RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3228
(410 letters)
>2crp_A RGS5, regulator of G-protein signaling 5; RGS domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 150
Score = 85.4 bits (211), Expect = 4e-20
Identities = 36/130 (27%), Positives = 55/130 (42%), Gaps = 4/130 (3%)
Query: 25 GSDSSPSPSGGGEALSTSPPNYLEWAKSFNNLLNDPEGLHLFRKYLASENQSDLLEFWFA 84
GS S P + TS L+W S + LL + GL F+ +L SE + LEFW A
Sbjct: 1 GSSGSSGPEKPAKTQKTSLDEALQWRDSLDKLLQNNYGLASFKSFLKSEFSEENLEFWIA 60
Query: 85 CEGLKKQTNQDQINLIVKCIYRRYFKDSRLGLSEECLSSVLEDIRAASRTSPNLSSRMFA 144
CE KK + ++ K IY + + E + +DI + P S F
Sbjct: 61 CEDYKKIKSPAKMAEKAKQIYEEFIQTEA--PKEVNIDHFTKDITMKNLVEP--SLSSFD 116
Query: 145 ESQLEVERII 154
+Q + ++
Sbjct: 117 MAQKRIHALM 126
>1dk8_A Axin; alpha-helix, PI-helix, signaling protein; HET: SO4; 1.57A
{Homo sapiens} SCOP: a.91.1.1 PDB: 1emu_A
Length = 147
Score = 80.1 bits (197), Expect = 3e-18
Identities = 32/96 (33%), Positives = 57/96 (59%), Gaps = 4/96 (4%)
Query: 40 STSPPNYLEWAKSFNNLLNDPEGLHLFRKYLASENQSDLLEFWFACEGLK----KQTNQD 95
++ P YL+WA+S ++LL+D +G+ LFR +L E +DLL+FWFAC G + +N++
Sbjct: 3 ASPTPPYLKWAESLHSLLDDQDGISLFRTFLKQEGCADLLDFWFACTGFRKLEPCDSNEE 62
Query: 96 QINLIVKCIYRRYFKDSRLGLSEECLSSVLEDIRAA 131
+ + + IYR+Y D+ +S + + I+
Sbjct: 63 KRLKLARAIYRKYILDNNGIVSRQTKPATKSFIKGC 98
>2dlv_A RGS18, regulator of G-protein signaling 18; RGS domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 140
Score = 79.6 bits (196), Expect = 4e-18
Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 4/120 (3%)
Query: 35 GGEALSTSPPNYLEWAKSFNNLLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKKQTNQ 94
G S SP ++W +SF+ LL+ +GL F ++L +E + +EFW ACE KK
Sbjct: 1 GSSGSSGSPEEAVKWGESFDKLLSHRDGLEAFTRFLKTEFSEENIEFWIACEDFKKSKGP 60
Query: 95 DQINLIVKCIYRRYFKDSRLGLSEECLSSVLEDIRAASRTSPNLSSRMFAESQLEVERII 154
QI+L K IY ++ + E L +++ S T P + F +Q V +++
Sbjct: 61 QQIHLKAKAIYEKFIQTD--APKEVNLDFHTKEVITNSITQP--TLHSFDAAQSRVYQLM 116
>2af0_A Regulator of G-protein signaling 2; helix, structural genomics,
structural genomics consortium, SGC, signaling protein;
2.30A {Homo sapiens} PDB: 2v4z_B*
Length = 146
Score = 79.7 bits (196), Expect = 4e-18
Identities = 28/129 (21%), Positives = 59/129 (45%), Gaps = 10/129 (7%)
Query: 30 PSPSGGGEALSTSPPNYLEWAKSFNNLLNDPEGLHLFRKYLASENQSDLLEFWFACEGLK 89
+ + +++ SP W+++F+ LL GL FR +L SE + +EFW ACE K
Sbjct: 4 GTENLYFQSMKPSPEEAQLWSEAFDELLASKYGLAAFRAFLKSEFCEENIEFWLACEDFK 63
Query: 90 KQTNQDQINLIVKCIYRRYFKD---SRLGLSEECLSSVLEDIRAASRTSPNLSSRMFAES 146
K + +++ + IY + + + + + + + ++I+ A+ F +
Sbjct: 64 KTKSPQKLSSKARKIYTDFIEKEAPKEINIDFQTKTLIAQNIQEATSG-------CFTTA 116
