Query psy3228
Match_columns 410
No_of_seqs 136 out of 721
Neff 3.3
Searched_HMMs 46136
Date Fri Aug 16 19:38:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3228.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3228hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3589|consensus 99.9 1.2E-21 2.6E-26 181.1 11.4 113 40-157 68-185 (221)
2 smart00315 RGS Regulator of G 99.9 4E-21 8.7E-26 154.3 12.2 101 52-157 1-104 (118)
3 PF00615 RGS: Regulator of G p 99.8 2.5E-19 5.4E-24 141.8 11.2 101 52-157 1-104 (118)
4 KOG3590|consensus 99.1 4.6E-10 9.9E-15 115.5 9.3 108 47-157 109-292 (602)
5 KOG3590|consensus 98.6 2E-07 4.4E-12 96.4 8.7 104 50-157 315-428 (602)
6 PF09128 RGS-like: Regulator o 97.9 5.8E-05 1.3E-09 70.9 8.7 104 51-157 6-112 (188)
7 KOG0986|consensus 96.7 0.0064 1.4E-07 64.7 8.7 106 49-157 49-157 (591)
8 PF04858 TH1: TH1 protein; In 50.0 1.3E+02 0.0027 33.5 10.2 96 53-157 140-246 (584)
9 PF15182 OTOS: Otospiralin 42.0 31 0.00068 28.5 3.2 35 78-112 24-58 (69)
10 PF12238 MSA-2c: Merozoite sur 31.7 5.1E+02 0.011 25.5 12.3 20 97-116 82-101 (205)
11 KOG2249|consensus 21.7 27 0.00059 35.5 -0.3 54 97-157 132-185 (280)
12 COG5665 NOT5 CCR4-NOT transcri 21.5 3E+02 0.0065 30.0 7.0 36 330-366 390-425 (548)
13 KOG0016|consensus 21.2 3.8E+02 0.0082 27.4 7.4 23 14-37 143-165 (266)
14 PF10281 Ish1: Putative stress 21.1 1E+02 0.0022 21.8 2.5 19 379-398 19-37 (38)
15 KOG1915|consensus 20.7 2.1E+02 0.0045 32.1 5.9 63 44-112 138-204 (677)
16 COG4748 Uncharacterized conser 20.7 2.1E+02 0.0045 30.2 5.6 57 55-111 166-227 (365)
17 PRK13676 hypothetical protein; 20.6 5.3E+02 0.012 21.9 8.1 60 44-110 20-79 (114)
18 PF08515 TGF_beta_GS: Transfor 20.2 66 0.0014 22.7 1.4 17 150-166 3-19 (29)
No 1
>KOG3589|consensus
Probab=99.86 E-value=1.2e-21 Score=181.05 Aligned_cols=113 Identities=27% Similarity=0.456 Sum_probs=102.5
Q ss_pred CCChhhHHHHHHhHHHHhCChHHHHHHHHHHHhcCChhhHHHHHHHHhhhcCCCH--HHHHHHHHHHHHhhhcCC---CC
Q psy3228 40 STSPPNYLEWAKSFNNLLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKKQTNQ--DQINLIVKCIYRRYFKDS---RL 114 (410)
Q Consensus 40 s~SpP~~lrWA~SLesLL~DP~GrqLFReFLeqEfSeENLdFWLAcEgFKk~~D~--ek~lKlAK~IYdKYIsss---EV 114 (410)
.+...++.+|+.+|+.||.|+.|+..|..||++|+++|||+||+|||+||+.... .++...|+.||.+||.+. +|
T Consensus 68 ~~~~e~~~~w~~sf~~L~~~~~G~~~F~~fLk~e~Seeni~FW~ace~~k~~~~~~~~~~~~~a~~i~~~f~~~~ap~~v 147 (221)
T KOG3589|consen 68 LPSREEVESWAKSFEKLLADEAGRAVFAEFLKSEFSEENLEFWLACEEFKKRRSEKSTKMSEKAKEIYEEFSAPAAPKEV 147 (221)
T ss_pred CCCHHHHHHHHHhHHHHhhChhhHHHHHHHHHHHhhHhHHHHHHHHHHHHhCcCchhhhhhHHHHHHHHHHhccCCCCCC
Confidence 4556789999999999999999999999999999999999999999999999765 689999999999999885 89
Q ss_pred CCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHHHhhc
Q psy3228 115 GLSEECLSSVLEDIRAASRTSPNLSSRMFAESQLEVERIINVV 157 (410)
Q Consensus 115 NIPeqVRkeIkeRIKE~i~nk~~pdpdmFDeAQ~EIynLMEdD 157 (410)
||+..+|..|.+.|.+. ...+++||.||.+||.||++|
T Consensus 148 n~d~~tre~~~~~l~~p-----~~~~~~f~~Aq~~i~~lm~~d 185 (221)
T KOG3589|consen 148 NLDSKTRELTNRNLSEP-----SGQRTCFDEAQKHVYTLMEKD 185 (221)
T ss_pred CCchHHHHHHHHHhcCC-----CCCCCcHHHHHHHHHHhcccC
Confidence 99999988887777653 124999999999999999999
No 2
>smart00315 RGS Regulator of G protein signalling domain. RGS family members are GTPase-activating proteins for heterotrimeric G-protein alpha-subunits.
