Query psy3230
Match_columns 151
No_of_seqs 109 out of 819
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 19:43:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3230.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3230hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xzm_K RPS14E; ribosome, trans 100.0 5E-61 1.7E-65 371.5 13.9 150 1-151 1-151 (151)
2 3u5c_O RP59A, 40S ribosomal pr 100.0 6.3E-57 2.2E-61 343.8 9.2 134 18-151 4-137 (137)
3 3j20_M 30S ribosomal protein S 100.0 8E-53 2.8E-57 321.1 15.8 130 22-151 8-137 (137)
4 3r8n_K 30S ribosomal protein S 100.0 2.9E-50 9.8E-55 300.0 14.4 115 25-148 3-117 (117)
5 2vqe_K 30S ribosomal protein S 100.0 3E-49 1E-53 298.8 13.8 115 25-148 13-127 (129)
6 3bbn_K Ribosomal protein S11; 100.0 1.2E-48 4.1E-53 299.0 11.6 117 23-148 24-140 (140)
7 3v2d_S 50S ribosomal protein L 96.9 0.0071 2.4E-07 44.1 9.4 88 28-126 23-112 (112)
8 3r8s_O 50S ribosomal protein L 96.8 0.011 3.7E-07 43.3 9.1 92 27-125 21-115 (116)
9 1vq8_N 50S ribosomal protein L 96.7 0.02 6.7E-07 45.2 10.8 93 28-126 32-130 (187)
10 3j21_O 50S ribosomal protein L 96.1 0.0094 3.2E-07 47.6 5.7 99 28-143 32-139 (203)
11 1ovy_A 50S ribosomal protein L 95.9 0.012 4.2E-07 43.3 5.2 93 26-125 26-119 (120)
12 2zjr_L 50S ribosomal protein L 95.3 0.0093 3.2E-07 43.6 2.7 89 27-126 25-114 (114)
13 2zkr_n 60S ribosomal protein L 94.8 0.27 9.4E-06 41.2 10.6 102 27-144 47-182 (297)
14 3bbo_Q Ribosomal protein L18; 94.3 0.036 1.2E-06 42.8 3.9 91 28-125 65-160 (161)
15 3u5e_D 60S ribosomal protein L 92.0 1.2 4.3E-05 37.2 9.9 104 27-143 47-181 (297)
16 4a17_M RPL5, 60S ribosomal pro 91.5 1.2 4.1E-05 37.4 9.3 105 27-144 47-182 (301)
17 3iz5_Q 60S ribosomal protein L 86.8 2.7 9.2E-05 35.3 8.1 96 36-144 57-182 (304)
18 4e0a_A BH1408 protein; structu 71.2 18 0.0006 23.9 6.9 57 68-136 101-157 (164)
19 3eo4_A Uncharacterized protein 52.5 49 0.0017 22.1 6.8 50 68-129 103-152 (164)
20 1mp9_A Tata-binding protein; t 48.6 43 0.0015 26.0 6.2 50 38-91 48-97 (198)
21 2jlm_A Putative phosphinothric 48.0 67 0.0023 22.4 7.0 49 69-129 104-152 (182)
22 2zqe_A MUTS2 protein; alpha/be 47.6 58 0.002 21.5 8.3 53 70-132 13-67 (83)
23 1ytb_A Protein (tata binding p 47.4 29 0.00098 26.6 4.9 50 37-90 39-88 (180)
24 3eik_A Tata-box-binding protei 46.6 28 0.00096 27.6 4.9 48 39-90 79-126 (218)
25 1ais_A TBP, protein (tata-bind 46.6 36 0.0012 26.0 5.4 49 39-91 45-93 (182)
26 3qd7_X Uncharacterized protein 46.4 67 0.0023 23.3 6.6 28 70-97 56-83 (137)
27 2ge3_A Probable acetyltransfer 46.3 60 0.0021 21.9 6.2 52 68-131 98-149 (170)
28 1vhs_A Similar to phosphinothr 45.8 59 0.002 22.5 6.1 50 68-129 94-143 (175)
29 2j8m_A Acetyltransferase PA486 45.5 69 0.0024 21.7 7.2 50 68-129 95-144 (172)
30 2ae6_A Acetyltransferase, GNAT 45.1 70 0.0024 21.7 6.9 52 68-131 94-145 (166)
31 2z8u_A Tata-box-binding protei 44.6 27 0.00092 26.9 4.4 50 38-91 48-97 (188)
32 3g8w_A Lactococcal prophage PS 42.2 73 0.0025 21.1 7.2 50 69-130 95-144 (169)
33 3pzj_A Probable acetyltransfer 41.4 75 0.0026 22.5 6.3 50 68-129 132-181 (209)
34 3f8k_A Protein acetyltransfera 41.4 73 0.0025 20.9 6.3 48 69-128 87-134 (160)
35 3d8p_A Acetyltransferase of GN 41.3 72 0.0025 20.8 6.8 50 68-129 91-140 (163)
36 1on0_A YYCN protein; structura 41.2 40 0.0014 22.9 4.6 47 69-127 102-148 (158)
37 2cy2_A TTHA1209, probable acet 41.1 73 0.0025 20.8 7.2 50 70-131 103-152 (174)
38 3ngf_A AP endonuclease, family 40.1 45 0.0015 25.3 5.1 43 79-130 26-68 (269)
39 1rm1_A Tata-box binding protei 40.1 75 0.0026 25.4 6.5 49 39-91 101-149 (240)
40 2i79_A Acetyltransferase, GNAT 39.8 86 0.0029 21.2 7.2 50 69-130 100-150 (172)
41 3fix_A N-acetyltransferase; te 39.1 90 0.0031 21.2 6.2 50 68-129 123-172 (183)
42 2q02_A Putative cytoplasmic pr 38.4 80 0.0027 23.5 6.2 50 79-130 22-71 (272)
43 2jvf_A De novo protein M7; tet 38.3 38 0.0013 23.0 3.8 26 73-98 61-86 (96)
44 3dr6_A YNCA; acetyltransferase 38.3 82 0.0028 20.5 7.1 51 69-131 96-146 (174)
45 1vp8_A Hypothetical protein AF 37.8 50 0.0017 26.0 5.0 47 77-134 31-77 (201)
46 2fe7_A Probable N-acetyltransf 37.5 85 0.0029 20.5 5.8 47 68-126 101-147 (166)
47 3kws_A Putative sugar isomeras 37.5 30 0.001 26.5 3.7 44 79-130 41-84 (287)
48 1z4e_A Transcriptional regulat 37.3 86 0.0029 20.6 5.7 50 68-129 98-147 (153)
49 3igr_A Ribosomal-protein-S5-al 36.8 94 0.0032 20.8 7.4 51 68-130 108-159 (184)
50 2g8y_A Malate/L-lactate dehydr 36.8 1.9E+02 0.0067 24.4 11.2 88 46-142 88-180 (385)
51 3pp9_A Putative streptothricin 36.6 99 0.0034 21.0 6.9 52 68-131 113-164 (187)
52 2oh1_A Acetyltransferase, GNAT 36.6 93 0.0032 20.7 6.8 50 69-130 117-166 (179)
53 1mk4_A Hypothetical protein YQ 36.5 87 0.003 20.3 6.1 49 68-128 81-129 (157)
54 3i0p_A Malate dehydrogenase; a 36.5 1.9E+02 0.0065 24.2 11.1 88 46-142 69-159 (365)
55 1tiq_A Protease synthase and s 36.3 1E+02 0.0036 21.2 7.1 50 70-131 105-154 (180)
56 2eui_A Probable acetyltransfer 36.0 83 0.0029 20.0 5.3 47 68-126 91-137 (153)
57 3i9s_A Integron cassette prote 35.7 93 0.0032 21.1 5.8 47 69-127 117-163 (183)
58 3qxb_A Putative xylose isomera 35.2 71 0.0024 24.8 5.6 43 80-130 39-90 (316)
59 1s3z_A Aminoglycoside 6'-N-ace 35.0 98 0.0033 20.5 7.7 47 70-128 110-156 (165)
60 1u6m_A Acetyltransferase, GNAT 34.9 78 0.0027 22.3 5.4 52 68-131 125-176 (199)
61 2q7b_A Acetyltransferase, GNAT 34.8 1.1E+02 0.0037 21.0 6.3 47 71-129 113-159 (181)
62 3obe_A Sugar phosphate isomera 34.6 95 0.0032 24.3 6.3 51 78-130 38-96 (305)
63 2i6c_A Putative acetyltransfer 34.5 94 0.0032 20.1 6.9 52 68-131 88-140 (160)
64 4evy_A Aminoglycoside N(6')-ac 34.2 1E+02 0.0036 20.6 6.5 49 68-128 108-156 (166)
65 2x7b_A N-acetyltransferase SSO 34.0 1.1E+02 0.0038 20.8 7.0 52 68-131 100-152 (168)
66 2dxq_A AGR_C_4057P, acetyltran 33.7 1E+02 0.0036 20.4 6.3 45 69-125 95-139 (150)
67 1yr0_A AGR_C_1654P, phosphinot 33.5 1.1E+02 0.0038 20.7 6.9 50 68-129 96-145 (175)
68 2z10_A Ribosomal-protein-alani 33.0 1.2E+02 0.004 20.8 6.0 52 68-131 101-153 (194)
69 2r1i_A GCN5-related N-acetyltr 32.0 1.1E+02 0.0036 20.2 5.5 45 71-127 113-157 (172)
70 2zvr_A Uncharacterized protein 31.8 53 0.0018 25.1 4.3 46 79-131 44-89 (290)
71 2x06_A L-sulfolactate dehydrog 31.7 2.2E+02 0.0076 23.6 10.3 88 46-142 62-152 (344)
72 2fia_A Acetyltransferase; stru 31.3 1.1E+02 0.0036 19.8 6.7 51 70-132 90-140 (162)
73 2b5g_A Diamine acetyltransfera 31.3 1.1E+02 0.0039 20.1 5.7 46 70-127 103-148 (171)
74 3aoe_E Glutamate dehydrogenase 29.8 64 0.0022 27.8 4.8 61 65-134 192-252 (419)
75 3lod_A Putative acyl-COA N-acy 29.8 1.2E+02 0.004 19.8 6.0 49 68-128 87-135 (162)
76 2r48_A Phosphotransferase syst 29.4 63 0.0021 22.7 3.9 26 74-100 18-43 (106)
77 1i60_A IOLI protein; beta barr 29.4 78 0.0027 23.5 4.8 50 79-131 17-67 (278)
78 1k77_A EC1530, hypothetical pr 29.1 56 0.0019 24.3 3.9 42 80-130 19-60 (260)
79 2cnt_A Modification of 30S rib 28.7 1.3E+02 0.0045 20.0 6.5 48 70-129 78-125 (160)
80 2vzy_A RV0802C; transferase, G 28.3 1.6E+02 0.0053 20.7 7.2 51 69-131 119-170 (218)
81 4h8a_A Ureidoglycolate dehydro 28.3 2.5E+02 0.0087 23.2 11.8 88 46-142 64-154 (339)
82 2r4q_A Phosphotransferase syst 28.2 63 0.0022 22.7 3.8 26 74-100 18-43 (106)
83 2bei_A Diamine acetyltransfera 28.0 1.4E+02 0.005 20.3 6.1 47 68-126 101-147 (170)
84 3g9k_S Capsule biosynthesis pr 27.8 45 0.0015 25.2 3.2 18 40-57 2-19 (177)
85 3owc_A Probable acetyltransfer 27.5 1.4E+02 0.0048 19.9 7.2 48 71-130 109-157 (188)
86 2zds_A Putative DNA-binding pr 27.1 1.4E+02 0.0046 23.1 6.0 46 79-130 18-71 (340)
87 1ufh_A YYCN protein; alpha and 26.9 1.2E+02 0.004 20.4 5.0 46 70-127 127-172 (180)
88 3h4q_A Putative acetyltransfer 26.8 67 0.0023 22.0 3.8 49 72-132 120-168 (188)
89 1yvk_A Hypothetical protein BS 26.8 1.5E+02 0.0052 20.1 7.0 50 69-130 77-126 (163)
90 1rfm_A L-sulfolactate dehydrog 26.7 2.7E+02 0.0094 23.0 10.4 88 46-142 62-152 (344)
91 2kyr_A Fructose-like phosphotr 26.7 84 0.0029 22.2 4.2 26 74-100 21-46 (111)
92 3ur8_A Glucan endo-1,3-beta-D- 25.9 85 0.0029 26.0 4.8 34 81-127 20-53 (323)
93 1yk3_A Hypothetical protein RV 25.6 1.4E+02 0.0048 21.6 5.6 50 71-132 142-193 (210)
94 1yre_A Hypothetical protein PA 25.4 1.6E+02 0.0056 20.0 6.5 51 68-130 109-160 (197)
95 4ava_A Lysine acetyltransferas 25.4 1.5E+02 0.0052 22.8 6.0 48 68-127 245-292 (333)
96 2bue_A AAC(6')-IB; GNAT, trans 25.2 1.6E+02 0.0055 19.9 6.2 50 70-131 129-179 (202)
97 2m1z_A LMO0427 protein; homolo 25.2 83 0.0028 22.0 3.9 26 74-100 18-43 (106)
98 3ktc_A Xylose isomerase; putat 25.0 1.4E+02 0.0049 23.4 5.8 46 79-131 36-82 (333)
99 1s7k_A Acetyl transferase; GNA 25.0 1.5E+02 0.0052 19.5 7.2 52 68-131 108-160 (182)
100 3fau_A NEDD4-binding protein 2 24.9 1.4E+02 0.0048 19.1 6.5 52 70-128 9-71 (82)
101 2g0w_A LMO2234 protein; putati 24.6 1.3E+02 0.0045 23.0 5.5 50 79-130 39-88 (296)
102 2fsr_A Acetyltransferase; alph 24.3 1.8E+02 0.0063 20.2 6.0 49 68-128 124-173 (195)
103 3aog_A Glutamate dehydrogenase 24.2 64 0.0022 28.0 3.8 63 65-137 209-272 (440)
104 3uoe_A Dehydrogenase; structur 24.1 3.2E+02 0.011 22.9 10.6 88 46-142 85-175 (357)
105 1v9n_A Malate dehydrogenase; r 23.9 3.2E+02 0.011 22.8 11.6 88 46-142 73-163 (360)
106 3l23_A Sugar phosphate isomera 23.8 1E+02 0.0035 24.0 4.8 48 79-130 32-79 (303)
107 3k92_A NAD-GDH, NAD-specific g 23.7 58 0.002 28.2 3.4 60 65-134 195-255 (424)
108 1ghe_A Acetyltransferase; acyl 23.5 1.6E+02 0.0055 19.2 6.6 50 68-130 103-152 (177)