Query: 147 QLEVERIIN 155
Q V ++
Sbjct: 117 QKRVYSLME 125
>2jm5_A RGS18, regulator of G-protein signaling 18; signaling protein,
structural genomics, structural genomics consortium,
SGC; NMR {Homo sapiens} SCOP: a.91.1.1 PDB: 2owi_A
Length = 151
Score = 79.7 bits (196), Expect = 4e-18
Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 10/116 (8%)
Query: 42 SPPNYLEWAKSFNNLLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKKQTNQDQINLIV 101
SP ++W +SF+ LL+ +GL F ++L +E + +EFW ACE KK QI+L
Sbjct: 4 SPEEAVKWGESFDKLLSHRDGLEAFTRFLKTEFSEENIEFWIACEDFKKSKGPQQIHLKA 63
Query: 102 KCIYRRYFKDS---RLGLSEECLSSVLEDIRAASRTSPNLSSRMFAESQLEVERII 154
K IY ++ + + L + I + F +Q V +++
Sbjct: 64 KAIYEKFIQTDAPKEVNLDFHTKEVITNSITQPTLH-------SFDAAQSRVYQLM 112
>2dlr_A RGS10, regulator of G-protein signaling 10; RGS domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 149
Score = 79.7 bits (196), Expect = 5e-18
Identities = 33/120 (27%), Positives = 51/120 (42%), Gaps = 5/120 (4%)
Query: 35 GGEALSTSPPNYLEWAKSFNNLLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKKQTNQ 94
G S S + +WA S NLL DPEG+ FR++L E + + FW ACE KK ++
Sbjct: 1 GSSGSSGSLKSTAKWAASLENLLEDPEGVKRFREFLKKEFSEENVLFWLACEDFKKMQDK 60
Query: 95 DQINLIVKCIYRRYFKDSRLGLSEECLSSVLEDIRAASRTSPNLSSRMFAESQLEVERII 154
Q+ K IY + +V R + MF + Q ++ ++
Sbjct: 61 TQMQEKAKEIYMTFLSSKA-----SSQVNVEGQSRLNEKILEEPHPLMFQKLQDQIFNLM 115
>2ihd_A RGS8, regulator of G-protein signaling 8; signaling protein,
structural genomics, structura genomics consortium, SGC,
signaling protein; 1.70A {Homo sapiens} PDB: 2ode_B*
2bt2_A
Length = 155
Score = 79.7 bits (196), Expect = 5e-18
Identities = 31/139 (22%), Positives = 55/139 (39%), Gaps = 17/139 (12%)
Query: 26 SDSSPSPSGGGEALST-------SPPNYLEWAKSFNNLLNDPEGLHLFRKYLASENQSDL 78
S G E L S WA SF+ LL+ G+ FR +L +E +
Sbjct: 5 HHHSSGVDLGTENLYFQSMLKRLSTEEATRWADSFDVLLSHKYGVAAFRAFLKTEFSEEN 64
Query: 79 LEFWFACEGLKKQTNQDQINLIVKCIYRRYFKD---SRLGLSEECLSSVLEDIRAASRTS 135
LEFW ACE KK + ++ I+ + + + + + ++++ S T
Sbjct: 65 LEFWLACEEFKKTRSTAKLVSKAHRIFEEFVDVQAPREVNIDFQTREATRKNLQEPSLT- 123
Query: 136 PNLSSRMFAESQLEVERII 154
F ++Q +V ++
Sbjct: 124 ------CFDQAQGKVHSLM 136
>3c7l_A Regulator of G-protein signaling 16; RGS, RGS16, GAP, GTPase
activating protein, heterotrimeric G-protein,
lipoprotein, palmitate, phosphoprotein; 1.89A {Mus
musculus} PDB: 3c7k_B* 2ik8_B*
Length = 137
Score = 78.9 bits (194), Expect = 5e-18
Identities = 26/116 (22%), Positives = 51/116 (43%), Gaps = 6/116 (5%)
Query: 40 STSPPNYLEWAKSFNNLLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKKQTNQDQINL 99
+ + L W +SF+ LLN G+ F +L +E + LEFW ACE KK + ++
