BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3228
(410 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1DK8|A Chain A, Crystal Structure Of The Rgs-Homologous Domain Of Axin
Length = 147
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 52/77 (67%), Gaps = 5/77 (6%)
Query: 40 STSP-PNYLEWAKSFNNLLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKK----QTNQ 94
S SP P YL+WA+S ++LL+D +G+ LFR +L E +DLL+FWFAC G +K +N+
Sbjct: 2 SASPTPPYLKWAESLHSLLDDQDGISLFRTFLKQEGCADLLDFWFACTGFRKLEPCDSNE 61
Query: 95 DQINLIVKCIYRRYFKD 111
++ + + IYR+Y D
Sbjct: 62 EKRLKLARAIYRKYILD 78
>pdb|1EMU|A Chain A, Structure Of The Axin Rgs-Homologous Domain In Complex
With A Samp Repeat From Apc
Length = 132
Score = 72.4 bits (176), Expect = 4e-13, Method: Composition-based stats.
Identities = 37/112 (33%), Positives = 65/112 (58%), Gaps = 5/112 (4%)
Query: 44 PNYLEWAKSFNNLLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKK----QTNQDQINL 99
P YL+WA+S ++LL+D +G+ LFR +L E +DLL+FWFAC G +K +N+++
Sbjct: 1 PPYLKWAESLHSLLDDQDGISLFRTFLKQEGCADLLDFWFACTGFRKLEPCDSNEEKRLK 60
Query: 100 IVKCIYRRYFKDSRLGLSEECLSSVLEDIRAASRTSPNLSSRMFAESQLEVE 151
+ + IYR+Y D+ +S + + I+ + MF ++Q E++
Sbjct: 61 LARAIYRKYILDNNGIVSRQTKPATKSFIKGCIMKQL-IDPAMFDQAQTEIQ 111
>pdb|2JM5|A Chain A, Solution Structure Of The Rgs Domain From Human Rgs18
pdb|2OWI|A Chain A, Solution Structure Of The Rgs Domain From Human Rgs18
Length = 151
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 41/70 (58%)
Query: 41 TSPPNYLEWAKSFNNLLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKKQTNQDQINLI 100
SP ++W +SF+ LL+ +GL F ++L +E + +EFW ACE KK QI+L
Sbjct: 3 VSPEEAVKWGESFDKLLSHRDGLEAFTRFLKTEFSEENIEFWIACEDFKKSKGPQQIHLK 62
Query: 101 VKCIYRRYFK 110
K IY ++ +
Sbjct: 63 AKAIYEKFIQ 72
>pdb|1ZV4|X Chain X, Structure Of The Regulator Of G-Protein Signaling 17
(Rgsz2)
Length = 158
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 57/104 (54%), Gaps = 4/104 (3%)
Query: 47 LEWAKSFNNLLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKKQTNQDQINLIVKCIYR 106
L W+++F+ ++ P G +LFR++L +E + L FW ACE LKK+ N+ I + IY
Sbjct: 31 LSWSQNFDKMMKAPAGRNLFREFLRTEYSEENLLFWLACEDLKKEQNKKVIEEKARMIYE 90
Query: 107 RYFKDSRLGLSEECLSSVLEDIRAASRTSPNLSSRMFAESQLEV 150
Y S L E L S + ++ + PN M+ ++QL++
Sbjct: 91 DYI--SILSPKEVSLDSRVREVINRNLLDPN--PHMYEDAQLQI 130
>pdb|2DLV|A Chain A, Solution Structure Of The Rgs Domain Of Human Regulator Of
G-Protein Signaling 18
Length = 140
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 40/68 (58%)
Query: 43 PPNYLEWAKSFNNLLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKKQTNQDQINLIVK 102
P ++W +SF+ LL+ +GL F ++L +E + +EFW ACE KK QI+L K
Sbjct: 9 PEEAVKWGESFDKLLSHRDGLEAFTRFLKTEFSEENIEFWIACEDFKKSKGPQQIHLKAK 68
Query: 103 CIYRRYFK 110
IY ++ +
Sbjct: 69 AIYEKFIQ 76
>pdb|2DLR|A Chain A, Solution Structure Of The Rgs Domain Of Human Regulator Of
G-Protein Signaling 10
Length = 149
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 34/60 (56%)
Query: 49 WAKSFNNLLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKKQTNQDQINLIVKCIYRRY 108
WA S NLL DPEG+ FR++L E + + FW ACE KK ++ Q+ K IY +
Sbjct: 15 WAASLENLLEDPEGVKRFREFLKKEFSEENVLFWLACEDFKKMQDKTQMQEKAKEIYMTF 74
>pdb|2IHB|B Chain B, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs10 And Activated Gi Alpha 3
Length = 153
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 34/58 (58%)
Query: 48 EWAKSFNNLLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKKQTNQDQINLIVKCIY 105
+WA S NLL DPEG+ FR++L E + + FW ACE KK ++ Q+ K IY
Sbjct: 30 KWAASLENLLEDPEGVKRFREFLKKEFSEENVLFWLACEDFKKMQDKTQMQEKAKEIY 87
>pdb|1CMZ|A Chain A, Solution Structure Of Gaip (Galpha Interacting Protein): A
Regulator Of G Protein Signaling
Length = 152
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 36/60 (60%)