Probab=99.86 E-value=4e-21 Score=154.29 Aligned_cols=101 Identities=29% Similarity=0.519 Sum_probs=93.7
Q ss_pred hHHHHhCChHHHHHHHHHHHhcCChhhHHHHHHHHhhhcCCCHHHHHHHHHHHHHhhhcCC---CCCCCHHHHHHHHHHH
Q psy3228 52 SFNNLLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKKQTNQDQINLIVKCIYRRYFKDS---RLGLSEECLSSVLEDI 128 (410)
Q Consensus 52 SLesLL~DP~GrqLFReFLeqEfSeENLdFWLAcEgFKk~~D~ek~lKlAK~IYdKYIsss---EVNIPeqVRkeIkeRI 128 (410)
+|++||.||.|+.+|++||++++|.|+|.||.+|++||...+..++.+.|+.||++||.++ ++||+..+|..|..++
T Consensus 1 ~l~~il~d~~~~~~F~~fl~~~~~~e~l~F~~~v~~~~~~~~~~~~~~~a~~I~~~yi~~~s~~~~ni~~~~~~~i~~~~ 80 (118)
T smart00315 1 SLESLLSDPIGRLLFREFLESEFSEENLEFWLAVEEFKKAEDDEERIAKAREIYDKFLSPNAPKEVNLDSDLREKIEENL 80 (118)
T ss_pred CHHHHhcChHHHHHHHHHHHHhcchHhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCCCCceeCCHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999887899999999999999986 8999999999988877
Q ss_pred HHhhccCCCCChhHHHHHHHHHHHHHhhc
Q psy3228 129 RAASRTSPNLSSRMFAESQLEVERIINVV 157 (410)
Q Consensus 129 KE~i~nk~~pdpdmFDeAQ~EIynLMEdD 157 (410)
... .+++++|++||.+|+.+|+.+
T Consensus 81 ~~~-----~~~~~~F~~~~~~v~~~l~~~ 104 (118)
T smart00315 81 ESE-----EPPPDLFDEAQEEVYELLEKD 104 (118)
T ss_pred hcC-----CCChHHHHHHHHHHHHHHhcC
Confidence 653 578999999999999999877
No 3
>PF00615 RGS: Regulator of G protein signaling domain; InterPro: IPR000342 RGS (Regulator of G Protein Signalling) proteins are multi-functional, GTPase-accelerating proteins that promote GTP hydrolysis by the alpha subunit of heterotrimeric G proteins, thereby inactivating the G protein and rapidly switching off G protein-coupled receptor signalling pathways []. Upon activation by GPCRs, heterotrimeric G proteins exchange GDP for GTP, are released from the receptor, and dissociate into free, active GTP-bound alpha subunit and beta-gamma dimer, both of which activate downstream effectors. The response is terminated upon GTP hydrolysis by the alpha subunit (IPR001019 from INTERPRO), which can then bind the beta-gamma dimer (IPR001632 from INTERPRO, IPR001770 from INTERPRO) and the receptor. RGS proteins markedly reduce the lifespan of GTP-bound alpha subunits by stabilising the G protein transition state. All RGS proteins contain an 'RGS-box' (or RGS domain), which is required for activity. Some small RGS proteins such as RGS1 and RGS4 are comprised of little more than an RGS domain, while others also contain additional domains that confer further functionality []. RGS domains can be found in conjunction with a variety of domains, including: DEP for membrane targeting (IPR000591 from INTERPRO), PDZ for binding to GPCRs (IPR001478 from INTERPRO), PTB for phosphotyrosine-binding (IPR006020 from INTERPRO), RBD for Ras-binding (IPR003116 from INTERPRO), GoLoco for guanine nucleotide inhibitor activity (IPR003109 from INTERPRO), PX for phosphatidylinositol-binding (IPR001683 from INTERPRO), PXA that is associated with PX (IPR003114 from INTERPRO), PH for stimulating guanine nucleotide exchange (IPR001849 from INTERPRO), and GGL (G protein gamma subunit-like) for binding G protein beta subunits (IPR001770 from INTERPRO) []. Those RGS proteins that contain GGL domains can interact with G protein beta subunits to form novel dimers that prevent G protein gamma subunit binding and G protein alpha subunit association, thereby preventing heterotrimer formation.; GO: 0004871 signal transducer activity; PDB: 2BCJ_A 3PSC_A 3PVU_A 1YM7_B 3PVW_A 1OMW_A 2EBZ_A 2BV1_B 2GTP_D 1CMZ_A ....
