTHVLSSGM 475
E G W+G++ NV R + D K + + ++ S G
Sbjct: 61 KEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGA 120
Query: 476 AGLVAATMGTPADVVKTRIMNQPTDINGRGLLYKSSLDCLLRTVENEGFLALYKGFLPVW 535
AG + P D +TR+ + + +C+ + +++G LY+GF
Sbjct: 121 AGATSLCFVYPLDFARTRLAADVGKGAAQR-EFTGLGNCITKIFKSDGLRGLYQGFNVSV 179
Query: 536 IRMAPWSLTFWLSFEQIRH 554
+ + ++ ++ +
Sbjct: 180 QGIIIYRAAYFGVYDTAKG 198
Score = 60.9 bits (146), Expect = 8e-11
Identities = 39/192 (20%), Positives = 74/192 (38%), Gaps = 11/192 (5%)
Query: 21 VWCTYIVSVAAACVAEVITYPLDLTKTRLQIQGEAASQATNGDKKLPHRGMVKTGLGIIR 80
AA + YPLD +TRL + G + G+ I +
Sbjct: 111 FAGNLASGGAAGATSLCFVYPLDFARTRLA------ADVGKGAAQREFTGLGNCITKIFK 164
Query: 81 EEGVSKLWRGVTPALYRHVVYSGCRIVTYEKIRASMSKNRDGTFPVWKSAISGVSSGALA 140
+G+ L++G ++ ++Y Y+ + + ++ V S + + A+A
Sbjct: 165 SDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHIIV--SWMIAQTVTAVA 222
Query: 141 QFLSSPADLVKVQIQMEGKRQLQGKAPRVHSPWHAFQKILSEGGIRGLWKGSIPNVQRAA 200
+S P D V+ ++ M+ R+ G ++KI + G + +KG+ NV R
Sbjct: 223 GLVSYPFDTVRRRMMMQSGRK--GADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLR-G 279
Query: 201 LVNLGDLTTYDT 212
+ L YD
Sbjct: 280 MGGAFVLVLYDE 291
Score = 51.3 bits (121), Expect = 1e-07
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
Query: 465 SHLTHVLSSGMAGLVAATMGTPADVVKTRIMNQPTDINGRG-LLYKSSLDCLLRTVENEG 523
S L L+ G+A ++ T P + VK + Q YK +DC++R + +G
Sbjct: 5 SFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQG 64
Query: 524 FLALYKGFLPVWIRMAPWSLTFWLSFEQIRHSL 556
FL+ ++G L IR P + ++ +
Sbjct: 65 FLSFWRGNLANVIRYFPTQALNFAFKDKYKQIF 97
>d4pgaa_ c.88.1.1 (A:) Glutaminase-asparaginase {Pseudomonas sp., 7A
[TaxId: 306]}
Length = 330
Score = 29.0 bits (64), Expect = 1.4
Identities = 21/152 (13%), Positives = 49/152 (32%), Gaps = 11/152 (7%)
Query: 340 YSGCRIVTYEKIRASMSKNRDGTFPVWKSAISGVSSGALAQFLSSPADLVKVQIQMEGKR 399
Y + +K + R GT ++ ++ A+A + + V + M +
Sbjct: 101 YFLNLVQKTDKPIVVVGSMRPGTAMSADGMLNLYNAVAVAS--NKDSRGKGVLVTMNDEI 158
Query: 400 QLQGKAPRVHSPWHAFQKILSEGGIRGLWKGSIPNVQRAALVNLGDLTTYDTAK------ 453
Q + + + S G G+ R + +D +
Sbjct: 159 QSGRDVSKSIN--IKTEAFKSAWGPLGMVVEGKSYWFRLPAKRHTVNSEFDIKQISSLPQ 216
Query: 454 -HLIISHTSLSDSHLTHVLSSGMAGLVAATMG 484
+ S+ +++D+ + +G L+ A G
Sbjct: 217 VDIAYSYGNVTDTAYKALAQNGAKALIHAGTG 248
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 460
Score = 27.2 bits (58), Expect = 5.6
Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 5/54 (9%)
Query: 214 KHLIISHTSLSDSHLTHVLSSNTG-----LNFEKLPLIHSPAIAQHYRNKPSLK 262
+ L I LSD+ +L L+ L I+ R P+L
Sbjct: 5 QSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALA 58
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId:
9606]}
Length = 529
Score = 27.2 bits (58), Expect = 6.3
Identities = 15/62 (24%), Positives = 21/62 (33%), Gaps = 5/62 (8%)
Query: 416 QKILSEGGIRGLW---KGSIPNVQRAALVNLGDLTTYDTAKHLIISHTSLSDSHLTHVLS 472
I I I N+QR A L +L A I + + + LT +L
Sbjct: 454 IVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGAT--APLTELLH 511
Query: 473 SG 474
S
Sbjct: 512 SR 513
Score = 27.2 bits (58), Expect = 7.0
Identities = 15/62 (24%), Positives = 21/62 (33%), Gaps = 5/62 (8%)
Query: 177 QKILSEGGIRGLW---KGSIPNVQRAALVNLGDLTTYDTAKHLIISHTSLSDSHLTHVLS 233
I I I N+QR A L +L A I + + + LT +L
Sbjct: 454 IVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGAT--APLTELLH 511
Query: 234 SN 235
S
Sbjct: 512 SR 513
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.133 0.401
Gapped
Lambda K H
0.267 0.0504 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,978,796
Number of extensions: 87991
Number of successful extensions: 190
Number of sequences better than 10.0: 1
Number of HSP's gapped: 182
Number of HSP's successfully gapped: 10
Length of query: 561
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 471
Effective length of database: 1,171,896
Effective search space: 551963016
Effective search space used: 551963016
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.5 bits)