109 1nsl_A Probable acetyltransfer 23.4 1.7E+02 0.0057 19.4 6.2 51 68-130 106-157 (184)
110 1y9k_A IAA acetyltransferase; 23.3 1.6E+02 0.0056 19.3 6.7 50 70-131 76-125 (157)
111 1wtj_A Ureidoglycolate dehydro 23.0 3.2E+02 0.011 22.6 11.2 88 46-142 72-162 (343)
112 3juw_A Probable GNAT-family ac 22.8 1.7E+02 0.0058 19.3 6.3 53 68-132 110-163 (175)
113 1auu_A SACY; antitermination, 22.7 82 0.0028 19.5 3.1 30 33-64 3-32 (55)
114 1qsm_A HPA2 histone acetyltran 22.5 95 0.0033 19.8 3.7 44 70-125 98-141 (152)
115 1nxu_A Hypothetical oxidoreduc 22.3 3.3E+02 0.011 22.4 11.8 88 46-142 62-152 (333)
116 4a4y_A Protein MXIG; protein b 22.1 96 0.0033 22.4 3.8 24 28-52 84-107 (146)
117 3fbu_A Acetyltransferase, GNAT 22.1 1.7E+02 0.0059 19.1 7.7 50 68-129 95-145 (168)
118 1z2i_A Malate dehydrogenase; s 21.9 3.5E+02 0.012 22.5 11.7 88 46-142 71-161 (358)
119 2cyg_A Beta-1, 3-glucananse; e 21.7 1.2E+02 0.0041 24.8 4.9 33 82-127 19-51 (312)
120 3a11_A Translation initiation 21.7 1.1E+02 0.0036 25.4 4.5 51 76-133 152-202 (338)
121 2fck_A Ribosomal-protein-serin 21.6 1.8E+02 0.0062 19.2 7.7 47 71-129 113-160 (181)
122 1xrh_A Ureidoglycolate dehydro 21.6 3.5E+02 0.012 22.4 10.5 88 46-142 64-154 (351)
123 2pdo_A Acetyltransferase YPEA; 21.5 1.8E+02 0.006 19.0 6.1 46 69-126 83-128 (144)
124 3hst_B Protein RV2228C/MT2287; 21.2 1.9E+02 0.0066 19.4 5.9 29 69-97 44-73 (141)
125 1aq0_A 1,3-1,4-beta-glucanase; 20.6 1.2E+02 0.004 24.8 4.6 34 81-127 18-51 (306)
126 3lmz_A Putative sugar isomeras 20.4 1.8E+02 0.0063 21.6 5.4 44 79-130 33-81 (257)
127 2d2r_A Undecaprenyl pyrophosph 20.4 2E+02 0.0069 22.8 5.8 58 73-137 43-116 (245)
128 4h89_A GCN5-related N-acetyltr 20.3 2.1E+02 0.0073 19.4 5.9 52 69-131 102-154 (173)
129 3dsb_A Putative acetyltransfer 20.2 1.8E+02 0.006 18.5 5.3 47 69-127 98-145 (157)
130 1wwz_A Hypothetical protein PH 20.1 2E+02 0.007 19.2 6.3 47 70-129 100-146 (159)
No 1
>2xzm_K RPS14E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_K 3j0o_K 3j0l_K 2zkq_k 3iz6_K 3jyv_K*
Probab=100.00 E-value=5e-61 Score=371.46 Aligned_cols=150 Identities=73% Similarity=1.118 Sum_probs=136.4
Q ss_pred CCCCCCcccceeeEEecCce-eeccceeeeEEEEEccCCCeEEEEEcCCCCEEEEEecccceeeccCCCCCHHHHHHHHH
Q psy3230 1 MAPRKGKVQKEEVLVSLGPQ-VKEGEDVFGVAHIFASFNDTFVHVTDLSGRETIARITGGMKVKADRDEASPYAAMLAAQ 79 (151)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~gi~hI~~t~NNTiitlTD~~G~~~~~~sSgg~g~k~~~rK~t~~Aa~~aa~ 79 (151)
|||+++++ +++++++|+|| +.++++.+|++||++|+|||||||||++|++++||+|||++||++++|+||||||+||+
T Consensus 1 ~~~~~~~~-~~~~~~~~~p~~~~~~~~~~gi~hI~asfNNTiVtiTD~~G~~~~~~ssgg~~~k~~r~ksTpyAAq~aa~ 79 (151)
T 2xzm_K 1 MAPKKTAP-VQKEVISYGPPNVGANENVFGVCHIMATWNDTFIHVTDLSGRETLVRVTGGMKVKADREESSPYAAMQAAI 79 (151)
T ss_dssp ------------CCCCCSCSCCCTTCCCEEEEEEEBCSSCBCCEEECTTCCSEEEECCHHHHCSSGGGGSCHHHHHHHHH
T ss_pred CCCccccc-cccceeecCCccccCCCeeeeEEEEEccCCCEEEEEECCCCCEEEEEecCcceEeCCCCcCCHHHHHHHHH
Confidence 89999988 77788999999 99999999999999999999999999999988999999999999988999999999999
Q ss_pred HHHHHHHHcCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeEEEEEecCCCCCCCCCCCCCCCCCCC
Q psy3230 80 DVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIGRIEDVTPIPSDSTRRKGGRRGRRL 151 (151)
Q Consensus 80 ~~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~~I~D~TpiphNGCRpkK~RR~~~~ 151 (151)
+++++|+++||+.|+|+|+|+||++.||+|+||++||++|+.+|++|.+|+|+||||||||||||+||+||+
T Consensus 80 ~~a~~a~e~Gi~~v~V~vkG~gg~~~kgpG~GresairaL~~~GlkI~~I~DvTpiPhNGcRp~K~RRvr~~ 151 (151)
T 2xzm_K 80 DVVNRCKELKINALHIKLRAKGGVETKQPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRREGGRRGRRL 151 (151)
T ss_dssp HHHHHHHHHTCCEEEEEEECCCTTSCCSCCSHHHHHHHHHHHTSCEEEEEEECCCCCSSCCCCSSCTTCSCC
T ss_pred HHHHHHHHcCCeEEEEEEEcCCCCCccCCCccHHHHHHHHHHCCCEEEEEEEeCCCCCCCCCCCCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999996
No 2
>3u5c_O RP59A, 40S ribosomal protein S14-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_K 3o30_H 3o2z_H 3u5g_O 1s1h_K 3jyv_K*
Probab=100.00 E-value=6.3e-57 Score=343.81 Aligned_cols=134 Identities=80% Similarity=1.223 Sum_probs=124.6
Q ss_pred CceeeccceeeeEEEEEccCCCeEEEEEcCCCCEEEEEecccceeeccCCCCCHHHHHHHHHHHHHHHHHcCceEEEEEE
Q psy3230 18 GPQVKEGEDVFGVAHIFASFNDTFVHVTDLSGRETIARITGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKL 97 (151)
Q Consensus 18 ~~~~~~~~~~~gi~hI~~t~NNTiitlTD~~G~~~~~~sSgg~g~k~~~rK~t~~Aa~~aa~~~~~k~~~~gi~~v~V~v 97 (151)
-+|++|+++++|++||++|+||||||+||++|++++|+|||+++||++++|+||||||+||++++++|+++||+.|+|+|
T Consensus 4 ~~~~~~~~~~~gi~hI~asfNNTivtvTD~~G~~~~~~ssG~~gfKg~r~ksTpyAAq~aa~~~a~~a~e~Gi~~v~V~v 83 (137)
T 3u5c_O 4 VVQARDNSQVFGVARIYASFNDTFVHVTDLSGKETIARVTGGMKVKADRDESSPYAAMLAAQDVAAKCKEVGITAVHVKI 83 (137)
T ss_dssp -------CCCEEECCEEEETTEEEECCEETTSSSCCCCCBTTTTSCCSTTTTCHHHHHHHHHHHHHHHHHHTCCEEECEE
T ss_pred cceeccCceeeEEEEEEccCCCEEEEEEcCCCCEEEEEeCCCcEEeCCcccCCHHHHHHHHHHHHHHHHHcCCeEEEEEE
Confidence 47899999999999999999999999999999998899999999999887999999999999999999999999999999
Q ss_pred EecCCCcccCCCCChHHHHHHHHhCCCeEEEEEecCCCCCCCCCCCCCCCCCCC
Q psy3230 98 RATGGNRTKTPGPGAQSALRALARSNMKIGRIEDVTPIPSDSTRRKGGRRGRRL 151 (151)
Q Consensus 98 r~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~~I~D~TpiphNGCRpkK~RR~~~~ 151 (151)
||+||++.||||+||+++||+|+.+|++|.+|+|+||||||||||||+||+|||
T Consensus 84 ra~gg~~~kgpG~Gr~sairaL~~~Gl~I~~I~DvTpiPhnGcRp~K~RR~~~~ 137 (137)
T 3u5c_O 84 RATGGTRTKTPGPGGQAALRALARSGLRIGRIEDVTPVPSDSTRKKGGRRGRRL 137 (137)
T ss_dssp ECSCTTSCCSCCGGGHHHHHHHHTTTCEECCCEECCCCCSSCSCCTTCTTCCCC
T ss_pred eccCCCcccCCCcchHHHHHHHHhCCCEEEEEEEcCCCCCCCCCCCCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999996
No 3
>3j20_M 30S ribosomal protein S11P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=8e-53 Score=321.15 Aligned_cols=130 Identities=62% Similarity=1.050 Sum_probs=121.5
Q ss_pred eccceeeeEEEEEccCCCeEEEEEcCCCCEEEEEecccceeeccCCCCCHHHHHHHHHHHHHHHHHcCceEEEEEEEecC
Q psy3230 22 KEGEDVFGVAHIFASFNDTFVHVTDLSGRETIARITGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATG 101 (151)
Q Consensus 22 ~~~~~~~gi~hI~~t~NNTiitlTD~~G~~~~~~sSgg~g~k~~~rK~t~~Aa~~aa~~~~~k~~~~gi~~v~V~vr~~~ 101 (151)
.|+++.+|++||++|+|||||||||++|+.+++|+|||+.+|++++|+||||||+||++++++|+++||+.|+|+|+|+|
T Consensus 8 ~~~~~~~gi~hI~asfNNTivtiTD~~G~~~i~~~S~G~~gfkg~~ksTp~AA~~aa~~~~~~a~e~Gi~~v~V~vkG~g 87 (137)
T 3j20_M 8 IKKKEKWGIAHIYSSFNNTIIHITDITGAETISRWSGGMVVKADRDEPSPYAAMLAARRAAEEALEKGIVGVHIRVRAPG 87 (137)
T ss_dssp CSSCCEEEEEEEEECSSCEEEEEEESSSCSEEEEEEGGGTCSCTTTSSSHHHHHHHHHHHHHHHHHHTEEEEEEEEECCC
T ss_pred hccCCcceEEEEEcCCCCEEEEEEcCCCCEEEEEEccceeeecCCccCCHHHHHHHHHHHHHHHHHcCCeEEEEEEECCC
Confidence 35567999999999999999999999997457888998755555679999999999999999999999999999999999
Q ss_pred CCcccCCCCChHHHHHHHHhCCCeEEEEEecCCCCCCCCCCCCCCCCCCC
Q psy3230 102 GNRTKTPGPGAQSALRALARSNMKIGRIEDVTPIPSDSTRRKGGRRGRRL 151 (151)
Q Consensus 102 g~~~kG~G~Gr~~~ik~L~~~gl~I~~I~D~TpiphNGCRpkK~RR~~~~ 151 (151)
|++.|-||+||+++|++|+.+|++|.+|+|+|||||||||||+.||+|||
T Consensus 88 g~~~~~pG~GresairaL~~~Gl~I~~I~DvTpiPhnGcRp~g~rr~rrv 137 (137)
T 3j20_M 88 GSKSKTPGPGAQAAIRALARAGLKIGRVEDVTPIPHDGTRPKGGRRGRRV 137 (137)
T ss_dssp SSSCCSCCTHHHHHHHHHHHHTCEEEEEEECCCCCSSCCCCSCCSSSSCC
T ss_pred CCCCcCCCCcHHHHHHHHHhCCCEEEEEEEcCCCCCCCCCCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999997
No 4
>3r8n_K 30S ribosomal protein S11; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_K 3fih_K* 3iy8_K 3j18_K* 2wwl_K 3oar_K 3oaq_K 3ofb_K 3ofa_K 3ofp_K 3ofx_K 3ofy_K 3ofo_K 3r8o_K 4a2i_K 4gd1_K 4gd2_K 3i1m_K 1vs7_K* 3e1a_C ...
Probab=100.00 E-value=2.9e-50 Score=299.97 Aligned_cols=115 Identities=41% Similarity=0.631 Sum_probs=107.3
Q ss_pred ceeeeEEEEEccCCCeEEEEEcCCCCEEEEEecccceeeccCCCCCHHHHHHHHHHHHHHHHHcCceEEEEEEEecCCCc
Q psy3230 25 EDVFGVAHIFASFNDTFVHVTDLSGRETIARITGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNR 104 (151)
Q Consensus 25 ~~~~gi~hI~~t~NNTiitlTD~~G~~~~~~sSgg~g~k~~~rK~t~~Aa~~aa~~~~~k~~~~gi~~v~V~vr~~~g~~ 104 (151)
.+..|++||++|+||||||+||++|+++.|+|+|++|||+.+ |+||||||+||++++++|+++||+.|+|+|
T Consensus 3 ~~~~gi~hI~as~NNTivtiTD~~G~~i~~~S~G~~gfKg~r-k~tp~AA~~aa~~~~~~~~~~Gi~~v~v~v------- 74 (117)
T 3r8n_K 3 QVSDGVAHIHASFNNTIVTITDRQGNALGWATAGGSGFRGSR-KSTPFAAQVAAERCADAVKEYGIKNLEVMV------- 74 (117)
T ss_dssp CCCEEEEEEEECSSCEEEEEECTTSCCSEEEETGGGSCCGGG-GSSHHHHHHHHHHHHHHHTTSCCCEEEEEE-------
T ss_pred ccceeEEEEEcccCCEEEEEEcCCCCEEEEEcCCccccCCCc-cCCHHHHHHHHHHHHHHHHHhCCcEEEEEE-------
Confidence 477899999999999999999999998655555567999865 999999999999999999999999999999
Q ss_pred ccCCCCChHHHHHHHHhCCCeEEEEEecCCCCCCCCCCCCCCCC
Q psy3230 105 TKTPGPGAQSALRALARSNMKIGRIEDVTPIPSDSTRRKGGRRG 148 (151)
Q Consensus 105 ~kG~G~Gr~~~ik~L~~~gl~I~~I~D~TpiphNGCRpkK~RR~ 148 (151)
+|||+||+++|++|+.+|++|.+|+|+||+|||||||||+||+
T Consensus 75 -kG~G~Gr~~airaL~~~Gl~I~~I~DvTpiphnGcRp~K~RRv 117 (117)
T 3r8n_K 75 -KGPGPGRESTIRALNAAGFRITNITDVTPIPHNGCRPPKKRRV 117 (117)
T ss_dssp -ECSSSSTTHHHHHHHHTTCEEEEEEECCCCCSSCSCCCCCCCC
T ss_pred -eCCCccHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCCCCCCCC
Confidence 7999999999999999999999999999999999999999985
No 5
>2vqe_K 30S ribosomal protein S11, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.55.4.1 PDB: 1gix_N* 1hnw_K* 1hnx_K* 1hnz_K* 1hr0_K 1ibk_K* 1ibl_K* 1ibm_K 1j5e_K 1jgo_N* 1jgp_N* 1jgq_N* 1ml5_N* 1n32_K* 1n33_K* 1n34_K 1n36_K 1xmo_K* 1xmq_K* 1xnq_K* ...
