RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3228
(410 letters)
>gnl|CDD|188662 cd08707, RGS_Axin, Regulator of G protein signaling (RGS) domain
found in the Axin protein. The RGS (Regulator of
G-protein Signaling) domain is an essential part of the
Axin protein. Axin is a member of the RA/RGS subfamily
of the RGS protein family, a diverse group of
multifunctional proteins that regulate cellular
signaling events downstream of G-protein coupled
receptors (GPCRs). As a major G-protein regulator, RGS
domain containing proteins are involved in many crucial
cellular processes such as regulation of intracellular
trafficking, glial differentiation, embryonic axis
formation, skeletal and muscle development, and cell
migration during early embryogenesis. RGS proteins
regulate many aspects of embryonic development such as
glial differentiation, embryonic axis formation, and
skeletal and muscle development. The RGS domain of Axin
is specifically interacts with the heterotrimeric
G-alpha12 protein, but not with closely related
G-alpha13, and provides a unique tool to regulate
G-alpha12-mediated signaling processes. The RGS domain
of Axin also interacts with the tumor suppressor protein
APC (Adenomatous Polyposis Coli) in order to control the
cytoplasmic level of the proto-oncogene, beta-catenin.
Length = 117
Score = 89.8 bits (223), Expect = 7e-22
Identities = 35/109 (32%), Positives = 59/109 (54%), Gaps = 17/109 (15%)
Query: 54 NNLLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKKQTNQDQINL-IVKCIYRRYFKDS 112
++LL+D +G+ LFR YL E +DLL+FWFAC G +K ++ ++ + K IYRRY KD+
Sbjct: 2 HSLLDDQDGIELFRTYLEQEGCADLLDFWFACNGFRKMSDSEEKRSKLAKAIYRRYIKDN 61
Query: 113 RLGLSEECLSSVLEDIRAASRT-------SPNLSSRMFAESQLEVERII 154
V ++ A+++ L MF ++Q E++ +
Sbjct: 62 ---------GIVSRQLKPATKSFIKECIKKQQLDPAMFDQAQTEIQTTM 101
>gnl|CDD|216023 pfam00615, RGS, Regulator of G protein signaling domain. RGS
family members are GTPase-activating proteins for
heterotrimeric G-protein alpha-subunits.
Length = 117
Score = 83.8 bits (208), Expect = 9e-20
Identities = 35/104 (33%), Positives = 51/104 (49%), Gaps = 5/104 (4%)
Query: 52 SFNNLLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKKQTNQDQINLIVKCIYRRYFKD 111
SF +LL+D G LFR++L SE + LEFW ACE KK + ++ + IY ++
Sbjct: 1 SFESLLSDQPGRRLFREFLESEFSEENLEFWLACEEFKKAKSDEERLKKAREIYNKFLAP 60
Query: 112 SRLGLSEECLSS-VLEDIRAASRTSPNLSSRMFAESQLEVERII 154
SE L S E I P+ +F E+Q EV ++
Sbjct: 61 D--SPSEINLDSDTREKIEENLEKQPSPD--LFDEAQEEVYDLM 100
>gnl|CDD|214613 smart00315, RGS, Regulator of G protein signalling domain. RGS
family members are GTPase-activating proteins for
heterotrimeric G-protein alpha-subunits.
Length = 118
Score = 70.0 bits (172), Expect = 7e-15
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 8/104 (7%)
Query: 52 SFNNLLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKKQTNQDQINLIVKCIYRRYFKD 111
S +LL+DP G LFR++L SE + LEFW A E KK + ++ + IY ++
Sbjct: 1 SLESLLSDPIGRLLFREFLESEFSEENLEFWLAVEEFKKAEDDEERIAKAREIYDKFLSP 60
Query: 112 SRLGLSEECL---SSVLEDIRAASRTSPNLSSRMFAESQLEVER 152
+ + + + S + E I S +F E+Q EV
Sbjct: 61 N----APKEVNLDSDLREKIEENL-ESEEPPPDLFDEAQREVYE 99
>gnl|CDD|188673 cd08718, RGS_RZ-like, Regulator of G protein signaling (RGS) domain
found in the RZ protein. The RGS (Regulator of
G-protein Signaling) domain is an essential part of the
RZ subfamily of the RGS protein family. They are a
diverse group of multifunctional proteins that regulate
cellular signaling events downstream of G-protein
coupled receptors (GPCRs). RGS proteins play critical
regulatory roles as GTPase activating proteins (GAPs) of
the heterotrimeric G-protein G-alpha-subunits.
Deactivation of G-protein signaling is controlled by RGS
domains, which accelerate GTPase activity of the alpha
subunit by hydrolysis of GTP to GDP, which results in
reassociation of the alpha-subunit with the
beta-gamma-dimer and inhibition of downstream activity.
As a major G-protein regulator, RGS domain containing
proteins are involved in many crucial cellular processes
such as regulation of intracellular trafficking, glial
differentiation, embryonic axis formation, skeletal and
muscle development, and cell migration during early
embryogenesis. The RZ subfamily of RGS proteins includes
RGS17, RGS19 (former GAIP), RGS20, and its splice
variant Ret-RGS.
Length = 118
Score = 62.5 bits (152), Expect = 4e-12
Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 4/102 (3%)
Query: 49 WAKSFNNLLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKKQTNQDQINLIVKCIYRRY 108
WA+SF+ L+ P G ++FR++L +E + + FW ACE LKK+ N+ I + IY Y
Sbjct: 1 WAQSFDKLMKSPAGRNVFREFLRTEYSEENMLFWLACEELKKEANKHVIEEKARLIYEDY 60
Query: 109 FKDSRLGLSEECLSSVLEDIRAASRTSPNLSSRMFAESQLEV 150
S L E L S + ++ + P S F ++QL++
Sbjct: 61 I--SILSPKEVSLDSRVREVINRNMLEP--SPHTFDDAQLQI 98
>gnl|CDD|188660 cd08705, RGS_R7-like, Regulator of G protein signaling (RGS) domain
found in the R7 subfamily of proteins. The RGS
(Regulator of G-protein Signaling) domain is an
essential part of the R7 (Neuronal RGS) protein
subfamily of the RGS protein family, a diverse group of
multifunctional proteins that regulate cellular
signaling events downstream of G-protein coupled
receptors (GPCRs). As a major G-protein regulator, RGS
domain containing proteins are involved in many crucial
cellular processes such as regulation of intracellular
trafficking, glial differentiation, embryonic axis
formation, skeletal and muscle development, and cell
migration during early embryogenesis. The R7 subfamily
includes RGS6, RGS7, RGS9, and RGS11, all of which, in
humans, are expressed predominantly in the nervous
system, form an obligatory complex with G-beta-5, and
play important roles in the regulation of crucial
neuronal processes. In addition, R7 proteins were found
to bind many other proteins outside of the G protein
signaling pathways including: m-opioid receptor,
beta-arrestin, alpha-actinin-2, NMDAR, polycystin,
spinophilin, guanylyl cyclase, among others.
Length = 121
Score = 60.7 bits (148), Expect = 2e-11
Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 8/91 (8%)
Query: 49 WAKSFNNLLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKKQTNQDQINLIVKCIYRRY 108
W SF+ LL DP G F K+L E + L FW AC+ LK Q+ V+ IY+ +
Sbjct: 5 WGFSFSELLKDPVGREQFLKFLEKEFSGENLRFWEACQDLKYGPQS-QVPEKVQEIYQEF 63
Query: 109 FKDSRLGLSEECLSSVLEDIRAASRTSPNLS 139
L+ S + D + T NL
Sbjct: 64 -------LAPGAPSWINIDSKTMEITLKNLK 87
>gnl|CDD|188698 cd08744, RGS_RGS17, Regulator of G protein signaling (RGS) domain
found in the RGS17 protein. The RGS (Regulator of
G-protein Signaling) domain is an essential part of the
RGS17 protein, a member of the RZ subfamily of the RGS
protein family. They are a diverse group of
multifunctional proteins that regulate cellular
signaling events downstream of G-protein coupled
receptors (GPCRs). As a major G-protein regulator, the
RGS domain containing proteins are involved in many
crucial cellular processes such as regulation of
intracellular trafficking, glial differentiation,
embryonic axis formation, skeletal and muscle
development, and cell migration during early
embryogenesis. RGS proteins play critical regulatory
roles as GTPase activating proteins (GAPs) of the
heterotrimeric G-protein G-alpha-subunits. Deactivation
of the G-protein signaling controlled by the RGS domain,
which accelerates GTPase activity of the alpha subunit
by hydrolysis of GTP to GDP, results in reassociation of
the alpha-subunit with the beta-gamma-dimer and
inhibition of downstream activity. The RZ subfamily of
RGS proteins includes RGS19 (former GAIP), RGS20, and
its splice variant Ret-RGS. RGS17 is a relatively
non-selective GAP for G-alpha-z and other G-alpha-i/o
proteins. RGS17 blocks dopamine receptor-mediated
inhibition of cAMP accumulation; it also blocks
thyrotropin releasing hormone-stimulated Ca++
mobilization. RGS17, like other members of RZ subfamily,
can act either as a GAP or as G-protein effector
antogonist.
