Query psy3229
Match_columns 174
No_of_seqs 186 out of 518
Neff 7.2
Searched_HMMs 29240
Date Fri Aug 16 19:40:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3229.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3229hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rip_A Gamma-tubulin complex c 99.9 4.4E-23 1.5E-27 188.3 16.8 125 2-128 457-597 (677)
2 3rip_A Gamma-tubulin complex c 98.5 6.9E-08 2.4E-12 88.0 6.0 36 139-174 514-549 (677)
3 2jxf_A NS4B(40-69), genome pol 22.9 59 0.002 17.1 2.1 15 142-156 12-26 (30)
4 1oeg_A Apolipoprotein E; siali 15.4 92 0.0032 15.9 1.7 16 82-97 5-20 (26)
5 2oku_A Acyl-COA dehydrogenase 12.5 3.9E+02 0.013 18.9 7.4 27 126-152 90-116 (131)
6 2cwy_A Hypothetical protein TT 12.3 74 0.0025 21.1 1.1 17 152-168 15-31 (94)
7 2bf9_A Pancreatic hormone; tur 11.6 2.1E+02 0.0071 15.7 2.6 16 65-80 15-30 (36)
8 2rf4_B DNA-directed RNA polyme 11.6 1.4E+02 0.0047 19.8 2.2 15 25-39 60-74 (87)
9 3kxe_A Toxin protein PARE-1; c 10.2 3.9E+02 0.013 17.5 5.0 25 4-28 13-37 (110)
10 1bba_A Bovine pancreatic polyp 9.8 2.4E+02 0.0081 15.5 2.4 16 65-80 15-30 (36)
No 1
>3rip_A Gamma-tubulin complex component 4; helix bundles, gamma-tubulin ring complex, gamma-TURC, struc protein; 2.30A {Homo sapiens}
Probab=99.90 E-value=4.4e-23 Score=188.29 Aligned_cols=125 Identities=25% Similarity=0.514 Sum_probs=99.4
Q ss_pred CCCCccceeecHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhHhHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy3229 2 YVEWPLSLIFNQKIIGCYQMLFRHLLLCKHVERQLCNVWLCHKSVKTESKSARESYLKSFALRQQMLFCIQNLEYYMMEE 81 (174)
Q Consensus 2 ~V~wPL~lv~t~~~m~~Yq~iFrfL~~lKrve~~L~~~W~~~~~~~~~~~~~~~~~~~~~~Lr~~M~hFv~~L~~Yl~~d 81 (174)
+|||||++|||+++|.+|+.||||||++||+++.|+++|..++..+..... ....++ +.+|++|+|||+++++|+++|
T Consensus 457 ~v~~PL~liit~~~l~~Y~~iF~~Ll~lkr~~~~L~~~w~~~~~~~~~~~~-~~~~~~-~~lr~~m~~Fv~~l~~Y~~~~ 534 (677)
T 3rip_A 457 KVQWPLHILFTPAVLEKYNVVFKYLLSVRRVQAELQHCWALQMQRKHLKSN-QTDAIK-WRLRNHMAFLVDNLQYYLQVD 534 (677)
T ss_dssp CCCTTGGGTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSGGGCCSS-HHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred eCCChHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC-chhHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999999999999999999999999998765433211 223333 789999999999999999999
Q ss_pred hhhhhHHHHHHHHHhccchhh---HHHHHHHh---hhh----------chhhhhhhhhhhhhc
Q psy3229 82 VIESNYTHFIKSLNEHFMMPM---KKESIVEL---YCS----------NRSVWLCHKSVKTES 128 (174)
Q Consensus 82 Vie~~w~~l~~~l~~a~~~~~---l~~~f~~~---~Cl----------~~~~~l~~k~~k~~~ 128 (174)
|||++|.+|.++++++.+++. .|+.|++. .|+ .+...+|.++|...+
T Consensus 535 Vie~~w~~~~~~l~~~~~~d~l~~~H~~~L~~i~~~c~L~~~~v~~~l~~il~~~~~F~~~~~ 597 (677)
T 3rip_A 535 VLESQFSQLLHQINSTRDFESIRLAHDHFLSNLLAQSFILLKPVFHCLNEILDLCHSFCSLVS 597 (677)
T ss_dssp THHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999877644 44566652 444 334455666666443
No 2
>3rip_A Gamma-tubulin complex component 4; helix bundles, gamma-tubulin ring complex, gamma-TURC, struc protein; 2.30A {Homo sapiens}
Probab=98.55 E-value=6.9e-08 Score=87.99 Aligned_cols=36 Identities=33% Similarity=0.803 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHhhcC
Q psy3229 139 FALRQQMLFCIQNLEYYMMEEVIESNYTHFIKSLNE 174 (174)
Q Consensus 139 ~~l~~~ml~f~~~~~~~~~~ev~e~~~~~~~~~~~~ 174 (174)
+.+|++|++||++++||+++|||||+|+.|++++++
T Consensus 514 ~~lr~~m~~Fv~~l~~Y~~~~Vie~~w~~~~~~l~~ 549 (677)
T 3rip_A 514 WRLRNHMAFLVDNLQYYLQVDVLESQFSQLLHQINS 549 (677)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 899999999999999999999999999999999864
No 3
>2jxf_A NS4B(40-69), genome polyprotein; membrane associated segment, acetylation, apoptosis, ATP- binding, capsid protein, cytoplasm, endoplasmic reticulum; NMR {Synthetic}
Probab=22.95 E-value=59 Score=17.09 Aligned_cols=15 Identities=20% Similarity=0.401 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHH
Q psy3229 142 RQQMLFCIQNLEYYM 156 (174)
Q Consensus 142 ~~~ml~f~~~~~~~~ 156 (174)
.+-|-+||+.+||-.
