BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3229
(174 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5R5J6|GCP2_PONAB Gamma-tubulin complex component 2 OS=Pongo abelii GN=TUBGCP2 PE=2
SV=1
Length = 902
Score = 102 bits (254), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 63/85 (74%)
Query: 3 VEWPLSLIFNQKIIGCYQMLFRHLLLCKHVERQLCNVWLCHKSVKTESKSARESYLKSFA 62
V+WPLSLI N+K + YQMLFRH+ CKHVERQLC+VW+ +K+ K S + + + +F
Sbjct: 622 VKWPLSLIINRKALTRYQMLFRHMFYCKHVERQLCSVWISNKTAKQHSLPSAQWFAGAFT 681
Query: 63 LRQQMLFCIQNLEYYMMEEVIESNY 87
LRQ+ML +QN++YYMM EV+E +
Sbjct: 682 LRQRMLNFVQNIQYYMMFEVMEPTW 706
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 34/50 (68%)
Query: 116 SVWLCHKSVKTESKSARESYLKSFALRQQMLFCIQNLEYYMMEEVIESNY 165
SVW+ +K+ K S + + + +F LRQ+ML +QN++YYMM EV+E +
Sbjct: 657 SVWISNKTAKQHSLPSAQWFAGAFTLRQRMLNFVQNIQYYMMFEVMEPTW 706
>sp|Q9BSJ2|GCP2_HUMAN Gamma-tubulin complex component 2 OS=Homo sapiens GN=TUBGCP2 PE=1
SV=2
Length = 902
Score = 101 bits (251), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 63/85 (74%)
Query: 3 VEWPLSLIFNQKIIGCYQMLFRHLLLCKHVERQLCNVWLCHKSVKTESKSARESYLKSFA 62
V+WPLSLI N+K + YQMLFRH+ CKHVERQLC+VW+ +K+ K S + + + +F
Sbjct: 622 VKWPLSLIINRKALTRYQMLFRHMFYCKHVERQLCSVWISNKTAKQHSLHSAQWFAGAFT 681
Query: 63 LRQQMLFCIQNLEYYMMEEVIESNY 87
LRQ+ML +QN++YYMM EV+E +
Sbjct: 682 LRQRMLNFVQNIQYYMMFEVMEPTW 706
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 34/50 (68%)
Query: 116 SVWLCHKSVKTESKSARESYLKSFALRQQMLFCIQNLEYYMMEEVIESNY 165
SVW+ +K+ K S + + + +F LRQ+ML +QN++YYMM EV+E +
Sbjct: 657 SVWISNKTAKQHSLHSAQWFAGAFTLRQRMLNFVQNIQYYMMFEVMEPTW 706
>sp|Q921G8|GCP2_MOUSE Gamma-tubulin complex component 2 OS=Mus musculus GN=Tubgcp2 PE=2
SV=2
Length = 905
Score = 99.8 bits (247), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 44/85 (51%), Positives = 63/85 (74%)
Query: 3 VEWPLSLIFNQKIIGCYQMLFRHLLLCKHVERQLCNVWLCHKSVKTESKSARESYLKSFA 62
V+WPLSLI N+K + YQMLFRH+ CKHVERQLC+VW+ +K+ K + + + + +F
Sbjct: 622 VKWPLSLIINRKALTRYQMLFRHMFYCKHVERQLCSVWISNKTAKQHALHSAKWFAGAFT 681
Query: 63 LRQQMLFCIQNLEYYMMEEVIESNY 87
LRQ+ML +QN++YYMM EV+E +
Sbjct: 682 LRQRMLNFVQNIQYYMMFEVMEPTW 706
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 34/50 (68%)