Probab=99.81 E-value=2.5e-19 Score=141.83 Aligned_cols=101 Identities=30% Similarity=0.574 Sum_probs=92.4
Q ss_pred hHHHHhCChHHHHHHHHHHHhcCChhhHHHHHHHHhhhcCCCHHHHHHHHHHHHHhhhcCC---CCCCCHHHHHHHHHHH
Q psy3228 52 SFNNLLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKKQTNQDQINLIVKCIYRRYFKDS---RLGLSEECLSSVLEDI 128 (410)
Q Consensus 52 SLesLL~DP~GrqLFReFLeqEfSeENLdFWLAcEgFKk~~D~ek~lKlAK~IYdKYIsss---EVNIPeqVRkeIkeRI 128 (410)
+|++||.|+.++.+|++||++++|.++|.||++|+.|++..+...+.+.|+.||++||.++ +|||+..+++.+.+.+
T Consensus 1 s~~~il~~~~~~~~F~~Fl~~~~~~~~l~F~~~v~~~~~~~~~~~~~~~a~~I~~~fi~~~s~~~l~i~~~~~~~~~~~~ 80 (118)
T PF00615_consen 1 SFEKILEDPEGLELFKEFLEKENCEENLQFWLEVEEFKSSESEEQRKKLAQQIYNKFISPGSPNELNIPSKIRKEVQDAL 80 (118)
T ss_dssp -HHHHHHSHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHTSCSHHHHHHHHHHHHHHHTSTTSTTCCSSTHHHHHHHHHHH
T ss_pred CHHHHHCChHHHHHHHHHHhHCCCHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHhcccccccccccHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999888899999999999999775 8999999999887777
Q ss_pred HHhhccCCCCChhHHHHHHHHHHHHHhhc
Q psy3228 129 RAASRTSPNLSSRMFAESQLEVERIINVV 157 (410)
Q Consensus 129 KE~i~nk~~pdpdmFDeAQ~EIynLMEdD 157 (410)
... .+.+++|+.||.+|+.+|+++
T Consensus 81 ~~~-----~~~~~~f~~a~~~v~~~L~~~ 104 (118)
T PF00615_consen 81 ENA-----PPSPDLFDEAQEEVYEMLEED 104 (118)
T ss_dssp TST-----STTTTTTHHHHHHHHHHHHHT
T ss_pred HHh-----cccHHHHHHHHHHHHHHHhhc
Confidence 653 578999999999999999876
No 4
>KOG3590|consensus
Probab=99.06 E-value=4.6e-10 Score=115.48 Aligned_cols=108 Identities=19% Similarity=0.345 Sum_probs=90.9
Q ss_pred HHHHHhHHHHhCChHHHHHHHHHHHhcCChhhHHHHHHHHhhhcCC-----------------------CHH---H----
Q psy3228 47 LEWAKSFNNLLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKKQT-----------------------NQD---Q---- 96 (410)
Q Consensus 47 lrWA~SLesLL~DP~GrqLFReFLeqEfSeENLdFWLAcEgFKk~~-----------------------D~e---k---- 96 (410)
.+.+.+|+.||.|+..+.||.+||.....-.+|.||+.+|+||... |.+ +
T Consensus 109 s~Ls~~L~~il~D~~~LSYFiQYLD~r~~L~LIKFwl~~E~FKs~~~~Qi~aep~~p~~k~~~~~s~~~ddk~aqELKt~ 188 (602)
T KOG3590|consen 109 SSLSKTLEQVLHDTIVLSYFIQYLDLRRMLHLIKFWLEAESFKSTTWSQIRAEPVSPSKKHETTASFLTDDKRAQELKTH 188 (602)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHHHhHHHHHHHHHhhhhhhHHHHHHHhhccCCCchhhcccccccccchhhHHHHhh
Confidence 5688999999999999999999999999999999999999999742 000 0
Q ss_pred ---------------------------------------H----HHHHHHHHHhhhcCC---CCCCCHHHHHHHHHHHHH
Q psy3228 97 ---------------------------------------I----NLIVKCIYRRYFKDS---RLGLSEECLSSVLEDIRA 130 (410)
Q Consensus 97 ---------------------------------------~----lKlAK~IYdKYIsss---EVNIPeqVRkeIkeRIKE 130 (410)
+ -+.|..||.+||.++ +|.|+..++..|..+|..