Length = 118
Score = 59.7 bits (144), Expect = 4e-11
Identities = 33/107 (30%), Positives = 59/107 (55%), Gaps = 4/107 (3%)
Query: 49 WAKSFNNLLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKKQTNQDQINLIVKCIYRRY 108
W+++F+ ++ P G +LFR++L +E + L FW ACE LKK+ N+ I + IY Y
Sbjct: 1 WSQNFDKMMKTPAGRNLFREFLRTEYSEENLLFWLACEDLKKEQNKKVIEEKARLIYEDY 60
Query: 109 FKDSRLGLSEECLSSVLEDIRAASRTSPNLSSRMFAESQLEVERIIN 155
S L E L S + ++ + PN M+ ++QL++ +++
Sbjct: 61 I--SILSPKEVSLDSRVREVINRNLLDPN--PHMYEDAQLQIYTLMH 103
>gnl|CDD|188700 cd08746, RGS_RGS20, Regulator of G protein signaling (RGS) domain
found in the RGS20 protein. The RGS (Regulator of
G-protein Signaling) domain is an essential part of the
RGS20 protein (also known as RGSZ1), a member of the RZ
subfamily of the RGS protein family. They are a diverse
group of multifunctional proteins that regulate cellular
signaling events downstream of G-protein coupled
receptors (GPCRs). RGS proteins play critical regulatory
roles as GTPase activating proteins (GAPs) of the
heterotrimeric G-protein G-alpha-subunits. Deactivation
of G-protein signaling is controlled by the RGS domain,
which accelerates GTPase activity of the alpha subunit
by hydrolysis of GTP to GDP resulting in reassociation
of the alpha-subunit with the beta-gamma-dimer and
inhibition of downstream activity. As a major G-protein
regulator, the RGS domain containing proteins are
involved in many crucial cellular processes such as
regulation of intracellular trafficking, glial
differentiation, embryonic axis formation, skeletal and
muscle development, and cell migration during early
embryogenesis. The RZ subfamily of RGS proteins include
RGS17, RGS19 (former GAIP), and the splice variant of
RGS20, Ret-RGS. RGS20 is expressed exclusively in brain,
with the highest concentrations in the temporal lobe and
the caudate nucleus and may play a role in signaling
regulation in these brain regions. RGS20 acts as a GAP
of both G-alpha-z and G-alpha-I and controls signaling
in the mu opioid receptor pathway.
Length = 167
Score = 60.0 bits (145), Expect = 8e-11
Identities = 39/131 (29%), Positives = 61/131 (46%), Gaps = 11/131 (8%)
Query: 20 FEPEGGSDSSPSPSGGGEALSTSPPNYLEWAKSFNNLLNDPEGLHLFRKYLASENQSDLL 79
F EG + SP E + W +SF+ L+ P G + FR++L +E + +
Sbjct: 28 FRAEGIPNCEESPKPTLEEVCA-------WGQSFDKLMLTPAGRNAFREFLRTEFSEENM 80
Query: 80 EFWFACEGLKKQTNQDQINLIVKCIYRRYFKDSRLGLSEECLSSVLEDIRAASRTSPNLS 139
FW ACE LKK+ N+ I + IY Y S L E L S + ++ + P S
Sbjct: 81 LFWMACEELKKEANKSVIEEKARIIYEDYI--SILSPKEVSLDSRVREVINRNMLEP--S 136
Query: 140 SRMFAESQLEV 150
F ++QL++
Sbjct: 137 QHTFDDAQLQI 147
>gnl|CDD|188699 cd08745, RGS_RGS19, Regulator of G protein signaling (RGS) domain
found in the RGS19 protein. The RGS (Regulator of
G-protein Signaling) domain is an essential part of the
RGS19 protein (also known as GAIP), a member of the RZ
subfamily of the RGS protein family. They are a diverse
group of multifunctional proteins that regulate cellular
signaling events downstream of G-protein coupled
receptors (GPCRs). RGS proteins play critical regulatory
roles as GTPase activating proteins (GAPs) of the
heterotrimeric G-protein G-alpha-subunits. Deactivation
of G-protein signaling is controlled by RGS domains,
which accelerate GTPase activity of the alpha subunit by
hydrolysis of GTP to GDP, resulting in a reassociation
of the alpha-subunit with the beta-gamma-dimer and an
inhibition of downstream activity. As a major G-protein
regulator, the RGS domain containing proteins are
involved in many crucial cellular processes such as
regulation of intracellular trafficking, glial
differentiation, embryonic axis formation, skeletal and
muscle development, and cell migration during early
embryogenesis. The RZ subfamily of RGS proteins includes
RGS17, RGS20, and its splice variant Ret-RGS. RGS19
participates in regulation of dopamine receptor D2R and
D3R, as well as beta-adrenergic receptors .
Length = 118
Score = 58.5 bits (141), Expect = 1e-10
Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 4/102 (3%)
Query: 49 WAKSFNNLLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKKQTNQDQINLIVKCIYRRY 108
WA+SF+ L+ P G ++FR++L +E + + FW ACE LK + N+ I+ + IY Y
Sbjct: 1 WAQSFDKLMKSPAGRNVFREFLRTEYSEENMLFWLACEELKAEANKHVIDEKARLIYEDY 60
Query: 109 FKDSRLGLSEECLSSVLEDIRAASRTSPNLSSRMFAESQLEV 150
S L E L S + + P SS F ++QL++
Sbjct: 61 I--SILSPKEVSLDSRVREGINRKMQEP--SSHTFDDAQLQI 98
>gnl|CDD|188659 cd07440, RGS, Regulator of G protein signaling (RGS) domain
superfamily. The RGS domain is an essential part of the
Regulator of G-protein Signaling (RGS) protein family, a
diverse group of multifunctional proteins that regulate
cellular signaling events downstream of G-protein
coupled receptors (GPCRs). RGS proteins play critical
regulatory roles as GTPase activating proteins (GAPs) of
the heterotrimeric G-protein G-alpha-subunits. While
inactive, G-alpha-subunits bind GDP, which is released
and replaced by GTP upon agonist activation. GTP binding
leads to dissociation of the alpha-subunit and the
beta-gamma-dimer, allowing them to interact with
effectors molecules and propagate signaling cascades
associated with cellular growth, survival, migration,
and invasion. Deactivation of the G-protein signaling
controlled by the RGS domain accelerates GTPase activity
of the alpha subunit by hydrolysis of GTP to GDP, which
results in the reassociation of the alpha-subunit with
the beta-gamma-dimer and thereby inhibition of
downstream activity. As a major G-protein regulator, RGS
domain containing proteins are involved in many crucial
cellular processes such as regulation of intracellular
trafficking, glial differentiation, embryonic axis
formation, skeletal and muscle development, and cell
migration during early embryogenesis. RGS proteins are
also involved in apoptosis and cell proliferation, as
well as modulation of cardiac development. Several RGS
proteins can fine-tune immune responses, while others
play important roles in neuronal signals modulation.
Some RGS proteins are principal elements needed for
proper vision.
Length = 113
Score = 55.9 bits (135), Expect = 7e-10
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 13/104 (12%)
Query: 57 LNDPEGLHLFRKYLASENQSDLLEFWFACEGLKKQTNQDQINLIVKC---IYRRYF-KDS 112
L DP GL FR++L SE+ + LEFW A E KK T+ D + IY +Y KD+
Sbjct: 1 LRDPYGLEYFRQFLKSEHCEENLEFWLAVEKFKKTTSSD--EELKSKAKEIYDKYISKDA 58
Query: 113 --RLGLSEECLSSVLEDIRAASRTSPNLSSRMFAESQLEVERII 154
+ + E S+ E+I + P F E+Q + ++
Sbjct: 59 PKEINIPE----SIREEI-EENLEEPYPDPDCFDEAQEHILNLL 97
>gnl|CDD|188667 cd08712, RGS_RGS18, Regulator of G protein signaling (RGS) domain
found in the RGS18 protein. The RGS (Regulator of
G-protein Signaling) domain is an essential part of the
RGS18 protein. RGS18 is a member of the RGS protein
family, a diverse group of multifunctional proteins that
regulate cellular signaling events downstream of
G-protein coupled receptors (GPCRs). RGS proteins play
critical regulatory roles as GTPase activating proteins
(GAPs) of the heterotrimeric G-protein G-alpha subunits.
The RGS domain controls G-protein signaling by
accelerating the GTPase activity of the G-alpha subunit
which leads to G protein deactivation and promotes
desensitization. As a major G-protein regulator, RGS
domain containing proteins are involved in many crucial
cellular processes such as regulation of intracellular
trafficking, glial differentiation, embryonic axis
formation, skeletal and muscle development, and cell
migration during early embryogenesis. RGS18 is a member
of the R4/RGS subfamily and is expressed predominantly
in osteoclasts where it acts as a negative regulator of
the acidosis-induced osteoclastogenic OGR1/NFAT
signaling pathway. RANKL (receptor activator of nuclear
factor B ligand) stimulates osteoclastogenesis by
inhibiting expression of RGS18.