Sbjct: 9 GSFSEDVLGWRESFDLLLNSKNGVAAFHAFLKTEFSEENLEFWLACEEFKKIRSATKLAS 68
Query: 100 IVKCIYRRYFKDSRLGLSEECLSSVLEDIRAASRTS-PNLSSRMFAESQLEVERII 154
I+ Y + ++ + R ++T+ ++ F +Q + ++
Sbjct: 69 RAHHIFDEYIRSEA-----PKEVNIDHETRELTKTNLQAATTSCFDVAQGKTRTLM 119
>1cmz_A Protein (GAIP (G-alpha interacting) protein); RGS, regulator of G
protein, signaling protein regulation; NMR {Homo
sapiens} SCOP: a.91.1.1
Length = 152
Score = 78.9 bits (194), Expect = 9e-18
Identities = 38/127 (29%), Positives = 63/127 (49%), Gaps = 5/127 (3%)
Query: 29 SPSPSGGGEALSTSPPNYLEWAKSFNNLLNDPEGLHLFRKYLASENQSDLLEFWFACEGL 88
SP SGGG + + P WA+SF+ L++ P G +FR +L +E + + FW ACE L
Sbjct: 1 SPGISGGGGGIPS-PEEVQSWAQSFDKLMHSPAGRSVFRAFLRTEYSEENMLFWLACEEL 59
Query: 89 KKQTNQDQINLIVKCIYRRYFKDSRLGLSEECLSSVLEDIRAASRTSPNLSSRMFAESQL 148
K + NQ ++ + IY Y E L S + + P S+ F ++QL
Sbjct: 60 KAEANQHVVDEKARLIYEDYVSILS--PKEVSLDSRVREGINKKMQEP--SAHTFDDAQL 115
Query: 149 EVERIIN 155
++ +++
Sbjct: 116 QIYTLMH 122
>2oj4_A RGS3, regulator of G-protein signaling 3, RGP3; RGS domain,
signaling protein inhibitor; 2.30A {Homo sapiens}
Length = 127
Score = 76.5 bits (188), Expect = 3e-17
Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 10/109 (9%)
Query: 49 WAKSFNNLLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKKQTNQDQINLIVKCIYRRY 108
W +S LL GL +F+ +L +E + LEFW ACE KK +Q ++ K I+ Y
Sbjct: 7 WGESLEKLLVHKYGLAVFQAFLRTEFSEENLEFWLACEDFKKVKSQSKMASKAKKIFAEY 66
Query: 109 FKD---SRLGLSEECLSSVLEDIRAASRTSPNLSSRMFAESQLEVERII 154
+ L +++++ +R F +Q + ++
Sbjct: 67 IAIQACKEVNLDSYTREHTKDNLQSVTRG-------CFDLAQKRIFGLM 108
>2ihb_B Regulator of G-protein signalling 10, guanine nucleotide-binding
protein G(K) subunit A; RGS, heterotrimeric G protein,
signall complex; HET: GDP; 2.71A {Homo sapiens} PDB:
2i59_A
Length = 153
Score = 77.0 bits (189), Expect = 5e-17
Identities = 32/128 (25%), Positives = 51/128 (39%), Gaps = 5/128 (3%)
Query: 27 DSSPSPSGGGEALSTSPPNYLEWAKSFNNLLNDPEGLHLFRKYLASENQSDLLEFWFACE 86
G + S + +WA S NLL DPEG+ FR++L E + + FW ACE
Sbjct: 9 SDIHDSDGSSSSSHQSLKSTAKWAASLENLLEDPEGVKRFREFLKKEFSEENVLFWLACE 68
Query: 87 GLKKQTNQDQINLIVKCIYRRYFKDSRLGLSEECLSSVLEDIRAASRTSPNLSSRMFAES 146
KK ++ Q+ K IY + +V R + MF +
Sbjct: 69 DFKKMQDKTQMQEKAKEIYMTFLSSKA-----SSQVNVEGQSRLNEKILEEPHPLMFQKL 123
Query: 147 QLEVERII 154
Q ++ ++
Sbjct: 124 QDQIFNLM 131
>2bv1_A Regulator of G-protein signalling 1; RGS1, RGS, structural
genomics, struct genomics consortium, B-cell activation,
phosphorylation; 2.0A {Homo sapiens} PDB: 2gtp_C*
Length = 145
Score = 74.6 bits (183), Expect = 2e-16
Identities = 33/132 (25%), Positives = 58/132 (43%), Gaps = 13/132 (9%)