Probab=100.00 E-value=3e-49 Score=298.84 Aligned_cols=115 Identities=35% Similarity=0.509 Sum_probs=107.8
Q ss_pred ceeeeEEEEEccCCCeEEEEEcCCCCEEEEEecccceeeccCCCCCHHHHHHHHHHHHHHHHHcCceEEEEEEEecCCCc
Q psy3230 25 EDVFGVAHIFASFNDTFVHVTDLSGRETIARITGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNR 104 (151)
Q Consensus 25 ~~~~gi~hI~~t~NNTiitlTD~~G~~~~~~sSgg~g~k~~~rK~t~~Aa~~aa~~~~~k~~~~gi~~v~V~vr~~~g~~ 104 (151)
.+..|++||++|+|||||||||++|+++.|+|+|++||++++ |+||||||+||++++++|+++||+.|+|+|
T Consensus 13 ~~~~gi~hI~as~NNTivtiTd~~G~~~~~~SaG~~gfKg~r-k~tp~AA~~aa~~~~~~~~~~Gi~~v~V~v------- 84 (129)
T 2vqe_K 13 QVASGRAYIHASYNNTIVTITDPDGNPITWSSGGVIGYKGSR-KGTPYAAQLAALDAAKKAMAYGMQSVDVIV------- 84 (129)
T ss_dssp CCSEEEEEEEECSSCEEEEEECTTSCEEEECCTTTTTCCSGG-GGSHHHHHHHHHHHHHHHHTTTCCEEEEEE-------
T ss_pred cccceEEEEEecCCCEEEEEEcCCCCEEEEEeccceeEcCCC-cCCHHHHHHHHHHHHHHHHHhCCeEEEEEE-------
Confidence 367899999999999999999999998766656668999875 999999999999999999999999999999
Q ss_pred ccCCCCChHHHHHHHHhCCCeEEEEEecCCCCCCCCCCCCCCCC
Q psy3230 105 TKTPGPGAQSALRALARSNMKIGRIEDVTPIPSDSTRRKGGRRG 148 (151)
Q Consensus 105 ~kG~G~Gr~~~ik~L~~~gl~I~~I~D~TpiphNGCRpkK~RR~ 148 (151)
+|+|+||+++|++|+.+|++|.+|+|+||+|||||||||+||+
T Consensus 85 -kG~G~Gre~airaL~~~Gl~I~~I~DvTpiPhnGcRp~K~RRv 127 (129)
T 2vqe_K 85 -RGTGAGREQAIRALQASGLQVKSIVDDTPVPHNGCRPKKKFRK 127 (129)
T ss_dssp -ESCCTTHHHHHHHHHTSSSEEEECEECCCCCSSCSCCCGGGCS
T ss_pred -ECCCCCHHHHHHHHHHCCCEEEEEEEcCCCCCCCCCCCCCCCC
Confidence 7999999999999999999999999999999999999999886
No 6
>3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=1.2e-48 Score=299.04 Aligned_cols=117 Identities=33% Similarity=0.495 Sum_probs=109.2
Q ss_pred ccceeeeEEEEEccCCCeEEEEEcCCCCEEEEEecccceeeccCCCCCHHHHHHHHHHHHHHHHHcCceEEEEEEEecCC
Q psy3230 23 EGEDVFGVAHIFASFNDTFVHVTDLSGRETIARITGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGG 102 (151)
Q Consensus 23 ~~~~~~gi~hI~~t~NNTiitlTD~~G~~~~~~sSgg~g~k~~~rK~t~~Aa~~aa~~~~~k~~~~gi~~v~V~vr~~~g 102 (151)
++.+..|++||++|+|||||||||++|+++.|+|+|++|||+++ |+||||||+||++++++|+|+||+.|+|+|
T Consensus 24 ~k~~~~gi~hI~as~NNTivtiTD~~G~~i~~~SaG~~GfKg~r-ksTp~AA~~aa~~~~~~a~e~Gi~~v~V~v----- 97 (140)
T 3bbn_K 24 ARKIPKGVIHVQASFNNTIVTVTDVRGRVVSWASAGTCGFRGTK-RGTPFAAQTAAGNAIRTVVEQGMQRAEVMI----- 97 (140)
T ss_dssp CCCCCCCEEEEEECSSCEEEEEECSSSCEEEEEETTTSSCCTTS-CSSHHHHHHHHTSGGGTSTTTCCCEEEEEE-----
T ss_pred cccceeeEEEEEecCCCEEEEEEcCCCCEEEEEeccceeEcccc-cCCHHHHHHHHHHHHHHHHHhCCeEEEEEE-----
Confidence 33477899999999999999999999999766666668999875 999999999999999999999999999999
Q ss_pred CcccCCCCChHHHHHHHHhCCCeEEEEEecCCCCCCCCCCCCCCCC
Q psy3230 103 NRTKTPGPGAQSALRALARSNMKIGRIEDVTPIPSDSTRRKGGRRG 148 (151)
Q Consensus 103 ~~~kG~G~Gr~~~ik~L~~~gl~I~~I~D~TpiphNGCRpkK~RR~ 148 (151)
+|+|+||+++|++|+.+|++|.+|+|+||+|||||||||+||+
T Consensus 98 ---kG~G~GReaairaL~~~Gl~I~~I~DvTpiPhnGcRppK~RRv 140 (140)
T 3bbn_K 98 ---KGPGLGRDAALRAIRRSGILLSFVRDVTPMPHNGCRPPKKRRV 140 (140)
T ss_dssp ---ESCSTTSSHHHHHHHTTTCEEEEEEECCCCCCSCCCCCCCCCC
T ss_pred ---ECCCCcHHHHHHHHHHCCCEEEEEEEcCCCCCCCCCCCCCCCC
Confidence 7999999999999999999999999999999999999999885
No 7
>3v2d_S 50S ribosomal protein L18; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_M 2hgj_R 2hgq_R 2hgu_R 1vsa_M 2j03_S 2jl6_S 2jl8_S 2v47_S 2v49_S 2wdi_S 2wdj_S 2wdl_S 2wdn_S 2wh2_S 2wh4_S 2wrj_S 2wrl_S 2wro_S 2wrr_S ...
Probab=96.94 E-value=0.0071 Score=44.13 Aligned_cols=88 Identities=17% Similarity=0.250 Sum_probs=63.2
Q ss_pred eeEEEEEccCCCeEEEEEcCCCCEEEEEecc-cceeeccCCCCCHHHHHHHHHHHHHHHHHcCceEEEEEEEecCCCccc
Q psy3230 28 FGVAHIFASFNDTFVHVTDLSGRETIARITG-GMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTK 106 (151)
Q Consensus 28 ~gi~hI~~t~NNTiitlTD~~G~~~~~~sSg-g~g~k~~~rK~t~~Aa~~aa~~~~~k~~~~gi~~v~V~vr~~~g~~~k 106 (151)
.+.+.|+.|.++++..+.|..|..+++..|. -..++ .+...||+.+++.++++|.+.||+.|..-. +|....
T Consensus 23 rpRL~V~rSnkhiyAQiidd~~~~tlasAsT~e~~~k----~~n~~AA~~vG~llA~ra~~~GI~~vvfDr---gg~~yh 95 (112)
T 3v2d_S 23 RLRLSVFRSLKHIYAQIIDDEKGVTLVSASSLALKLK----GNKTEVARQVGRALAEKALALGIKQVAFDR---GPYKYH 95 (112)
T ss_dssp CCEEEEEECSSCEEEEEEETTTTEEEEEEETTTTTCC----CCHHHHHHHHHHHHHHHHHTTTCCBCEEEC---TTSCSC
T ss_pred CCEEEEEEeCCeEEEEEEecCCCeEEEEEEecchhcc----CCCHHHHHHHHHHHHHHHHHCCCCEEEEec---CCCccc
Confidence 7889999999999999998877665554443 33443 234568889999999999999999885542 333332
Q ss_pred CCCCCh-HHHHHHHHhCCCeE
Q psy3230 107 TPGPGA-QSALRALARSNMKI 126 (151)
Q Consensus 107 G~G~Gr-~~~ik~L~~~gl~I 126 (151)
|| .++..++...||++
T Consensus 96 ----GrV~Ala~~are~GL~f 112 (112)
T 3v2d_S 96 ----GRVKALAEGAREGGLEF 112 (112)
T ss_dssp ----SSTTHHHHHHHHTTCBC
T ss_pred ----HHHHHHHHHHHHcCCCC
Confidence 34 45667777888863
No 8
>3r8s_O 50S ribosomal protein L18; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_O 3j19_O 2wwq_O 3oat_O* 3oas_O* 3ofd_O 3ofc_O 3ofr_O* 3ofz_O* 3og0_O 3ofq_O 3r8t_O 3i1n_O 1p85_M 1p86_M 1vs8_O 1vs6_O 2aw4_O 2awb_O 1vt2_O ...
Probab=96.76 E-value=0.011 Score=43.29 Aligned_cols=92 Identities=14% Similarity=0.148 Sum_probs=62.4
Q ss_pred eeeEEEEEccCCCeEEEEEcCCCCEEEEEeccc-ceeecc-CCCCCHHHHHHHHHHHHHHHHHcCceEEEEEEEecCCCc
Q psy3230 27 VFGVAHIFASFNDTFVHVTDLSGRETIARITGG-MKVKAD-RDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNR 104 (151)
Q Consensus 27 ~~gi~hI~~t~NNTiitlTD~~G~~~~~~sSgg-~g~k~~-~rK~t~~Aa~~aa~~~~~k~~~~gi~~v~V~vr~~~g~~ 104 (151)
..+.+.|+.|.+++...|.|..+..+++..|.- ...++. ...+...||+.+++.++++|.+.||+.|..-. +|..
T Consensus 21 ~rpRL~V~rSnkhIyAQiidd~~g~tlasAST~e~~~~~~~~~~~n~~AA~~vG~llA~Ral~~GI~~vvfDr---gg~~ 97 (116)
T 3r8s_O 21 GATRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDR---SGFQ 97 (116)
T ss_dssp TCCEEEEEECSSCEEEEEECTTSSCEEEECCSSSHHHHTTCSCSSSHHHHHHHHHHHHHHHHTTTCCCCEEEC---TTSC
T ss_pred CCCEEEEEEeCCEEEEEEEEcCCCeEEEEEeeCchhhccccCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEec---CCCc
Confidence 468889999999999999997765545444433 333321 11335568889999999999999999877553 3333
Q ss_pred ccCCCCChH-HHHHHHHhCCCe
Q psy3230 105 TKTPGPGAQ-SALRALARSNMK 125 (151)
Q Consensus 105 ~kG~G~Gr~-~~ik~L~~~gl~ 125 (151)
. -||- ++..++...||+
T Consensus 98 y----hGrV~Ala~~are~Gl~ 115 (116)
T 3r8s_O 98 Y----HGRVQALADAAREAGLQ 115 (116)
T ss_dssp S----SSHHHHHHHHHHHTTCC
T ss_pred c----cHHHHHHHHHHHHhCCC
Confidence 3 2343 355666677875
No 9
>1vq8_N 50S ribosomal protein L18P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.55.4.1 PDB: 1vq4_N* 1vq5_N* 1vq6_N* 1vq7_N* 1s72_N* 1vq9_N* 1vqk_N* 1vql_N* 1vqm_N* 1vqn_N* 1vqo_N* 1vqp_N* 1yhq_N* 1yi2_N* 1yij_N* 1yit_N* 1yj9_N* 1yjn_N* 1yjw_N* 2otj_N* ...
Probab=96.69 E-value=0.02 Score=45.22 Aligned_cols=93 Identities=12% Similarity=0.104 Sum_probs=63.5
Q ss_pred eeEEEEEccCCCeEEEEE--cCCCCEEEEEeccc-ceeeccC--CCCCHHHHHHHHHHHHHHHHHcCceEEEEEEEecCC
Q psy3230 28 FGVAHIFASFNDTFVHVT--DLSGRETIARITGG-MKVKADR--DEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGG 102 (151)
Q Consensus 28 ~gi~hI~~t~NNTiitlT--D~~G~~~~~~sSgg-~g~k~~~--rK~t~~Aa~~aa~~~~~k~~~~gi~~v~V~vr~~~g 102 (151)
.+.+.|+.|.+++++.|. |..|..+++..|.- .. +.+- ..+..-||+.+++.++++|.+.|+..+.+-. ||
T Consensus 32 rpRL~V~rSnkhIyAQII~~dd~~~~tlasAsT~e~~-k~~~k~~~~N~~AA~~vG~llA~Ral~kGI~~vvfDr---gg 107 (187)
T 1vq8_N 32 KPRLVARKSNKHVRAQLVTLGPNGDDTLASAHSSDLA-EYGWEAPTGNMPSAYLTGLLAGLRAQEAGVEEAVLDI---GL 107 (187)
T ss_dssp SCEEEEEECSSCEEEEEEECCTTSCEEEEEEESGGGG-GGTCCSCSSSHHHHHHHHHHHHHHHHHTTCCBCEEEC---TT
T ss_pred CCEEEEEEeCCcEEEEEEEecCCCCEEEEEEEccchh-ccccccCCCcHHHHHHHHHHHHHHHHHCCCCEEEEcC---CC
Confidence 378899999999999999 77777655554442 33 2111 1345568889999999999999999874433 22
Q ss_pred CcccCCCCCh-HHHHHHHHhCCCeE
Q psy3230 103 NRTKTPGPGA-QSALRALARSNMKI 126 (151)
Q Consensus 103 ~~~kG~G~Gr-~~~ik~L~~~gl~I 126 (151)
.+..- | || .++++++...||+|
T Consensus 108 ~~yh~-G-gRV~Ala~gAre~GL~f 130 (187)
T 1vq8_N 108 NSPTP-G-SKVFAIQEGAIDAGLDI 130 (187)
T ss_dssp SCCCT-T-CHHHHHHHHHHHTTCBC
T ss_pred ceecc-c-hHHHHHHHHhhcCCEec
Confidence 22210 0 34 56788888899874
No 10
>3j21_O 50S ribosomal protein L18P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=96.08 E-value=0.0094 Score=47.63 Aligned_cols=99 Identities=13% Similarity=0.127 Sum_probs=67.0
Q ss_pred eeEEEEEccCCCeEEEEEc--CCCCEEEEEeccc-ceeecc--CCCCCHHHHHHHHHHHHHHHHHcCceEEEEEEEecCC
Q psy3230 28 FGVAHIFASFNDTFVHVTD--LSGRETIARITGG-MKVKAD--RDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGG 102 (151)
Q Consensus 28 ~gi~hI~~t~NNTiitlTD--~~G~~~~~~sSgg-~g~k~~--~rK~t~~Aa~~aa~~~~~k~~~~gi~~v~V~vr~~~g 102 (151)
.+.+.|+.|.+++++.|.| ..|..+++..|.- ...+.+ ...+..-||+.++..++++|.+.|+..+.+-.