Length = 114
Score = 50.3 bits (120), Expect = 7e-08
Identities = 22/58 (37%), Positives = 34/58 (58%)
Query: 53 FNNLLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKKQTNQDQINLIVKCIYRRYFK 110
F+ LL+ +GL F ++L +E + +EFW ACE KK QI+L K IY ++ +
Sbjct: 1 FDKLLSHKDGLEAFTRFLKTEFSEENIEFWIACEDYKKSKTPQQIHLKAKAIYEKFIQ 58
>gnl|CDD|188669 cd08714, RGS_RGS4, Regulator of G protein signaling (RGS) domain
found in the RGS4 protein. The RGS (Regulator of
G-protein Signaling) domain is an essential part of the
RGS4 protein. RGS4 is a member of the R4/RGS subfamily
of the RGS family, a diverse group of multifunctional
proteins that regulate cellular signaling events
downstream of G-protein coupled receptors (GPCRs). As a
major G-protein regulator, RGS domain containing
proteins are involved in many crucial cellular processes
such as regulation of intracellular trafficking, glial
differentiation, embryonic axis formation, skeletal and
muscle development, and cell migration during early
embryogenesis. RGS proteins play critical regulatory
roles as GTPase activating proteins (GAPs) of the
heterotrimeric G-protein G-alpha subunits. The RGS
domain controls G-protein signaling by accelerating the
GTPase activity of the G-alpha subunit which leads to G
protein deactivation and promotes desensitization. RGS4
is expressed widely in brain including prefrontal
cortex, striatum, locus coeruleus (LC), and hippocampus
and has been implicated in regulation of opioid,
cholinergic, and serotonergic signaling. Dysfunctions in
RGS4 proteins are involved in etiology of Parkinson's
disease, addiction, and schizophrenia. RGS4 also is
up-regulated in the failing human heart. RGS4 interacts
with many binding partners outside of GPCR pathways,
including calmodulin, COP, Kir3, PIP, calcium/CaM, PA,
ErbB3, and 14-3-3.
Length = 114
Score = 50.3 bits (120), Expect = 8e-08
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 53 FNNLLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKKQTNQDQINLIVKCIYRRY 108
NL+N GL F+ +L SE + ++FW +CE KK + +++ + IY +
Sbjct: 1 LENLINHECGLAAFKAFLKSEYSEENIDFWVSCEDYKKTKSPSKLSPKARKIYEEF 56
>gnl|CDD|227709 COG5422, ROM1, RhoGEF, Guanine nucleotide exchange factor for
Rho/Rac/Cdc42-like GTPases [Signal transduction
mechanisms].
Length = 1175
Score = 52.6 bits (126), Expect = 2e-07
Identities = 30/152 (19%), Positives = 49/152 (32%), Gaps = 15/152 (9%)
Query: 167 SSGSHAGAVSQASQSTSQPDPPQPRQSSASDNQYPHSYGNQGIQHTSSAASDASSHSTRN 226
SG G+ Q ++ P SS P + + H + + +
Sbjct: 132 DSGPGDGSPVQKRKNPLLPS------SSTHGTHPPIVFTDNNGSHAGAPNARSRKEIPSL 185
Query: 227 QTSS-NMHQNMHQNMHSSGHQSNMHHSSGPNMHDSSGHQSM------HQSNMHQSGHQSN 279
+ S + + SS SN S P++ +S H S H S S
Sbjct: 186 GSQSMQLPSPHFRQKFSSSDTSNG--FSYPSIRKNSRHSSNSMPSFPHSSTAVLLKRHSG 243
Query: 280 MHQNMDLMSKSCPTSSSLALMAPQSGHPDNHP 311
+ S P+SS+ M+ S P +P
Sbjct: 244 SSGASLISSNITPSSSNSEAMSTSSKRPYIYP 275
Score = 34.5 bits (79), Expect = 0.13
Identities = 39/207 (18%), Positives = 66/207 (31%), Gaps = 13/207 (6%)
Query: 127 DIRAASRTSPNLSSRMFAESQLEVERIINVVVCSGSTTG--SSSGSHAGAVSQASQSTSQ 184
I ++ +SP L R + I + + ST+ S+ G S AS S S
Sbjct: 71 QIFSSFSSSPKLFQR-----RNSAGPITHSPSATSSTSSLNSNDGDQ---FSPASDSLSF 122
Query: 185 -PDPPQPRQSSASDNQYPHSYGNQGIQHTSSAASDASSHSTRNQTSSNMHQNMHQNMHSS 243
P Q R+ S + P + +SS + S+ +
Sbjct: 123 NPSSTQSRKDSGPGDGSPVQKRKNPLLPSSSTHGTHPPIVFTDNNGSHA-GAPNARSRKE 181
Query: 244 GHQSNMHHSSGPNMHDSSGHQSMHQSNMHQSGHQSNMHQNMDLMSKSCPTSSSLALMAPQ 303
P+ H S SN ++ S P SS+ L+
Sbjct: 182 IPSLGSQSMQLPSPHFRQKFSSSDTSNGFSYPSIRKNSRHSSNSMPSFPHSSTAVLLKRH 241
Query: 304 SG-HPDNHPRASSSPIPSDIVSDALSS 329
SG + ++ +P S+ + + SS
Sbjct: 242 SGSSGASLISSNITPSSSNSEAMSTSS 268
>gnl|CDD|188694 cd08740, RGS_RGS11, Regulator of G protein signaling (RGS) domain
found in the RGS11 protein. The RGS (Regulator of
G-protein Signaling) domain is an essential part of the
RGS11 protein, a member of R7 subfamily of the RGS
protein family. RGS is a diverse group of
multifunctional proteins that regulate cellular
signaling events downstream of G-protein coupled
receptors (GPCRs). As a major G-protein regulator, RGS
domain containing proteins are involved in many crucial
cellular processes such as regulation of intracellular
trafficking, glial differentiation, embryonic axis
formation, skeletal and muscle development, and cell
migration during early embryogenesis. Other members of
the R7 subfamily (Neuronal RGS) include: RGS6, RGS7, and
RGS9, all of which are expressed predominantly in the
nervous system, form an obligatory complex with
G-beta-5, and play important roles in the regulation of
crucial neuronal processes such as vision and motor
control. Additionally they have been implicated in many
neurological conditions such as anxiety, schizophrenia,
and drug dependence. RGS11 is expressed exclusively in
retinal ON-bipolar neurons in which it forms complexes
with G-beta-5 and R7AP (RGS7 anchor protein ) and
plays crucial roles in processing the light responses of
retinal neurons.
Length = 126
Score = 46.8 bits (111), Expect = 2e-06
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 49 WAKSFNNLLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKKQTNQDQINLIVKCIYRRY 108
W SF LLNDP G F +L E ++ L FW ACE L + Q +I +V +Y+++
Sbjct: 6 WGFSFRELLNDPVGRKEFLDFLEKEFSAENLSFWEACEEL-RYGEQSKIPELVDSVYQQF 64
Query: 109 F 109
Sbjct: 65 L 65
>gnl|CDD|188678 cd08723, RGS_RGS21, Regulator of G protein signaling (RGS) domain
found in the RGS21 protein. The RGS (Regulator of
G-protein Signaling) domain is an essential part RGS21
protein, a member of RGS protein family. They are a
diverse group of multifunctional proteins that regulate
cellular signaling events downstream of G-protein
coupled receptors (GPCRs). RGS proteins play critical
regulatory roles as GTPase activating proteins (GAPs) of
the heterotrimeric G-protein G-alpha-subunits. As a
major G-protein regulator, RGS domain containing
proteins are involved in many crucial cellular
processes. RGS proteins regulate many aspects of
embryonic development such as glial differentiation,
embryonic axis formation, skeletal and muscle
development, cell migration during early embryogenesis,
apoptosis, and cell proliferation, as well as modulation
of cardiac development. RGS21 is a member of the R4/RGS
subfamily and its mRNA was detected only in sensory
taste cells that express sweet taste receptors and the
taste G-alpha subunit, gustducin, suggesting a potential
role in regulating taste transduction.
Length = 111
Score = 46.2 bits (109), Expect = 2e-06
Identities = 21/55 (38%), Positives = 30/55 (54%)
Query: 56 LLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKKQTNQDQINLIVKCIYRRYFK 110
LL + GL FR +L SE + +EFW ACE KK + +I L + IY + +
Sbjct: 1 LLANQAGLDAFRTFLKSEFSEENVEFWLACEDFKKTKSSTEIALKAQMIYSEFIQ 55
>gnl|CDD|188666 cd08711, RGS_RGS8, Regulator of G protein signaling (RGS) domain
found in the RGS8 protein. The RGS (Regulator of
G-protein Signaling) domain is an essential part of the
RGS8 protein. RGS8 is a member of R4/RGS subfamily of
RGS family, a diverse group of multifunctional proteins
that regulate cellular signaling events downstream of
G-protein coupled receptors (GPCRs). RGS proteins play
critical regulatory roles as GTPase activating proteins
(GAPs) of the heterotrimeric G-protein G-alpha subunits.
The RGS domain controls G-protein signaling by
accelerating the GTPase activity of the G-alpha subunit
which leads to G protein deactivation and promotes
desensitization. As a major G-protein regulator, RGS
domain containing proteins are involved in many crucial
cellular processes such as regulation of intracellular
trafficking, glial differentiation, embryonic axis
formation, skeletal and muscle development, and cell
migration during early embryogenesis. RGS8 is involved
in G-protein-gated potassium channels regulation and
predominantly expressed in the brain. RGS8 also is
selectively expressed in the hematopoietic system (NK
cells).