Query: 26 SDSSPSPSGGGEALSTSPPNYLEWAKSFNNLLNDPEGLHLFRKYLASENQSDLLEFWFAC 85
S S S + LS ++W++S LL + G ++F +L SE + +EFW AC
Sbjct: 1 SMSGMKSSKSKDVLS--AAEVMQWSQSLEKLLANQTGQNVFGSFLKSEFSEENIEFWLAC 58
Query: 86 EGLKKQTNQDQINLIVKCIYRRYFKDS---RLGLSEECLSSVLEDIRAASRTSPNLSSRM 142
E KK T D + + IY+ + ++ + S + I+A + T
Sbjct: 59 EDYKK-TESDLLPCKAEEIYKAFVHSDAAKQINIDFRTRESTAKKIKAPTPT-------C 110
Query: 143 FAESQLEVERII 154
F E+Q + ++
Sbjct: 111 FDEAQKVIYTLM 122
>1zv4_X RGS17, regulator of G-protein signaling 17; human RGSZ2, human
RGS17(Z2), regulator of G-protein signali opioid
receptor interacting protein; 2.40A {Homo sapiens}
Length = 158
Score = 72.8 bits (178), Expect = 2e-15
Identities = 29/130 (22%), Positives = 62/130 (47%), Gaps = 6/130 (4%)
Query: 26 SDSSPSPSGGGEALSTSPPNYLEWAKSFNNLLNDPEGLHLFRKYLASENQSDLLEFWFAC 85
+ + ++++ + L W+++F+ ++ P G +LFR++L +E + L FW AC
Sbjct: 10 GVDLGTENLYFQSMNPTAEEVLSWSQNFDKMMKAPAGRNLFREFLRTEYSEENLLFWLAC 69
Query: 86 EGLKKQTNQDQINLIVKCIYRRYFKDSRLGLSEECLSSVLEDIRAASRTS-PNLSSRMFA 144
E LKK+ N+ I + IY Y S+ +R + + + M+
Sbjct: 70 EDLKKEQNKKVIEEKARMIYEDYISILS-----PKEVSLDSRVREVINRNLLDPNPHMYE 124
Query: 145 ESQLEVERII 154
++QL++ ++
Sbjct: 125 DAQLQIYTLM 134
>1fqi_A RGS9, regulator of G-protein signaling 9; phototransduction, ROD,
GAP, signaling protein; 1.94A {Bos taurus} SCOP:
a.91.1.1 PDB: 1fqj_B* 1fqk_B*
Length = 147
Score = 70.8 bits (173), Expect = 5e-15
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 37 EALSTSPPNYLE---WAKSFNNLLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKKQTN 93
A P + WA +F+ L+ DP+G F+ +L E + L FW ACE LK +
Sbjct: 6 NAKLVDIPTKMRVERWAFNFSELIRDPKGRQSFQHFLRKEFSGENLGFWEACEDLKY-GD 64
Query: 94 QDQINLIVKCIYRRYFKDS 112
Q ++ + IY+ +
Sbjct: 65 QSKVKEKAEEIYKLFLAPG 83
>1agr_E RGS4; GI-alpha-1, hydrolase, signal transduction, complex (signal
transduction/regulator), GTP-binding, GTPase activating
protein; HET: GDP CIT; 2.80A {Rattus norvegicus} SCOP:
a.91.1.1 PDB: 1ezt_A 1ezy_A
Length = 205
Score = 71.3 bits (174), Expect = 1e-14
Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 2/101 (1%)
Query: 15 FAPLGFEPEGGSDSSPSPSGGGEALST--SPPNYLEWAKSFNNLLNDPEGLHLFRKYLAS 72
L + + SS S +WA+S NL+N GL F+ +L S
Sbjct: 23 LGFLLQKSDSCEHSSSHSKKDKVVTCQRVSQEEVKKWAESLENLINHECGLAAFKAFLKS 82
Query: 73 ENQSDLLEFWFACEGLKKQTNQDQINLIVKCIYRRYFKDSR 113
E + ++FW +CE KK + +++ K IY +
Sbjct: 83 EYSEENIDFWISCEEYKKIKSPSKLSPKAKKIYNEFISVQA 123
>2jnu_A RGS14, regulator of G-protein signaling 14; regulator of G-protein
signalling domain, structural genomics, structural
genomics consortium, SGC; NMR {Homo sapiens}
Length = 154
Score = 68.9 bits (168), Expect = 3e-14