T Consensus 189 ~~~s~r~~~~~~~~~~i~~et~~~~~~~~~~s~~~~aspL~~~s~~dai~~~~ky~~~~a~~~i~~~~~~~~~i~~~~cg 268 (602)
T KOG3590|consen 189 SEHSLRLEMARAGTHQVSMETQESSSTLTVASRNSPASPLKELSGKDAVNTFTKYISPDAAKPIPITEAMRNDIIARICG 268 (602)
T ss_pred hhhhhcccccccccchhhhhhhhhhccccccccccccchhhhhcchhhhhhhhhhcccccccCccchHHHHhhHHHHHhc
Confidence 1 234788999999997 788999998888777654
Q ss_pred hhccCCCCChhHHHHHHHHHHHHHhhc
Q psy3228 131 ASRTSPNLSSRMFAESQLEVERIINVV 157 (410)
Q Consensus 131 ~i~nk~~pdpdmFDeAQ~EIynLMEdD 157 (410)
. ..++++.+||+||..|+.-||.|
T Consensus 269 ~---d~~i~~~CFDEAq~~v~~~~e~D 292 (602)
T KOG3590|consen 269 E---DGQVDPNCFDEAQSIVFSAMEQD 292 (602)
T ss_pred c---CCCCCchHHHHHHHHHHHHHHHH
Confidence 2 34789999999999999999999
No 5
>KOG3590|consensus
Probab=98.55 E-value=2e-07 Score=96.41 Aligned_cols=104 Identities=16% Similarity=0.327 Sum_probs=89.5
Q ss_pred HHhHHHHhCChHHHHHHHHHHHhcCChhhHHHHHHHHhhhcCC-------CHHHHHHHHHHHHHhhhcCC---CCCCCHH
Q psy3228 50 AKSFNNLLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKKQT-------NQDQINLIVKCIYRRYFKDS---RLGLSEE 119 (410)
Q Consensus 50 A~SLesLL~DP~GrqLFReFLeqEfSeENLdFWLAcEgFKk~~-------D~ek~lKlAK~IYdKYIsss---EVNIPeq 119 (410)
..+|.+||...-.+-+|.+||+++...|.|.||++|..|++.- +.++.+..|..||+|||.-. .+.++..
T Consensus 315 sv~laDiL~~e~aLfyF~Ey~e~~~~~~~lqFwl~adnF~~~la~~E~~~d~~eAq~DAMilYdKYFSlQat~~l~~~~~ 394 (602)
T KOG3590|consen 315 TVYLADILFCESALFYFSEYMEKEDAVNILQFWLAADNFQSQLAAKEGQYDGQEAQNDAMILYDKYFSLQATHPLGFDDV 394 (602)
T ss_pred cEeHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHhhhhcccccchhhhhcchhHHHHHHhhhhccCccchhHH
Confidence 3679999999999999999999999999999999999999863 34467888999999999875 5778888
Q ss_pred HHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHHHhhc
Q psy3228 120 CLSSVLEDIRAASRTSPNLSSRMFAESQLEVERIINVV 157 (410)
Q Consensus 120 VRkeIkeRIKE~i~nk~~pdpdmFDeAQ~EIynLMEdD 157 (410)
+|.+|...|.+ ...|.+..|+.|-...+..|++.
T Consensus 395 ~RlevEs~IC~----e~gp~~~AF~tAl~~~~~~Le~K 428 (602)
T KOG3590|consen 395 VRLEIESNICR----EGGPLPNAFTTALRQAWTTLEKK 428 (602)
T ss_pred HHHHHHHHhcc----CCCCchhHHHHHHHHHHHHHHHH
Confidence 88887766654 34588999999999999999887
No 6
>PF09128 RGS-like: Regulator of G protein signalling-like domain; InterPro: IPR015212 This entry represents a domain consisting of twelve helices that fold into a compact structure that contains the overall structural scaffold observed in other regulator of G protein signalling (RGS) proteins and three additional helical elements that pack closely to it. Helices 1-9 comprise the RGS fold, in which helices 4-7 form a classic antiparallel bundle adjacent to the other helices. Like other RGS structures, helices 7 and 8 span the length of the folded domain and form essentially one continuous helix with a kink in the middle. Helices 10-12 form an apparently stable C-terminal extension of the structural domain, and although other RGS proteins lack this structure, these elements are intimately associated with the rest of the structural framework by hydrophobic interactions. This domain binds to active G-alpha proteins, promoting GTP hydrolysis by the alpha subunit of heterotrimeric G proteins, thereby inactivating the G protein and rapidly switching off G protein-coupled receptor signalling pathways []. ; GO: 0005089 Rho guanyl-nucleotide exchange factor activity, 0005737 cytoplasm; PDB: 3CX6_B 3CX8_B 3CX7_B 1HTJ_F 1SHZ_C 3AB3_D 1IAP_A.