Length = 125
Score = 45.5 bits (107), Expect = 3e-06
Identities = 21/60 (35%), Positives = 32/60 (53%)
Query: 49 WAKSFNNLLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKKQTNQDQINLIVKCIYRRY 108
WA SF+ LL+ G+ FR +L +E + LEFW ACE KK + ++ I+ +
Sbjct: 8 WADSFDVLLSHKYGVAAFRAFLKTEFSEENLEFWLACEEFKKTRSTAKLVSKAHRIFEEF 67
>gnl|CDD|188695 cd08741, RGS_RGS10, Regulator of G protein signaling (RGS) domain
found in the RGS10 protein. RGS (Regulator of G-protein
Signaling) domain is an essential part of the RGS10
protein. RGS10 is a member of the RA/RGS subfamily of
RGS proteins family, a diverse group of multifunctional
proteins that regulate cellular signaling events
downstream of G-protein coupled receptors (GPCRs). As a
major G-protein regulator, RGS domain containing
proteins are involved in many crucial cellular processes
such as regulation of intracellular trafficking, glial
differentiation, embryonic axis formation, skeletal and
muscle development, and cell migration during early
embryogenesis. RGS10 belong to the R12 RGS subfamily,
which includes RGS12 and RGS14, all of which are highly
selective for G-alpha-i1 over G-alpha-q. RGS10 exists in
2 splice isoforms. RGS10A is specifically expressed in
osteoclasts and is a key component in the RANKL
signaling mechanism for osteoclast differentiation,
whereas RGS10B expressed in brain and in immune tissues
and has been implicated in diverse processes including:
promoting of dopaminergic neuron survival via
regulation of the microglial inflammatory response,
modulation of presynaptic and postsynaptic G-protein
signalling, as well as a possible role in regulation of
gene expression.
Length = 113
Score = 44.6 bits (105), Expect = 5e-06
Identities = 22/57 (38%), Positives = 31/57 (54%)
Query: 55 NLLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKKQTNQDQINLIVKCIYRRYFKD 111
NLL DPEG+ FR++L E + + FW ACE KK ++ Q+ K IY +
Sbjct: 3 NLLEDPEGVKRFREFLKKEFSEENVLFWLACEDFKKMQDKTQMQEKAKEIYMTFLSS 59
>gnl|CDD|188661 cd08706, RGS_R12-like, Regulator of G protein signaling (RGS)
domain found in the R12 subfamily of proteins. The RGS
(Regulator of G-protein Signaling) domain is an
essential part of the R12 (Neuronal RGS) protein
subfamily of the RGS protein family, a diverse group of
multifunctional proteins that regulate cellular
signaling events downstream of G-protein coupled
receptors (GPCRs). RGS proteins play a critical
regulatory role as GTPase activating proteins (GAPs) of
the heterotrimeric G-protein G-alpha-subunits.
Deactivation of G-protein signaling, controlled by RGS
domain, accelerates GTPase activity of the alpha subunit
by hydrolysis of GTP to GDP that results in
reassociation of the alpha-subunit with the
beta-gamma-dimer and thereby inhibition of downstream
activity. As a major G-protein regulator, RGS domain
containing proteins are involved in many crucial
cellular processes such as regulation of intracellular
trafficking, glial differentiation, embryonic axis
formation, skeletal and muscle development, and cell
migration during early embryogenesis. The R12 RGS
subfamily includes RGS10, RGS12 and RGS14 all of which
are highly selective for G-alpha-i1 over G-alpha-q.
Length = 113
Score = 44.2 bits (105), Expect = 7e-06
Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 9/100 (9%)
Query: 53 FNNLLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKKQTNQDQINLIVKCIYRRYFKDS 112
F LL DP G+ F ++L E + + FW ACE KK ++ Q+ + IY +
Sbjct: 1 FERLLQDPVGVKYFTEFLKKEFSEENILFWQACEKFKKIPDKKQLVQEAREIYDTF---- 56
Query: 113 RLGLSEECLSSVLED--IRAASRTSPNLSSRMFAESQLEV 150
LS + S V D + A MF + QL++
Sbjct: 57 ---LSSKASSPVNIDSQAQLAEEMLEEPHPDMFQKQQLQI 93
>gnl|CDD|188670 cd08715, RGS_RGS1, Regulator of G protein signaling (RGS) domain
found in the RGS1 protein. The RGS (Regulator of
G-protein Signaling) domain is an essential part of the
RGS1 protein. RGS1 is a member of the R4/RGS subfamily
of the RGS family, a diverse group of multifunctional
proteins that regulate cellular signaling events
downstream of G-protein coupled receptors (GPCRs). RGS
proteins play critical regulatory roles as GTPase
activating proteins (GAPs) of the heterotrimeric
G-protein G-alpha subunits. The RGS domain controls
G-protein signaling by accelerating the GTPase activity
of the G-alpha subunit which leads to G protein
deactivation and promotes desensitization. As a major
G-protein regulator, RGS domain containing proteins are
involved in many crucial cellular processes such as
regulation of intracellular trafficking, glial
differentiation, embryonic axis formation, skeletal and
muscle development, and cell migration during early
embryogenesis. RGS 1 is expressed predominantly in
hematopoietic compartments, including T and B
lymphocytes, and may play a major role in
chemokine-mediated homing of lymphocytes to secondary
lymphoid organs. In addition, RGS1 interacts with
calmodulin and 14-3-3 protein outside of the GPCR
pathway.
Length = 114
Score = 44.2 bits (104), Expect = 8e-06
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 56 LLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKKQTNQDQINLIVKCIYRRYFKDS--- 112
LL G ++FR +L SE + +EFW ACE KK T D + + IY+ + +
Sbjct: 4 LLASQTGQNVFRSFLKSEFSEENIEFWLACEDYKK-TESDLLPCKAEEIYKEFVQSDAAK 62
Query: 113 RLGLSEECLSSVLEDIRAASRTSPNLSSRM 142
++ + S + I+A + T + + ++
Sbjct: 63 QINIDFRTRESTAKKIKAPTPTCFDEAQKV 92
>gnl|CDD|188664 cd08709, RGS_RGS2, Regulator of G protein signaling (RGS) domain
found in the RGS2 protein. The RGS (Regulator of
G-protein Signaling) domain is an essential part of the
RGS2 protein. RGS2 is a member of R4/RGS subfamily of
RGS family, a diverse group of multifunctional proteins
that regulate cellular signaling events downstream of
G-protein coupled receptors (GPCRs). RGS proteins play
critical regulatory roles as GTPase activating proteins
(GAPs) of the heterotrimeric G-protein G-alpha-subunits.
The RGS domain controls G-protein signaling by
accelerating the GTPase activity of the G- alpha subunit
which leads to G protein deactivation and promotes
desensitization. As a major G-protein regulator, RGS
domain containing proteins are involved in many crucial
cellular processes such as regulation of intracellular
trafficking, glial differentiation, embryonic axis
formation, skeletal and muscle development, and cell
migration during early embryogenesis. RGS2 plays
important roles in the regulation of blood pressure and
the pathogenesis of human hypertension, as well as in
bone formation in osteoblasts. Outside of the GPCR
pathway RGS2 interacts with calmodulin, beta- COP,
tubulin, PKG1-alpha, and TRPV6.
Length = 114
Score = 43.9 bits (103), Expect = 1e-05
Identities = 20/58 (34%), Positives = 30/58 (51%)
Query: 53 FNNLLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKKQTNQDQINLIVKCIYRRYFK 110
F+ LL G+ FR +L SE + +EFW ACE KK + ++ K IY + +
Sbjct: 1 FDELLASKYGVAAFRAFLKSEFSEENIEFWLACEDFKKTKSPQKLTSKAKKIYTDFIE 58
>gnl|CDD|188691 cd08737, RGS_RGS6, Regulator of G protein signaling (RGS) domain
found in the RGS6 protein. The RGS (Regulator of
G-protein Signaling) domain is an essential part of the
RGS6 protein, a member of R7 subfamily of the RGS
protein family. RGS is a diverse group of
multifunctional proteins that regulate cellular
signaling events downstream of G-protein coupled
receptors (GPCRs). Other members of the R7 subfamily
(Neuronal RGS) include: RGS7, RGS9, and RGS11, all of
which are expressed predominantly in the nervous system,
form an obligatory complex with G-beta-5, and play
important roles in the regulation of crucial neuronal
processes such as vision and motor control.
Additionally they have been implicated in many
neurological conditions such as anxiety, schizophrenia,
and drug dependence. RGS6 exists in multiple splice
isoforms with identical RGS domains, but possess
complete or incomplete GGL domains and distinct N- and
C-terminal domains. RGS6 interacts with SCG10, a
neuronal growth-associated protein and therefore
regulates neuronal differentiation. Another RGS6-binding
protein is DMAP1, a component of the Dnmt1 complex
involved in repression of newly replicated genes.
Mutations of a critical residue required for interaction
of RGS6 protein with G proteins did not affect the
ability of RGS6 to interact with both SCG10 and DMAP1.
As a major G-protein regulator, RGS domain containing
proteins are involved in many crucial cellular processes
such as regulation of intracellular trafficking, glial
differentiation, embryonic axis formation, skeletal and
muscle development, and cell migration during early
embryogenesis.