Identities = 26/117 (22%), Positives = 45/117 (38%), Gaps = 7/117 (5%)
Query: 41 TSPPNYLEWAKSFNNLLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKK--QTNQDQIN 98
T WA SF LL DP GL F ++L E ++ + FW ACE ++ ++ Q+
Sbjct: 3 TEEQPVASWALSFERLLQDPLGLAYFTEFLKKEFSAENVTFWKACERFQQIPASDTQQLA 62
Query: 99 LIVKCIYRRYFKDSRLGLSEECLSSVLEDIRAASRTSPNLSSRMFAESQLEVERIIN 155
+ IY+ + ++ MF QL++ ++
Sbjct: 63 QEARNIYQEFLSSQA-----LSPVNIDRQAWLGEEVLAEPRPDMFRAQQLQIFNLMK 114
>2ebz_A RGS12, regulator of G-protein signaling 12; RGS domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 155
Score = 68.6 bits (167), Expect = 4e-14
Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 2/75 (2%)
Query: 40 STSPPNYLEWAKSFNNLLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKKQTNQDQINL 99
S WA SF LL DP G+ F +L E + + FW ACE D+ L
Sbjct: 6 SGRERRVASWAVSFERLLQDPVGVRYFSDFLRKEFSEENILFWQACEYFNHVPAHDKKEL 65
Query: 100 IVKC--IYRRYFKDS 112
+ I+ ++
Sbjct: 66 SYRAREIFSKFLCSK 80
>2a72_A Regulator of G-protein signalling 7; human RGS7, regulator of
G-protein signaling 7, GTPase-activ proteins (GAP),
structural genomics; 2.00A {Homo sapiens} PDB: 2d9j_A
2es0_A
Length = 146
Score = 68.1 bits (166), Expect = 4e-14
Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 5/114 (4%)
Query: 42 SPPNYLEWAKSFNNLLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKKQTNQDQINLIV 101
S W + L DP G F K+L SE S+ L FW A E LKK+ ++ + V
Sbjct: 6 SQQRVKRWGFGMDEALKDPVGREQFLKFLESEFSSENLRFWLAVEDLKKRPIKEVPSR-V 64
Query: 102 KCIYRRYFKDSRLGLSEECLSSVLEDIRAASRTSPNLSSRMFAESQLEVERIIN 155
+ I++ + S L S D + P F ++Q + +++
Sbjct: 65 QEIWQEFLAPG--APSAINLDSKSYDKTTHNVKEP--GRYTFEDAQEHIYKLMK 114
>2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain, DEP
domain, DHEX domain, GGL domain, propeller, signaling
protein; 1.95A {Mus musculus}
Length = 424
Score = 71.4 bits (174), Expect = 1e-13
Identities = 28/139 (20%), Positives = 49/139 (35%), Gaps = 5/139 (3%)
Query: 16 APLGFEPEGGSDSSPSPSGGGEALSTSPPNYLEWAKSFNNLLNDPEGLHLFRKYLASENQ 75
L P D+ + WA +F+ L+ DP+G F+ +L E
Sbjct: 265 GCLPSNPWITDDTQFWDLNAKLVEIPTKMRVERWAFNFSELIRDPKGRQSFQYFLKKEFS 324
Query: 76 SDLLEFWFACEGLKKQTNQDQINLIVKCIYRRYFKDSRLGLSEECLSSVLEDIRAASRTS 135
+ L FW ACE LK +Q ++ + IY+ + + DI
Sbjct: 325 GENLGFWEACEDLKY-GDQSKVKEKAEEIYKLFLAPG--ARRWINIDGKTMDITVKGLRH 381
Query: 136 PNLSSRMFAESQLEVERII 154
P + +Q + ++
Sbjct: 382 P--HRYVLDAAQTHIYMLM 398
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.5 bits (86), Expect = 0.007
Identities = 25/132 (18%), Positives = 38/132 (28%), Gaps = 53/132 (40%)
Query: 57 LNDPEGLHLFRKYLASENQSDL-------------------------LEFWFACEGLKKQ 91
L E L KYL Q DL + W K