Query: 116 SVWLCHKSVKTESKSARESYLKSFALRQQMLFCIQNLEYYMMEEVIESNY 165
SVW+ +K+ K + + + + +F LRQ+ML +QN++YYMM EV+E +
Sbjct: 657 SVWISNKTAKQHALHSAKWFAGAFTLRQRMLNFVQNIQYYMMFEVMEPTW 706
>sp|Q9XYP7|GCP2_DROME Gamma-tubulin complex component 2 homolog OS=Drosophila
melanogaster GN=Grip84 PE=1 SV=2
Length = 852
Score = 93.6 bits (231), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 46/92 (50%), Positives = 58/92 (63%)
Query: 3 VEWPLSLIFNQKIIGCYQMLFRHLLLCKHVERQLCNVWLCHKSVKTESKSARESYLKSFA 62
V+WP SL+ N I YQMLFR L CKHVERQLC +W + + A Y +F
Sbjct: 605 VKWPCSLVLNHISISKYQMLFRQLFYCKHVERQLCKIWKENSIARQFEPQAASLYRAAFT 664
Query: 63 LRQQMLFCIQNLEYYMMEEVIESNYTHFIKSL 94
LRQ+M+ IQNLEYYMM E+IE N+ FI+ +
Sbjct: 665 LRQRMMNAIQNLEYYMMIEIIEPNWHIFIEKM 696
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 33/56 (58%)
Query: 117 VWLCHKSVKTESKSARESYLKSFALRQQMLFCIQNLEYYMMEEVIESNYTHFIKSL 172
+W + + A Y +F LRQ+M+ IQNLEYYMM E+IE N+ FI+ +
Sbjct: 641 IWKENSIARQFEPQAASLYRAAFTLRQRMMNAIQNLEYYMMIEIIEPNWHIFIEKM 696
>sp|Q95ZG3|SPC97_DICDI Spindle pole body component 97 OS=Dictyostelium discoideum GN=spc97
PE=2 SV=2
Length = 1335
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 59/94 (62%), Gaps = 2/94 (2%)
Query: 3 VEWPLSLIFNQKIIGCYQMLFRHLLLCKHVERQLCNVWLCHKSVKTESKSARESYLKSFA 62
V WPLSLI ++K + YQ++FRHL LCKHVE+ L + W H+ ++ S L SF
Sbjct: 926 VGWPLSLIISRKSLIKYQIIFRHLFLCKHVEKVLVDTWSQHQFRRSSYNKPGLSTLLSFT 985
Query: 63 --LRQQMLFCIQNLEYYMMEEVIESNYTHFIKSL 94
LR +M+ +QNLEYYMM EV+E N+ S+
Sbjct: 986 HLLRHRMIHFLQNLEYYMMLEVLEPNWNKMKNSI 1019
Score = 36.6 bits (83), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 116 SVWLCHKSVKTESKSARESYLKSFA--LRQQMLFCIQNLEYYMMEEVIESNYTHFIKSL 172
W H+ ++ S L SF LR +M+ +QNLEYYMM EV+E N+ S+
Sbjct: 961 DTWSQHQFRRSSYNKPGLSTLLSFTHLLRHRMIHFLQNLEYYMMLEVLEPNWNKMKNSI 1019
>sp|Q9UGJ1|GCP4_HUMAN Gamma-tubulin complex component 4 OS=Homo sapiens GN=TUBGCP4 PE=1
SV=1
Length = 667
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 83/173 (47%), Gaps = 28/173 (16%)
Query: 3 VEWPLSLIFNQKIIGCYQMLFRHLLLCKHVERQLCNVWLCHKSVKTESKSARESYLKSFA 62
V+WPL ++F ++ Y ++F++LL + V+ +L + W K KS + +K +
Sbjct: 459 VQWPLHILFTPAVLEKYNVVFKYLLSVRRVQAELQHCWALQMQRK-HLKSNQTDAIK-WR 516
Query: 63 LRQQMLFCIQNLEYYMMEEVIESNYTHFIKSLN------------EHFMMPMKKESIVEL 110