T Consensus 32 kpRL~V~rSnkhIyAQIId~d~~g~~tLasAST~El~lk~g~~~~~~N~~AA~~vG~llA~Ral~kGI~~vvfDr----- 106 (203)
T 3j21_O 32 KPRLVVRKSLNHHIAQIIVYDPKGDRTLVSAHTRELIRDFGWKGHCGNTPSAYLLGLLIGYKAKQAGIEEAILDI----- 106 (203)
T ss_dssp CCEEEEEECSSCEEEEEEECCTTSCEEEEEECSTTTSSSSSCCSCTTSHHHHHHHHHHSSSSTTSSCCCCCEEEC-----
T ss_pred CCEEEEEEeCCeEEEEEEEecCCCCeEEEEEEccchhhhhcccCCCCcHHHHHHHHHHHHHHHHhCCCCEEEEec-----
Confidence 4788899999999999996 7765555554442 331111 11334568889999999999999999876543
Q ss_pred CcccCCCC---Ch-HHHHHHHHhCCCeEEEEEecCCCCCCCCCCC
Q psy3230 103 NRTKTPGP---GA-QSALRALARSNMKIGRIEDVTPIPSDSTRRK 143 (151)
Q Consensus 103 ~~~kG~G~---Gr-~~~ik~L~~~gl~I~~I~D~TpiphNGCRpk 143 (151)
.|+=. || .+++++....||+ +||+--|.|
T Consensus 107 ---gg~~y~~hgRV~Ala~gAre~GL~---------iPhs~~~fp 139 (203)
T 3j21_O 107 ---GLHPPVRGSSVFAVLKGAVDAGLN---------VPHSPEIFP 139 (203)
T ss_dssp ---CSSCCCTTSHHHHHHHHHHHHTCC---------CCCCSSCSC
T ss_pred ---CcceeccCcchhhhhhhcccCCee---------cccCCccCC
Confidence 23332 45 4567777788985 477766655
No 11
>1ovy_A 50S ribosomal protein L18; ribosome; NMR {Geobacillus stearothermophilus} SCOP: c.55.4.1
Probab=95.89 E-value=0.012 Score=43.30 Aligned_cols=93 Identities=16% Similarity=0.137 Sum_probs=62.0
Q ss_pred eeeeEEEEEccCCCeEEEEEcCCCCEEEEEeccc-ceeeccCCCCCHHHHHHHHHHHHHHHHHcCceEEEEEEEecCCCc
Q psy3230 26 DVFGVAHIFASFNDTFVHVTDLSGRETIARITGG-MKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNR 104 (151)
Q Consensus 26 ~~~gi~hI~~t~NNTiitlTD~~G~~~~~~sSgg-~g~k~~~rK~t~~Aa~~aa~~~~~k~~~~gi~~v~V~vr~~~g~~ 104 (151)
...+.+.|+.|.+++++.+.|..|..+++..|.- ..++... .....||+.+++.++++|.+.|+..|..- .+|..
T Consensus 26 ~~rpRL~V~rSnkhIyAQiidd~~~~tl~sAsT~e~~~~~~~-~~n~~AA~~vG~llA~Ral~~GI~~vvfD---rgg~~ 101 (120)
T 1ovy_A 26 TERPRLSVFRSNKHIYAQIIDDTKSATIVSASTLDKEFGLDS-TNNIEAAKKVGELVAKRALEKGIKQVVFD---RGGYL 101 (120)
T ss_dssp SSCCSEEEEEETTEEEEEEECCSSCCCEEEESTTSTTTCSSC-TTSHHHHHHHHHHHHHHHHHHSSSCCCCC---STTCS
T ss_pred CCCCEEEEEEeCCeEEEEEEEcCCCEEEEEEecCchhhCcCC-CCcHHHHHHHHHHHHHHHHHCCCCEEEEe---cCCcc
Confidence 3357889999999999999998866655554442 3333221 34566888999999999999999976432 33333
Q ss_pred ccCCCCChHHHHHHHHhCCCe
Q psy3230 105 TKTPGPGAQSALRALARSNMK 125 (151)
Q Consensus 105 ~kG~G~Gr~~~ik~L~~~gl~ 125 (151)
..| -=.++++++...||+
T Consensus 102 yhg---rV~ala~~are~GL~ 119 (120)
T 1ovy_A 102 YHG---RVKALADAAREAGLE 119 (120)
T ss_dssp SCS---STHHHHHHHHHHHCC
T ss_pred ccH---HHHHHHHHHHHhCCc
Confidence 311 134466666666765
No 12
>2zjr_L 50S ribosomal protein L18; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.55.4.1 PDB: 1sm1_M* 2zjp_L* 2zjq_L 1nkw_M 3cf5_L* 3dll_L* 3pio_L* 3pip_L* 1nwy_M* 1nwx_M* 1xbp_M* 1pnu_M 1pny_M 1vor_P 1vou_P 1vow_P 1voy_P 1vp0_P
Probab=95.31 E-value=0.0093 Score=43.63 Aligned_cols=89 Identities=13% Similarity=0.160 Sum_probs=59.1
Q ss_pred eeeEEEEEccCCCeEEEEEcCCCCEEEEEecccceeeccCCCCCHHHHHHHHHHHHHHHHHcCceEEEEEEEecCCCccc
Q psy3230 27 VFGVAHIFASFNDTFVHVTDLSGRETIARITGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTK 106 (151)
Q Consensus 27 ~~gi~hI~~t~NNTiitlTD~~G~~~~~~sSgg~g~k~~~rK~t~~Aa~~aa~~~~~k~~~~gi~~v~V~vr~~~g~~~k 106 (151)
..+.+.|+.|.++++..+.|..|..+++..|.- .+ + . .+...||+.+++.++++|.+.||+.+..-. +|...
T Consensus 25 ~rpRL~V~rSnkhIyAQiidd~~~~tl~sAST~-el-~-~-~~n~~AA~~vG~llA~Ral~~GI~~vvfDr---gg~~y- 96 (114)
T 2zjr_L 25 GRLRLSVYRSSKHIYAQIIDDSRGQTLAAASSA-AL-K-S-GNKTDTAAAVGKALAAAAAEKGIKQVVFDR---GSYKY- 96 (114)
T ss_dssp CSEEECCCTTSSCCCCCEEETTTTEECCCCCSC-SC-C-T-TCSSSSHHHHHHHHHHHHHTTCCCCCEECC---CSSCS-
T ss_pred CCCEEEEEEeCCeEEEEEEEcCCCEEEEEEEch-Hh-c-C-CCCHHHHHHHHHHHHHHHHHCCCCEEEEec---CCccc-
Confidence 347889999999999999988877655444432 23 2 1 233457788999999999999999876432 33332
Q ss_pred CCCCCh-HHHHHHHHhCCCeE
Q psy3230 107 TPGPGA-QSALRALARSNMKI 126 (151)
Q Consensus 107 G~G~Gr-~~~ik~L~~~gl~I 126 (151)
-|| .++++++...||++
T Consensus 97 ---hgrV~Ala~~are~GL~f 114 (114)
T 2zjr_L 97 ---HGRVKALADAAREGGLDF 114 (114)
T ss_dssp ---CSHHHHHHHHHHHHC---
T ss_pred ---cHHHHHHHHHHHHhCCcC
Confidence 234 34666777778763
No 13
>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=94.84 E-value=0.27 Score=41.19 Aligned_cols=102 Identities=19% Similarity=0.153 Sum_probs=69.0
Q ss_pred eeeEEEEEccCCCeEEEEEcCC--CCEEEEEeccc-c---eeeccCCCCCHHHHHHHHHHHHHHHHHc------------
Q psy3230 27 VFGVAHIFASFNDTFVHVTDLS--GRETIARITGG-M---KVKADRDEASPYAAMLAAQDVAEKCKTL------------ 88 (151)
Q Consensus 27 ~~gi~hI~~t~NNTiitlTD~~--G~~~~~~sSgg-~---g~k~~~rK~t~~Aa~~aa~~~~~k~~~~------------ 88 (151)
..+-+.|+.|..++++.|.|.. |..+++..|+- + |.+.+ ....-||+.++..+++++.+.
T Consensus 47 ~kpRLvVrrSNk~I~aQII~~~~~gd~tLasAsS~El~kyg~k~g--~tN~aAAy~tGlLlArRal~k~~ld~~y~G~~e 124 (297)
T 2zkr_n 47 PKYRMIVRVTNRDIICQIAYARIEGDMIVCARYAHELPKYGVKVG--LTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVE 124 (297)
T ss_dssp CSEEEEEEEETTEEEEEEEECCSSSCEEEEEEEGGGGGGTCCCSC--SSSHHHHHHHHHHHHHHHHCCCSCCCCCSSCCS
T ss_pred CCceEEEEEecCcEEEEEEeccCCCCEEEEEeecCcccccccccC--CCcHHHHHHHHHHHHHHHHHhhccchhhcCccc
Confidence 3578889999999999999977 77666655542 3 23322 234457889999999999987
Q ss_pred ---------------CceEEEEEEEecCCCcccCCCCCh-HHHHHHHHhCCCeEEEEEecCCCCCCCCCCCC
Q psy3230 89 ---------------GITALHIKLRATGGNRTKTPGPGA-QSALRALARSNMKIGRIEDVTPIPSDSTRRKG 144 (151)
Q Consensus 89 ---------------gi~~v~V~vr~~~g~~~kG~G~Gr-~~~ik~L~~~gl~I~~I~D~TpiphNGCRpkK 144 (151)
|+..+.+-+ ||.+..- | || .+++++....||. +||+-.|.|.
T Consensus 125 ~~g~~~~ve~~~~~~gi~~vvfDr---Gl~rytt-g-gRVfa~akGArDgGL~---------~Phs~~~fpg 182 (297)
T 2zkr_n 125 VTGDEYNVESIDGQPGAFTCYLDA---GLARTTT-G-NKVFGALKGAVDGGLS---------IPHSTKRFPG 182 (297)
T ss_dssp SSSCCCCCSSSCSSSCCCBEEEEC---TTSCCCT-T-CHHHHHHHHHHHTTCB---------CCCCGGGSCC
T ss_pred cccccccccccccCCCceEEEEec---CCcccCC-C-chHHHHHHHHHhcCcc---------cCCCCccCCC
Confidence 666665544 2222100 1 23 4577888889987 5888777654
No 14
>3bbo_Q Ribosomal protein L18; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=94.35 E-value=0.036 Score=42.80 Aligned_cols=91 Identities=20% Similarity=0.240 Sum_probs=60.9
Q ss_pred eeEEEEEccCCCeEEEEEcCCCCEEEEEecc-cceeeccC---CCCCHHHHHHHHHHHHHHHHHcCceEEEEEEEecCCC
Q psy3230 28 FGVAHIFASFNDTFVHVTDLSGRETIARITG-GMKVKADR---DEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGN 103 (151)
Q Consensus 28 ~gi~hI~~t~NNTiitlTD~~G~~~~~~sSg-g~g~k~~~---rK~t~~Aa~~aa~~~~~k~~~~gi~~v~V~vr~~~g~ 103 (151)
.+.|.|+.|.+++...|.|..+..++...|. -..+++.- ..+.-.||..+++.++++|++.||+.|..- .+|.
T Consensus 65 rPRL~V~rSnkhIyAQvIdd~~g~tLasASTlek~lk~~l~~g~~~n~~AA~~VG~liAeRA~e~GI~~VvFD---Rgg~ 141 (161)
T 3bbo_Q 65 RPRLCVFRSNKHLYVQVIDDSKMHTLASASTMQKSISEELDYSSSPTIEVAKKVGEVIASACLEKGITKVAFD---RGGY 141 (161)
T ss_dssp CCCCEEEECSSCEEEEEECCTTSCEEEEEEHHHHHHHHCCTTCCSSSHHHHHHHHHHSSSHHHHTSSCCCCCC---CSSS
T ss_pred CCEEEEEecCCeEEEEEEECCCCEEEEEEeCCcHHHHhhccccCCCCHHHHHHHHHHHHHHHHHCCCCEEEEe---CCCC
Confidence 5789999999999999987765544444443 21222111 135567888999999999999999997543 2333
Q ss_pred cccCCCCCh-HHHHHHHHhCCCe
Q psy3230 104 RTKTPGPGA-QSALRALARSNMK 125 (151)
Q Consensus 104 ~~kG~G~Gr-~~~ik~L~~~gl~ 125 (151)
.-. || +++..++...||+
T Consensus 142 ~Yh----GRVkAladaaRe~GL~ 160 (161)
T 3bbo_Q 142 PYH----GRVKALADAAREKGLQ 160 (161)
T ss_dssp CSS----STTHHHHHHHTTTTCC
T ss_pred cch----HHHHHHHHHHHHhCCc
Confidence 322 34 4456677777876
No 15
>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_D 4b6a_D 3izc_Q 3izs_Q 3o58_E 3o5h_E 3jyw_E 1s1i_E
Probab=92.02 E-value=1.2 Score=37.22 Aligned_cols=104 Identities=15% Similarity=0.155 Sum_probs=67.2
Q ss_pred eeeEEEEEccCCCeEEEEEcC--CCCEEEEEeccc-ce---eeccCCCCCHHHHHHHHHHHHHHHHHc--------CceE
Q psy3230 27 VFGVAHIFASFNDTFVHVTDL--SGRETIARITGG-MK---VKADRDEASPYAAMLAAQDVAEKCKTL--------GITA 92 (151)
Q Consensus 27 ~~gi~hI~~t~NNTiitlTD~--~G~~~~~~sSgg-~g---~k~~~rK~t~~Aa~~aa~~~~~k~~~~--------gi~~ 92 (151)
..+-+.|+.|..++++.|.|. .|..+++..|+- .. .+.+ .+..-||+.++..++++|.+. |+..
