Query psy3229
Match_columns 174
No_of_seqs 186 out of 518
Neff 7.2
Searched_HMMs 46136
Date Fri Aug 16 19:40:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3229.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3229hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2001|consensus 99.9 1E-26 2.2E-31 207.7 16.5 142 2-154 513-657 (734)
2 KOG2065|consensus 99.9 3.6E-25 7.7E-30 191.9 9.0 122 2-125 468-608 (679)
3 PF04130 Spc97_Spc98: Spc97 / 99.8 1.8E-20 3.9E-25 165.4 12.5 108 2-109 421-535 (542)
4 KOG2001|consensus 99.6 3.8E-15 8.3E-20 134.0 6.8 65 110-174 538-607 (734)
5 KOG2000|consensus 99.2 1.8E-11 3.8E-16 114.7 7.8 98 2-99 604-710 (879)
6 KOG4344|consensus 99.1 9.8E-10 2.1E-14 99.4 12.1 114 2-115 882-1022(1121)
7 PF04130 Spc97_Spc98: Spc97 / 97.7 4.5E-05 9.7E-10 67.5 4.8 42 133-174 478-519 (542)
8 KOG2000|consensus 96.5 0.0017 3.7E-08 61.8 3.1 44 131-174 664-707 (879)
9 KOG2065|consensus 91.6 0.095 2.1E-06 47.1 1.5 35 139-173 528-562 (679)
10 KOG4344|consensus 62.2 14 0.00031 34.9 4.8 42 132-173 955-996 (1121)
11 KOG1757|consensus 27.9 48 0.001 24.3 2.0 17 147-163 56-72 (131)
12 KOG3841|consensus 21.4 53 0.0012 29.1 1.4 22 141-162 387-412 (455)
No 1
>KOG2001|consensus
Probab=99.95 E-value=1e-26 Score=207.74 Aligned_cols=142 Identities=35% Similarity=0.504 Sum_probs=114.6
Q ss_pred CCCCccceeecHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhHhHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy3229 2 YVEWPLSLIFNQKIIGCYQMLFRHLLLCKHVERQLCNVWLCHKSVKTESKSARESYLKSFALRQQMLFCIQNLEYYMMEE 81 (174)
Q Consensus 2 ~V~wPL~lv~t~~~m~~Yq~iFrfL~~lKrve~~L~~~W~~~~~~~~~~~~~~~~~~~~~~Lr~~M~hFv~~L~~Yl~~d 81 (174)
+|+||||+||++++|.+||.||||+|.+|+||+.|+.+|..+...+..+..+..+.++++.||+||++||.++.||+++|
T Consensus 513 ~vkwPLSlIIsrkal~kYQmLfR~lf~lkhVerqL~~~W~~~~~~r~~~~~~~q~~r~s~~LR~RMl~fiqsi~~Y~~~e 592 (734)
T KOG2001|consen 513 EVKWPLSLIISRKALIKYQMLFRYLFYLKHVERQLCETWQSHSKARSSNTKGAQIVRASFLLRQRMLNFIQSIEYYMTQE 592 (734)
T ss_pred ccCCceeeeEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999988766666677899999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHhccchhhHH---HHHHHhhhhchhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy3229 82 VIESNYTHFIKSLNEHFMMPMKK---ESIVELYCSNRSVWLCHKSVKTESKSARESYLKSFALRQQMLFCIQNLEY 154 (174)
Q Consensus 82 Vie~~w~~l~~~l~~a~~~~~l~---~~f~~~~Cl~~~~~l~~k~~k~~~~~~~~~~~~~~~l~~~ml~f~~~~~~ 154 (174)
||||+|..|.+.+++|..++.+. ++|+ +.|++..+... .....+.-+.|..-|+.|....+-
T Consensus 593 ViEp~W~~l~~~l~~a~~vD~Vl~~he~fl-d~CLk~ClL~~----------~~~llk~~~kL~~vCl~f~~~~q~ 657 (734)