Probab=97.88 E-value=5.8e-05 Score=70.86 Aligned_cols=104 Identities=18% Similarity=0.250 Sum_probs=79.5
Q ss_pred HhHHHHhCChHHHHHHHHHHHhcCChhhHHHHHHHHhhhcCCCHHHHHHHHHHHHHhhhcCC---CCCCCHHHHHHHHHH
Q psy3228 51 KSFNNLLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKKQTNQDQINLIVKCIYRRYFKDS---RLGLSEECLSSVLED 127 (410)
Q Consensus 51 ~SLesLL~DP~GrqLFReFLeqEfSeENLdFWLAcEgFKk~~D~ek~lKlAK~IYdKYIsss---EVNIPeqVRkeIkeR 127 (410)
.+|+.|...|.-+.-|..|+-..+--..|.||+-.+-||.. +.++.++.|..||.+||.++ .|++|+.+..+|.+.
T Consensus 6 ~sl~~Lk~rPaHlaVFl~yv~sq~dP~~LLfyL~~d~yk~~-~~Ke~rk~~~ei~stFL~~~ApL~v~v~~~v~~ei~~~ 84 (188)
T PF09128_consen 6 QSLELLKSRPAHLAVFLNYVLSQFDPSPLLFYLIADLYKQG-NAKEMRKWAYEIHSTFLDPGAPLRVNVPESVASEIDRT 84 (188)
T ss_dssp HSHHHHHC-HHHHHHHHHHHHHHS-SHHHHHHHHHHHHTTS--TTCHHHHHHHHHHHHTSTT-TT-----HHHHHHHTT-
T ss_pred cCHHHHhcCcHHHHHHHHHHHhcCCcchHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHcCCCCCceecCCHHHHHhHHhh
Confidence 46889999999999999999999999999999999999995 56789999999999999997 678999998888543
Q ss_pred HHHhhccCCCCChhHHHHHHHHHHHHHhhc
Q psy3228 128 IRAASRTSPNLSSRMFAESQLEVERIINVV 157 (410)
Q Consensus 128 IKE~i~nk~~pdpdmFDeAQ~EIynLMEdD 157 (410)
-.+. ...+.-+.+|.+||..+..-+.+.
T Consensus 85 ~~~~--~~~e~~r~~f~~~~~~a~~eI~~q 112 (188)
T PF09128_consen 85 RPEL--IKEEILRQIFQEAQQRALPEIQEQ 112 (188)
T ss_dssp HHHH--CTTHCHHHHHHHHHHHHHHHHHHH
T ss_pred cccc--CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 223566889999998887777665
No 7
>KOG0986|consensus
Probab=96.69 E-value=0.0064 Score=64.73 Aligned_cols=106 Identities=14% Similarity=0.190 Sum_probs=76.8
Q ss_pred HHHhHHHHhC-ChHHHHHHHHHHHh-cCChhhHHHHHHHHhhhcCCCHHHHHHHHHHHHHhhhcCC-CCCCCHHHHHHHH
Q psy3228 49 WAKSFNNLLN-DPEGLHLFRKYLAS-ENQSDLLEFWFACEGLKKQTNQDQINLIVKCIYRRYFKDS-RLGLSEECLSSVL 125 (410)
Q Consensus 49 WA~SLesLL~-DP~GrqLFReFLeq-EfSeENLdFWLAcEgFKk~~D~ek~lKlAK~IYdKYIsss-EVNIPeqVRkeIk 125 (410)
-...++.|.+ -|.|+.+|++||+. +.-.-.+.||-+|++|.... .+++...++.||+.||... ...++.--.+.+.