T Consensus 47 ~kpRLvV~rSNrhIyAQIIdd~~~Gd~tLaSASS~El~k~g~k~~--~~N~~AAy~vG~LiAeRAl~k~~ld~~y~G~~e 124 (297)
T 3u5e_D 47 PKYRLVVRFTNKDIICQIISSTITGDVVLAAAYSHELPRYGITHG--LTNWAAAYATGLLIARRTLQKLGLDETYKGVEE 124 (297)
T ss_dssp CCCEEEEEEETTEEEEEEEECCTTCCEEEEEEEGGGGGGGTCCSC--TTSHHHHHHHHHHHHHHHHHHTSTTSSCCCCSS
T ss_pred CCceEEEEEcCCeEEEEEeecCCCCCEEEEEEeecchhhcccCCC--CCcHHHHHHHHHHHHHHHHHhhCCcccccCccc
Confidence 467888899999999999997 576656555442 32 2211 234468889999999999987 6664
Q ss_pred EE-----------------EEEEecCCCcccCCCCChHHHHHHHHhCCCeEEEEEecCCCCCCCCCCC
Q psy3230 93 LH-----------------IKLRATGGNRTKTPGPGAQSALRALARSNMKIGRIEDVTPIPSDSTRRK 143 (151)
Q Consensus 93 v~-----------------V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~~I~D~TpiphNGCRpk 143 (151)
+. +.|. .|+.+.. .|--=.+++++....||. |||+--|.|
T Consensus 125 ~~g~~~~ve~~~~~~~~f~~~LD-vGl~rtt-tG~RVfaalKGA~DgGL~---------IPhs~~~fp 181 (297)
T 3u5e_D 125 VEGEYELTEAVEDGPRPFKVFLD-IGLQRTT-TGARVFGALKGASDGGLY---------VPHSENRFP 181 (297)
T ss_dssp CCCCCCCCCCCSSSCCCCBCEEE-CTTCCCC-TTCSHHHHHHHHHHHTCB---------CCCCSTTSS
T ss_pred cccceeccccccCCCCceeEEEe-cCCCccC-ccceehhhhhcccccCcc---------cCCCccccc
Confidence 11 3442 1111111 122225688888889987 688877765
No 16
>4a17_M RPL5, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_M 4a1c_M 4a1e_M
Probab=91.54 E-value=1.2 Score=37.39 Aligned_cols=105 Identities=18% Similarity=0.116 Sum_probs=67.1
Q ss_pred eeeEEEEEccCCCeEEEEEcC--CCCEEEEEeccc-c---eeeccCCCCCHHHHHHHHHHHHHHHHHc--------CceE
Q psy3230 27 VFGVAHIFASFNDTFVHVTDL--SGRETIARITGG-M---KVKADRDEASPYAAMLAAQDVAEKCKTL--------GITA 92 (151)
Q Consensus 27 ~~gi~hI~~t~NNTiitlTD~--~G~~~~~~sSgg-~---g~k~~~rK~t~~Aa~~aa~~~~~k~~~~--------gi~~ 92 (151)
+.+-+.|+-|..++++.|.|. .|..+++..|+- . +.+.+ .+..-||..++..++++|.+. |+..
T Consensus 47 pkpRLvV~rSNrhIyAQIIdd~~~Gd~tLaSASS~El~~~g~k~~--~~N~~AAy~vG~LiAeRAl~k~~~d~~y~G~~e 124 (301)
T 4a17_M 47 PKYRLVARATNTRIIAQIVYATLKCDRVLCAADSYELKRFGVSTG--LASYAAAYATGLLLARRLLKQIGLDTVYAGQTK 124 (301)
T ss_dssp CCEEEEEEECSSCEEEEEEEECSSCEEEEEEEETTHHHHTTCCSC--TTSHHHHHHHHHHHHHHHHHHHTCTTTCCCCSS
T ss_pred CCceEEEEEcCCeEEEEEeecCCCCCEEEEEEeeccchhccccCC--CCcHHHHHHHHHHHHHHHHHhcCCcccccCccc
Confidence 468888999999999999997 675555555442 2 22221 234468889999999999987 7762
Q ss_pred -----------------EEEEEEecCCCcccCCCCChHHHHHHHHhCCCeEEEEEecCCCCCCCCCCCC
Q psy3230 93 -----------------LHIKLRATGGNRTKTPGPGAQSALRALARSNMKIGRIEDVTPIPSDSTRRKG 144 (151)
Q Consensus 93 -----------------v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~~I~D~TpiphNGCRpkK 144 (151)
+.+.|. .|+.+.. .|--=.+++++....||. |||+--|.|.
T Consensus 125 ~~g~~~~ve~~~~~~~~f~~~LD-~Gl~rtt-~G~RVfaalKGA~DgGL~---------IPhs~~~fpg 182 (301)
T 4a17_M 125 VDGAYFNVDEDQKEKKPFKAILD-AGLVRTT-TGNRVFGVLKGACDGGIN---------IPHSESRFPG 182 (301)
T ss_dssp CCCSCCCGGGTCCSSCCCBCEEE-CTTSCCC-SSCHHHHHHHHHHHTTCB---------CCCCSSSSSS
T ss_pred cccceeecccccCCCCceEEEEe-cCCcccC-cccchhhhhhcccccCcc---------cCCCCccCCC
Confidence 123442 1111110 011125688888889987 5888776653
No 17
>3iz5_Q 60S ribosomal protein L5 (L18P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Q
Probab=86.76 E-value=2.7 Score=35.28 Aligned_cols=96 Identities=21% Similarity=0.209 Sum_probs=60.1
Q ss_pred cCCCeEEEEEcC--CCCEEEEEeccc-ce---eeccCCCCCHHHHHHHHHHHHHHHHHc--------CceEEE-------
Q psy3230 36 SFNDTFVHVTDL--SGRETIARITGG-MK---VKADRDEASPYAAMLAAQDVAEKCKTL--------GITALH------- 94 (151)
Q Consensus 36 t~NNTiitlTD~--~G~~~~~~sSgg-~g---~k~~~rK~t~~Aa~~aa~~~~~k~~~~--------gi~~v~------- 94 (151)
|..++++.|.|. .|..+++..|+- +. .+.+ -+..-||+.++..++++|.+. |+..+.
T Consensus 57 SNrhIyaQII~~~i~GD~tLaSAsS~EL~kyG~k~g--~~N~aAAy~tGlLiA~RAl~k~~ld~~y~G~~e~~g~~~~ve 134 (304)
T 3iz5_Q 57 TNKDITAQIVYATIAGDIVMAAAYSHELPRYGLEVG--LTNYAAAYCTGLLLARRVLTLRGLDQEYEGNVEATGEDYYVE 134 (304)
T ss_dssp CSSCCEEEEEEEETTEEEEEEEEETTTGGGGSCCSC--TTSHHHHHHHHHHHHHHHHTTCSSCCCCCSSSCCCSCCCSSC
T ss_pred cCCcEEEEEEecCCCCCEEEEEEecCchhhcccCCC--CCcHHHHHHHHHHHHHHHHHhhCCccccCCccccccceeccc
Confidence 888999999987 575555555443 32 2211 223457889999999999987 776521
Q ss_pred ---------EEEEecCCCcccCCCCChHHHHHHHHhCCCeEEEEEecCCCCCCCCCCCC
Q psy3230 95 ---------IKLRATGGNRTKTPGPGAQSALRALARSNMKIGRIEDVTPIPSDSTRRKG 144 (151)
Q Consensus 95 ---------V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~~I~D~TpiphNGCRpkK 144 (151)
+.|. .|+.+.. .|--=.+++++....||. |||+--|.|.
T Consensus 135 ~~~~~~~f~~~LD-iGL~rtt-tG~RVfaalKGA~DgGL~---------IPhs~~~fpg 182 (304)
T 3iz5_Q 135 PADERRPFRALLD-VGLIRTT-TGNRVFGALKGALDGGLD---------IPHSDKRFAG 182 (304)
T ss_dssp CSSCSCCCSCEEE-CTTCCCC-SSCHHHHHHHHHHTTTCC---------CCCCSSSCCC
T ss_pred ccCCCCCceEEEe-cCCcccc-cCceeEEeeccccccCcc---------cCCCcccccC
Confidence 3442 1111111 111124588888889986 6998877764
No 18
>4e0a_A BH1408 protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG, transferase; 1.80A {Bacillus halodurans} PDB: 4f6a_A*
Probab=71.16 E-value=18 Score=23.92 Aligned_cols=57 Identities=9% Similarity=0.049 Sum_probs=41.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeEEEEEecCCCC
Q psy3230 68 EASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIGRIEDVTPIP 136 (151)
Q Consensus 68 K~t~~Aa~~aa~~~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~~I~D~Tpip 136 (151)
++.-++.. +.+.+.+.+.++|+..|.+.+. .....+++.+.+.|++.......++-|
T Consensus 101 rg~Gig~~-ll~~~~~~~~~~g~~~i~l~~~-----------~~n~~a~~~y~k~GF~~~~~~~~~~~~ 157 (164)
T 4e0a_A 101 RGGGIGRL-IFEAIISYGKAHQVDAIELDVY-----------DFNDRAKAFYHSLGMRCQKQTMELPLL 157 (164)
T ss_dssp CSSSHHHH-HHHHHHHHHHHTTCSEEEEEEE-----------TTCHHHHHHHHHTTCEEEEEEEEEECC
T ss_pred hcCChHHH-HHHHHHHHHHHcCCCEEEEEEE-----------cCCHHHHHHHHHcCCEEeceeccCCcc
Confidence 33446554 4466888888999999999883 345678898999999887766655544
No 19
>3eo4_A Uncharacterized protein MJ1062; APC60792.2,MJ_1062,methanocaldococcus jannaschii DSM 2661, S genomics, PSI-2; HET: MES PG6; 2.19A {Methanocaldococcus jannaschii}
Probab=52.48 E-value=49 Score=22.11 Aligned_cols=50 Identities=10% Similarity=0.092 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeEEEE
Q psy3230 68 EASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIGRI 129 (151)
Q Consensus 68 K~t~~Aa~~aa~~~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~~I 129 (151)
++.-++.. +...+.+.+.++|+..|.+.+. ..-..+++.+.+.|+.....
T Consensus 103 rg~Gig~~-ll~~~~~~a~~~g~~~i~l~v~-----------~~N~~a~~~y~k~GF~~~g~ 152 (164)
T 3eo4_A 103 WGKHIGRH-SVSLVLKWLKNIGYKKAHARIL-----------ENNIRSIKLFESLGFKKTKK 152 (164)
T ss_dssp TTSSHHHH-HHHHHHHHHHHTTCCEEEEEEE-----------TTCHHHHHHHHHTTCEEEEE
T ss_pred cCccHHHH-HHHHHHHHHHhCCCcEEEEEeC-----------CCCHHHHHHHHHCCCEEEee
Confidence 44456654 4466778888899999999983 44568889999999987654
No 20
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1
Probab=48.57 E-value=43 Score=25.96 Aligned_cols=50 Identities=14% Similarity=0.175 Sum_probs=37.3
Q ss_pred CCeEEEEEcCCCCEEEEEecccceeeccCCCCCHHHHHHHHHHHHHHHHHcCce
Q psy3230 38 NDTFVHVTDLSGRETIARITGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGIT 91 (151)
Q Consensus 38 NNTiitlTD~~G~~~~~~sSgg~g~k~~~rK~t~~Aa~~aa~~~~~k~~~~gi~ 91 (151)
.=.++-+.|+.-. .+.|+||-+...+++ +...+..|+.++++.++++|++
T Consensus 48 pgli~Rl~~Pk~t-~lIF~SGKiv~TGak---S~e~a~~a~~~i~~~L~~lG~~ 97 (198)
T 1mp9_A 48 PGLIFRLESPKIT-SLIFKSGKMVVTGAK---STDELIKAVKRIIKTLKKYGMQ 97 (198)
T ss_dssp SSEEEEETTTTEE-EEECTTSEEEEECCS---SHHHHHHHHHHHHHHHHHTTCC
T ss_pred cceEEEcCCCceE-EEEeCCCeEEEeccC---CHHHHHHHHHHHHHHHHHcCCc
Confidence 3455666667664 356888878888754 5677888999999999999985
No 21
>2jlm_A Putative phosphinothricin N-acetyltransferase; methionine sulfoximine; 2.35A {Acinetobacter baylyi}
Probab=48.03 E-value=67 Score=22.36 Aligned_cols=49 Identities=0% Similarity=-0.031 Sum_probs=36.5
Q ss_pred CCHHHHHHHHHHHHHHHHHcCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeEEEE
Q psy3230 69 ASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIGRI 129 (151)
Q Consensus 69 ~t~~Aa~~aa~~~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~~I 129 (151)
+--++.. +.+.+.+.+.++|+..|.+.+. ..-..+++.+.+.|+.....
T Consensus 104 g~Gig~~-ll~~~~~~a~~~g~~~i~l~v~-----------~~N~~a~~~yek~GF~~~g~ 152 (182)
T 2jlm_A 104 GLGLSKH-LMNELIKRAVESEVHVMVGCID-----------ATNVASIQLHQKLGFIHSGT 152 (182)
T ss_dssp TSSHHHH-HHHHHHHHHHHTTCCEEEEEEE-----------TTCHHHHHHHHHTTCEEEEE
T ss_pred CCCHHHH-HHHHHHHHHHHCCceEEEEEEe-----------CCCHHHHHHHHHCCCcEEEE
Confidence 3446554 4466788888899999999983 44678889899999876543
No 22
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=47.56 E-value=58 Score=21.45 Aligned_cols=53 Identities=25% Similarity=0.425 Sum_probs=38.2
Q ss_pred CHHHHHHHHHHHHHHHHHcCceEEEEEEEecCCCcccCCCCC--hHHHHHHHHhCCCeEEEEEec
Q psy3230 70 SPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPG--AQSALRALARSNMKIGRIEDV 132 (151)
Q Consensus 70 t~~Aa~~aa~~~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~G--r~~~ik~L~~~gl~I~~I~D~ 132 (151)
|...|..+-+.++..|...|+..|.|.= |-|.| |..+-..|.+. =.|.+..+-
T Consensus 13 ~~~eA~~~l~~fl~~a~~~g~~~v~IIH---------GkG~GvLr~~V~~~L~~~-~~V~~f~~a 67 (83)
T 2zqe_A 13 TVAEALLEVDQALEEARALGLSTLRLLH---------GKGTGALRQAIREALRRD-KRVESFADA 67 (83)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSEEEEEC---------CSTTSHHHHHHHHHHHHC-TTEEEEEEC
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEEE---------CCCchHHHHHHHHHHhcC-CceeEEEEc
Confidence 4566777888899999999999999884 55554 66677777765 345555554
No 23
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ...