T KOG2001|consen 593 VIEPNWHSLEKCLKNARNVDEVLNEHEGFL-DTCLKRCLLTL----------SPLLLKSFSKLYKVCLMFCSFTQK 657 (734)
T ss_pred hhcchHHHHHHHhhchhhHHHHHHHHHHHH-HHHHHhhccCC----------hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988775544 4555 56664433222 123444455555555555554443
No 2
>KOG2065|consensus
Probab=99.92 E-value=3.6e-25 Score=191.87 Aligned_cols=122 Identities=25% Similarity=0.437 Sum_probs=105.1
Q ss_pred CCCCccceeecHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccch---hhhHhHHHHHHHHHHHHHHHHHHHHHh
Q psy3229 2 YVEWPLSLIFNQKIIGCYQMLFRHLLLCKHVERQLCNVWLCHKSVKTESK---SARESYLKSFALRQQMLFCIQNLEYYM 78 (174)
Q Consensus 2 ~V~wPL~lv~t~~~m~~Yq~iFrfL~~lKrve~~L~~~W~~~~~~~~~~~---~~~~~~~~~~~Lr~~M~hFv~~L~~Yl 78 (174)
+|+||++++|||.++++||.+|+||+.+||++..|+.+|..+|..++... +.++.++ +.+|+.|+++++|||||+
T Consensus 468 ~v~WPl~llFtp~~~e~yn~VF~yLl~irr~Q~Elq~~WA~qm~r~h~~s~q~~d~~~I~--WRlRnhmaFl~~NlQyYi 545 (679)
T KOG2065|consen 468 EVEWPLNLLFTPTTIERYNNVFRYLLIIRRYQYELQRVWAKQMWRAHSASDQPPDNKIIT--WRLRNHMAFLLNNLQYYI 545 (679)
T ss_pred EeccchheeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccch--HHHHHHHHHHHhhhheee
Confidence 68999999999999999999999999999999999999998875433221 1112333 789999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHhccc------------hhhHHHHHHHh----hhhchhhhhhhhhhh
Q psy3229 79 MEEVIESNYTHFIKSLNEHFM------------MPMKKESIVEL----YCSNRSVWLCHKSVK 125 (174)
Q Consensus 79 ~~dVie~~w~~l~~~l~~a~~------------~~~l~~~f~~~----~Cl~~~~~l~~k~~k 125 (174)
++||+|++|+.++..|++..| .+++.|||++. +||..+.-+|+|+|.
T Consensus 546 QVDVlESQf~~L~~~I~s~~DFe~i~~aH~~fLsnllsqsFll~~pV~~~L~~i~~lC~~Fcn 608 (679)
T KOG2065|consen 546 QVDVLESQFGILMNVIKSRSDFEVIQRAHTVFLSNLLSQSFLLNEPVYGTLLKIFGLCEKFCN 608 (679)
T ss_pred eehhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 999999999999999998544 47788899884 999999999999995
No 3
>PF04130 Spc97_Spc98: Spc97 / Spc98 family; InterPro: IPR007259 Members of this family are spindle pole body (SBP) components such as Spc97, Spc98 and gamma-tubulin. The SPB functions as the microtubule-organising centre in yeast, with the microtubule cytoskeleton playing an essential role in chromosome segregation, cellular organisation and vesicle trafficking in eukaryotic cells. In most cells, the centrosome is the primary microtubule-organising centre that nucleates and organises microtubules. Gamma-tubulin localises to centrosomes and is required for microtubule nucleation. In Saccharomyces cerevisiae, gamma-tubulin forms a stable complex with Spc97 and Spc98 [].; GO: 0000226 microtubule cytoskeleton organization, 0000922 spindle pole, 0005815 microtubule organizing center; PDB: 3RIP_A.