T Consensus 49 ~e~~f~sl~~~QpIGrlLFr~Fc~~~~~~~~~i~Fl~~v~eYE~~~-~~~r~~~~~~i~~~~l~~~~~~~~~~~s~~~~v 127 (591)
T KOG0986|consen 49 LELTFESLCEKQPIGRLLFRDFCENRPELRPAIEFLEEVKEYEKAD-DDERKDKARQILDAYLMKELLACLPQFSSKDLV 127 (591)
T ss_pred hcccHHHHhccCcHHHHHHHHHHhcCchhhhHHHHHHHHHHHhcCC-cccchhhHHHHHHHHhhccccccCCCcchhhhh
Confidence 4456778877 89999999999995 34567899999999999985 6689999999999999864 1122221112233
Q ss_pred HHHHHhhccCCCCChhHHHHHHHHHHHHHhhc
Q psy3228 126 EDIRAASRTSPNLSSRMFAESQLEVERIINVV 157 (410)
Q Consensus 126 eRIKE~i~nk~~pdpdmFDeAQ~EIynLMEdD 157 (410)
..++..+.. .+.+++|...-..|...|..+
T Consensus 128 ~~~~~~l~~--~~~~~lf~~~~~~~~~~L~~~ 157 (591)
T KOG0986|consen 128 THVQEHLLE--KPPKDLFQPLARAICAYLRGD 157 (591)
T ss_pred HHHhhhccc--cCchhhhHHHHHHHHHHhccc
Confidence 344444332 368899999888888887776
No 8
>PF04858 TH1: TH1 protein; InterPro: IPR006942 TH1 is a highly conserved but uncharacterised metazoan protein. No homologue has been identified in Caenorhabditis elegans []. TH1 binds specifically to A-Raf kinase [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=49.99 E-value=1.3e+02 Score=33.49 Aligned_cols=96 Identities=10% Similarity=0.210 Sum_probs=63.7
Q ss_pred HHHHhCChHHHHHHHHHHHhcCChhhHHHHHHH---HhhhcCC--------CHHHHHHHHHHHHHhhhcCCCCCCCHHHH
Q psy3228 53 FNNLLNDPEGLHLFRKYLASENQSDLLEFWFAC---EGLKKQT--------NQDQINLIVKCIYRRYFKDSRLGLSEECL 121 (410)
Q Consensus 53 LesLL~DP~GrqLFReFLeqEfSeENLdFWLAc---EgFKk~~--------D~ek~lKlAK~IYdKYIsssEVNIPeqVR 121 (410)
|+.++.++.+|.+|.+..++.-....|.||+-. .||.... +.+-..+....-+.+|+..+ +.+.+
T Consensus 140 L~~mi~~~~WR~liy~Lae~~p~~l~L~faik~IsdaG~~~Ei~s~~taa~~~~VF~~vl~~~i~~~~~~~----~d~~~ 215 (584)
T PF04858_consen 140 LDEMIEHPRWRSLIYELAERHPDCLFLNFAIKLISDAGYQHEITSVSTAAQQFEVFSRVLKDSISRFLAAG----EDELQ 215 (584)
T ss_pred HHHHhcCcHHHHHHHHHHHHCCCCHHHHHHHHHHHHcchHHHHHhHHHHHHhHHHHHHHHHHHHHHHHcCC----cHHHH
Confidence 888999999999999998876677888998665 4555432 11223444445556666543 34455
Q ss_pred HHHHHHHHHhhccCCCCChhHHHHHHHHHHHHHhhc
Q psy3228 122 SSVLEDIRAASRTSPNLSSRMFAESQLEVERIINVV 157 (410)
Q Consensus 122 keIkeRIKE~i~nk~~pdpdmFDeAQ~EIynLMEdD 157 (410)
+.+. +++..+ +-+..+|--||.-+..|.++.
T Consensus 216 ~~~~-~l~k~~----C~sehTYlyaQ~lL~~L~~~~ 246 (584)
T PF04858_consen 216 EAIA-ELKKMC----CHSEHTYLYAQALLHELSQES 246 (584)
T ss_pred HHHH-HHHHHh----hcCCchHHHHHHHHHHHHhcc
Confidence 5543 333332 456778888998888888765
No 9
>PF15182 OTOS: Otospiralin
Probab=42.05 E-value=31 Score=28.45 Aligned_cols=35 Identities=17% Similarity=0.328 Sum_probs=29.0
Q ss_pred hHHHHHHHHhhhcCCCHHHHHHHHHHHHHhhhcCC
Q psy3228 78 LLEFWFACEGLKKQTNQDQINLIVKCIYRRYFKDS 112 (410)
Q Consensus 78 NLdFWLAcEgFKk~~D~ek~lKlAK~IYdKYIsss 112 (410)
.-+||--||.||.+.--.++..+|+..|..|=..+
T Consensus 24 tsDFW~YveyFrtlGAY~~indmARtfFAh~plG~ 58 (69)
T PF15182_consen 24 TSDFWNYVEYFRTLGAYNQINDMARTFFAHFPLGD 58 (69)
T ss_pred chHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccc
Confidence 35899999999999877789999999888776443
No 10
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=31.73 E-value=5.1e+02 Score=25.46 Aligned_cols=20 Identities=5% Similarity=-0.026 Sum_probs=11.2
Q ss_pred HHHHHHHHHHhhhcCCCCCC
Q psy3228 97 INLIVKCIYRRYFKDSRLGL 116 (410)
Q Consensus 97 ~lKlAK~IYdKYIsssEVNI 116 (410)
-.+.+..-|++-|...+-++
T Consensus 82 ~~~~~~~YyKkhIy~~d~~v 101 (205)
T PF12238_consen 82 GREKMTKYYKKHIYKEDSEV 101 (205)
T ss_pred cHHHHHHHHHHhccCccccc
Confidence 45556666666666543333
No 11
>KOG2249|consensus
Probab=21.68 E-value=27 Score=35.46 Aligned_cols=54 Identities=20% Similarity=0.210 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHHHhhc
Q psy3228 97 INLIVKCIYRRYFKDSRLGLSEECLSSVLEDIRAASRTSPNLSSRMFAESQLEVERIINVV 157 (410)
Q Consensus 97 ~lKlAK~IYdKYIsssEVNIPeqVRkeIkeRIKE~i~nk~~pdpdmFDeAQ~EIynLMEdD 157 (410)
+....+.+|++||++.+--.+--++.. -|+-. + -.+..-|+.||.+|.+||...