Length = 125
Score = 44.2 bits (104), Expect = 1e-05
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 49 WAKSFNNLLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKKQTNQDQINLIVKCIYRRY 108
W S + +L DP G F ++L SE S+ L FW A + LKKQ QD + V+ I++ +
Sbjct: 6 WGFSLDEVLKDPVGRDQFLRFLESEFSSENLRFWLAVQDLKKQPLQD-VAKRVEEIWQEF 64
Query: 109 FKDSRLGLSEECLSSVLEDIRAASRTSPNL 138
L+ S++ D + +TS N+
Sbjct: 65 -------LAPGAPSAINLDSHSYEKTSQNV 87
>gnl|CDD|188693 cd08739, RGS_RGS9, Regulator of G protein signaling (RGS) domain
found in the RGS9 protein. The RGS (Regulator of
G-protein Signaling) domain is an essential part of the
RGS9 protein, a member of R7 subfamily of the RGS
protein family. RGS is a diverse group of
multifunctional proteins that regulate cellular
signaling events downstream of G-protein coupled
receptors (GPCRs). As a major G-protein regulator, RGS
domain containing proteins are involved in many crucial
cellular processes such as regulation of intracellular
trafficking, glial differentiation, embryonic axis
formation, skeletal and muscle development, and cell
migration during early embryogenesis. Other members of
the R7 subfamily (Neuronal RGS) include: RGS6, RGS7,
and RGS11, all of which are expressed predominantly in
the nervous system, form an obligatory complex with
G-beta-5, and play important roles in the regulation of
crucial neuronal processes such as vision and motor
control. Additionally they have been implicated in
many neurological conditions such as anxiety,
schizophrenia, and drug dependence. RGS9 forms
constitutive complexes with G-beta-5 subunit and
controls such fundamental functions as vision and
behavior. RGS9 exists in two splice isoforms: RGS9-1
which regulates phototransduction in rods and cones and
RGS9-2 which regulates dopamine and opioid signaling in
the basal ganglia. In addition, RGS9 was found to bind
many other proteins outside of G protein signaling
pathways including: mu-opioid receptor, beta-arrestin,
alpha-actinin-2, NMDAR, polycystin, spinophilin, and
guanylyl cyclase, among others.
Length = 121
Score = 43.9 bits (103), Expect = 1e-05
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 49 WAKSFNNLLNDPEGLHLFRKYLASENQSDLLEFWFACEGLK 89
WA +F+ L+ DP+G F+ +L E + L FW ACE LK
Sbjct: 5 WAFNFSELIRDPKGRQSFQLFLKKEFSGENLGFWEACEDLK 45
>gnl|CDD|188697 cd08743, RGS_RGS14, Regulator of G protein signaling (RGS) domain
found in the RGS14 protein. RGS (Regulator of G-protein
Signaling) domain is an essential part of the RGS14
protein. RGS14 is a member of the RA/RGS subfamily of
RGS proteins family, a diverse group of multifunctional
proteins that regulate cellular signaling events
downstream of G-protein coupled receptors (GPCRs). As a
major G-protein regulator, RGS domain containing
proteins are involved in many crucial cellular processes
such as regulation of intracellular trafficking, glial
differentiation, embryonic axis formation, skeletal and
muscle development, and cell migration during early
embryogenesis. RGS14 belong to the R12 RGS subfamily,
which includes RGS10 and RGS12, all of which are highly
selective for G-alpha-i1 over G-alpha-q. RGS14 binds
and regulates the subcellular localization and
activities of H-Ras and Raf kinases in cells and
thereby integrates G protein and Ras/Raf signaling
pathways.
Length = 129
Score = 43.9 bits (103), Expect = 2e-05
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 49 WAKSFNNLLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKKQTNQDQINLI--VKCIYR 106
WA SF LL DP G+ F ++L E ++ + FW ACE ++ D L + IY
Sbjct: 7 WAVSFERLLQDPLGVEYFTEFLKKEFSAENVNFWKACERFQQIPASDTQQLAQEARKIYN 66
Query: 107 RYFKDSRL 114
+ S
Sbjct: 67 EFLSSSSQ 74
>gnl|CDD|188672 cd08717, RGS_RGS5, Regulator of G protein signaling (RGS) domain
found in the RGS5 protein. The RGS (Regulator of
G-protein Signaling) domain is an essential part of the
RGS5 protein. RGS5 is member of the R4/RGS subfamily of
the RGS family, a diverse group of multifunctional
proteins that regulate cellular signaling events
downstream of G-protein coupled receptors (GPCRs). RGS
proteins play critical regulatory roles as GTPase
activating proteins (GAPs) of the heterotrimeric
G-protein G-alpha subunits. The RGS domain controls
G-protein signaling by accelerating the GTPase activity
of the G-alpha subunit which leads to G protein
deactivation and promotes desensitization. As a major
G-protein regulator, RGS domain containing proteins are
involved in many crucial cellular processes such as
regulation of intracellular trafficking, glial
differentiation, embryonic axis formation, skeletal and
muscle development, and cell migration during early
embryogenesis. Two splice isoforms of RGS5 has been
found: RGS5L (long) which is expressed in smooth muscle
cells (pericytes) and heart and RGS5S (short) which is
highly expressed in the ciliary body of the eye, kidney,
brain, spleen, skeletal muscle, and small intestine.
Outside of the GPCR pathway, RGS5 interacts with the
14-3-3 protein.
Length = 114
Score = 43.4 bits (102), Expect = 2e-05
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Query: 56 LLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKKQTNQDQINLIVKCIYRRYFKDSRLG 115
LL + GL F+ +L SE + +EFW ACE KK + ++ K IY + +
Sbjct: 4 LLQNSYGLASFKSFLKSEFSEENIEFWEACEDYKKTKSPLKMATKAKKIYEEFIQTE--A 61
Query: 116 LSEECLSSVLEDIRAASRTSPNLSSRMFAESQL 148
E + +D+ + P+ SS A+ ++
Sbjct: 62 PKEVNIDHFTKDVTMKNLVEPSSSSFDLAQKRI 94
>gnl|CDD|188668 cd08713, RGS_RGS3, Regulator of G protein signaling (RGS) domain
found in the RGS3 protein. The RGS (Regulator of
G-protein Signaling) domain is an essential part of the
RGS3 protein. RGS3 is a member of the R4/RGS subfamily
of the RGS family, a diverse group of multifunctional
proteins that regulate cellular signaling events
downstream of G-protein coupled receptors (GPCRs). As a
major G-protein regulator, RGS domain containing
proteins are involved in many crucial cellular processes
such as regulation of intracellular trafficking, glial
differentiation, embryonic axis formation, skeletal and
muscle development, and cell migration during early
embryogenesis. RGS proteins play critical regulatory
roles as GTPase activating proteins (GAPs) of the
heterotrimeric G-protein G-alpha subunits. The RGS
domain controls G-protein signaling by accelerating the
GTPase activity of the G-alpha subunit which leads to G
protein deactivation and promotes desensitization. As a
major G-protein regulator, RGS domain containing
proteins are involved in many crucial cellular
processes. RGS3 induces apoptosis when overexpressed and
is involved in cell migration through interaction with
the Ephrin receptor. RGS3 exits as several splice
isoforms and interacts with neuroligin, estrogen
receptor-alpha, and 14-3-3 outside of the GPCR pathways.
Length = 114
Score = 42.5 bits (100), Expect = 3e-05
Identities = 21/53 (39%), Positives = 29/53 (54%)
Query: 56 LLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKKQTNQDQINLIVKCIYRRY 108
LL GL +FR +L +E + LEFW ACE KK +Q ++ K I+ Y
Sbjct: 4 LLLHKYGLAVFRAFLQTEFSEENLEFWLACEEYKKIKSQSKMASRAKKIFAEY 56
>gnl|CDD|188692 cd08738, RGS_RGS7, Regulator of G protein signaling (RGS) domain
found in the RGS7 protein. The RGS (Regulator of
G-protein Signaling) domain is an essential part of the
RGS7 protein, a member of R7 subfamily of the RGS
protein family. RGS is a diverse group of
multifunctional proteins that regulate cellular
signaling events downstream of G-protein coupled
receptors (GPCRs). As a major G-protein regulator, RGS
domain containing proteins are involved in many crucial
cellular processes such as regulation of intracellular
trafficking, glial differentiation, embryonic axis
formation, skeletal and muscle development, and cell
migration during early embryogenesis. As a major
G-protein regulator, RGS domain containing proteins are
involved in many crucial cellular processes such as
regulation of intracellular trafficking, glial
differentiation, embryonic axis formation, skeletal and
muscle development, and cell migration during early
embryogenesis. Other members of the R7 subfamily
(Neuronal RGS) include: RGS6, RGS9, and RGS11, all of
which are expressed predominantly in the nervous
system, form an obligatory complex with G-beta-5, and
play important roles in the regulation of crucial
neuronal processes such as vision and motor control.
Additionally they have been implicated in many
neurological conditions such as anxiety, schizophrenia,
and drug dependence. R7 RGS proteins are key modulators
of the pharmacological effects of drugs involved in the
development of tolerance and addiction. In addition,
RGS7 was found to bind a component of the synaptic
fusion complex, snapin, and some other proteins outside
of G protein signaling pathways.
Length = 121
Score = 38.5 bits (89), Expect = 0.001
Identities = 19/43 (44%), Positives = 23/43 (53%)
Query: 49 WAKSFNNLLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKKQ 91
W + L DP G F K+L SE S+ L FW A E LKK+
Sbjct: 5 WGFGMDEALKDPVGREQFLKFLESEFSSENLRFWLAVEDLKKR 47
>gnl|CDD|188665 cd08710, RGS_RGS16, Regulator of G protein signaling (RGS) domain
found in the RGS16 protein. The RGS (Regulator of
G-protein Signaling) domain is an essential part of the
RGS16 protein. RGS16 is a member of the RGS protein
family, a diverse group of multifunctional proteins
that regulate cellular signaling events downstream of
G-protein coupled receptors (GPCRs). RGS proteins play
critical regulatory roles as GTPase activating proteins
(GAPs) of the heterotrimeric G-protein G-alpha
subunits. The RGS domain controls G-protein signaling
by accelerating the GTPase activity of the G-alpha
subunit which leads to G protein deactivation and
promotes desensitization. As a major G-protein
regulator, RGS domain containing proteins are involved
in many crucial cellular processes such as regulation
of intracellular trafficking, glial differentiation,
embryonic axis formation, skeletal and muscle
development, and cell migration during early
embryogenesis. RGS16 is a member of the R4/RGS
subfamily and interacts with neuronal G-alpha0. RGS16
expression is upregulated by IL-17 of the NF-kappaB
signaling pathway in autoimmune B cells.