Probab=99.84 E-value=1.8e-20 Score=165.41 Aligned_cols=108 Identities=25% Similarity=0.500 Sum_probs=86.4
Q ss_pred CCCCccceeecHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc----chhhhHhHHHHHHHHHHHHHHHHHHHHH
Q psy3229 2 YVEWPLSLIFNQKIIGCYQMLFRHLLLCKHVERQLCNVWLCHKSVKTE----SKSARESYLKSFALRQQMLFCIQNLEYY 77 (174)
Q Consensus 2 ~V~wPL~lv~t~~~m~~Yq~iFrfL~~lKrve~~L~~~W~~~~~~~~~----~~~~~~~~~~~~~Lr~~M~hFv~~L~~Y 77 (174)
+|||||++|||+++|.+|+.||+|||++||+++.|+++|...+..++. ..+..+..++.+.+|++|.||++++++|
T Consensus 421 ~~~~PL~lilt~~~~~~Y~~IF~~Ll~lk~~~~~L~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~m~~fv~~l~~y 500 (542)
T PF04130_consen 421 KVPWPLNLILTPSVMEKYNRIFRFLLQLKRAEWALQSVWRQLRRLSRKFGKPDRQSRPQLRRLQILRHRMQHFVNSLQSY 500 (542)
T ss_dssp ---TTGGGTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSGGG--------S-SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCccHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999988754221 1123356788899999999999999999
Q ss_pred hhhhhhhhhHHHHHHHHHhccchh---hHHHHHHH
Q psy3229 78 MMEEVIESNYTHFIKSLNEHFMMP---MKKESIVE 109 (174)
Q Consensus 78 l~~dVie~~w~~l~~~l~~a~~~~---~l~~~f~~ 109 (174)
++.+||+++|.+|.++++++.+++ ..|+.|++
T Consensus 501 ~~~~vI~~~~~~f~~~l~~~~~~d~l~~~H~~yL~ 535 (542)
T PF04130_consen 501 LQFDVIEPSWSEFMEKLEKAKSLDELIEAHDDYLD 535 (542)
T ss_dssp HHHHTHHHHHHHHHHHHHT---HHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence 999999999999999999987774 45566665
No 4
>KOG2001|consensus
Probab=99.57 E-value=3.8e-15 Score=134.02 Aligned_cols=65 Identities=37% Similarity=0.603 Sum_probs=57.5
Q ss_pred hhhhchhhhhh-----hhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHhhcC
Q psy3229 110 LYCSNRSVWLC-----HKSVKTESKSARESYLKSFALRQQMLFCIQNLEYYMMEEVIESNYTHFIKSLNE 174 (174)
Q Consensus 110 ~~Cl~~~~~l~-----~k~~k~~~~~~~~~~~~~~~l~~~ml~f~~~~~~~~~~ev~e~~~~~~~~~~~~ 174 (174)
+.|.++++.+| ++.++..+...+.|+|++++||+|||+|||+++||||+||||||||.|++.+++
T Consensus 538 f~lkhVerqL~~~W~~~~~~r~~~~~~~q~~r~s~~LR~RMl~fiqsi~~Y~~~eViEp~W~~l~~~l~~ 607 (734)
T KOG2001|consen 538 FYLKHVERQLCETWQSHSKARSSNTKGAQIVRASFLLRQRMLNFIQSIEYYMTQEVIEPNWHSLEKCLKN 607 (734)
T ss_pred HHHHHHHHHHHHHHHhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHhhc
Confidence 38888877554 566777888888999999999999999999999999999999999999998863
No 5
>KOG2000|consensus
Probab=99.24 E-value=1.8e-11 Score=114.67 Aligned_cols=98 Identities=24% Similarity=0.379 Sum_probs=85.6
Q ss_pred CCCCccceeecHhHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhccc----cccc----hhhhHhHHHHHHHHHHHHHHHH
Q psy3229 2 YVEWPLSLIFNQKIIGCYQMLFRHLLLCKHVERQL-CNVWLCHKSV----KTES----KSARESYLKSFALRQQMLFCIQ 72 (174)
Q Consensus 2 ~V~wPL~lv~t~~~m~~Yq~iFrfL~~lKrve~~L-~~~W~~~~~~----~~~~----~~~~~~~~~~~~Lr~~M~hFv~ 72 (174)
.|.-|+++++|++++.+|-+||+|||++||+++.| .++|+..+.. +... ........+++.+.++|.||+.
