RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3228
(410 letters)
>d2jm5a1 a.91.1.1 (A:3-134) Regulator of G-protein signaling 18,
RGS18 {Human (Homo sapiens) [TaxId: 9606]}
Length = 132
Score = 88.1 bits (218), Expect = 1e-21
Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 10/116 (8%)
Query: 42 SPPNYLEWAKSFNNLLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKKQTNQDQINLIV 101
SP ++W +SF+ LL+ +GL F ++L +E + +EFW ACE KK QI+L
Sbjct: 2 SPEEAVKWGESFDKLLSHRDGLEAFTRFLKTEFSEENIEFWIACEDFKKSKGPQQIHLKA 61
Query: 102 KCIYRRYFKDSRLGLSEECLSSVLEDIRAASRTSPNL---SSRMFAESQLEVERII 154
K IY ++ + + V D + ++ + F +Q V +++
Sbjct: 62 KAIYEKF-------IQTDAPKEVNLDFHTKEVITNSITQPTLHSFDAAQSRVYQLM 110
>d1cmza_ a.91.1.1 (A:) Galpha interacting protein, GaIP {Human (Homo
sapiens) [TaxId: 9606]}
Length = 128
Score = 82.0 bits (202), Expect = 1e-19
Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 10/116 (8%)
Query: 42 SPPNYLEWAKSFNNLLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKKQTNQDQINLIV 101
SP WA+SF+ L++ P G +FR +L +E + + FW ACE LK + NQ ++
Sbjct: 2 SPEEVQSWAQSFDKLMHSPAGRSVFRAFLRTEYSEENMLFWLACEELKAEANQHVVDEKA 61
Query: 102 KCIYRRYFKDSRLGLSEECLSSVLEDIRAASRTSPNL---SSRMFAESQLEVERII 154
+ IY Y +S V D R + + S+ F ++QL++ ++
Sbjct: 62 RLIYEDY-------VSILSPKEVSLDSRVREGINKKMQEPSAHTFDDAQLQIYTLM 110
>d1dk8a_ a.91.1.1 (A:) Axin RGS-homologous domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 147
Score = 80.5 bits (198), Expect = 7e-19
Identities = 40/120 (33%), Positives = 69/120 (57%), Gaps = 6/120 (5%)
Query: 40 STSP-PNYLEWAKSFNNLLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKK----QTNQ 94
S SP P YL+WA+S ++LL+D +G+ LFR +L E +DLL+FWFAC G +K +N+
Sbjct: 2 SASPTPPYLKWAESLHSLLDDQDGISLFRTFLKQEGCADLLDFWFACTGFRKLEPCDSNE 61
Query: 95 DQINLIVKCIYRRYFKDSRLGLSEECLSSVLEDIRAASRTSPNLSSRMFAESQLEVERII 154
++ + + IYR+Y D+ +S + + I+ + MF ++Q E++ +
Sbjct: 62 EKRLKLARAIYRKYILDNNGIVSRQTKPATKSFIKGCIMKQL-IDPAMFDQAQTEIQATM 120
>d1agre_ a.91.1.1 (E:) Regulator of G-protein signaling 4, RGS4 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 128
Score = 80.0 bits (197), Expect = 8e-19
Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 4/106 (3%)
Query: 49 WAKSFNNLLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKKQTNQDQINLIVKCIYRRY 108
WA+S NL+N GL F+ +L SE + ++FW +CE KK + +++ K IY +
Sbjct: 9 WAESLENLINHECGLAAFKAFLKSEYSEENIDFWISCEEYKKIKSPSKLSPKAKKIYNEF 68
Query: 109 FKDSRLGLSEECLSSVLEDIRAASRTSPNLSSRMFAESQLEVERII 154