LR M F + NL+YY+ +V+ES ++ + +N +HF+ + +S + L
Sbjct: 517 LRNHMAFLVDNLQYYLQVDVLESQFSQLLHQINSTRDFESIRLAHDHFLSNLLAQSFILL 576
Query: 111 ----YCSNRSVWLCHK---------SVKTESKSARESYL-KSFALRQQMLFCI 149
+C N + LCH E +A+ S L K F+ + +LF I
Sbjct: 577 KPVFHCLNEILDLCHSFCSLVSQNLGPLDERGAAQLSILVKGFSRQSSLLFKI 629
Score = 33.1 bits (74), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 141 LRQQMLFCIQNLEYYMMEEVIESNYTHFIKSLN 173
LR M F + NL+YY+ +V+ES ++ + +N
Sbjct: 517 LRNHMAFLVDNLQYYLQVDVLESQFSQLLHQIN 549
>sp|Q9D4F8|GCP4_MOUSE Gamma-tubulin complex component 4 OS=Mus musculus GN=Tubgcp4 PE=2
SV=2
Length = 667
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 83/173 (47%), Gaps = 28/173 (16%)
Query: 3 VEWPLSLIFNQKIIGCYQMLFRHLLLCKHVERQLCNVWLCHKSVKTESKSARESYLKSFA 62
V+WPL ++F ++ Y ++F++LL + V+ +L + W K KS + +K +
Sbjct: 459 VQWPLHILFTPAVLEKYNVVFKYLLSVRRVQAELQHCWALQMQRK-HLKSNQTDAVK-WR 516
Query: 63 LRQQMLFCIQNLEYYMMEEVIESNYTHFIKSLN------------EHFMMPMKKESIVEL 110
LR M F + NL+YY+ +V+ES ++ + +N +HF+ + +S + L
Sbjct: 517 LRNHMAFLVDNLQYYLQVDVLESQFSQLLHQINSTRDFESIRLAHDHFLSNLLAQSFILL 576
Query: 111 ----YCSNRSVWLCHK---------SVKTESKSARESYL-KSFALRQQMLFCI 149
+C N + LCH E +A+ S L K F+ + +LF I
Sbjct: 577 KPVFHCLNEILDLCHSFCSLVSQNLGPLDERGAAQLSILVKGFSRQSSLLFKI 629
Score = 33.1 bits (74), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 141 LRQQMLFCIQNLEYYMMEEVIESNYTHFIKSLN 173
LR M F + NL+YY+ +V+ES ++ + +N
Sbjct: 517 LRNHMAFLVDNLQYYLQVDVLESQFSQLLHQIN 549
>sp|Q9Y705|ALP4_SCHPO Spindle pole body component alp4 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=alp4 PE=1 SV=1
Length = 784
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 59/97 (60%), Gaps = 5/97 (5%)
Query: 3 VEWPLSLIFNQKIIGCYQMLFRHLLLCKHVERQLCNVWLCH---KSVKTESKSARESYLK 59
V +PLSLI ++K I YQ+LFR+ LL +HVE QL N W+ H + + S +A+ K
Sbjct: 572 VPFPLSLILSRKAIIRYQLLFRYFLLLRHVEMQLENSWVQHSKNSAWRLNSSNAKIEQWK 631
Query: 60 --SFALRQQMLFCIQNLEYYMMEEVIESNYTHFIKSL 94
S+ LR +ML +Q + YY EVIE+++ F+ L
Sbjct: 632 RNSWLLRTRMLSFVQKIIYYTTSEVIETHWGKFMGEL 668
>sp|Q9VKU7|GCP4_DROME Gamma-tubulin complex component 4 homolog OS=Drosophila
melanogaster GN=Grip75 PE=1 SV=2
Length = 650
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 4 EWPLSLIFNQKIIGCYQMLFRHLLLCKHVERQLCNVWLCHKSVKTESKSARESYLKSFAL 63
