Query psy3229
Match_columns 174
No_of_seqs 186 out of 518
Neff 7.2
Searched_HMMs 13730
Date Fri Aug 16 19:40:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3229.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/3229hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1u35c1 a.22.1.1 (C:814-919) m 14.4 42 0.003 21.5 2.0 19 148-166 37-55 (106)
2 d3ctaa2 b.43.5.2 (A:90-220) CT 10.8 68 0.005 21.2 2.3 20 3-22 37-58 (131)
3 d1tzya_ a.22.1.1 (A:) Histone 9.5 99 0.0072 19.5 2.7 24 69-92 37-60 (106)
4 d2cwya1 a.246.2.1 (A:1-94) Hyp 8.9 54 0.004 20.2 1.1 18 150-167 13-30 (94)
5 d1f66c_ a.22.1.1 (C:) Histone 7.3 1.1E+02 0.0077 19.2 2.0 18 150-167 40-57 (103)
6 d1c07a_ a.39.1.6 (A:) Eps15 {H 7.1 1E+02 0.0073 18.3 1.8 17 10-26 3-19 (95)
7 d1b0nb_ a.34.1.1 (B:) SinI ant 6.0 1.5E+02 0.011 14.0 1.7 12 11-22 19-30 (31)
8 d1dvka_ a.72.1.1 (A:) Function 5.2 86 0.0063 21.6 0.6 8 2-9 112-119 (169)
9 d1iq3a_ a.39.1.6 (A:) Pob1 {Hu 5.2 1.4E+02 0.01 18.3 1.7 17 10-26 15-31 (110)
10 d1jhga_ a.4.12.1 (A:) Trp repr 5.0 2.3E+02 0.017 17.5 2.6 32 83-115 8-39 (101)
No 1
>d1u35c1 a.22.1.1 (C:814-919) macro-H2A.1, histone domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.35 E-value=42 Score=21.47 Aligned_cols=19 Identities=16% Similarity=0.315 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHhhcccHH
Q psy3229 148 CIQNLEYYMMEEVIESNYT 166 (174)
Q Consensus 148 f~~~~~~~~~~ev~e~~~~ 166 (174)
|.....=|++.||||-...
T Consensus 37 ylaAVLEYL~aEILELAgn 55 (106)
T d1u35c1 37 YMAAVLEYLTAEILELAVN 55 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4444677999999996543
No 2
>d3ctaa2 b.43.5.2 (A:90-220) CTP-dependent riboflavin kinase, Rfk {Thermoplasma acidophilum [TaxId: 2303]}
Probab=10.79 E-value=68 Score=21.18 Aligned_cols=20 Identities=10% Similarity=0.233 Sum_probs=15.2
Q ss_pred CCCc--cceeecHhHHHHHHHH
Q psy3229 3 VEWP--LSLIFNQKIIGCYQML 22 (174)
Q Consensus 3 V~wP--L~lv~t~~~m~~Yq~i 22 (174)
.||| ||+-+.++.++.|..+
T Consensus 37 ~P~PGTLNv~l~~~~~~~~~~l 58 (131)
T d3ctaa2 37 IPYLGTLNIKVDQASLPELRKI 58 (131)
T ss_dssp CCCC---EEEECGGGHHHHHHH
T ss_pred CCCCCcEEEEEcchhhHHHHHh
Confidence 4788 9999999988877654
No 3
>d1tzya_ a.22.1.1 (A:) Histone H2A {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]}
Probab=9.52 E-value=99 Score=19.53 Aligned_cols=24 Identities=13% Similarity=0.146 Sum_probs=19.5
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHH
Q psy3229 69 FCIQNLEYYMMEEVIESNYTHFIK 92 (174)
Q Consensus 69 hFv~~L~~Yl~~dVie~~w~~l~~ 92 (174)
-|+..+..|++.||+|-.+..-.+
T Consensus 37 VylaAVLEYLtaEiLELAgn~a~~ 60 (106)
T d1tzya_ 37 VYLAAVLEYLTAEILELAGNAARD 60 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHh
Confidence 466778999999999999876543
No 4
>d2cwya1 a.246.2.1 (A:1-94) Hypothetical protein TTHA0068 {Thermus thermophilus [TaxId: 274]}
Probab=8.88 E-value=54 Score=20.19 Aligned_cols=18 Identities=28% Similarity=0.530 Sum_probs=14.8
Q ss_pred HHHHHHHHHHhhcccHHH
Q psy3229 150 QNLEYYMMEEVIESNYTH 167 (174)
Q Consensus 150 ~~~~~~~~~ev~e~~~~~ 167 (174)
+.=.||=..||+|.-|..