Length = 114
Score = 37.4 bits (86), Expect = 0.003
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 53 FNNLLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKK 90
F+ LLN G+ F +L +E + LEFW ACE KK
Sbjct: 1 FDLLLNSKNGVAAFHAFLKTEFSEENLEFWLACEEFKK 38
>gnl|CDD|188671 cd08716, RGS_RGS13, Regulator of G protein signaling (RGS) domain
found in the RGS13 protein. The RGS (Regulator of
G-protein Signaling) domain is an essential part of the
RGS13 protein. RGS13 is member of the R4/RGS subfamily
of the RGS family, a diverse group of multifunctional
proteins that regulate cellular signaling events
downstream of G-protein coupled receptors (GPCRs). RGS
proteins play critical regulatory roles as GTPase
activating proteins (GAPs) of the heterotrimeric
G-protein G-alpha subunits. The RGS domain controls
G-protein signaling by accelerating the GTPase activity
of the G-alpha subunit which leads to G protein
deactivation and promotes desensitization. As a major
G-protein regulator, RGS domain containing proteins are
involved in many crucial cellular processes such as
regulation of intracellular trafficking, glial
differentiation, embryonic axis formation, skeletal and
muscle development, and cell migration during early
embryogenesis. RGS13 is predominantly expressed in T
and B lymphocytes and in mast cells, and plays a role in
adaptive immune responses. RGS13 also found in Rgs13,
which is also expressed in dendritic cells and in
neuroendocrine cells of the thymus, gastrointestinal,
and respiratory tracts. Outside of the GPCR pathway,
RGS5 interacts with the PIP3 protein.
Length = 114
Score = 36.4 bits (84), Expect = 0.005
Identities = 17/58 (29%), Positives = 31/58 (53%)
Query: 53 FNNLLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKKQTNQDQINLIVKCIYRRYFK 110
F NL+ G ++ YL +E+ + +EFW ACE KK +Q + + + ++ Y +
Sbjct: 1 FENLMATKYGPIIYATYLKTEHSDENIEFWLACETYKKIASQRKRISMARKLFASYIQ 58
>gnl|CDD|188696 cd08742, RGS_RGS12, Regulator of G protein signaling (RGS) domain
found in the RGS12 protein. RGS (Regulator of G-protein
Signaling) domain is an essential part of the RGS12
protein. RGS12 is a member of the RA/RGS subfamily of
RGS proteins family, a diverse group of multifunctional
proteins that regulate cellular signaling events
downstream of G-protein coupled receptors (GPCRs). As a
major G-protein regulator, RGS domain containing
proteins are involved in many crucial cellular processes
such as regulation of intracellular trafficking, glial
differentiation, embryonic axis formation, skeletal and
muscle development, and cell migration during early
embryogenesis. RGS12 belong to the R12 RGS subfamily,
which includes RGS10 and RGS14, all of which are highly
selective for G-alpha-i1 over G-alpha-q. RGS12 exist in
multiple splice variants: RGS12s (short) contains the
core RGS/RBD/GoLoco domains, while RGS12L (long) has
additional N-terminal PDZ and PTB domains. RGS12 splice
variants show distinct expression patterns, suggesting
that they have discrete functions during mouse
embryogenesis. RGS12 also may play a critical role in
coordinating Ras-dependent signals that are required for
promoting and maintaining neuronal differentiation.
Length = 115
Score = 35.0 bits (80), Expect = 0.014
Identities = 23/101 (22%), Positives = 46/101 (45%), Gaps = 9/101 (8%)
Query: 53 FNNLLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKK--QTNQDQINLIVKCIYRRYF- 109
F LL DP G+ F ++L E + + FW ACE ++ +++ + I+ ++
Sbjct: 1 FERLLQDPVGVRYFSEFLRKEFSEENILFWQACEYFNHVPAHDKKELSYRAREIFSKFLC 60
Query: 110 KDSRLGLSEECLSSVLEDIRAASRTSPNLSSRMFAESQLEV 150
+ ++ + + + +DI A MF E QL++
Sbjct: 61 SKATTPVNIDSQAQLADDILNAPHPD------MFKEQQLQI 95
>gnl|CDD|188684 cd08729, RGS_PX, Regulator of G protein signaling domain. These
uncharacterized RGS-like domains are found in proteins
that also contain one or more PX domains. The RGS
domain is an essential part of the Regulator of
G-protein Signaling (RGS) protein family, a diverse
group of multifunctional proteins that regulate
cellular signaling events downstream of G-protein
coupled receptors (GPCRs). RGS proteins play critical
regulatory role as GTPase activating proteins (GAPs) of
the heterotrimeric G-protein G-alpha-subunits. As a
major G-protein regulator, the RGS domain containing
proteins that are involves in many crucial cellular
processes. RGS proteins regulate intracellular
trafficking and provide vital support for signal
transduction. RGS proteins play critical regulatory
role as GTPase activating proteins (GAPs) of the
heterotrimeric G-protein G-alpha-subunits. RGS proteins
regulate many aspects of embryonic development such as
glial differentiation, embryonic axis formation,
skeletal and muscle development, cell migration during
early embryogenesis, as well as apoptosis, cell
proliferation, and modulation of cardiac development.
Several RGS proteins can fine-tune immune responses,
others RGS proteins play important role in neuronal
signals modulation. Some RGS proteins are the principal
elements needed for proper vision.
Length = 136
Score = 34.8 bits (80), Expect = 0.022
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 57 LNDPEGLHLFRKYLASENQSDLLEFWFACEGLK 89
L DP L F +++ N+S L++FW EG K
Sbjct: 1 LRDPSSLSYFMEFMDRRNRSQLVQFWLVVEGFK 33
>gnl|CDD|188683 cd08728, RGS-like_2, Uncharacterized Regulator of G protein
Signaling (RGS) domain subfamily, child 2. These
uncharacterized RGS-like domains consists largely of
hypothetical proteins. The RGS domain is an essential
part of the Regulator of G-protein Signaling (RGS)
protein family, a diverse group of multifunctional
proteins that regulate cellular signaling events
downstream of G-protein coupled receptors (GPCRs). RGS
proteins regulate many aspects of embryonic development
such as glial differentiation, embryonic axis formation,
skeletal and muscle development, cell migration during
early embryogenesis, as well as apoptosis, cell
proliferation, and modulation of cardiac development.
Several RGS proteins can fine-tune immune responses,
while others play an important role in neuronal signal
modulation. Some RGS proteins are the principal elements
needed for proper vision.
Length = 179
Score = 34.8 bits (80), Expect = 0.040
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 9/77 (11%)
Query: 57 LNDPEGLHLFRKYLASENQSDLLEFWFACEGLKKQTN----QDQINLIVKCIYRRYF-KD 111
L + L F+++L S L FW A E ++ + N + +I LIVK RYF
Sbjct: 1 LRNHTHLEYFKRFLKSRGSDGPLLFWIAVEKMRVEENEKEQKAKIELIVK----RYFHGQ 56
Query: 112 SRLGLSEECLSSVLEDI 128
G+ +C + ++ +I
Sbjct: 57 DPPGVLLQCEAIIIREI 73
>gnl|CDD|188675 cd08720, RGS_SNX25, Regulator of G protein signaling (RGS) domain
found in the Sorting Nexin 25 (SNX25) protein. The RGS
(Regulator of G-protein Signaling) domain is an
essential part of the SNX25 (Sorting Nexin 25) protein,
a member of the RGS protein family. They are a diverse
group of multifunctional proteins that regulate cellular
signaling events downstream of G-protein coupled
receptors (GPCRs). RGS proteins regulate many aspects of
embryonic development such as glial differentiation,
embryonic axis formation, skeletal and muscle
development, cell migration during early embryogenesis,
as well as apoptosis, cell proliferation, and modulation
of cardiac development. SNX25 is a member of the
Dopamine receptors (DAR) signalplex and regulates the
trafficking of D1 and D2 DARs.
Length = 110
Score = 33.5 bits (77), Expect = 0.041
Identities = 11/57 (19%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 56 LLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKKQTNQDQINLIVKCIYRRYFKDS 112
+L + G ++L + L+ FW A E L + N+ + + + I+ + +
Sbjct: 1 ILANVFGRKYLSQFLERMDSQALIGFWEAVEEL-RSANKSEWHQLGAEIFYTFIVEP 56
>gnl|CDD|188676 cd08721, RGS_AKAP2_2, Regulator of G protein signaling (RGS) domain
2 found in the A-kinase anchoring protein, D-AKAP2. The
RGS (Regulator of G-protein Signaling) domain is an
essential part of the D-AKAP2 (A-kinase anchoring
protein), a member of the RGS protein family. They are a
diverse group of multifunctional proteins that regulate
cellular signaling events downstream of G-protein
coupled receptors (GPCRs). RGS proteins regulate many
aspects of embryonic development such as glial
differentiation, embryonic axis formation, skeletal and
muscle development, cell migration during early
embryogenesis, as well as apoptosis, cell proliferation,
and modulation of cardiac development. D-AKAP2 contains
two RGS domains which play an important role in
spatiotemporal localization of cAMP-dependent PKA
(cyclic AMP-dependent protein kinase) that regulates
many different signaling pathways by phosphorylation of
target proteins. This cd contains the second RGS domain.