Probab=47.37 E-value=29 Score=26.56 Aligned_cols=50 Identities=18% Similarity=0.299 Sum_probs=36.7
Q ss_pred CCCeEEEEEcCCCCEEEEEecccceeeccCCCCCHHHHHHHHHHHHHHHHHcCc
Q psy3230 37 FNDTFVHVTDLSGRETIARITGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGI 90 (151)
Q Consensus 37 ~NNTiitlTD~~G~~~~~~sSgg~g~k~~~rK~t~~Aa~~aa~~~~~k~~~~gi 90 (151)
+.=.++-+.|++-. ++.|+||-+...+++ +...+..|++++++.++++|+
T Consensus 39 fpgli~R~~~Pk~~-~lIF~SGKiv~TGak---s~e~~~~a~~~i~~~L~~lg~ 88 (180)
T 1ytb_A 39 FAAVIMRIREPKTT-ALIFASGKMVVTGAK---SEDDSKLASRKYARIIQKIGF 88 (180)
T ss_dssp CSSEEEEETTTTEE-EEECTTSEEEEEEES---SHHHHHHHHHHHHHHHHHHTC
T ss_pred cCCEEEEeCCCcEE-EEEECCCeEEEEecC---CHHHHHHHHHHHHHHHHHcCC
Confidence 33455566677763 467888888777754 566778899999999999987
No 24
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C
Probab=46.62 E-value=28 Score=27.63 Aligned_cols=48 Identities=19% Similarity=0.286 Sum_probs=35.5
Q ss_pred CeEEEEEcCCCCEEEEEecccceeeccCCCCCHHHHHHHHHHHHHHHHHcCc
Q psy3230 39 DTFVHVTDLSGRETIARITGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGI 90 (151)
Q Consensus 39 NTiitlTD~~G~~~~~~sSgg~g~k~~~rK~t~~Aa~~aa~~~~~k~~~~gi 90 (151)
=.++-+.|++-- ++.|+||-+...+++ +...+..|++++++.++++|+
T Consensus 79 glv~Rl~~Pk~t-~LIF~SGKiV~TGAk---S~e~a~~A~~ki~~~L~~lG~ 126 (218)
T 3eik_A 79 AVIMRIREPKTT-ALIFASGKMVITGAK---SEKSSRMAAQRYAKIIHKLGF 126 (218)
T ss_dssp SEEEEETTTTEE-EEECTTSEEEEEEES---SHHHHHHHHHHHHHHHHHTTC
T ss_pred eEEEEecCCcEE-EEEECCCeEEEEecC---CHHHHHHHHHHHHHHHHHcCC
Confidence 345566666653 456888878777754 567788899999999999986
No 25
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A
Probab=46.59 E-value=36 Score=26.00 Aligned_cols=49 Identities=20% Similarity=0.262 Sum_probs=35.7
Q ss_pred CeEEEEEcCCCCEEEEEecccceeeccCCCCCHHHHHHHHHHHHHHHHHcCce
Q psy3230 39 DTFVHVTDLSGRETIARITGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGIT 91 (151)
Q Consensus 39 NTiitlTD~~G~~~~~~sSgg~g~k~~~rK~t~~Aa~~aa~~~~~k~~~~gi~ 91 (151)
=.++-+.|+.-. .+.|+||-+.-.+++ +...++.|+.++++.++++|++
T Consensus 45 gli~Rl~~P~~t-~lIF~SGKiv~TGak---S~~~~~~a~~~i~~~L~~lG~~ 93 (182)
T 1ais_A 45 GIICHLDDPKVA-LLIFSSGKLVVTGAK---SVQDIERAVAKLAQKLKSIGVK 93 (182)
T ss_dssp SEEEECSSSCCE-EEECTTSEEEEEEES---SHHHHHHHHHHHHHHHHHTTCC
T ss_pred cEEEEcCCCcEE-EEEeCCCeEEEecCC---CHHHHHHHHHHHHHHHHHcCCC
Confidence 344455566653 456888878777754 5677888999999999999985
No 26
>3qd7_X Uncharacterized protein YDAL; alpha/beta/alpha fold, endonuclease, hydrolase; 2.30A {Escherichia coli}
Probab=46.39 E-value=67 Score=23.31 Aligned_cols=28 Identities=7% Similarity=-0.042 Sum_probs=23.0
Q ss_pred CHHHHHHHHHHHHHHHHHcCceEEEEEE
Q psy3230 70 SPYAAMLAAQDVAEKCKTLGITALHIKL 97 (151)
Q Consensus 70 t~~Aa~~aa~~~~~k~~~~gi~~v~V~v 97 (151)
|..-|..+.+.++..|...|+..|.|.-
T Consensus 56 ~~~EA~~~L~~fL~~a~~~g~r~V~IIH 83 (137)
T 3qd7_X 56 PVEECRKMVFSFIQQALADGLRNVLIIH 83 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence 4566777778899999999999999874
No 27
>2ge3_A Probable acetyltransferase; structural GEN PSI, protein structure initiative, midwest center for struc genomics, MCSG; HET: ACO; 2.25A {Agrobacterium tumefaciens} SCOP: d.108.1.1
Probab=46.32 E-value=60 Score=21.86 Aligned_cols=52 Identities=6% Similarity=0.125 Sum_probs=37.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeEEEEEe
Q psy3230 68 EASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIGRIED 131 (151)
Q Consensus 68 K~t~~Aa~~aa~~~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~~I~D 131 (151)
++.-++.. +.+.+.+.|.++|+..|.+.+. ..-..+++.+.+.|+......+
T Consensus 98 rg~Gig~~-ll~~~~~~a~~~g~~~i~l~v~-----------~~N~~a~~~y~k~GF~~~~~~~ 149 (170)
T 2ge3_A 98 RNKGLGAR-LMRRTLDAAHEFGLHRIELSVH-----------ADNARAIALYEKIGFAHEGRAR 149 (170)
T ss_dssp TTSSHHHH-HHHHHHHHHHHHTCCEEEEEEE-----------TTCHHHHHHHHHHTCEEEEEEE
T ss_pred hCCCHHHH-HHHHHHHHHHHCCceEEEEEEE-----------cCCHHHHHHHHHCCCEEEeEec
Confidence 33446554 4466778888899999999983 3456788888889998765444
No 28
>1vhs_A Similar to phosphinothricin acetyltransferase; structural genomics, unknown function; 1.80A {Bacillus subtilis} SCOP: d.108.1.1
Probab=45.76 E-value=59 Score=22.46 Aligned_cols=50 Identities=12% Similarity=0.138 Sum_probs=36.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeEEEE
Q psy3230 68 EASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIGRI 129 (151)
Q Consensus 68 K~t~~Aa~~aa~~~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~~I 129 (151)
++.-++.. +.+.+.+.|.++|+..|.+.+. .....+++.+.+.|+.....
T Consensus 94 rg~GiG~~-ll~~~~~~a~~~g~~~i~l~v~-----------~~N~~A~~~yek~GF~~~g~ 143 (175)
T 1vhs_A 94 RGKGVGSY-LLQEALRIAPNLGIRSLMAFIF-----------GHNKPSLKLFEKHGFAEWGL 143 (175)
T ss_dssp CSSSHHHH-HHHHHHHHGGGGTCSEEEEEEE-----------TTCHHHHHHHHHTTCEEEEE
T ss_pred cCCCHHHH-HHHHHHHHHHhCCceEEEEEEe-----------cCCHHHHHHHHHCCCEEEeE
Confidence 33446554 4466778888899999999883 44677889899999976554
No 29
>2j8m_A Acetyltransferase PA4866 from P. aeruginosa; GCN5 family, phosphinothricin, methionine sulfone, methionine sulfoximine; 1.44A {Pseudomonas aeruginosa} PDB: 2bl1_A 2j8n_A 2j8r_A* 1yvo_A
Probab=45.51 E-value=69 Score=21.75 Aligned_cols=50 Identities=12% Similarity=0.232 Sum_probs=36.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeEEEE
Q psy3230 68 EASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIGRI 129 (151)
Q Consensus 68 K~t~~Aa~~aa~~~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~~I 129 (151)
++.-++.+ +.+.+.+.|.++|+..|.+.+. .....+++.+.+.|+.....
T Consensus 95 rg~Gig~~-ll~~~~~~a~~~g~~~i~l~v~-----------~~N~~a~~~y~k~GF~~~g~ 144 (172)
T 2j8m_A 95 RGKGLGVQ-LLQALIERARAQGLHVMVAAIE-----------SGNAASIGLHRRLGFEISGQ 144 (172)
T ss_dssp TTSSHHHH-HHHHHHHHHHHTTCCEEEEEEE-----------TTCHHHHHHHHHTTCEEEEE
T ss_pred cCCCHHHH-HHHHHHHHHHHCCccEEEEEEc-----------CCCHHHHHHHHHCCCEEEee
Confidence 34456554 4466788888999999999882 34567888888999976554
No 30
>2ae6_A Acetyltransferase, GNAT family; GCN5-related N-acetyltransferase (GNAT), alpha-beta, structu genomics, PSI, protein structure initiative; HET: GOL; 2.19A {Enterococcus faecalis} SCOP: d.108.1.1
Probab=45.13 E-value=70 Score=21.71 Aligned_cols=52 Identities=12% Similarity=0.127 Sum_probs=37.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeEEEEEe
Q psy3230 68 EASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIGRIED 131 (151)
Q Consensus 68 K~t~~Aa~~aa~~~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~~I~D 131 (151)
++.-++.. +.+.+.+.|.++|+..|.+.+. .....+++...+.|+.......
T Consensus 94 rg~GiG~~-ll~~~~~~a~~~g~~~i~l~v~-----------~~N~~A~~~Yek~GF~~~~~~~ 145 (166)
T 2ae6_A 94 QDQGIGGS-LLSYIKDMAEISGIHKLSLRVM-----------ATNQEAIRFYEKHGFVQEAHFK 145 (166)
T ss_dssp TTSSHHHH-HHHHHHHHHHHHTCCEEEEEEE-----------TTCHHHHHHHHHTTCEEEEEEE
T ss_pred hCCCHHHH-HHHHHHHHHHHCCCCEEEEEee-----------cCCHHHHHHHHHcCCEEeeEEc
Confidence 33456554 4466778888899999999982 4456788989999997765443
No 31
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii}
Probab=44.61 E-value=27 Score=26.91 Aligned_cols=50 Identities=14% Similarity=0.148 Sum_probs=36.6
Q ss_pred CCeEEEEEcCCCCEEEEEecccceeeccCCCCCHHHHHHHHHHHHHHHHHcCce
Q psy3230 38 NDTFVHVTDLSGRETIARITGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGIT 91 (151)
Q Consensus 38 NNTiitlTD~~G~~~~~~sSgg~g~k~~~rK~t~~Aa~~aa~~~~~k~~~~gi~ 91 (151)
.=.++-+.|++-. .+.|+||-+.-.+++ +...+..|+.++++.++++|++
T Consensus 48 pgli~Rl~~Pk~t-~lIF~SGKiv~TGAk---S~e~a~~a~~~~~~~L~~lg~~ 97 (188)
T 2z8u_A 48 PGLVCRLSVPKVA-LLIFRSGKVNCTGAK---SKEEAEIAIKKIIKELKDAGID 97 (188)
T ss_dssp -CEEEEETTTTEE-EEECTTSEEEEEEES---SHHHHHHHHHHHHHHHHHTTCC
T ss_pred ccEEEEcCCCcEE-EEEeCCCeEEEecCC---CHHHHHHHHHHHHHHHHhcCCC
Confidence 3455666667654 456888878777754 5677888999999999999985
No 32
>3g8w_A Lactococcal prophage PS3 protein 05; APC61042, acetyltransferase, staphylococcus epidermidis ATCC structural genomics; HET: NHE FLC; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=42.17 E-value=73 Score=21.11 Aligned_cols=50 Identities=14% Similarity=0.053 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHHHHHHHHHcCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeEEEEE
Q psy3230 69 ASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIGRIE 130 (151)
Q Consensus 69 ~t~~Aa~~aa~~~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~~I~ 130 (151)
+--++.. +.+.+.+.+.+.|+..|.+.+. ..-..+++...+.|+......
T Consensus 95 g~Gig~~-ll~~~~~~a~~~g~~~i~l~v~-----------~~N~~a~~~y~k~GF~~~g~~ 144 (169)
T 3g8w_A 95 DEIVNRE-LINHIIQYAKEQNIETLMIAIA-----------SNNISAKVFFSSIGFENLAFE 144 (169)
T ss_dssp CHHHHHH-HHHHHHHHHHHTTCCEEEEEEE-----------TTCHHHHHHHHTTTCEEEEEE
T ss_pred CCcHHHH-HHHHHHHHHHHCCCCEEEEEEe-----------cCCHHHHHHHHHcCCEEeeee
Confidence 3356554 4466788888999999999883 345578888899999876653
No 33
>3pzj_A Probable acetyltransferases; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: MSE; 1.85A {Chromobacterium violaceum}
Probab=41.38 E-value=75 Score=22.54 Aligned_cols=50 Identities=12% Similarity=0.051 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeEEEE
Q psy3230 68 EASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIGRI 129 (151)
Q Consensus 68 K~t~~Aa~~aa~~~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~~I 129 (151)
.+--++.. +...+.+.+.++|+..|.+.+. ..-..+++.+.+.|+.....
T Consensus 132 ~g~Gig~~-ll~~l~~~a~~~g~~~i~l~v~-----------~~N~~a~~~y~k~GF~~~g~ 181 (209)
T 3pzj_A 132 RRTRLATE-AVFLLLKTAFELGYRRCEWRCD-----------SRNAASAAAARRFGFQFEGT 181 (209)
T ss_dssp TTSHHHHH-HHHHHHHHHHHTTCSEEEEEEE-----------TTCHHHHHHHHHHTCEEEEE
T ss_pred hcCCHHHH-HHHHHHHHHHHcCCcEEEEeec-----------CCCHHHHHHHHHCCCEEeee
Confidence 45567665 4466778888899999999983 44668889899999876544
No 34
>3f8k_A Protein acetyltransferase; GCN5-related N-acetyltransferase; HET: COA; 1.84A {Sulfolobus solfataricus P2}
Probab=41.38 E-value=73 Score=20.89 Aligned_cols=48 Identities=10% Similarity=0.176 Sum_probs=35.5
Q ss_pred CCHHHHHHHHHHHHHHHHHcCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeEEE
Q psy3230 69 ASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIGR 128 (151)
Q Consensus 69 ~t~~Aa~~aa~~~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~~ 128 (151)
+.-++.+ +.+.+.+.+.+.|+..+.+.+ ...-..+++.+.+.|++...