S E L S + + + P ++ F E+Q ++ ++
Sbjct: 69 I--SVQATKEVNLDSCTREETSRNMLEPTIT--CFDEAQKKIFNLM 110
>d1fqia_ a.91.1.1 (A:) RGS9, RGS domain {Cow (Bos taurus) [TaxId:
9913]}
Length = 138
Score = 75.4 bits (185), Expect = 4e-17
Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 5/106 (4%)
Query: 49 WAKSFNNLLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKKQTNQDQINLIVKCIYRRY 108
WA +F+ L+ DP+G F+ +L E + L FW ACE LK +Q ++ + IY+ +
Sbjct: 14 WAFNFSELIRDPKGRQSFQHFLRKEFSGENLGFWEACEDLKY-GDQSKVKEKAEEIYKLF 72
Query: 109 FKDSRLGLSEECLSSVLEDIRAASRTSPNLSSRMFAESQLEVERII 154
+ + DI P + +Q + ++
Sbjct: 73 L--APGARRWINIDGKTMDITVKGLKHP--HRYVLDAAQTHIYMLM 114
>d1omwa1 a.91.1.1 (A:29-185) G-protein coupled receptor kinase 2,
N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 157
Score = 73.8 bits (181), Expect = 2e-16
Identities = 20/132 (15%), Positives = 43/132 (32%), Gaps = 16/132 (12%)
Query: 30 PSPSGGGEALSTSPPNYLE--WAKSFNNLLNDPEGLHLFRKYLASEN--QSDLLEFWFAC 85
P PS + + YLE +F + + G LFR + L+EF+
Sbjct: 7 PEPS-----IRSVMQKYLEDRGEVTFEKIFSQKLGYLLFRDFCLKHLEEAKPLVEFYEEI 61
Query: 86 EGLKKQTNQDQINLIVKCIYRRYFKDSRLGLSEECLSSVLEDIRAASRTS---PNLSSRM 142
+ +K +++ + + I+ Y C + + + +
Sbjct: 62 KKYEKLETEEERLVCSREIFDTYIMKE----LLACSHPFSKSAIEHVQGHLVKKQVPPDL 117
Query: 143 FAESQLEVERII 154
F E+ + +
Sbjct: 118 FQPYIEEICQNL 129
>d2ik8b1 a.91.1.1 (B:65-180) Regulator of G-protein signaling 16,
RGS16 {Human (Homo sapiens) [TaxId: 9606]}
Length = 116
Score = 70.1 bits (171), Expect = 2e-15
Identities = 21/103 (20%), Positives = 43/103 (41%), Gaps = 4/103 (3%)
Query: 52 SFNNLLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKKQTNQDQINLIVKCIYRRYFKD 111
SF+ LL+ G+ F +L +E + LEFW ACE KK + ++ I+ +
Sbjct: 1 SFDLLLSSKNGVAAFHAFLKTEFSEENLEFWLACEEFKKIRSATKLASRAHQIFEEFICS 60
Query: 112 SRLGLSEECLSSVLEDIRAASRTSPNLSSRMFAESQLEVERII 154
E + ++ + + ++ F +Q + ++
Sbjct: 61 EA--PKEVNIDHETRELTRMNLQTA--TATCFDAAQGKTRTLM 99
>d1htjf_ a.91.1.1 (F:) Pdz-RhoGEF RGS-like domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 182
Score = 52.1 bits (125), Expect = 1e-08
Identities = 18/108 (16%), Positives = 40/108 (37%), Gaps = 9/108 (8%)
Query: 51 KSFNNLLNDPEGLHLFRKYLASENQSDLLEFWFACEGLKKQTNQDQINLIVKCIYRRYFK 110
+ L + P L +F +Y+ S+ L F+ E +Q + + K I+ + +
Sbjct: 7 QDLEKLKSRPAHLGVFLRYIFSQADPSPLLFYLCAEVY-QQASPKDSRSLGKDIWNIFLE 65
Query: 111 D---SRLGLSEECLSSVLEDIRAASRTSPNLSSRMFAESQLEVERIIN 155
R+ + E + + +R + + + E+Q I
Sbjct: 66 KNAPLRVKIPEMLQAEIDSRLR-----NSEDARGVLCEAQEAAMPEIQ 108