Length = 121
Score = 33.5 bits (77), Expect = 0.061
Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 17/95 (17%)
Query: 56 LLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKKQ--TNQDQIN--------LIVKCIY 105
L + L F +Y+ E +LL+FW A + + Q + Q + +I IY
Sbjct: 2 LYCES-ALFYFMEYMEQEGARNLLQFWLAADNFQSQLAAKEGQYDGQQAQNDAMI---IY 57
Query: 106 RRYFK---DSRLGLSEECLSSVLEDIRAASRTSPN 137
+YF LG ++ V +I P+
Sbjct: 58 DKYFSLQATEPLGFDDKTRLEVESNICREGGPLPS 92
>gnl|CDD|188685 cd08730, RGS-like_3, Uncharacterized Regulator of G protein
Signaling (RGS) domain subfamily, child 3. These
uncharacterized RGS-like domains consists largely of
hypothetical proteins. The RGS domain is an essential
part of the Regulator of G-protein Signaling (RGS)
protein family, a diverse group of multifunctional
proteins that regulate cellular signaling events
downstream of G-protein coupled receptors (GPCRs). RGS
proteins play critical regulatory role as GTPase
activating proteins (GAPs) of the heterotrimeric
G-protein G-alpha-subunits. As a major G-protein
regulator, the RGS domain containing proteins that are
involved in many crucial cellular processes. RGS
proteins play critical regulatory role as GTPase
activating proteins (GAPs) of the heterotrimeric
G-protein G-alpha-subunits. RGS proteins regulate many
aspects of embryonic development such as glial
differentiation, embryonic axis formation, skeletal and
muscle development, cell migration during early
embryogenesis, as well as apoptosis, cell proliferation,
and modulation of cardiac development. Several RGS
proteins can fine-tune immune responses, while others
play an important role in neuronal signal modulation.
Some RGS proteins are the principal elements needed for
proper vision.
Length = 165
Score = 33.1 bits (75), Expect = 0.11
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 62 GLHLFRKYLASENQSDLLEFWFACEGLKKQTNQDQIN--LIVKCIYRRYFK 110
G+ FR++LA D L+FW E ++ +I + + +Y
Sbjct: 7 GMRRFRQFLAGTLGEDYLKFWLDVEMYRRDYKFGEIKRLDFFRSVVTKYLL 57
>gnl|CDD|240323 PTZ00233, PTZ00233, variable surface protein Vir18; Provisional.
Length = 509
Score = 31.9 bits (72), Expect = 0.63
Identities = 25/122 (20%), Positives = 44/122 (36%), Gaps = 6/122 (4%)
Query: 157 VVCSGSTTGSSSGSHAGAVSQASQSTSQPDPPQPRQSSASDNQYPHSYGNQGIQHTSSAA 216
VV + S S G + QS Q S G+ I+ S+A
Sbjct: 175 VVLQPQSDSMPSPSSIGTEDKEPQSIVNHHSTTSGMGETQTQQLNAS-GDSPIRELDSSA 233
Query: 217 SDASSHSTRNQTSSNMHQNMHQNMHSSGHQSNMHH-----SSGPNMHDSSGHQSMHQSNM 271
D S + S + +N+ +S Q+N+ ++ P DS+G+ Q++
Sbjct: 234 GDPPSECVSGKESDLTCTSTGENLDTSLFQTNLSSGKTLDANHPETQDSAGNVIEVQTHG 293
Query: 272 HQ 273
+
Sbjct: 294 DK 295
>gnl|CDD|236641 PRK10019, PRK10019, nickel/cobalt efflux protein RcnA; Provisional.
Length = 279
Score = 31.3 bits (71), Expect = 0.71
Identities = 11/53 (20%), Positives = 22/53 (41%)
Query: 233 HQNMHQNMHSSGHQSNMHHSSGPNMHDSSGHQSMHQSNMHQSGHQSNMHQNMD 285
+ + H + H H HH G + H G + + H+ H +++ + D
Sbjct: 119 NMHHHDHDHDHDHDHEHHHDHGHHHHHEHGATAEEYQDAHERAHANDIKRRFD 171
>gnl|CDD|227091 COG4748, COG4748, Uncharacterized conserved protein [Function
unknown].
Length = 365
Score = 31.7 bits (72), Expect = 0.76
Identities = 20/93 (21%), Positives = 44/93 (47%), Gaps = 10/93 (10%)
Query: 66 FRKYLASENQS---DLLEFWFA--CEGLKKQTNQDQINLIVKCIYRRYFKD---SRLGLS 117
+ YLA E + + ++F+ A G K + ++ IVK + ++ D RL +
Sbjct: 177 IKAYLAKETNNPSVEFVKFFAAKVYTGFKTTSVDEKFTDIVKNAFSQFINDRVNDRLKSA 236
Query: 118 EECLSSVLEDIRAASRTSPNLSSRMFAESQLEV 150
++ +V I+ + N+ ++F ES+ ++
Sbjct: 237 KKSEDTVDSGIKDNNIKDENV--KIFEESESDI 267
>gnl|CDD|215814 pfam00242, DNA_pol_viral_N, DNA polymerase (viral) N-terminal
domain.
Length = 379
Score = 30.6 bits (69), Expect = 1.8
Identities = 24/122 (19%), Positives = 37/122 (30%), Gaps = 17/122 (13%)
Query: 159 CSGSTTGSSSGSHAGAVSQASQSTSQPDPPQPRQSSASDNQYPHSYGNQGIQHTSSAASD 218
S + + ++ S S+S Q ++S + Q S +
Sbjct: 214 RSENRRTRNLANNTSRKSDTSRSVGPVRQSQIQRSR--LGLQANQGKLAHGQQGRSGSIR 271
Query: 219 ASSHST--RNQTSSNMHQNMHQNMHSSGHQSNMHHSSGPNMHDSSG----HQSMHQSNMH 272
HST R SSG +N SS H S+ + S+ S H
Sbjct: 272 GRKHSTTRRPFGVEP---------SSSGVTTNRASSSSSCFHQSAVRETAYSSLSTSERH 322
Query: 273 QS 274
S
Sbjct: 323 SS 324
>gnl|CDD|235026 PRK02292, PRK02292, V-type ATP synthase subunit E; Provisional.
Length = 188
Score = 29.2 bits (66), Expect = 2.4
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 121 LSSVLEDIRAASRTSPNLSSRMFAESQLEVERIIN 155
L +V+EDIR +R +S + AE+ E E II
Sbjct: 3 LETVVEDIRDEARAR---ASEIRAEADEEAEEIIA 34
>gnl|CDD|185594 PTZ00395, PTZ00395, Sec24-related protein; Provisional.
Length = 1560
Score = 30.4 bits (68), Expect = 2.5
Identities = 34/164 (20%), Positives = 56/164 (34%), Gaps = 17/164 (10%)
Query: 176 SQASQSTSQPDPPQPRQSSASDNQYPHSYGNQGIQHTSSAASDASSHSTRNQTSSNMHQN 235
+ + +S + + + N + GN + + A ++ SN N
Sbjct: 66 NHINTRSSDNNSCENANMNRDANSSSENVGNANGNNYDNRAHVGRAYGAGACEQSNQQSN 125
Query: 236 MHQN---MHSSGH----------QSNMHHSSGPNMHDSSGHQSMHQSNMHQSGHQSNMHQ 282
+ H GH + H+ + ++G HQSG S HQ
Sbjct: 126 IPIGDPVNHLRGHPNFGEPRERAEDAAPHAQHNHSGKTNGDNPPTGGQYHQSGGTSRNHQ 185
Query: 283 NMDLMSKSCPTSSSLALMAPQSGHPDNHPRASSSPIPSDIVSDA 326
MD +K+CP + P H N + IPSDI D+
Sbjct: 186 MMD-SNKNCPADALFNETNPSGEHKRN---SIDGDIPSDIYIDS 225
>gnl|CDD|227436 COG5105, MIH1, Mitotic inducer, protein phosphatase [Cell division
and chromosome partitioning].
Length = 427
Score = 29.6 bits (66), Expect = 3.0
Identities = 29/206 (14%), Positives = 55/206 (26%), Gaps = 7/206 (3%)
Query: 115 GLSEECLSSVLEDIRAASRTSP-NLSSRMFAESQLEVERIINVVVCSGSTTGSSSGSHAG 173
GL +EC + + + AS+ S +F + + + +
Sbjct: 7 GLEDECANEDVFFFQKASKKSIFGDKKNIFRNIATFFKPKAKHALADDDLINKENFAFDK 66
Query: 174 AVSQASQSTSQPDPPQPRQSSASDNQYPHSYGNQGIQHTSSA--ASDASSHSTRNQTSSN 231
++ + + P N+G T A + S+ N +S N
Sbjct: 67 RPLLSNHRSKEIAGPFLNIKQLGHRDELDEKENEGDDATLHLHFALQRMTSSSANASSDN 126
Query: 232 MHQNMHQNMHSSGHQSNMHHSSGPNMHDSSGHQSMHQSNMHQSGHQSNMHQNMDLMSKSC 291
+ + SS N+ H + S + H C
Sbjct: 127 EQCPADVDQMYIKKFYEIPWSSSENIEFED---PGHDPFVDNSDNSKMNHLRGSGKQPKC 183
Query: 292 PTSSSLALMAPQSGHPDNHPRASSSP 317
+ A+ G RA +P
Sbjct: 184 REKIAFAVWTSLQG-MRGFSRAGPAP 208
>gnl|CDD|218082 pfam04425, Bul1_N, Bul1 N terminus. This family contains the N
terminus of Saccharomyces cerevisiae Bul1. Bul1 binds
the ubiquitin ligase Rsp5, via an N terminal PPSY motif.