T Consensus 604 ~v~~p~s~v~t~~~~~~ylrif~flwrlkR~e~~L~~~i~k~~m~~~~~~~~~~~~~i~~~~~~~~r~h~~~~E~~~f~s 683 (879)
T KOG2000|consen 604 AVDGPLSLVLTRELMLKYLRVFNFLWKLKRVEFLLELHIWKMLMKDCNVAKRDRLLKIPEISCALHRCHILTNEMNHFIS 683 (879)
T ss_pred eecccHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccchhcchHHHHhhhhhhhhHHHHHHHHHH
Confidence 36789999999999999999999999999999999 8999998841 1111 1235678899999999999999
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHhccc
Q psy3229 73 NLEYYMMEEVIESNYTHFIKSLNEHFM 99 (174)
Q Consensus 73 ~L~~Yl~~dVie~~w~~l~~~l~~a~~ 99 (174)
++|+|+.++|||.+|+++...+++|.+
T Consensus 684 q~q~y~~f~vie~~wk~l~~~~~~a~~ 710 (879)
T KOG2000|consen 684 QMQYYILFEVIECSWKELSKKMEPARN 710 (879)
T ss_pred hhhhccccchhhcChHHHHHHHhhccC
Confidence 999999999999999999999999755
No 6
>KOG4344|consensus
Probab=99.10 E-value=9.8e-10 Score=99.36 Aligned_cols=114 Identities=20% Similarity=0.195 Sum_probs=90.0
Q ss_pred CCCCccceeecHhHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhccc---ccc--c--------------h-hhhHhHHHH
Q psy3229 2 YVEWPLSLIFNQKIIGCYQMLFRHLLLCKHVERQLCNVW-LCHKSV---KTE--S--------------K-SARESYLKS 60 (174)
Q Consensus 2 ~V~wPL~lv~t~~~m~~Yq~iFrfL~~lKrve~~L~~~W-~~~~~~---~~~--~--------------~-~~~~~~~~~ 60 (174)
.++||..+|+|+++|..|+.+|+.|+++|++.+.|+..- ....+. ++. + . ...-.++|.
T Consensus 882 pmamhqdiiislacmkdYNqVflLlLkiKWAkwkLdnllfgelvsmaekpRakegliheqdtvaqfcapkdliglqIhRl 961 (1121)
T KOG4344|consen 882 PMAMHQDIIISLACMKDYNQVFLLLLKIKWAKWKLDNLLFGELVSMAEKPRAKEGLIHEQDTVAQFCAPKDLIGLQIHRL 961 (1121)
T ss_pred CcccchheEecHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhccccccccccccCCCccchHHHHHHHH
Confidence 379999999999999999999999999999999999842 222110 100 0 0 123468899
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHhccchh---hHHHHHHH---hhhhch
Q psy3229 61 FALRQQMLFCIQNLEYYMMEEVIESNYTHFIKSLNEHFMMP---MKKESIVE---LYCSNR 115 (174)
Q Consensus 61 ~~Lr~~M~hFv~~L~~Yl~~dVie~~w~~l~~~l~~a~~~~---~l~~~f~~---~~Cl~~ 115 (174)
..+|-+++|||+||+.|||.-|+++...+|+.+++++.+.+ ++|...+. ++|+..
T Consensus 962 eilRfkLiffiNnLHahIMeailhStgleFehqieEaKdldeLiiiHdehLatihdhClLr 1022 (1121)
T KOG4344|consen 962 EILRFKLIFFINNLHAHIMEAILHSTGLEFEHQIEEAKDLDELIIIHDEHLATIHDHCLLR 1022 (1121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhcCHHHHHHHHHHHHHHHHHhhhHH
Confidence 99999999999999999999999999999999999998874 44543333 477754
No 7
>PF04130 Spc97_Spc98: Spc97 / Spc98 family; InterPro: IPR007259 Members of this family are spindle pole body (SBP) components such as Spc97, Spc98 and gamma-tubulin. The SPB functions as the microtubule-organising centre in yeast, with the microtubule cytoskeleton playing an essential role in chromosome segregation, cellular organisation and vesicle trafficking in eukaryotic cells. In most cells, the centrosome is the primary microtubule-organising centre that nucleates and organises microtubules. Gamma-tubulin localises to centrosomes and is required for microtubule nucleation. In Saccharomyces cerevisiae, gamma-tubulin forms a stable complex with Spc97 and Spc98 [].; GO: 0000226 microtubule cytoskeleton organization, 0000922 spindle pole, 0005815 microtubule organizing center; PDB: 3RIP_A.
