RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy3229
         (174 letters)



>3rip_A Gamma-tubulin complex component 4; helix bundles, gamma-tubulin
           ring complex, gamma-TURC, struc protein; 2.30A {Homo
           sapiens}
          Length = 677

 Score = 73.9 bits (180), Expect = 4e-16
 Identities = 25/94 (26%), Positives = 51/94 (54%), Gaps = 2/94 (2%)

Query: 3   VEWPLSLIFNQKIIGCYQMLFRHLLLCKHVERQLCNVWLCHKSVKTESKSARESYLKSFA 62
           V+WPL ++F   ++  Y ++F++LL  + V+ +L + W      K     + ++    + 
Sbjct: 458 VQWPLHILFTPAVLEKYNVVFKYLLSVRRVQAELQHCWALQMQRK--HLKSNQTDAIKWR 515

Query: 63  LRQQMLFCIQNLEYYMMEEVIESNYTHFIKSLNE 96
           LR  M F + NL+YY+  +V+ES ++  +  +N 
Sbjct: 516 LRNHMAFLVDNLQYYLQVDVLESQFSQLLHQINS 549



 Score = 36.1 bits (82), Expect = 0.004
 Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 116 SVWLCHKSVKTESKSARESYLKSFALRQQMLFCIQNLEYYMMEEVIESNYTHFIKSLNE 174
             W      K     + ++    + LR  M F + NL+YY+  +V+ES ++  +  +N 
Sbjct: 493 HCWALQMQRK--HLKSNQTDAIKWRLRNHMAFLVDNLQYYLQVDVLESQFSQLLHQINS 549


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 37.9 bits (87), Expect = 0.001
 Identities = 24/143 (16%), Positives = 49/143 (34%), Gaps = 21/143 (14%)

Query: 12  NQKIIGCYQMLFRHLLLCKHVERQLCNVWLCHKSVK--TESKSARESYLKSF-ALRQQML 68
            + I+  ++  F     CK V+    ++ L  + +     SK A    L+ F  L  +  
Sbjct: 18  YKDILSVFEDAFVDNFDCKDVQDMPKSI-LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ- 75

Query: 69  FCIQNLEYYMMEEVIESNYTHFIKSLNEHFMMPMKKESIVELYCSNRSVWLCHKSVKTES 128
              + +    +EEV+  NY   +  +      P     +  +Y   R   L + +     
Sbjct: 76  ---EEMVQKFVEEVLRINYKFLMSPIKTEQRQP---SMMTRMYIEQRDR-LYNDN----- 123

Query: 129 KSARESYLKSFALRQQMLFCIQN 151
               + + K    R Q    ++ 
Sbjct: 124 ----QVFAKYNVSRLQPYLKLRQ 142



 Score = 27.1 bits (59), Expect = 4.4
 Identities = 22/104 (21%), Positives = 38/104 (36%), Gaps = 20/104 (19%)

Query: 76  YYMMEEVIESNYTHFIKSLNEHFMMPMKKESIVELYCSN-----RSVWLCHKSVK--TES 128
           ++M  E  E  Y +  K +   F             C +     +S+ L  + +     S
Sbjct: 5   HHMDFETGEHQYQY--KDILSVFEDAFVDN----FDCKDVQDMPKSI-LSKEEIDHIIMS 57

Query: 129 KSARESYLKSF-ALRQQMLFCIQNLEYYMMEEVIESNYTHFIKS 171
           K A    L+ F  L  +     + +    +EEV+  NY  F+ S
Sbjct: 58  KDAVSGTLRLFWTLLSKQ----EEMVQKFVEEVLRINYK-FLMS 96


>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase;
           2.80A {Homo sapiens}
          Length = 425

 Score = 25.6 bits (56), Expect = 9.4
 Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 2/43 (4%)

Query: 77  YMMEEVIESN-YTHFIKSLNEHFMMPMKKESI-VELYCSNRSV 117
            + + + E+   T F +   E   +  + E I +E  C   + 
Sbjct: 63  CIFQLLQEAGIKTAFTRKCGETAFIAPQCEMIPIEWVCRRIAT 105


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.325    0.133    0.408 

Gapped
Lambda     K      H
   0.267   0.0472    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,435,129
Number of extensions: 118536
Number of successful extensions: 231
Number of sequences better than 10.0: 1
Number of HSP's gapped: 229
Number of HSP's successfully gapped: 23
Length of query: 174
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 87
Effective length of database: 4,272,666
Effective search space: 371721942
Effective search space used: 371721942
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (25.2 bits)