T Consensus 132 VN~~G~VvyDkyVkP~~~VtDyRT~vS---GIrpe--h--m~~A~pf~~aQ~ev~klL~gR 185 (280)
T KOG2249|consen 132 VNYHGHVVYDKYVKPTEPVTDYRTRVS---GIRPE--H--MRDAMPFKVAQKEVLKLLKGR 185 (280)
T ss_pred eeccCcEeeeeecCCCcccccceeeec---ccCHH--H--hccCccHHHHHHHHHHHHhCC
Confidence 355667899999999621111111110 01100 0 012346999999999999865
No 12
>COG5665 NOT5 CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=21.50 E-value=3e+02 Score=29.95 Aligned_cols=36 Identities=22% Similarity=0.084 Sum_probs=21.0
Q ss_pred hHHHHhhcCCcccccccCCceEEEeeeeeEeeccccc
Q psy3228 330 LTEDLASSLPTLHEDRYKGRAIVFASVSVVCLSLPTL 366 (410)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (410)
.+.+|.-.+||-|++-..--..|=++ -|-|+-+|..
T Consensus 390 y~K~l~l~h~tsH~~~~~~~~~vE~~-NiSlV~~Pn~ 425 (548)
T COG5665 390 YTKPLSLPHPTSHFFPNEPIRFVEPY-NVSLVLTPNE 425 (548)
T ss_pred hcchhhccCCCcccCCCCceeeeecc-ccceeecCCc
Confidence 46677788899998765443333332 2344445543
No 13
>KOG0016|consensus
Probab=21.16 E-value=3.8e+02 Score=27.38 Aligned_cols=23 Identities=48% Similarity=0.567 Sum_probs=17.9
Q ss_pred CCCCCCCccCCCCCCCCCCCCCCC
Q psy3228 14 GFAPLGFEPEGGSDSSPSPSGGGE 37 (410)
Q Consensus 14 ~~adLGfEPEGsa~S~t~pgggG~ 37 (410)
-.++||..|||++ |-|+|--+|+
T Consensus 143 Pfa~lGq~PEG~S-s~t~p~imG~ 165 (266)
T KOG0016|consen 143 PFAKLGQSPEGCS-SVTLPKIMGS 165 (266)
T ss_pred cchhcCCCCCcce-eeeehHhhch
Confidence 4789999999999 5776655554
No 14
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=21.14 E-value=1e+02 Score=21.83 Aligned_cols=19 Identities=42% Similarity=0.702 Sum_probs=13.8
Q ss_pred CCCCCCCCchhHHHHHHHhh
Q psy3228 379 PLPPGPKLTKDSLLATARKR 398 (410)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~ 398 (410)
+.|++. .|+|.||+.||+.
T Consensus 19 ~~~~~~-~~rd~Ll~~~k~~ 37 (38)
T PF10281_consen 19 PVPKSA-KTRDELLKLAKKN 37 (38)
T ss_pred CCCCCC-CCHHHHHHHHHHh
Confidence 444443 6999999999863
No 15
>KOG1915|consensus
Probab=20.74 E-value=2.1e+02 Score=32.07 Aligned_cols=63 Identities=17% Similarity=0.412 Sum_probs=41.9
Q ss_pred hhHHH-HHH--hHHHHhCChHH-HHHHHHHHHhcCChhhHHHHHHHHhhhcCCCHHHHHHHHHHHHHhhhcCC
Q psy3228 44 PNYLE-WAK--SFNNLLNDPEG-LHLFRKYLASENQSDLLEFWFACEGLKKQTNQDQINLIVKCIYRRYFKDS 112 (410)
Q Consensus 44 P~~lr-WA~--SLesLL~DP~G-rqLFReFLeqEfSeENLdFWLAcEgFKk~~D~ek~lKlAK~IYdKYIsss 112 (410)
|++.+ |-. .++++|.|-.| |+.|.++|+-+=-+.. |+..-.|..-. +-...|+.||.+|+...