Sbjct: 298 LTPDEVKSLLLKYLDCRPQ-DLPREVLTTNPRRLSIIAESIRDGLATWDNW-------KH 349
Query: 92 TNQDQINLIVK-CI-------YRRYFKDSRLGLSEECLSSVLEDIRAASRTSPNLSSRMF 143
N D++ I++ + YR+ F L + S I + LS F
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKMFDR--LSVFPP---SA--HI-----PTILLSLIWF 397
Query: 144 AESQLEVERIIN 155
+ +V ++N
Sbjct: 398 DVIKSDVMVVVN 409
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP:
a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 36.7 bits (84), Expect = 0.016
Identities = 22/145 (15%), Positives = 35/145 (24%), Gaps = 9/145 (6%)
Query: 170 SHAGAVSQASQSTSQPDPPQPRQSSASDN--QYPHSYGNQGIQHTSSAASDASSHSTRNQ 227
SH P Q A Q P + G Q S +
Sbjct: 2 SHHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQF 61
Query: 228 TSSNMHQNMHQNMHSSGHQSNMHHSSGPNMHDSSGHQSMHQSNMHQSGHQSNMHQNMDLM 287
+ Q Q ++ ++MH + P + ++ Q M Q
Sbjct: 62 LTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAA--- 118
Query: 288 SKSCPTSSSLALMAPQSGHPDNHPR 312
P + Q+ P N
Sbjct: 119 ----PAYGQPSAAMGQNMRPMNQLY 139
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.6 bits (79), Expect = 0.075
Identities = 58/438 (13%), Positives = 119/438 (27%), Gaps = 168/438 (38%)
Query: 40 STSPPNYLEWAKSF---NNLLNDPEGLH----LFRKYLASENQSDL-LEF--------WF 83
T+ E K++ + P LFR E + L F +F
Sbjct: 113 DTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRA--VGEGNAQLVAIFGGQGNTDDYF 170
Query: 84 ACEGLKKQTNQDQINLIVKCIYRRY--FKDSRLGLSEECLSSVLEDIRAASR-------- 133
E L+ +Y+ Y + S E LS ++ A +
Sbjct: 171 --EELRD-------------LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNI 215
Query: 134 --------TSPN---LSSRMFAESQLEVERIINVVVCSGSTTGSSSGSHAGAVSQASQST 182
+P+ L S + + V ++ + VV T G G + +
Sbjct: 216 LEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVV-----TAKLLGFTPGELRSYLKGA 270
Query: 183 SQPDPPQPRQSSASDNQYPHSYGNQGIQHTSSAASDASSHSTRNQTSSNMHQNMHQNMH- 241
+ HS QG+ +A + A + + + ++ + +
Sbjct: 271 TG-----------------HS---QGLV---TAVAIAET-----DSWESFFVSVRKAITV 302
Query: 242 -----SSGHQSNMHHSSGPNMHDSSGHQSMHQSNMHQSGHQSNM-----------HQNMD 285
+++ + S P++ + S + G S M ++
Sbjct: 303 LFFIGVRCYEAYPNTSLPPSI--------LEDSLENNEGVPSPMLSISNLTQEQVQDYVN 354
Query: 286 LMSKSCPTSS--SLALM-APQ----SGHP-------------------DNH--------P 311
+ P ++L+ + SG P D
Sbjct: 355 KTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKL 414
Query: 312 RASSS--PI--P--SDIVSDALSSLTEDLASSLPTLHEDRYKGRAIVFASVSVVCLSLPT 365
+ S+ P+ P S ++ A + +DL + F + + +P
Sbjct: 415 KFSNRFLPVASPFHSHLLVPASDLINKDLVK------------NNVSFNAKD---IQIPV 459
Query: 366 LH-EDSEDFDYRNKPLPP 382
D D + +
Sbjct: 460 YDTFDGSDLRVLSGSISE 477
Score = 33.9 bits (77), Expect = 0.13