EWPL+L+F+ I Y +FR LL+ + + ++ VW ++ + +S K L
Sbjct: 434 EWPLNLLFSPTTIERYNNIFRFLLIIRTYQYEIQRVW-AKQTWRAKSAKDVPPNNKIITL 492
Query: 64 RQQMLFCIQNLEYYMMEEVIESNY 87
R ++F + N++YY+ +V+ES +
Sbjct: 493 RNYLMFFLNNMQYYIQVDVLESQF 516
>sp|Q9SC88|GCP4_MEDTR Gamma-tubulin complex component 4 homolog OS=Medicago truncatula
GN=85P PE=2 SV=1
Length = 739
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 55/101 (54%), Gaps = 15/101 (14%)
Query: 3 VEWPLSLIFNQKIIGCYQMLFRHLLLCKHVERQLCNVW---------LCHKSVKTESKSA 53
+EWPL L F Q+++ Y +F++LL K + +L +W + K+ K++ +
Sbjct: 504 IEWPLHLFFTQEVLSRYLKVFQYLLRLKRTQMELEKLWASVMHQYHSIFAKNKKSDQDKS 563
Query: 54 -----RESYLKS-FALRQQMLFCIQNLEYYMMEEVIESNYT 88
R+ +S + +R+ M F I+NL++Y+ +VIES +
Sbjct: 564 PITQQRDQRFRSMWRVREHMAFLIRNLQFYIQVDVIESQWN 604
>sp|Q9M350|GCP4_ARATH Gamma-tubulin complex component 4 homolog OS=Arabidopsis thaliana
GN=At3g53760 PE=2 SV=2
Length = 745
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 50/99 (50%), Gaps = 14/99 (14%)
Query: 3 VEWPLSLIFNQKIIGCYQMLFRHLLLCKHVERQLCNVWLC-----------HKSV---KT 48
V+WP+ L F Q+++ Y +F++L+ K + +L W H+ +
Sbjct: 515 VDWPMQLFFTQEVLSKYLKVFQYLIRLKRTQMELEKSWASVMHQDHIESAQHRKDGLNGS 574
Query: 49 ESKSARESYLKSFALRQQMLFCIQNLEYYMMEEVIESNY 87
S+ R+ + +R+ M F I+NL++Y+ +VIES +
Sbjct: 575 TSQQRRQGIRPMWRVREHMAFLIRNLQFYIQVDVIESQW 613
Score = 30.4 bits (67), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 25/40 (62%)
Query: 126 TESKSARESYLKSFALRQQMLFCIQNLEYYMMEEVIESNY 165
+ S+ R+ + +R+ M F I+NL++Y+ +VIES +
Sbjct: 574 STSQQRRQGIRPMWRVREHMAFLIRNLQFYIQVDVIESQW 613
>sp|Q95ZG4|SPC98_DICDI Spindle pole body component 98 OS=Dictyostelium discoideum GN=spc98
PE=1 SV=2
Length = 813
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Query: 2 YVEWPLSLIFNQKIIGCYQMLFRHLLLCKHVERQLCNVWLCHKSVKTES--KSARESYLK 59
+V+ PL+ I + I Y+ +F + K VE L ++W +S + S K
Sbjct: 585 HVDTPLNTILSPNDILRYKKIFHFMWGIKRVEYSLASIWRKIRSSTSLSILSPIGGDIHK 644
Query: 60 SFALRQQMLFCIQNLEYYMMEEVIESNYTHFIKSLNE 96
S + +M+ I N +YY+M EV+E ++ + K +++
Sbjct: 645 SHLIMNEMVHFISNFQYYLMFEVLECSWKNLEKFIDQ 681
>sp|O73787|GCP3_XENLA Gamma-tubulin complex component 3 homolog OS=Xenopus laevis
GN=tubgcp3 PE=1 SV=1
Length = 906
Score = 33.1 bits (74), Expect = 0.85, Method: Composition-based stats.