Query: 49 WAKSFNNLLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKKQTNQDQINLIVKCIYRRY 108
WA+SF+ L++ P G +FR +L +E + + FW ACE LK + NQ ++ + IY Y
Sbjct: 20 WAQSFDKLMHSPAGRSVFRAFLRTEYSEENMLFWLACEELKAEANQHVVDEKARLIYEDY 79
>pdb|2I59|A Chain A, Solution Structure Of Rgs10
Length = 138
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 34/60 (56%)
Query: 49 WAKSFNNLLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKKQTNQDQINLIVKCIYRRY 108
WA S NLL DPEG+ FR++L E + + FW ACE KK ++ Q+ K IY +
Sbjct: 11 WAASLENLLEDPEGVKRFREFLKKEFSEENVLFWLACEDFKKMQDKTQMQEKAKEIYMTF 70
>pdb|2CRP|A Chain A, Solution Structure Of The Rgs Domain Of Regulator Of G-
Protein Signalling 5 (Rgs 5)
Length = 150
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 2/108 (1%)
Query: 41 TSPPNYLEWAKSFNNLLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKKQTNQDQINLI 100
TS L+W S + LL + GL F+ +L SE + LEFW ACE KK + ++
Sbjct: 17 TSLDEALQWRDSLDKLLQNNYGLASFKSFLKSEFSEENLEFWIACEDYKKIKSPAKMAEK 76
Query: 101 VKCIYRRYFKDSRLGLSEECLSSVLEDIRAASRTSPNLSSRMFAESQL 148
K IY + + E + +DI + P+LSS A+ ++
Sbjct: 77 AKQIYEEFIQTE--APKEVNIDHFTKDITMKNLVEPSLSSFDMAQKRI 122
>pdb|2OJ4|A Chain A, Crystal Structure Of Rgs3 Rgs Domain
Length = 127
Score = 48.5 bits (114), Expect = 8e-06, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 34/62 (54%)
Query: 47 LEWAKSFNNLLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKKQTNQDQINLIVKCIYR 106
L+W +S LL GL +F+ +L +E + LEFW ACE KK +Q ++ K I+
Sbjct: 5 LKWGESLEKLLVHKYGLAVFQAFLRTEFSEENLEFWLACEDFKKVKSQSKMASKAKKIFA 64
Query: 107 RY 108
Y
Sbjct: 65 EY 66
>pdb|2V4Z|B Chain B, The Crystal Structure Of The Human G-Protein Subunit Alpha
( Gnai3) In Complex With An Engineered Regulator Of G-
Protein Signaling Type 2 Domain (Rgs2)
Length = 142
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%)
Query: 42 SPPNYLEWAKSFNNLLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKKQTNQDQINLIV 101
SP W+++F+ LL GL FR +L SE + +EFW ACE KK + +++
Sbjct: 6 SPEEAQLWSEAFDELLASKYGLAAFRAFLKSEFSEENIEFWLACEDFKKTKSPQKLSSKA 65
Query: 102 KCIYRRY 108
+ IY +
Sbjct: 66 RKIYTDF 72
>pdb|4EKC|B Chain B, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKC|D Chain D, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKD|B Chain B, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
Length = 137
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%)
Query: 40 STSPPNYLEWAKSFNNLLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKKQTNQDQINL 99
S SP W+++F+ LL GL FR +L SE + +EFW ACE KK + +++
Sbjct: 5 SPSPEEAQLWSEAFDELLASKYGLAAFRAFLKSEFCEENIEFWLACEDFKKTKSPQKLSS 64
Query: 100 IVKCIYRRY 108
+ IY +
Sbjct: 65 KARKIYTDF 73
>pdb|2AF0|A Chain A, Structure Of The Regulator Of G-Protein Signaling Domain
Of Rgs2
Length = 146
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%)
Query: 42 SPPNYLEWAKSFNNLLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKKQTNQDQINLIV 101
SP W+++F+ LL GL FR +L SE + +EFW ACE KK + +++
Sbjct: 16 SPEEAQLWSEAFDELLASKYGLAAFRAFLKSEFCEENIEFWLACEDFKKTKSPQKLSSKA 75
Query: 102 KCIYRRY 108
+ IY +
Sbjct: 76 RKIYTDF 82
>pdb|1EZT|A Chain A, High-Resolution Solution Structure Of Free Rgs4 By Nmr
pdb|1EZY|A Chain A, High-Resolution Solution Structure Of Free Rgs4 By Nmr
Length = 166
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%)
Query: 40 STSPPNYLEWAKSFNNLLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKKQTNQDQINL 99
S S +WA+S NL+N GL F+ +L SE + ++FW +CE KK + +++
Sbjct: 4 SVSQEEVKKWAESLENLINHECGLAAFKAFLKSEYSEENIDFWISCEEYKKIKSPSKLSP 63
Query: 100 IVKCIYRRYF 109
K IY +
Sbjct: 64 KAKKIYNEFI 73
>pdb|2ODE|B Chain B, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2ODE|D Chain D, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
Length = 141