Probab=97.70 E-value=4.5e-05 Score=67.45 Aligned_cols=42 Identities=24% Similarity=0.477 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHhhcC
Q psy3229 133 ESYLKSFALRQQMLFCIQNLEYYMMEEVIESNYTHFIKSLNE 174 (174)
Q Consensus 133 ~~~~~~~~l~~~ml~f~~~~~~~~~~ev~e~~~~~~~~~~~~ 174 (174)
...++.+.+|.+|.+|++++++|++.+||+|+|..|.++|++
T Consensus 478 ~~~~~~~~lr~~m~~fv~~l~~y~~~~vI~~~~~~f~~~l~~ 519 (542)
T PF04130_consen 478 PQLRRLQILRHRMQHFVNSLQSYLQFDVIEPSWSEFMEKLEK 519 (542)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 468889999999999999999999999999999999999863
No 8
>KOG2000|consensus
Probab=96.55 E-value=0.0017 Score=61.84 Aligned_cols=44 Identities=23% Similarity=0.433 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHhhcC
Q psy3229 131 ARESYLKSFALRQQMLFCIQNLEYYMMEEVIESNYTHFIKSLNE 174 (174)
Q Consensus 131 ~~~~~~~~~~l~~~ml~f~~~~~~~~~~ev~e~~~~~~~~~~~~ 174 (174)
....+.++..++.+|.||+.++|||.+|||||-||..+..++++
T Consensus 664 ~~~~~~r~h~~~~E~~~f~sq~q~y~~f~vie~~wk~l~~~~~~ 707 (879)
T KOG2000|consen 664 ISCALHRCHILTNEMNHFISQMQYYILFEVIECSWKELSKKMEP 707 (879)
T ss_pred HHhhhhhhhhHHHHHHHHHHhhhhccccchhhcChHHHHHHHhh
Confidence 34568899999999999999999999999999999999988864
No 9
>KOG2065|consensus
Probab=91.57 E-value=0.095 Score=47.09 Aligned_cols=35 Identities=31% Similarity=0.719 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHhhc
Q psy3229 139 FALRQQMLFCIQNLEYYMMEEVIESNYTHFIKSLN 173 (174)
Q Consensus 139 ~~l~~~ml~f~~~~~~~~~~ev~e~~~~~~~~~~~ 173 (174)
|.||.-|--++.|+|||+-+.|||..|..++..++
T Consensus 528 WRlRnhmaFl~~NlQyYiQVDVlESQf~~L~~~I~ 562 (679)
T KOG2065|consen 528 WRLRNHMAFLLNNLQYYIQVDVLESQFGILMNVIK 562 (679)
T ss_pred HHHHHHHHHHHhhhheeeeehhHHHHHHHHHHHhc
Confidence 88999999999999999999999999999998764
No 10
>KOG4344|consensus
Probab=62.21 E-value=14 Score=34.91 Aligned_cols=42 Identities=24% Similarity=0.326 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHhhc
Q psy3229 132 RESYLKSFALRQQMLFCIQNLEYYMMEEVIESNYTHFIKSLN 173 (174)
Q Consensus 132 ~~~~~~~~~l~~~ml~f~~~~~~~~~~ev~e~~~~~~~~~~~ 173 (174)
+.-++|.+.+|-...+||+|++.|+|.-||-.+=..|+-+++
T Consensus 955 glqIhRleilRfkLiffiNnLHahIMeailhStgleFehqie 996 (1121)
T KOG4344|consen 955 GLQIHRLEILRFKLIFFINNLHAHIMEAILHSTGLEFEHQIE 996 (1121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHh
Confidence 346899999999999999999999999999887777776665
No 11
>KOG1757|consensus
Probab=27.91 E-value=48 Score=24.26 Aligned_cols=17 Identities=24% Similarity=0.313 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHhhcc
Q psy3229 147 FCIQNLEYYMMEEVIES 163 (174)
Q Consensus 147 ~f~~~~~~~~~~ev~e~ 163 (174)
.+...+.-|+|.||||-
T Consensus 56 vy~aaileYLTaEVLeL 72 (131)
T KOG1757|consen 56 VYSAAILEYLTAEVLEL 72 (131)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35566788999999983
No 12
>KOG3841|consensus
Probab=21.37 E-value=53 Score=29.07 Aligned_cols=22 Identities=41% Similarity=0.646 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHH----HHHHHHHhhc
Q psy3229 141 LRQQMLFCIQNL----EYYMMEEVIE 162 (174)
Q Consensus 141 l~~~ml~f~~~~----~~~~~~ev~e 162 (174)
.+-=|.+|+..+ .||||.+|||
T Consensus 387 mceYmiNfi~Klk~lpe~ymmnsvle 412 (455)
T KOG3841|consen 387 MCEYMINFIHKLKHLPEKYMMNSVLE 412 (455)
T ss_pred hHHHHHHHHHHHhcCCcccchhhHhh
Confidence 456799999998 4899999998
Done!