Identities = 19/89 (21%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Query: 2 YVEWPLSLIFNQKIIGCYQMLFRHLLLCKHVERQLCNVW---LCHKSVKTESKSARESYL 58
+V+ P++ +F ++ + Y +F L K +E L ++W +C+ +
Sbjct: 642 HVDGPIATVFTRECMSHYLRVFNFLWRAKRMEYILTDIWKGHMCNAKLLKGMPELSGVLH 701
Query: 59 KSFALRQQMLFCIQNLEYYMMEEVIESNY 87
+ L +M+ I ++YY+ EV+E ++
Sbjct: 702 QCHILASEMVHFIHQMQYYITFEVLECSW 730
>sp|Q45EK7|TRM44_CAEEL Probable tRNA (uracil-O(2)-)-methyltransferase OS=Caenorhabditis
elegans GN=C23G10.7 PE=3 SV=1
Length = 563
Score = 31.6 bits (70), Expect = 2.4, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 89 HFIKSLN---EHFMMPMKKESIVELYCSNRSVWLCHKSVKTESKSARESYLKSF 139
F+K N EHF MKK++ +LY + + L S KT S +ESY+K++
Sbjct: 144 QFLKQANSSQEHFEF-MKKQAFKQLYTWLKGIDLSKSSRKTNSLLDKESYIKTY 196
>sp|Q09844|YAE3_SCHPO TBC domain-containing protein C23D3.03c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC23D3.03c PE=4
SV=1
Length = 472
Score = 30.4 bits (67), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 8/108 (7%)
Query: 36 LCNVWLCHKSVKTESKSARESYLKSFALRQQMLFCIQNLEYYMMEEVIESNYTHFIKSLN 95
LCNV L S K+A ES+ K Q + + N++ E V + + + +L
Sbjct: 64 LCNVPLELPSTSNAQKTAAESFSKLSPQDQLLSLQLNNVQ----ESVFQQSTFNLPDALL 119
Query: 96 EHFMMPMKKESIVELYCSNRSVWLCHKSVKTESKSARE-SYLKSFALR 142
+ +K++++ + R WL KS + E K RE +K A+R
Sbjct: 120 DPGPASKEKQAVLSI---GRPSWLPPKSKEEEKKHMREFEQIKKSAMR 164
>sp|B7J0N4|TILS_BORBZ tRNA(Ile)-lysidine synthase OS=Borrelia burgdorferi (strain ZS7)
GN=tilS PE=3 SV=1
Length = 440
Score = 30.4 bits (67), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 73 NLEYYMMEEVIESNYTHFIKSLNEHFMMPMKKESIVELYCSNRSVWLCHKSVKTES 128
NL+YY+ VI + HFI+S NE + +LY + C +K+ES
Sbjct: 42 NLKYYLSNNVIAFYFAHFIRSDNEQNQEIEHVKGFCDLYNIALQIKKCDIDIKSES 97
>sp|O51728|TILS_BORBU tRNA(Ile)-lysidine synthase OS=Borrelia burgdorferi (strain ATCC
35210 / B31 / CIP 102532 / DSM 4680) GN=tilS PE=3 SV=1
Length = 440
Score = 30.4 bits (67), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 73 NLEYYMMEEVIESNYTHFIKSLNEHFMMPMKKESIVELYCSNRSVWLCHKSVKTES 128
NL+YY+ VI + HFI+S NE + +LY + C +K+ES
Sbjct: 42 NLKYYLSNNVIAFYFAHFIRSDNEQNQEIEHVKGFCDLYNIALQIKKCDIDIKSES 97
>sp|Q924W6|TRI66_MOUSE Tripartite motif-containing protein 66 OS=Mus musculus GN=Trim66
PE=1 SV=3
Length = 1242
Score = 30.0 bits (66), Expect = 7.7, Method: Composition-based stats.
Identities = 12/47 (25%), Positives = 23/47 (48%)
Query: 101 PMKKESIVELYCSNRSVWLCHKSVKTESKSARESYLKSFALRQQMLF 147
P+ + +++L+C V CH + E K R +++ Q+ML
Sbjct: 66 PLHTQEVLKLFCETCDVLTCHSCLMVEHKEHRCRHVEEVLQNQRMLL 112
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.133 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,176,655
Number of Sequences: 539616
Number of extensions: 1801077
Number of successful extensions: 5792
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 5740
Number of HSP's gapped (non-prelim): 51
length of query: 174
length of database: 191,569,459
effective HSP length: 109
effective length of query: 65
effective length of database: 132,751,315
effective search space: 8628835475
effective search space used: 8628835475
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (26.6 bits)