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 26/42 (61%)
Query: 49 WAKSFNNLLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKK 90
WA SF+ LL+ G+ FR +L +E + LEFW ACE KK
Sbjct: 14 WADSFDVLLSHKYGVAAFRAFLKTEFSEENLEFWLACEEFKK 55
>pdb|1AGR|E Chain E, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1AGR|H Chain H, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
Length = 205
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%)
Query: 48 EWAKSFNNLLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKKQTNQDQINLIVKCIYRR 107
+WA+S NL+N GL F+ +L SE + ++FW +CE KK + +++ K IY
Sbjct: 58 KWAESLENLINHECGLAAFKAFLKSEYSEENIDFWISCEEYKKIKSPSKLSPKAKKIYNE 117
Query: 108 YF 109
+
Sbjct: 118 FI 119
>pdb|2IHD|A Chain A, Crystal Structure Of Human Regulator Of G-Protein
Signaling 8, Rgs8
Length = 155
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 26/42 (61%)
Query: 49 WAKSFNNLLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKK 90
WA SF+ LL+ G+ FR +L +E + LEFW ACE KK
Sbjct: 35 WADSFDVLLSHKYGVAAFRAFLKTEFSEENLEFWLACEEFKK 76
>pdb|3C7L|A Chain A, Molecular Architecture Of Galphao And The Structural
Basis For Rgs16-Mediated Deactivation
pdb|3C7L|B Chain B, Molecular Architecture Of Galphao And The Structural
Basis For Rgs16-Mediated Deactivation
Length = 137
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 45 NYLEWAKSFNNLLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKK 90
+ L W +SF+ LLN G+ F +L +E + LEFW ACE KK
Sbjct: 14 DVLGWRESFDLLLNSKNGVAAFHAFLKTEFSEENLEFWLACEEFKK 59
>pdb|2JNU|A Chain A, Solution Structure Of The Rgs Domain Of Human Rgs14
Length = 154
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 11/85 (12%)
Query: 49 WAKSFNNLLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKK--QTNQDQINLIVKCIYR 106
WA SF LL DP GL F ++L E ++ + FW ACE ++ ++ Q+ + IY+
Sbjct: 11 WALSFERLLQDPLGLAYFTEFLKKEFSAENVTFWKACERFQQIPASDTQQLAQEARNIYQ 70
Query: 107 RYFK---------DSRLGLSEECLS 122
+ D + L EE L+
Sbjct: 71 EFLSSQALSPVNIDRQAWLGEEVLA 95
>pdb|3C7K|B Chain B, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
pdb|3C7K|D Chain D, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
Length = 129
Score = 43.5 bits (101), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 34/66 (51%)
Query: 45 NYLEWAKSFNNLLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKKQTNQDQINLIVKCI 104
+ L W +SF+ LLN G+ F +L +E + LEFW ACE KK + ++ I
Sbjct: 6 DVLGWRESFDLLLNSKNGVAAFHAFLKTEFSEENLEFWLACEEFKKIRSATKLASRAHHI 65
Query: 105 YRRYFK 110
+ Y +
Sbjct: 66 FDEYIR 71
>pdb|2ES0|A Chain A, Structure Of The Regulator Of G-Protein Signaling Domain
Of Rgs6
Length = 148
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 27/47 (57%)
Query: 49 WAKSFNNLLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKKQTNQD 95
W SF+ +L D G F ++L SE S+ L FW A + LKKQ QD
Sbjct: 11 WGFSFDEILKDQVGRDQFLRFLESEFSSENLRFWLAVQDLKKQPLQD 57
>pdb|2BT2|A Chain A, Structure Of The Regulator Of G-Protein Signaling 16
pdb|2BT2|B Chain B, Structure Of The Regulator Of G-Protein Signaling 16
pdb|2BT2|C Chain C, Structure Of The Regulator Of G-Protein Signaling 16
pdb|2BT2|D Chain D, Structure Of The Regulator Of G-Protein Signaling 16
pdb|2BT2|E Chain E, Structure Of The Regulator Of G-Protein Signaling 16
Length = 161
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 45 NYLEWAKSFNNLLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKK 90
+ L W +SF+ LL+ G+ F +L +E + LEFW ACE KK
Sbjct: 29 DVLGWRESFDLLLSSKNGVAAFHAFLKTEFSEENLEFWLACEEFKK 74
>pdb|2BV1|A Chain A, Regulator Of G-Protein Signalling 1 (Human)
pdb|2BV1|B Chain B, Regulator Of G-Protein Signalling 1 (Human)
pdb|2GTP|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
pdb|2GTP|D Chain D, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
Length = 145