Identities = 25/131 (19%), Positives = 43/131 (32%), Gaps = 42/131 (32%)
Query: 315 SSPIPSDIVSDALSSLTEDLASSL-------P---TLHEDRYKGRAI-------VFASVS 357
+S D+ + A + + S+ P T+H KG+ I +F ++
Sbjct: 1638 TSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIV 1697
Query: 358 VVCLS----LPTLHEDSEDFDYRNKPLPPGPK----LTKDS---LLAT--ARKRTMLRSK 404
L ++E S + +R K T+ + L A L+SK
Sbjct: 1698 DGKLKTEKIFKEINEHSTSYTFR------SEKGLLSATQFTQPALTLMEKAAFE-DLKSK 1750
Query: 405 -----PEAFAG 410
FAG
Sbjct: 1751 GLIPADATFAG 1761
Score = 30.0 bits (67), Expect = 1.7
Identities = 12/73 (16%), Positives = 20/73 (27%), Gaps = 30/73 (41%)
Query: 114 LGLSEECLSSVLEDIRAASRTSPNLSSRMFAESQLEVERIIN------VVVCSGSTTGSS 167
S+E L V+E + + VE I+N V +G
Sbjct: 1819 ASFSQEALQYVVERVG--------------KRTGWLVE-IVNYNVENQQYVAAG------ 1857
Query: 168 SGSHAGAVSQASQ 180
A+ +
Sbjct: 1858 ---DLRALDTVTN 1867
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase,
N-glucosyltransferase, UDP-glucose- dependent, plant
glycosyltransferase; HET: UDP; 1.45A {Arabidopsis
thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Length = 480
Score = 32.6 bits (75), Expect = 0.22
Identities = 23/96 (23%), Positives = 34/96 (35%), Gaps = 19/96 (19%)
Query: 313 ASSSPIPSDIVSDALSSLTEDLASSL--PTLHEDRYKGRAIVF----ASVSVVCLSLPTL 366
+P+ +V D + D+A P +F A+V L LP L
Sbjct: 105 VEGGRLPTALVVDLFGTDAFDVAVEFHVPP----------YIFYPTTANVLSFFLHLPKL 154
Query: 367 HED-SEDFDYRNKPLP-PG-PKLTKDSLLATARKRT 399
E S +F +PL PG + L A+ R
Sbjct: 155 DETVSCEFRELTEPLMLPGCVPVAGKDFLDPAQDRK 190
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus
interaction, metal-binding, nucleus, receptor,
transcription, transcription regulation, zinc-FIN
activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB:
3dzu_A* 3e00_A*
Length = 467
Score = 32.0 bits (72), Expect = 0.35
Identities = 22/136 (16%), Positives = 37/136 (27%), Gaps = 3/136 (2%)
Query: 232 MHQNMHQNMHSSGH---QSNMHHSSGPNMHDSSGHQSMHQSNMHQSGHQSNMHQNMDLMS 288
M + H ++ + P S S+H S G +H + +S
Sbjct: 1 MAHHHHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLS 60
Query: 289 KSCPTSSSLALMAPQSGHPDNHPRASSSPIPSDIVSDALSSLTEDLASSLPTLHEDRYKG 348
+ P + ++ + S LSS ++SS G
Sbjct: 61 SPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNG 120
Query: 349 RAIVFASVSVVCLSLP 364
V A S S
Sbjct: 121 VLKVPAHPSGNMASFT 136
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop,
phenylalanine mutant, hydrolase; 2.35A {Pyrococcus
horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A
3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A
3sdz_A
Length = 588
Score = 32.0 bits (73), Expect = 0.40
Identities = 28/94 (29%), Positives = 36/94 (38%), Gaps = 21/94 (22%)
