RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy3229
         (174 letters)



>gnl|CDD|217915 pfam04130, Spc97_Spc98, Spc97 / Spc98 family.  The spindle pole
           body (SPB) functions as the microtubule-organising
           centre in yeast. Members of this family are spindle pole
           body (SBP) components such as Spc97 and Spc98 that form
           a complex with gamma-tubulin. This family of proteins
           includes the grip motif 1 and grip moti 2.
          Length = 528

 Score = 93.0 bits (231), Expect = 1e-22
 Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 2/96 (2%)

Query: 3   VEWPLSLIFNQKIIGCYQMLFRHLLLCKHVERQLCNVWLCHKSVKTESKSARESYL--KS 60
           V WPLSLI   + +  YQ +FR LL  K  E  L  +W      +    + R   L  K 
Sbjct: 410 VPWPLSLILTPEALKKYQRIFRFLLRLKRAEYLLNKLWKELNKRRRLGSTRRNEPLLRKI 469

Query: 61  FALRQQMLFCIQNLEYYMMEEVIESNYTHFIKSLNE 96
           + LR QML  + +L+YY+  +VIESN+    + L +
Sbjct: 470 WLLRFQMLHFVNSLQYYIQVDVIESNWQKLQEQLQK 505



 Score = 49.4 bits (118), Expect = 2e-07
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 116 SVWLCHKSVKTESKSARESYL--KSFALRQQMLFCIQNLEYYMMEEVIESNYTHFIKSLN 173
            +W      +    + R   L  K + LR QML  + +L+YY+  +VIESN+    + L 
Sbjct: 445 KLWKELNKRRRLGSTRRNEPLLRKIWLLRFQMLHFVNSLQYYIQVDVIESNWQKLQEQLQ 504

Query: 174 E 174
           +
Sbjct: 505 K 505


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.325    0.133    0.408 

Gapped
Lambda     K      H
   0.267   0.0734    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,287,815
Number of extensions: 695700
Number of successful extensions: 679
Number of sequences better than 10.0: 1
Number of HSP's gapped: 678
Number of HSP's successfully gapped: 15
Length of query: 174
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 84
Effective length of database: 6,945,742
Effective search space: 583442328
Effective search space used: 583442328
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (25.3 bits)