T Consensus 138 PRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqa---W~sfI~fElRy---keieraR~IYerfV~~H 204 (677)
T KOG1915|consen 138 PRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQA---WLSFIKFELRY---KEIERARSIYERFVLVH 204 (677)
T ss_pred chHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHH---HHHHHHHHHHh---hHHHHHHHHHHHHheec
Confidence 66655 766 57889998665 6799999987655544 44433333221 23457899999999763
No 16
>COG4748 Uncharacterized conserved protein [Function unknown]
Probab=20.66 E-value=2.1e+02 Score=30.19 Aligned_cols=57 Identities=21% Similarity=0.394 Sum_probs=44.9
Q ss_pred HHhCChHHHHHHHHHHHhcC---ChhhHHHHHHHH--hhhcCCCHHHHHHHHHHHHHhhhcC
Q psy3228 55 NLLNDPEGLHLFRKYLASEN---QSDLLEFWFACE--GLKKQTNQDQINLIVKCIYRRYFKD 111 (410)
Q Consensus 55 sLL~DP~GrqLFReFLeqEf---SeENLdFWLAcE--gFKk~~D~ek~lKlAK~IYdKYIss 111 (410)
..-.+-.....|.+||.+|. +.|-+.|+.+-- +++.....++.....+.++..||..
T Consensus 166 ~~A~elkYt~eik~~la~e~~~Ps~Efvkffaa~v~~g~~t~~~~~kFt~ivk~~~~qFi~D 227 (365)
T COG4748 166 SFALELKYTKEIKAYLAKETNNPSVEFVKFFAAKVYTGFKTTSVDEKFTDIVKNAFSQFIND 227 (365)
T ss_pred HHHHHhhHHHHHHHHHHHhccCCCHHHHHHHHHHHhccceeeeHHHHHHHHHHHHHHHHHHH
Confidence 33345556778899999776 789999997654 7777767778899999999999976
No 17
>PRK13676 hypothetical protein; Provisional
Probab=20.57 E-value=5.3e+02 Score=21.89 Aligned_cols=60 Identities=12% Similarity=0.153 Sum_probs=40.4
Q ss_pred hhHHHHHHhHHHHhCChHHHHHHHHHHHhcCChhhHHHHHHHHhhhcCCCHHHHHHHHHHHHHhhhc
Q psy3228 44 PNYLEWAKSFNNLLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKKQTNQDQINLIVKCIYRRYFK 110 (410)
Q Consensus 44 P~~lrWA~SLesLL~DP~GrqLFReFLeqEfSeENLdFWLAcEgFKk~~D~ek~lKlAK~IYdKYIs 110 (410)
++|..+...-..|-.|+....+|.+|.+...--++. ..+-+..+ ++..+..+.+|.++-.
T Consensus 20 ~ey~~~~~A~~~l~~d~~a~~li~~F~~~q~~~~~~------q~~g~~~~-~e~~~~l~~l~~~i~~ 79 (114)
T PRK13676 20 PEYKALKEAKEAVKADEEAKKLFDEFRALQLEIQQK------QMTGQEIT-EEEQQKAQELGQKIQQ 79 (114)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH------HHcCCCCC-HHHHHHHHHHHHHHhc
Confidence 678888888999999999999999998854433222 22333222 4566666677776653
No 18
>PF08515 TGF_beta_GS: Transforming growth factor beta type I GS-motif; InterPro: IPR003605 Transforming growth factor beta (TGF-beta) is a member of a large family of secreted growth factors of central importance in eukaryotic development and homeostasis. Members of this family, which includes the activins, inhibins and bone morphogenic proteins (BMPs), bind to receptors that consist of two transmembrane serine/threonine (Ser/Thr) kinases called the type I and type II receptors. Type II activates Type I upon formation of the ligand receptor complex by multiply phosphorylating the GS domain, a short (~30 residues), highly conserved regulatory sequence just N-terminal to the kinase domain on the cytoplasmic side of the receptor. The GS domain is found only in the type I receptor family and is named for the TTSGSGSG sequence at its core. At least three, and perhaps four to five of the serines and threonines in the GS domain, must be phosphorylated to fully activate TbetaR-1 []. The GS domain forms a helix-loop-helix structure in which the sites of activating phosphorylation are situated in a loop known as the GS loop. One key role for phosphorylation is to block the adoption of an inactivating configuration by the GS domain [].; GO: 0004675 transmembrane receptor protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation, 0016020 membrane; PDB: 3MY0_H 3Q4U_B 3H9R_A 3MTF_B 3OOM_A 3KCF_C 3FAA_A 1IAS_A 1PY5_A 2X7O_C ....
Probab=20.17 E-value=66 Score=22.74 Aligned_cols=17 Identities=24% Similarity=0.388 Sum_probs=11.9
Q ss_pred HHHHHhhcccCCCCCCC
Q psy3228 150 VERIINVVVCSGSTTGS 166 (410)
Q Consensus 150 IynLMEdD~~s~s~~~~ 166 (410)
+..+|+++..|||+||=
T Consensus 3 l~dl~~~~~tSGSGSGl 19 (29)
T PF08515_consen 3 LKDLLEDSSTSGSGSGL 19 (29)
T ss_dssp HHHHHHHHHCCTSSSSS
T ss_pred HHHHhhccccCCCCCCc
Confidence 45677777788877764
Done!