RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3229
         (174 letters)



>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 244

 Score = 25.7 bits (56), Expect = 2.9
 Identities = 12/80 (15%), Positives = 24/80 (30%), Gaps = 3/80 (3%)

Query: 65  QQMLFCIQNLEYYMMEEVIESNYT---HFIKSLNEHFMMPMKKESIVELYCSNRSVWLCH 121
             +L     +     +   E N        + +    +      +IV +        + +
Sbjct: 86  VALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAVTN 145

Query: 122 KSVKTESKSARESYLKSFAL 141
            SV   +K A +   K  AL
Sbjct: 146 HSVYCSTKGALDMLTKVMAL 165


>d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium
           thermoautotrophicum [TaxId: 145262]}
          Length = 295

 Score = 25.7 bits (56), Expect = 3.6
 Identities = 12/78 (15%), Positives = 24/78 (30%), Gaps = 5/78 (6%)

Query: 82  VIESNYTHFIKSLNEHFMMPMKKESIVELYCSNRSVWLCHKSVKTESKSARESYLKSFAL 141
           V+E +    + S+ E    P     +  LY  +  V    + ++    S R         
Sbjct: 148 VVEFDSEGRVISIEEKPSRPKSNYVVPGLYFYDNQVVEIARRIE---PSDRGEL--EITS 202

Query: 142 RQQMLFCIQNLEYYMMEE 159
             +    +  L   +M  
Sbjct: 203 VNEEYLRMGKLRVELMGR 220


>d1v5ma_ b.55.1.1 (A:) SH2 and PH domain-containing adapter protein
           APS {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 136

 Score = 24.8 bits (53), Expect = 4.7
 Identities = 10/89 (11%), Positives = 28/89 (31%), Gaps = 7/89 (7%)

Query: 40  WLCHKSVK--TESKSARESYLKS-FALRQQMLFCIQNLEYYMMEEVIESNYTHFIKSLNE 96
            L                 + K    LR+ +      LE+++  +      +  + ++ E
Sbjct: 23  ALRFMVADDAASGPGGTAQWQKCRLLLRRAVAGERFRLEFFVPPKASRPKVSIPLSAIIE 82

Query: 97  HF----MMPMKKESIVELYCSNRSVWLCH 121
                 +   +K++   L   N + ++  
Sbjct: 83  VRTTMPLEMPEKDNTFVLKVENGAEYILE 111


>d2p82a1 d.3.1.22 (A:26-359) Cysteine protease ATG4A {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 334

 Score = 24.2 bits (52), Expect = 9.2
 Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 6/64 (9%)

Query: 18  CYQMLFRHLLLCKHVERQLCNVWLCHKSVKTESKSARESYLKSFALRQQMLFCIQNLEYY 77
           C QM+    L+C+H+ R     W   K    E +      L+ F  R+   + I  +   
Sbjct: 56  CGQMMLAQALICRHLGRDW--SWEKQKEQPKEYQ----RILQCFLDRKDCCYSIHQMAQM 109

Query: 78  MMEE 81
            + E
Sbjct: 110 GVGE 113


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.133    0.408 

Gapped
Lambda     K      H
   0.267   0.0552    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 621,886
Number of extensions: 25330
Number of successful extensions: 99
Number of sequences better than 10.0: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 28
Length of query: 174
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 95
Effective length of database: 1,322,926
Effective search space: 125677970
Effective search space used: 125677970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.4 bits)