The complex containing Bul1 and Rsp5 is involved in
intracellular trafficking of the general amino acid
permease Gap1, degradation of Rog1 in cooperation with
Bul2 and GSK-3, and mitochondrial inheritance. Bul1 may
contain HEAT repeats.
Length = 432
Score = 29.2 bits (66), Expect = 4.1
Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 200 YPHSYGNQGIQHTSSAASDASSHSTRNQTSSNMHQNMHQNMHSSGHQSNMHHSSGPNMHD 259
+P SY + + +S + + SS +T + +S ++ +S H + N H+
Sbjct: 50 FPPSY--EEVPSSSPSPTSPSSSNTVSASSLSLESPN--TTEASNSPEETHLNIENNEHN 105
>gnl|CDD|218777 pfam05847, Baculo_LEF-3, Nucleopolyhedrovirus late expression
factor 3 (LEF-3). This family consists of LEF-3
Nucleopolyhedrovirus late expression factor 3 (LEF-3)
sequences which are known to be ssDNA-binding proteins.
Alkaline nuclease (AN) and LEF-3 may participate in
homologous recombination of the baculovirus genome in a
manner similar to that of exonuclease (Redalpha) and
DNA-binding protein (Redbeta) of the Red-mediated
homologous recombination system of bacteriophage lambda.
LEF-3 is essential for transporting the putative
baculovirus helicase protein P143 into the nucleus where
they function together during viral DNA replication.
LEF-3 and other proteins have been shown to bind to
closely linked sites on viral chromatin in vivo,
suggesting that they may form part of the baculovirus
replisome.
Length = 348
Score = 29.2 bits (66), Expect = 4.3
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 10/35 (28%)
Query: 73 ENQSDLLEFWFACEGLKKQTNQDQI-NLI-VKCIY 105
EN++DLLEF+ NQD++ NL VKC
Sbjct: 170 ENENDLLEFFHK--------NQDKLFNLYRVKCQQ 196
>gnl|CDD|227909 COG5622, COG5622, Protein required for attachment to host cells
[Cell motility and secretion].
Length = 139
Score = 28.2 bits (63), Expect = 5.0
Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 4/72 (5%)
Query: 292 PTSSSLALMAPQ--SGHPDNHPRASSSPIPSDIVSDALSSLTEDLASSLPTLHEDRYKGR 349
P L + G +H +SS+P S D+ ++ + +H ++K
Sbjct: 35 PAKLVLDIDNDHHGRGARQSHSSSSSNPDSSREEEDSFAAEIAKELNRS--VHGGKFKNL 92
Query: 350 AIVFASVSVVCL 361
I+ A ++ L
Sbjct: 93 VIIAAPRTLGEL 104
>gnl|CDD|212688 cd11738, HSPA4L_NBD, Nucleotide-binding domain of HSPA4L. Human
HSPA4L (also known as 70-kDa heat shock protein 4-like,
APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to
4q28) is expressed ubiquitously and predominantly in the
testis. It is required for normal spermatogenesis and
plays a role in osmotolerance. HSPA4L belongs to the
105/110 kDa heat shock protein (HSP105/110) subfamily of
the HSP70-like family. HSP105/110s are believed to
function generally as co-chaperones of HSP70 chaperones,
acting as nucleotide exchange factors (NEFs), to remove
ADP from their HSP70 chaperone partners during the ATP
hydrolysis cycle. HSP70 chaperones assist in protein
folding and assembly, and can direct incompetent
"client" proteins towards degradation. Like HSP70
chaperones, HSP105/110s have an N-terminal
nucleotide-binding domain (NBD) and a C-terminal
substrate-binding domain (SBD). For HSP70 chaperones,
the nucleotide sits in a deep cleft formed between the
two lobes of the NBD. The two subdomains of each lobe
change conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is also
regulated by J-domain proteins.
Length = 383
Score = 28.8 bits (64), Expect = 5.1
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Query: 73 ENQSDLLEFWFACEGLKK--QTNQDQINLIVKCIYRRYFKDSRLGLSEECLSSVLEDIRA 130
EN LL + CE LKK N + L ++C + D L +S + + E + A
Sbjct: 257 ENSRALLRLYQECEKLKKLMSANASDLPLNIEC----FMND--LDVSSKMNRAQFEQLCA 310
Query: 131 A--SRTSPNLSSRMFAESQLEVERIINVVVCSGST 163
+ +R P L + M ++ L+ E I ++ + G+T
Sbjct: 311 SLLARVEPPLKAVM-EQANLQREDIYSIEIVGGAT 344
>gnl|CDD|236513 PRK09431, asnB, asparagine synthetase B; Provisional.
Length = 554
Score = 28.7 bits (65), Expect = 6.4
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 6/38 (15%)
Query: 30 PSPS-----GGGEALSTSPPNYLEWAKSFNNLLNDPEG 62
P PS GG +++ S +EW ++F N ++DP G
Sbjct: 507 PLPSAAECVPGGPSVACSSAKAIEWDEAFKN-MDDPSG 543
>gnl|CDD|197870 smart00775, LNS2, This domain is found in Saccharomyces cerevisiae
protein SMP2, proteins with an N-terminal lipin domain
and phosphatidylinositol transfer proteins. SMP2 is
involved in plasmid maintenance and respiration. Lipin
proteins are involved in adipose tissue development and
insulin resistance.
Length = 157
Score = 27.6 bits (62), Expect = 7.7
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 380 LPPGPKLTKDSLLATARKRTMLRSKPEAF 408
LP GP L L A R ++ KPE F
Sbjct: 74 LPHGPVLLSPDRLFAALHREVISKKPEVF 102
>gnl|CDD|221143 pfam11593, Med3, Mediator complex subunit 3 fungal. Mediator is a
large complex of up to 33 proteins that is conserved
from plants to fungi to humans - the number and
representation of individual subunits varying with
species. It is arranged into four different sections, a
core, a head, a tail and a kinase-activity part, and the
number of subunits within each of these is what varies
with species. Overall, Mediator regulates the
transcriptional activity of RNA polymerase II but it
would appear that each of the four different sections
has a slightly different function. Mediator subunit
Hrs1/Med3 is a physical target for Cyc8-Tup1, a yeast
transcriptional co-repressor.
Length = 381
Score = 28.4 bits (63), Expect = 7.9
Identities = 26/146 (17%), Positives = 50/146 (34%), Gaps = 6/146 (4%)
Query: 162 STTGSSSGSHAGAVSQASQSTSQPDPPQPRQSSASDNQYPHSYGNQGIQHTSSAASDASS 221
+TTG S + A+S + +T +PR+ + P + + A + A +
Sbjct: 166 TTTGVGSAATTAAISATTATTPTTTQKKPRKPRQTKKTGPAAAAKAQASAQAQAQASAYN 225
Query: 222 HSTRNQTSSNMHQ-----NMHQNMHSSGHQSNMHHSSGPNMHDSSGHQSMHQSNMHQSGH 276
N N M S + + P +++ S ++++Q +G
Sbjct: 226 QMGSLGVPQNTSMLAQIPNPTPLMQLLNGVSPNNAMASP-LNNMSPMRNLNQMGNQNNGG 284
Query: 277 QSNMHQNMDLMSKSCPTSSSLALMAP 302
Q N M+ +S M P
Sbjct: 285 QMTPSANNGNMNNQSRENSMNQGMTP 310
>gnl|CDD|220488 pfam09950, DUF2184, Uncharacterized protein conserved in bacteria
(DUF2184). This domain, found in various hypothetical
bacterial proteins, has no known function.
Length = 247
Score = 28.0 bits (63), Expect = 8.1
Identities = 8/39 (20%), Positives = 17/39 (43%)
Query: 125 LEDIRAASRTSPNLSSRMFAESQLEVERIINVVVCSGST 163
L+++ AA L ++ ++ E I+ +V G
Sbjct: 39 LQELEAAQALGRPLDTQKAEAARRAAEEKIDRIVYVGDA 77
>gnl|CDD|235585 PRK05733, PRK05733, single-stranded DNA-binding protein;
Provisional.
Length = 172
Score = 27.6 bits (61), Expect = 9.0
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 177 QASQSTSQPDPPQPRQSSASD 197
QA+Q S+P P QP A+D
Sbjct: 142 QAAQQQSRPAPQQPAPQPAAD 162
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.310 0.124 0.359
Gapped
Lambda K H
0.267 0.0749 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,471,034
Number of extensions: 1734179
Number of successful extensions: 1630
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1581
Number of HSP's successfully gapped: 114
Length of query: 410
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 311
Effective length of database: 6,546,556
Effective search space: 2035978916
Effective search space used: 2035978916
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 60 (26.9 bits)