T Consensus 12 ~khMwNfvSGIQYLa 26 (30)
T 2jxf_A 12 AKHMWNFISGIQYLA 26 (30)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 357999999999953
No 4
>1oeg_A Apolipoprotein E; sialic acid, heparin-binding, repeat, signal, disease mutation, polymorphism; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=15.41 E-value=92 Score=15.94 Aligned_cols=16 Identities=0% Similarity=0.277 Sum_probs=12.8
Q ss_pred hhhhhHHHHHHHHHhc
Q psy3229 82 VIESNYTHFIKSLNEH 97 (174)
Q Consensus 82 Vie~~w~~l~~~l~~a 97 (174)
=|.-+|..+.++++.+
T Consensus 5 ~mr~Q~~~lveKvq~a 20 (26)
T 1oeg_A 5 DMQRQWAGLVEKVQAA 20 (26)
T ss_dssp HTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3667899999998875
No 5
>2oku_A Acyl-COA dehydrogenase family protein; the acyl-COA dehydrogenase, PSI-2, structural genomics, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.48.5.1
Probab=12.47 E-value=3.9e+02 Score=18.91 Aligned_cols=27 Identities=11% Similarity=-0.005 Sum_probs=18.1
Q ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHH
Q psy3229 126 TESKSARESYLKSFALRQQMLFCIQNL 152 (174)
Q Consensus 126 ~~~~~~~~~~~~~~~l~~~ml~f~~~~ 152 (174)
.|......+.+-+-+.-..--+||+|+
T Consensus 90 lf~kSA~Vyv~~ae~ev~k~~~~I~~f 116 (131)
T 2oku_A 90 SFRQSAEVYLRYGQAEQEKIDSYVRAF 116 (131)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHcC
Confidence 354445567777777777777788775
No 6
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=12.32 E-value=74 Score=21.09 Aligned_cols=17 Identities=29% Similarity=0.493 Sum_probs=14.4
Q ss_pred HHHHHHHHhhcccHHHH
Q psy3229 152 LEYYMMEEVIESNYTHF 168 (174)
Q Consensus 152 ~~~~~~~ev~e~~~~~~ 168 (174)
=.||-..||+|+-|..-
T Consensus 15 g~~~eaHEvlE~~W~~~ 31 (94)
T 2cwy_A 15 GRYYEVHEVLEPYWLKA 31 (94)
T ss_dssp TCHHHHHHHHHHHHHHC
T ss_pred CChHHHHHHHHHHHhhC
Confidence 36899999999999864
No 7
>2bf9_A Pancreatic hormone; turkey, pancreas, polypeptide, atomic resolution, anisotropic refinement; HET: TYC; 0.99A {Meleagris gallopavo} SCOP: j.6.1.1 PDB: 1ppt_A 2k76_A 2h3s_B* 2h3t_B* 2h4b_C*
Probab=11.60 E-value=2.1e+02 Score=15.74 Aligned_cols=16 Identities=13% Similarity=0.353 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHhhh
Q psy3229 65 QQMLFCIQNLEYYMME 80 (174)
Q Consensus 65 ~~M~hFv~~L~~Yl~~ 80 (174)
.+|..+..+|+.|+..
T Consensus 15 Eela~Y~~~LrhYiNl 30 (36)
T 2bf9_A 15 EDLIRFYNDLQQYLNV 30 (36)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4677888888888764
No 8
>2rf4_B DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=11.58 E-value=1.4e+02 Score=19.82 Aligned_cols=15 Identities=13% Similarity=0.290 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHH
Q psy3229 25 HLLLCKHVERQLCNV 39 (174)
Q Consensus 25 fL~~lKrve~~L~~~ 39 (174)
-|-+|||+|+.|...
T Consensus 60 ~LsQLKRvQRdlrGL 74 (87)
T 2rf4_B 60 SISQLKRIQRDFKGL 74 (87)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhcCC
Confidence 678999999998653
No 9
>3kxe_A Toxin protein PARE-1; complex, TA system, protein binding; 2.60A {Caulobacter crescentus NA1000}
Probab=10.19 E-value=3.9e+02 Score=17.48 Aligned_cols=25 Identities=0% Similarity=-0.156 Sum_probs=20.3
Q ss_pred CCccceeecHhHHHHHHHHHHHHHH
Q psy3229 4 EWPLSLIFNQKIIGCYQMLFRHLLL 28 (174)
Q Consensus 4 ~wPL~lv~t~~~m~~Yq~iFrfL~~ 28 (174)
+-|-.+++|+++......|+.|+..
T Consensus 13 ~~~~~V~~t~~A~~DL~~I~~yi~~ 37 (110)
T 3kxe_A 13 DPMKPYRLSRRAKADLDDIWTYSEQ 37 (110)
T ss_dssp ---CCEEEEHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECHHHHHHHHHHHHHHHh
Confidence 4578899999999999999999874
No 10
>1bba_A Bovine pancreatic polypeptide; pancreatic hormone; NMR {Bos taurus} SCOP: j.6.1.1 PDB: 1ljv_A 1tz5_A 1v1d_A
Probab=9.82 E-value=2.4e+02 Score=15.50 Aligned_cols=16 Identities=25% Similarity=0.273 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHhhh
Q psy3229 65 QQMLFCIQNLEYYMME 80 (174)
Q Consensus 65 ~~M~hFv~~L~~Yl~~ 80 (174)
.+|..+...|+.|+..
T Consensus 15 Eela~Y~~~Lr~YiNl 30 (36)
T 1bba_A 15 EQMAQYAAELRRYINM 30 (36)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3567788888888753
Done!