T Consensus 13 n~g~y~eaHE~lE~~W~~ 30 (94)
T d2cwya1 13 RAGRYYEVHEVLEPYWLK 30 (94)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHhh
Confidence 334699999999999975
No 5
>d1f66c_ a.22.1.1 (C:) Histone H2A {Human (Homo sapiens), variant H2A.Z [TaxId: 9606]}
Probab=7.28 E-value=1.1e+02 Score=19.19 Aligned_cols=18 Identities=22% Similarity=0.252 Sum_probs=12.8
Q ss_pred HHHHHHHHHHhhcccHHH
Q psy3229 150 QNLEYYMMEEVIESNYTH 167 (174)
Q Consensus 150 ~~~~~~~~~ev~e~~~~~ 167 (174)
....=|++.||||-....
T Consensus 40 aAvLEYL~aEILelagn~ 57 (103)
T d1f66c_ 40 AAILEYLTAEVLELAGNA 57 (103)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 335668999999876543
No 6
>d1c07a_ a.39.1.6 (A:) Eps15 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.14 E-value=1e+02 Score=18.28 Aligned_cols=17 Identities=12% Similarity=0.198 Sum_probs=14.0
Q ss_pred eecHhHHHHHHHHHHHH
Q psy3229 10 IFNQKIIGCYQMLFRHL 26 (174)
Q Consensus 10 v~t~~~m~~Yq~iFrfL 26 (174)
++|++-..+|..+|+.+
T Consensus 3 ~lt~~e~~~~~~~F~~~ 19 (95)
T d1c07a_ 3 VVSPAEKAKYDEIFLKT 19 (95)
T ss_dssp SSCSHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 57888888999998875
No 7
>d1b0nb_ a.34.1.1 (B:) SinI anti-repressor {Bacillus subtilis [TaxId: 1423]}
Probab=6.01 E-value=1.5e+02 Score=13.99 Aligned_cols=12 Identities=25% Similarity=0.373 Sum_probs=9.0
Q ss_pred ecHhHHHHHHHH
Q psy3229 11 FNQKIIGCYQML 22 (174)
Q Consensus 11 ~t~~~m~~Yq~i 22 (174)
|+|+-+.+|-.+
T Consensus 19 ispeeirkylll 30 (31)
T d1b0nb_ 19 ISPEEIRKYLLL 30 (31)
T ss_dssp CCHHHHHHHHHH
T ss_pred CCHHHHHHHHhc
Confidence 678888888653
No 8
>d1dvka_ a.72.1.1 (A:) Functional domain of the splicing factor Prp18 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.22 E-value=86 Score=21.62 Aligned_cols=8 Identities=38% Similarity=1.199 Sum_probs=4.6
Q ss_pred CCCCccce
Q psy3229 2 YVEWPLSL 9 (174)
Q Consensus 2 ~V~wPL~l 9 (174)
+++||+++
T Consensus 112 NA~WPIGV 119 (169)
T d1dvka_ 112 NVAWPIGV 119 (169)
T ss_dssp BCCCCSCC
T ss_pred CCCCccce
Confidence 35666664
No 9
>d1iq3a_ a.39.1.6 (A:) Pob1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.18 E-value=1.4e+02 Score=18.27 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=14.3
Q ss_pred eecHhHHHHHHHHHHHH
Q psy3229 10 IFNQKIIGCYQMLFRHL 26 (174)
Q Consensus 10 v~t~~~m~~Yq~iFrfL 26 (174)
.+|++-...|+.+|+.+
T Consensus 15 ~lt~ee~~~y~~lF~~~ 31 (110)
T d1iq3a_ 15 RITEEQREYYVNQFRSL 31 (110)
T ss_dssp CCSSSSHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHh
Confidence 68898999999999753
No 10
>d1jhga_ a.4.12.1 (A:) Trp repressor, TrpR {Escherichia coli [TaxId: 562]}
Probab=4.97 E-value=2.3e+02 Score=17.49 Aligned_cols=32 Identities=9% Similarity=0.272 Sum_probs=21.3
Q ss_pred hhhhHHHHHHHHHhccchhhHHHHHHHhhhhch
Q psy3229 83 IESNYTHFIKSLNEHFMMPMKKESIVELYCSNR 115 (174)
Q Consensus 83 ie~~w~~l~~~l~~a~~~~~l~~~f~~~~Cl~~ 115 (174)
-.++|..|.+.+.++.+.+.+.. |+.+-|-.+
T Consensus 8 ~~~~w~~f~~ll~~~~~~~~~~~-fl~dLlT~~ 39 (101)
T d1jhga_ 8 RHQEWLRFVDLLKNAYQNDLHLP-LLNLMLTPD 39 (101)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHH-HHHHHSCHH
T ss_pred hhhHHHHHHHHHHHccCHHHHHH-HHHHhCCHH
Confidence 35789999999998877655444 555444333
Done!