T Consensus 87 g~Gig~~-ll~~~~~~~~~~g~~~i~l~~-----------~~~N~~a~~~y~k~GF~~~~ 134 (160)
T 3f8k_A 87 TLGIGTL-LVKTLIEEAKKSGLSTVKFYT-----------LPENTPMIKIGRKLGFKMRF 134 (160)
T ss_dssp TSSHHHH-HHHHHHHHHHHTTCSEEEEEE-----------CTTCHHHHHHHHHHTCEEEE
T ss_pred CCCHHHH-HHHHHHHHHHHcCceEEEEEE-----------cccCHHHHHHHHHcCCEEEe
Confidence 3346554 446677888899999999988 34556788888888987653
No 35
>3d8p_A Acetyltransferase of GNAT family; NP_373092.1, structural GE joint center for structural genomics, JCSG, protein structu initiative; 2.20A {Staphylococcus aureus subsp}
Probab=41.27 E-value=72 Score=20.78 Aligned_cols=50 Identities=12% Similarity=0.019 Sum_probs=36.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeEEEE
Q psy3230 68 EASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIGRI 129 (151)
Q Consensus 68 K~t~~Aa~~aa~~~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~~I 129 (151)
++--++.. +.+.+.+.+.+.|+..|.+.+ ......+++.+.+.|+.....
T Consensus 91 rg~Gig~~-ll~~~~~~a~~~g~~~i~l~~-----------~~~n~~a~~~y~k~GF~~~~~ 140 (163)
T 3d8p_A 91 RNLKIGKK-LLDKVIMTCKEQNIDGIYLGT-----------IDKFISAQYFYSNNGFREIKR 140 (163)
T ss_dssp TTTTHHHH-HHHHHHHHHHHTTCCEEEEEE-----------CTTCHHHHHHHHHTTCEEECG
T ss_pred ccCCHHHH-HHHHHHHHHHHCCCeEEEEEe-----------cCCCHHHHHHHHHCCCEEeee
Confidence 33446654 446677888889999999988 344567888889999987654
No 36
>1on0_A YYCN protein; structural genomics, alpha-beta protein with anti-parallel B strands, PSI, protein structure initiative; 2.20A {Bacillus subtilis} SCOP: d.108.1.1
Probab=41.19 E-value=40 Score=22.91 Aligned_cols=47 Identities=17% Similarity=0.284 Sum_probs=34.8
Q ss_pred CCHHHHHHHHHHHHHHHHHcCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeEE
Q psy3230 69 ASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIG 127 (151)
Q Consensus 69 ~t~~Aa~~aa~~~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~ 127 (151)
+--|+.+ +.+.+.+.|.++|+..|.+.+ ......+++...+.|+...
T Consensus 102 g~G~g~~-ll~~~~~~a~~~g~~~i~l~v-----------~~~N~~a~~~Y~k~GF~~~ 148 (158)
T 1on0_A 102 GKGYAKQ-ALAALDQAARSMGIRKLSLHV-----------FAHNQTARKLYEQTGFQET 148 (158)
T ss_dssp SSSHHHH-HHHHHHHHHHHHTCCEEEECC-----------CTTCHHHHHHHHHTTCCCC
T ss_pred CCCHHHH-HHHHHHHHHHHCCCCEEEEEE-----------ecCCHHHHHHHHHCCCEEE
Confidence 3346554 446677888889999999887 3556688898888998654
No 37
>2cy2_A TTHA1209, probable acetyltransferase; structural genomics, unknown function, NPPSFA; HET: ACO; 2.00A {Thermus thermophilus} SCOP: d.108.1.1 PDB: 1wk4_A*
Probab=41.06 E-value=73 Score=20.79 Aligned_cols=50 Identities=4% Similarity=-0.115 Sum_probs=36.5
Q ss_pred CHHHHHHHHHHHHHHHHHcCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeEEEEEe
Q psy3230 70 SPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIGRIED 131 (151)
Q Consensus 70 t~~Aa~~aa~~~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~~I~D 131 (151)
.-++.. +...+.+.+.+.|+..|.+.+. ..-..+++.+.+.|+......+
T Consensus 103 ~Gig~~-ll~~~~~~~~~~g~~~i~l~~~-----------~~n~~a~~~y~k~Gf~~~~~~~ 152 (174)
T 2cy2_A 103 KGLGRA-LFHEGARLLQAEGYGRMLVWVL-----------KENPKGRGFYEHLGGVLLGERE 152 (174)
T ss_dssp SSHHHH-HHHHHHHHHHHTTCCEEEEEEE-----------TTCHHHHHHHHHTTCEEEEEEE
T ss_pred cCHHHH-HHHHHHHHHHhCCCceEEEEEE-----------CCChhHHHHHHHcCCeeeceEE
Confidence 346554 4456778888899999999883 3346788888899998776544
No 38
>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0
Probab=40.14 E-value=45 Score=25.30 Aligned_cols=43 Identities=12% Similarity=0.061 Sum_probs=32.3
Q ss_pred HHHHHHHHHcCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeEEEEE
Q psy3230 79 QDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIGRIE 130 (151)
Q Consensus 79 ~~~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~~I~ 130 (151)
+..++.+.++|+..|++..- .+...+.+-+.|...||++.++.
T Consensus 26 ~~~l~~~~~~G~~~vEl~~~---------~~~~~~~~~~~l~~~gl~~~~~~ 68 (269)
T 3ngf_A 26 LERFRLAAEAGFGGVEFLFP---------YDFDADVIARELKQHNLTQVLFN 68 (269)
T ss_dssp HHHHHHHHHTTCSEEECSCC---------TTSCHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHcCCCEEEecCC---------ccCCHHHHHHHHHHcCCcEEEEe
Confidence 44667788899999998751 23446666777888999999886
No 39
>1rm1_A Tata-box binding protein; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1
Probab=40.11 E-value=75 Score=25.43 Aligned_cols=49 Identities=16% Similarity=0.264 Sum_probs=36.0
Q ss_pred CeEEEEEcCCCCEEEEEecccceeeccCCCCCHHHHHHHHHHHHHHHHHcCce
Q psy3230 39 DTFVHVTDLSGRETIARITGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGIT 91 (151)
Q Consensus 39 NTiitlTD~~G~~~~~~sSgg~g~k~~~rK~t~~Aa~~aa~~~~~k~~~~gi~ 91 (151)
=.++-+.|++-. ++.|+||-+...+++ +...+..|++.+++.++++|+.
T Consensus 101 gli~Rl~~Pk~t-~lIF~SGKiV~TGak---s~e~a~~A~~~i~~~L~~lg~~ 149 (240)
T 1rm1_A 101 AVIMRIREPKTT-ALIFASGKMVVTGAK---SEDDSKLASRKYARIIQKIGFA 149 (240)
T ss_dssp EEEEEEETTEEE-EEEETTSEEEEEEES---SHHHHHHHHHHHHHHHHHHTCC
T ss_pred eEEEEeCCCcEE-EEEECCCeEEEEecC---CHHHHHHHHHHHHHHHHHcCCC
Confidence 345556677663 466888888777754 5667888999999999999873
No 40
>2i79_A Acetyltransferase, GNAT family; acetyl coenzyme *A, structur genomics, PSI-2, protein structure initiative; HET: ACO; 2.10A {Streptococcus pneumoniae}
Probab=39.85 E-value=86 Score=21.23 Aligned_cols=50 Identities=12% Similarity=0.243 Sum_probs=37.3
Q ss_pred CCHHHHHHHHHHHHHHHHHcC-ceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeEEEEE
Q psy3230 69 ASPYAAMLAAQDVAEKCKTLG-ITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIGRIE 130 (151)
Q Consensus 69 ~t~~Aa~~aa~~~~~k~~~~g-i~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~~I~ 130 (151)
+--++.. +.+.+.+.|.+.+ +..|.+.+. .....+++.+.+.|+....+.
T Consensus 100 g~Gig~~-ll~~~~~~a~~~~~~~~i~l~v~-----------~~N~~A~~~yek~GF~~~g~~ 150 (172)
T 2i79_A 100 NNGLGSL-LLEEAIEWAQASGILRRLQLTVQ-----------TRNQAAVHLYQKHGFVIEGSQ 150 (172)
T ss_dssp TSSHHHH-HHHHHHHHHHHTSSCCEEEEEEE-----------TTCHHHHHHHHHTTCEEEEEE
T ss_pred CCCHHHH-HHHHHHHHHHhcCCeEEEEEEEE-----------CCCHHHHHHHHHCCCEEEeEE
Confidence 3346554 4466778888887 999999983 446688999999999876654
No 41
>3fix_A N-acetyltransferase; termoplasma acidophilum, structural GEN PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.30A {Thermoplasma acidophilum} PDB: 3f0a_A* 3k9u_A* 3ne7_A*
Probab=39.11 E-value=90 Score=21.24 Aligned_cols=50 Identities=8% Similarity=0.083 Sum_probs=36.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeEEEE
Q psy3230 68 EASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIGRI 129 (151)
Q Consensus 68 K~t~~Aa~~aa~~~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~~I 129 (151)
++--++.. +.+.+.+.+.+.|+..|.+.+. ..-..+++.+.+.|++....
T Consensus 123 rg~Gig~~-Ll~~~~~~a~~~g~~~i~l~v~-----------~~n~~a~~~y~k~GF~~~~~ 172 (183)
T 3fix_A 123 THKKIGKT-LLLEAEKIMKKKGILECRLYVH-----------RQNSVGFSFYYKNGFKVEDT 172 (183)
T ss_dssp CCHHHHHH-HHHHHHHHHHHHTCCEEEEEEE-----------TTCHHHHHHHHHTTCEEEEE
T ss_pred cCCCHHHH-HHHHHHHHHHHcCCceEEEEEe-----------cCCHHHHHHHHHcCCEEecc
Confidence 34456554 4466888888899999999883 34567888888999987654
No 42
>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4
Probab=38.37 E-value=80 Score=23.50 Aligned_cols=50 Identities=12% Similarity=0.139 Sum_probs=31.7
Q ss_pred HHHHHHHHHcCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeEEEEE
Q psy3230 79 QDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIGRIE 130 (151)
Q Consensus 79 ~~~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~~I~ 130 (151)
+.+++.+.++|+..|++....... +. -.+...+.+.+.+...|++|.++.
T Consensus 22 ~~~l~~~~~~G~~~vEl~~~~~~~-~~-~~~~~~~~~~~~~~~~gl~~~~~~ 71 (272)
T 2q02_A 22 EAFFRLVKRLEFNKVELRNDMPSG-SV-TDDLNYNQVRNLAEKYGLEIVTIN 71 (272)
T ss_dssp HHHHHHHHHTTCCEEEEETTSTTS-ST-TTTCCHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHcCCCEEEeecccccc-cc-ccccCHHHHHHHHHHcCCeEEech
Confidence 456677888999999997510000 00 012335556667778999999885
No 43
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=38.30 E-value=38 Score=22.97 Aligned_cols=26 Identities=15% Similarity=0.243 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHcCceEEEEEEE
Q psy3230 73 AAMLAAQDVAEKCKTLGITALHIKLR 98 (151)
Q Consensus 73 Aa~~aa~~~~~k~~~~gi~~v~V~vr 98 (151)
-|...-+-+++.++.+||+.+.|.+.
T Consensus 61 qakelleliarllqklgykdinvrvn 86 (96)
T 2jvf_A 61 QAKELLELIARLLQKLGYKDINVRVN 86 (96)
T ss_dssp HHHHHHHHHHHHHHHHTCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCceEEEEc
Confidence 45556677888889999999999994
No 44
>3dr6_A YNCA; acetyltransferase, csgid target, essential gene, IDP00086, structural genomics, center for STRU genomics of infectious diseases; HET: MSE; 1.75A {Salmonella typhimurium} SCOP: d.108.1.1 PDB: 3dr8_A*
Probab=38.26 E-value=82 Score=20.54 Aligned_cols=51 Identities=4% Similarity=0.062 Sum_probs=37.1
Q ss_pred CCHHHHHHHHHHHHHHHHHcCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeEEEEEe
Q psy3230 69 ASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIGRIED 131 (151)
Q Consensus 69 ~t~~Aa~~aa~~~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~~I~D 131 (151)
+.-++.. +...+.+.+.+.|+..+.+.+. ..-..+++.+.+.|+......+
T Consensus 96 g~Gig~~-ll~~~~~~~~~~g~~~i~~~~~-----------~~n~~a~~~y~k~Gf~~~~~~~ 146 (174)
T 3dr6_A 96 GKGLGRK-LLSRLIDEARRCGKHVMVAGIE-----------SQNAASIRLHHSLGFTVTAQMP 146 (174)
T ss_dssp TSSHHHH-HHHHHHHHHHHTTCSEEEEEEE-----------TTCHHHHHHHHHTTCEEEEEEE
T ss_pred cCCHHHH-HHHHHHHHHHHcCCCEEEEEee-----------cCCHHHHHHHHhCCCEEEEEcc
Confidence 3346554 4466778888999999998883 3356788888999998766543
No 45
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Probab=37.83 E-value=50 Score=26.04 Aligned_cols=47 Identities=23% Similarity=0.247 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHcCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeEEEEEecCC
Q psy3230 77 AAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIGRIEDVTP 134 (151)
Q Consensus 77 aa~~~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~~I~D~Tp 134 (151)
+.+.+.+.|+++||+.|.|-= --|.....++..| .|++|+-++-..-
T Consensus 31 tl~la~era~e~~Ik~iVVAS---------~sG~TA~k~~e~~--~~i~lVvVTh~~G 77 (201)
T 1vp8_A 31 TLRLAVERAKELGIKHLVVAS---------SYGDTAMKALEMA--EGLEVVVVTYHTG 77 (201)
T ss_dssp HHHHHHHHHHHHTCCEEEEEC---------SSSHHHHHHHHHC--TTCEEEEEECCTT
T ss_pred HHHHHHHHHHHcCCCEEEEEe---------CCChHHHHHHHHh--cCCeEEEEeCcCC
Confidence 445566788999999887763 3344333344433 6888888875443
No 46
>2fe7_A Probable N-acetyltransferase; structural genomics, pseudomonas aerugi PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa ucbpp-pa14} SCOP: d.108.1.1
Probab=37.51 E-value=85 Score=20.49 Aligned_cols=47 Identities=9% Similarity=-0.061 Sum_probs=33.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeE
Q psy3230 68 EASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKI 126 (151)
Q Consensus 68 K~t~~Aa~~aa~~~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I 126 (151)
++--++.. +.+.+.+.+.+.|+..+.+.+. .....+++.+.+.|+..