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 42 SPPNYLEWAKSFNNLLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKKQTNQDQINLIV 101
S ++W++S LL + G ++F +L SE + +EFW ACE KK T D +
Sbjct: 15 SAAEVMQWSQSLEKLLANQTGQNVFGSFLKSEFSEENIEFWLACEDYKK-TESDLLPCKA 73
Query: 102 KCIYRRY 108
+ IY+ +
Sbjct: 74 EEIYKAF 80
>pdb|2IK8|B Chain B, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
pdb|2IK8|D Chain D, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
Length = 140
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 45 NYLEWAKSFNNLLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKK 90
+ L W +SF+ LL+ G+ F +L +E + LEFW ACE KK
Sbjct: 8 DVLGWRESFDLLLSSKNGVAAFHAFLKTEFSEENLEFWLACEEFKK 53
>pdb|2PBI|A Chain A, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|C Chain C, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 424
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 49 WAKSFNNLLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKKQTNQDQINLIVKCIYRRY 108
WA +F+ L+ DP+G F+ +L E + L FW ACE L K +Q ++ + IY+ +
Sbjct: 298 WAFNFSELIRDPKGRQSFQYFLKKEFSGENLGFWEACEDL-KYGDQSKVKEKAEEIYKLF 356
Query: 109 F 109
Sbjct: 357 L 357
>pdb|1FQJ|B Chain B, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQJ|E Chain E, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|B Chain B, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|D Chain D, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
Length = 147
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 49 WAKSFNNLLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKKQTNQDQINLIVKCIYRRY 108
WA +F+ L+ DP+G F+ +L E + L FW ACE L K +Q ++ + IY+ +
Sbjct: 21 WAFNFSELIRDPKGRQSFQHFLRKEFSGENLGFWEACEDL-KYGDQSKVKEKAEEIYKLF 79
Query: 109 F 109
Sbjct: 80 L 80
>pdb|1FQI|A Chain A, Rgs9 Rgs Domain
Length = 147
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 49 WAKSFNNLLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKKQTNQDQINLIVKCIYRRY 108
WA +F+ L+ DP+G F+ +L E + L FW ACE L K +Q ++ + IY+ +
Sbjct: 21 WAFNFSELIRDPKGRQSFQHFLRKEFSGENLGFWEACEDL-KYGDQSKVKEKAEEIYKLF 79
>pdb|2A72|A Chain A, Structure Of The Regulator Of G-Protein Signaling Domain
Of Rgs7
pdb|2A72|B Chain B, Structure Of The Regulator Of G-Protein Signaling Domain
Of Rgs7
Length = 146
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 23/43 (53%)
Query: 49 WAKSFNNLLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKKQ 91
W + L DP G F K+L SE S+ L FW A E LKK+
Sbjct: 13 WGFGMDEALKDPVGREQFLKFLESEFSSENLRFWLAVEDLKKR 55
>pdb|2D9J|A Chain A, Solution Structure Of The Rgs Domain Of Regulator Of G-
Protein Signaling 7
Length = 139
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 23/43 (53%)
Query: 49 WAKSFNNLLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKKQ 91
W + L DP G F K+L SE S+ L FW A E LKK+
Sbjct: 15 WGFGMDEALKDPVGREQFLKFLESEFSSENLRFWLAVEDLKKR 57
>pdb|2EBZ|A Chain A, Solution Structure Of The Rgs Domain From Human
Regulator Of G-Protein Signaling 12 (Rgs12)
Length = 155
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 21/38 (55%)
Query: 49 WAKSFNNLLNDPEGLHLFRKYLASENQSDLLEFWFACE 86
WA SF LL DP G+ F +L E + + FW ACE
Sbjct: 15 WAVSFERLLQDPVGVRYFSDFLRKEFSEENILFWQACE 52
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.128 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,599,440
Number of Sequences: 62578
Number of extensions: 316032
Number of successful extensions: 974
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 940
Number of HSP's gapped (non-prelim): 36
length of query: 410
length of database: 14,973,337
effective HSP length: 101
effective length of query: 309
effective length of database: 8,652,959
effective search space: 2673764331
effective search space used: 2673764331
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)