>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus
sp. [TaxId: 1409]}
Length = 276
Score = 31.6 bits (70), Expect = 0.15
Identities = 15/180 (8%), Positives = 41/180 (22%)
Query: 156 VVVCSGSTTGSSSGSHAGAVSQASQSTSQPDPPQPRQSSASDNQYPHSYGNQGIQHTSSA 215
+ SG+ G ++ + AG + ++ + S +
Sbjct: 31 ALFESGTMGGRTTSAAAGMLGAHAECEERDAFFDFAMHSQRLYKGLGEELYALSGVDIRQ 90
Query: 216 ASDASSHSTRNQTSSNMHQNMHQNMHSSGHQSNMHHSSGPNMHDSSGHQSMHQSNMHQSG 275
+ ++ + M S + P S Q ++H
Sbjct: 91 HNGGMFKLAFSEEDVLQLRQMDDLDSVSWYSKEEVLEKEPYASGDIFGASFIQDDVHVEP 150
Query: 276 HQSNMHQNMDLMSKSCPTSSSLALMAPQSGHPDNHPRASSSPIPSDIVSDALSSLTEDLA 335
+ ++ + + S + ++ V A +
Sbjct: 151 YFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSGDVWANHVVVASGVWSGMFF 210
>d1fusa_ d.1.1.4 (A:) RNase F1 {Fusarium moniliforme [TaxId:
117187]}
Length = 106
Score = 28.3 bits (63), Expect = 0.62
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 8/49 (16%)
Query: 158 VCSGSTTGSSSGSHAGAVSQASQSTSQPDPPQPRQSSASDNQYPHSYGN 206
GST S+S A A + A Q D +A + YPH+Y N
Sbjct: 4 TTCGSTNYSASQVRA-AANAACQYYQNDD-------TAGSSTYPHTYNN 44
>d2ix4a1 c.95.1.1 (A:31-300) Beta-ketoacyl-ACP synthase II {Thale
cress (Arabidopsis thaliana), mitochondrial isoform
[TaxId: 3702]}
Length = 270
Score = 28.1 bits (61), Expect = 1.9
Identities = 16/91 (17%), Positives = 27/91 (29%), Gaps = 5/91 (5%)
Query: 232 MHQNMHQNMHSSGHQSNMHHSSGPNMHDSSGHQSMHQSNMH-----QSGHQSNMHQNMDL 286
+SGH S + GPN + + S Q G M
Sbjct: 148 FFIPKILVNMASGHVSMKYGFQGPNHAAVTACATGAHSIGDATRMIQFGDADVMVAGGTE 207
Query: 287 MSKSCPTSSSLALMAPQSGHPDNHPRASSSP 317
S + + + S ++ P+ +S P
Sbjct: 208 SSIDALSVAGFSRSRALSTKFNSSPQEASRP 238
>d1i0va_ d.1.1.4 (A:) RNase T1 {Aspergillus oryzae [TaxId: 5062]}
Length = 104
Score = 25.9 bits (57), Expect = 4.0
Identities = 12/46 (26%), Positives = 16/46 (34%), Gaps = 8/46 (17%)
Query: 161 GSTTGSSSGSHAGAVSQASQSTSQPDPPQPRQSSASDNQYPHSYGN 206
GS SSS A + + + + N YPH Y N
Sbjct: 7 GSNCYSSSDVST-AQAAGYKLHEDGE-------TVGSNSYPHKYNN 44
>d1hbxg_ a.4.5.21 (G:) Serum response factor accessory protein 1a,
SAP-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 155
Score = 26.5 bits (58), Expect = 4.3
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 161 GSTTGSSSGSHAGAVSQASQSTSQPD---PPQPRQSSASDNQYPHS 203
G G + VS +S+ PPQP ++S N Y HS
Sbjct: 98 GRIEGDCESLNFSEVSSSSKDVENGGKDKPPQPGAKTSSRNDYIHS 143
>d1nd1a_ d.92.1.9 (A:) Snake venom metalloprotease {Terciopelo
(Bothrops asper), bap1 [TaxId: 8722]}
Length = 202