Query: 108 YFKD------------SR--LGLSEECLSSVLEDIRAASRTSPNLSSRMFAESQLEVERI 153
YF+D SR L E +S LE++ L+S++ AE ER
Sbjct: 318 YFRDMGYDVALMADSTSRWAEALRE--ISGRLEEMPGEEGYPAYLASKL-AEFY---ERA 371
Query: 154 INVVVCSGSTTGSSSGSHAGAVSQASQSTSQPDP 187
VV GS S S GAVS S+P
Sbjct: 372 -GRVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVV 404
>3odm_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta-barrel, lyase;
2.95A {Clostridium perfringens}
Length = 560
Score = 30.1 bits (67), Expect = 1.4
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 12/48 (25%)
Query: 262 GHQSMHQSNMHQSGHQSNMHQNMDLMSKSCPTSSSLALMAPQSGHPDN 309
GH H + H SGH + ++M + P M Q HPDN
Sbjct: 2 GHHHHHHHHHHSSGHIDDDDKHMKI-----PC-----SMMTQ--HPDN 37
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 1.6
Identities = 6/13 (46%), Positives = 7/13 (53%), Gaps = 1/13 (7%)
Query: 295 SSLALMAPQSGHP 307
+SL L A S P
Sbjct: 27 ASLKLYADDSA-P 38
>1r8s_E ARNO; protein transport/exchange factor, protein transport-exchang
complex; HET: GDP; 1.46A {Homo sapiens} SCOP: a.118.3.1
PDB: 1r8m_E* 1r8q_E* 1s9d_E* 1pbv_A 1bc9_A
Length = 203
Score = 28.1 bits (63), Expect = 4.0
Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 12/89 (13%)
Query: 50 AKSFNNLLNDPE-GL-HLFRKYLASENQSDLLEFWFACEGLKKQT------NQDQINLIV 101
K FN DP+ G+ L L ++ F + EGL K ++++NL V
Sbjct: 20 RKKFNM---DPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELNLAV 76
Query: 102 KCIYRRYFKDSRLGLSEECLSSVLEDIRA 130
+ + + L L + L L R
Sbjct: 77 LHAFVDLHEFTDLNL-VQALRQFLWSFRL 104
>3cij_A UPF0100 protein AF_0094; archaeal periplasmic binding protein,
unknown function, metal binding protein, transport
protein; 1.07A {Archaeoglobus fulgidus} PDB: 2ons_A
2onk_E 2onr_A
Length = 295
Score = 27.8 bits (61), Expect = 6.0
Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 4 IEITTYPPPDGFAPLGFEPEGGSDSSPSPSGGGEALSTSPPNYLEWAKSFNNLLNDPEGL 63
I++++ + ++ + G + + P G + + N E A F L+ EG
Sbjct: 226 IDLSSPDYAELYSKVKVVLANGKEVTGKPIVYGITIPKNAENR-ELAVEFVKLVISEEGQ 284
Query: 64 HLFRKY 69
+ R+
Sbjct: 285 EILREL 290
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.310 0.124 0.359
Gapped
Lambda K H
0.267 0.0557 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,787,004
Number of extensions: 317849
Number of successful extensions: 621
Number of sequences better than 10.0: 1
Number of HSP's gapped: 614
Number of HSP's successfully gapped: 47
Length of query: 410
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 314
Effective length of database: 4,021,377
Effective search space: 1262712378
Effective search space used: 1262712378
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.5 bits)