Score = 26.7 bits (58), Expect = 4.6
Identities = 12/78 (15%), Positives = 18/78 (23%)
Query: 202 HSYGNQGIQHTSSAASDASSHSTRNQTSSNMHQNMHQNMHSSGHQSNMHHSSGPNMHDSS 261
G +T S S N H GH + H +G +
Sbjct: 103 FDGNTIGRAYTGGMCDPRHSVGVVRDHSKNNLWVAVTMAHELGHNLGIDHDTGSCSCGAK 162
Query: 262 GHQSMHQSNMHQSGHQSN 279
+ S S+
Sbjct: 163 SCIMASVLSKVLSYEFSD 180
>d1m7sa_ e.5.1.1 (A:) Catalase I {Pseudomonas syringae [TaxId: 317]}
Length = 484
Score = 26.8 bits (59), Expect = 5.2
Identities = 15/78 (19%), Positives = 20/78 (25%), Gaps = 19/78 (24%)
Query: 185 PDPP-QPRQSSASDNQYPHSYGNQGIQHTSSAASDASSHSTRNQTSSNMHQNMHQNMHSS 243
D Q R S +D Q N N + N +
Sbjct: 321 EDRLLQGRVFSYADTQMYRLGANG------------------LSLPVNQPKVAVNNGNQD 362
Query: 244 GHQSNMHHSSGPNMHDSS 261
G + H +SG N S
Sbjct: 363 GALNTGHTTSGVNYEPSR 380
>d1r55a_ d.92.1.9 (A:) ADAM33 {Human (Homo sapiens) [TaxId: 9606]}
Length = 203
Score = 25.9 bits (56), Expect = 8.0
Identities = 13/62 (20%), Positives = 20/62 (32%)
Query: 248 NMHHSSGPNMHDSSGHQSMHQSNMHQSGHQSNMHQNMDLMSKSCPTSSSLALMAPQSGHP 307
S G + S + H+ GH + + D S +MA +GHP
Sbjct: 114 RAESSGGVSTDHSELPIGAAATMAHEIGHSLGLSHDPDGCCVEAAAESGGCVMAAATGHP 173
Query: 308 DN 309
Sbjct: 174 FP 175
>d1nq7a_ a.123.1.1 (A:) Orphan nuclear receptor ROR-beta {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 244
Score = 25.9 bits (56), Expect = 9.7
Identities = 14/147 (9%), Positives = 38/147 (25%), Gaps = 9/147 (6%)
Query: 146 SQLEVERIINVVVCSGSTTGSSSGSHAGAVSQASQSTSQPDPPQPRQSSASDNQYPHSYG 205
+ E++RI ++ S T + ++ + + + Q +S + Q
Sbjct: 1 TMSEIDRIAQNIIKSHLETCQYTMEELHQLAWQTHTYEEIKAYQS-KSREALWQQCAIQI 59
Query: 206 NQGIQHTSSAASDASSHSTRNQTSSNMHQNMHQNMHSSGHQSNMHHSSGPNMHDSS---G 262
IQ+ A + + + N +++
Sbjct: 60 THAIQYVVEFA-----KRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVLFE 114
Query: 263 HQSMHQSNMHQSGHQSNMHQNMDLMSK 289
+ G +++ D
Sbjct: 115 GKYGGMQMFKALGSDDLVNEAFDFAKN 141
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.310 0.124 0.359
Gapped
Lambda K H
0.267 0.0569 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,390,737
Number of extensions: 59571
Number of successful extensions: 172
Number of sequences better than 10.0: 1
Number of HSP's gapped: 171
Number of HSP's successfully gapped: 25
Length of query: 410
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 323
Effective length of database: 1,213,086
Effective search space: 391826778
Effective search space used: 391826778
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (24.9 bits)