T Consensus 101 rg~Gig~~-ll~~~~~~~~~~g~~~i~l~~~-----------~~n~~a~~~y~k~Gf~~ 147 (166)
T 2fe7_A 101 RGVGAGRR-LLRELAREAVANDCGRLEWSVL-----------DWNQPAIDFYRSIGALP 147 (166)
T ss_dssp CC--HHHH-HHHHHHHHHHHTTCSEEEEEEE-----------TTCHHHHHHHHHTTCEE
T ss_pred cCccHHHH-HHHHHHHHHHHCCCCEEEEEEc-----------cCCHHHHHHHHHcCCeE
Confidence 33356554 4466778888999999999883 34567888888889865
No 47
>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}
Probab=37.49 E-value=30 Score=26.48 Aligned_cols=44 Identities=16% Similarity=0.154 Sum_probs=31.3
Q ss_pred HHHHHHHHHcCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeEEEEE
Q psy3230 79 QDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIGRIE 130 (151)
Q Consensus 79 ~~~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~~I~ 130 (151)
+.+++.+.++|+..|++.. ..+....+.+.+.|...|+.|.++.
T Consensus 41 ~~~l~~~~~~G~~~vEl~~--------~~~~~~~~~~~~~l~~~gl~v~~~~ 84 (287)
T 3kws_A 41 NEKLDFMEKLGVVGFEPGG--------GGLAGRVNEIKQALNGRNIKVSAIC 84 (287)
T ss_dssp HHHHHHHHHTTCCEEECBS--------TTCGGGHHHHHHHHTTSSCEECEEE
T ss_pred HHHHHHHHHcCCCEEEecC--------CchHHHHHHHHHHHHHcCCeEEEEe
Confidence 4567788899999999987 2233334445566667899998884
No 48
>1z4e_A Transcriptional regulator; nysgxrc target T2017, GNAT fold, structural genomics, PSI, P structure initiative; 2.00A {Bacillus halodurans} SCOP: d.108.1.1
Probab=37.27 E-value=86 Score=20.62 Aligned_cols=50 Identities=16% Similarity=0.143 Sum_probs=34.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeEEEE
Q psy3230 68 EASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIGRI 129 (151)
Q Consensus 68 K~t~~Aa~~aa~~~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~~I 129 (151)
++.-++..+. +.+.+.|.+.|+..|.+.+. .....+++...+.|++....
T Consensus 98 rg~GiG~~Ll-~~~~~~a~~~g~~~i~l~v~-----------~~N~~a~~~Y~k~GF~~~~~ 147 (153)
T 1z4e_A 98 RGQGIGSQLV-CWAIERAKERGCHLIQLTTD-----------KQRPDALRFYEQLGFKASHE 147 (153)
T ss_dssp TTSSHHHHHH-HHHHHHHHHTTEEEEEEEEE-----------TTCTTHHHHHHHHTCEEEEE
T ss_pred cCCCHHHHHH-HHHHHHHHHcCCCEEEEEEc-----------cCChHHHHHHHHcCCceece
Confidence 3445666544 66778888999999998883 22346777777889877653
No 49
>3igr_A Ribosomal-protein-S5-alanine N-acetyltransferase; fisch MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.00A {Vibrio fischeri} SCOP: d.108.1.0
Probab=36.78 E-value=94 Score=20.80 Aligned_cols=51 Identities=10% Similarity=0.024 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHHHHHHHH-HHcCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeEEEEE
Q psy3230 68 EASPYAAMLAAQDVAEKC-KTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIGRIE 130 (151)
Q Consensus 68 K~t~~Aa~~aa~~~~~k~-~~~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~~I~ 130 (151)
++.-++.. +...+.+.+ .++|+..|.+.+ -..-..+++.+.+.|+......
T Consensus 108 rg~Gig~~-ll~~~~~~a~~~~g~~~i~~~v-----------~~~N~~a~~~y~k~GF~~~g~~ 159 (184)
T 3igr_A 108 QGKGIMRR-AVNVTIDWMFKAQNLHRIMAAY-----------IPRNEKSAKVLAALGFVKEGEA 159 (184)
T ss_dssp TTSSHHHH-HHHHHHHHHHHTSCCSEEEEEE-----------CTTCHHHHHHHHHTTCEEEEEE
T ss_pred ccCcHHHH-HHHHHHHHHHhhCCceEEEEEe-----------cCCCHHHHHHHHHcCCEeeeee
Confidence 33457665 445677777 779999999998 3456788899999999775543
No 50
>2g8y_A Malate/L-lactate dehydrogenases; NAD, E.coli, structural GENO PSI, protein structure initiative, midwest center for struc genomics, MCSG; HET: NAD 1PE; 2.15A {Escherichia coli}
Probab=36.76 E-value=1.9e+02 Score=24.44 Aligned_cols=88 Identities=15% Similarity=0.084 Sum_probs=61.4
Q ss_pred cCCCCEEEEEecccc-eeeccCCCCCHHHHHHHHHHHHHHHHHcCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCC
Q psy3230 46 DLSGRETIARITGGM-KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNM 124 (151)
Q Consensus 46 D~~G~~~~~~sSgg~-g~k~~~rK~t~~Aa~~aa~~~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl 124 (151)
|++.++.+...++.+ .+-+ ..---++++..+.+.++++|++.|+-.|.|+= +.-+|..-..+.++. ..|+
T Consensus 88 ~~~a~p~v~~~~~a~~~vDg-~~g~G~~~~~~am~~aiekAk~~Gig~v~vrn-------s~H~G~~g~y~~~aa-~~Gl 158 (385)
T 2g8y_A 88 QINHHAKTVKEAGAAVTLDG-DRAFGQVAAHEAMALGIEKAHQHGIAAVALHN-------SHHIGRIGYWAEQCA-AAGF 158 (385)
T ss_dssp BTTCCCEEEEEETTEEEEEC-TTBCHHHHHHHHHHHHHHHHHHHSEEEEEEEE-------EECCCCHHHHHHHHH-HTTC
T ss_pred CCCCCeEEEEcCCcEEEEEC-CCCcHHHHHHHHHHHHHHHHHHcCEEEEEEeC-------CCCcchHHHHHHHHH-HCCC
Confidence 455555444555554 3443 33556788899999999999999999888874 267888777776655 4687
Q ss_pred eEEEEEecCC----CCCCCCCC
Q psy3230 125 KIGRIEDVTP----IPSDSTRR 142 (151)
Q Consensus 125 ~I~~I~D~Tp----iphNGCRp 142 (151)
--+..+...| .|++|-+|
T Consensus 159 igi~~tNs~~~~~vaP~GG~~~ 180 (385)
T 2g8y_A 159 VSIHFVSVVGIPMVAPFHGRDS 180 (385)
T ss_dssp EEEEEEEECSCCCBCCTTCSSC
T ss_pred EEEEEecCCCCceeCCCCCCCC
Confidence 6666666655 68887654
No 51
>3pp9_A Putative streptothricin acetyltransferase; toxin production resistance, infectious diseases, structural genomics; HET: MSE ACO; 1.60A {Bacillus anthracis}
Probab=36.64 E-value=99 Score=21.02 Aligned_cols=52 Identities=8% Similarity=0.077 Sum_probs=38.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeEEEEEe
Q psy3230 68 EASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIGRIED 131 (151)
Q Consensus 68 K~t~~Aa~~aa~~~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~~I~D 131 (151)
++.-++.. +.+.+.+.+.++|+..+.+.+. ..-..+++.+.+.|+.......
T Consensus 113 rg~Gig~~-ll~~~~~~~~~~g~~~i~~~~~-----------~~N~~a~~~y~k~Gf~~~~~~~ 164 (187)
T 3pp9_A 113 RTLGVGKR-LIAQAKQWAKEGNMPGIMLETQ-----------NNNVAACKFYEKCGFVIGGFDF 164 (187)
T ss_dssp TTSSHHHH-HHHHHHHHHHHTTCCEEEEEEE-----------TTCHHHHHHHHHTTCEEEEEES
T ss_pred hcCCHHHH-HHHHHHHHHHHCCCCEEEEEEe-----------cCCHHHHHHHHHCCCEEeceEe
Confidence 33456554 4466778888999999999983 3346788888899998876543
No 52
>2oh1_A Acetyltransferase, GNAT family; YP_013287.1, structural genom joint center for structural genomics, JCSG, protein structu initiative; HET: MSE UNL; 1.46A {Listeria monocytogenes str}
Probab=36.57 E-value=93 Score=20.71 Aligned_cols=50 Identities=2% Similarity=-0.023 Sum_probs=36.4
Q ss_pred CCHHHHHHHHHHHHHHHHHcCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeEEEEE
Q psy3230 69 ASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIGRIE 130 (151)
Q Consensus 69 ~t~~Aa~~aa~~~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~~I~ 130 (151)
+.-++.. +.+.+.+.+.+.|+..|.+.+ ......+++.+.+.|+......
T Consensus 117 g~Gig~~-ll~~~~~~a~~~g~~~i~l~~-----------~~~N~~a~~~y~k~GF~~~~~~ 166 (179)
T 2oh1_A 117 GISLSKQ-MIYFAEKLGIEMSVPFIRLDC-----------IESNETLNQMYVRYGFQFSGKK 166 (179)
T ss_dssp TSCHHHH-HHHHHHHHHHHTTCCEEEEEE-----------ETTCHHHHHHHHHTTCEEEEEE
T ss_pred CCCHHHH-HHHHHHHHHHHcCCCEEEEEe-----------cCCcHHHHHHHHHCCCEEeccc
Confidence 3446554 446677888889999999888 2445678888889999876554
No 53
>1mk4_A Hypothetical protein YQJY; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; 1.70A {Bacillus subtilis} SCOP: d.108.1.1
Probab=36.55 E-value=87 Score=20.35 Aligned_cols=49 Identities=12% Similarity=0.103 Sum_probs=36.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeEEE
Q psy3230 68 EASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIGR 128 (151)
Q Consensus 68 K~t~~Aa~~aa~~~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~~ 128 (151)
++.-++.. +...+.+.+.+.|+..+.+.+ -..-..+++.+.+.|+....
T Consensus 81 rg~Gig~~-ll~~~~~~~~~~g~~~i~~~~-----------~~~N~~a~~~y~k~Gf~~~~ 129 (157)
T 1mk4_A 81 RKMQIGKQ-LYDVFIETVKQRGCTRVKCVT-----------SPVNKVSIAYHTKLGFDIEK 129 (157)
T ss_dssp CHHHHHHH-HHHHHHHHHHTTTCCEEEEEE-----------CTTCHHHHHHHHHTTCEECC
T ss_pred cCCCHHHH-HHHHHHHHHHHCCCcEEEEEE-----------cCCCHHHHHHHHHcCCEEcC
Confidence 44456654 446677888889999999988 34456788888899998765
No 54
>3i0p_A Malate dehydrogenase; araerobic parasitic protozoan, amoebic dysentery, ssgcid, NI infectious disease, structural genomics; HET: NAD; 2.60A {Entamoeba histolytica}
Probab=36.52 E-value=1.9e+02 Score=24.24 Aligned_cols=88 Identities=11% Similarity=0.061 Sum_probs=60.2
Q ss_pred cCCCCEEEEEecccc-eeeccCCCCCHHHHHHHHHHHHHHHHHcCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCC
Q psy3230 46 DLSGRETIARITGGM-KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNM 124 (151)
Q Consensus 46 D~~G~~~~~~sSgg~-g~k~~~rK~t~~Aa~~aa~~~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl 124 (151)
|++.++.+...++.+ .+-+ ..---++++..+.+.++++|++.|+-.|.|+= ++-+|..-..+.++. ..|+
T Consensus 69 ~~~a~p~v~~~~~a~~~vDg-~~g~G~~~~~~am~~aiekAk~~Gig~v~vrn-------s~H~G~~g~y~~~aa-~~Gl 139 (365)
T 3i0p_A 69 NPTAKPSIIRETSTTCVLDG-NNGFGHVNGTIGMKMAIEKAKKYGMGMVVVRN-------STHFGIAGYYSLLAA-QEGC 139 (365)
T ss_dssp CTTCCCEEEEECSSEEEEEC-TTCCHHHHHHHHHHHHHHHHHHHSEEEEEEEE-------ECCCSCHHHHHHHHH-HTTE
T ss_pred CCCCCcEEEeecCcEEEEEC-CCCchHHHHHHHHHHHHHHHHHhCEEEEEEec-------CCCcchhHHHHHHHH-HCCC
Confidence 445555444555554 3333 33556788899999999999999999888874 377888777776655 4677
Q ss_pred eEEEEEecCCC--CCCCCCC
Q psy3230 125 KIGRIEDVTPI--PSDSTRR 142 (151)
Q Consensus 125 ~I~~I~D~Tpi--phNGCRp 142 (151)
-=+..+...|+ ||+|-+|
T Consensus 140 igi~~tNs~p~vaP~GG~~~ 159 (365)
T 3i0p_A 140 IGICGTNARSSVAATFGDEP 159 (365)
T ss_dssp EEEEEECCSSCBCCTTCCSC
T ss_pred EEEEEeCCCCeeCCCCCCCC
Confidence 66666665554 7777554
No 55
>1tiq_A Protease synthase and sporulation negative regulatory protein PAI 1; alpha-beta protein, structural genomics, PSI; HET: COA; 1.90A {Bacillus subtilis} SCOP: d.108.1.1
Probab=36.29 E-value=1e+02 Score=21.20 Aligned_cols=50 Identities=6% Similarity=0.004 Sum_probs=36.6
Q ss_pred CHHHHHHHHHHHHHHHHHcCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeEEEEEe
Q psy3230 70 SPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIGRIED 131 (151)
Q Consensus 70 t~~Aa~~aa~~~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~~I~D 131 (151)
.-++.++ -+.+.+.|.+.|+..|.+.+. .....|++...+.|++......
T Consensus 105 ~GiG~~L-l~~~~~~a~~~g~~~i~L~v~-----------~~N~~A~~fY~k~GF~~~g~~~ 154 (180)
T 1tiq_A 105 HGLGKHL-LNKAIEIALERNKKNIWLGVW-----------EKNENAIAFYKKMGFVQTGAHS 154 (180)
T ss_dssp SSHHHHH-HHHHHHHHHHTTCSEEEEEEE-----------TTCHHHHHHHHHTTCEEEEEEE
T ss_pred CCHHHHH-HHHHHHHHHHCCCCEEEEEeh-----------hcCHHHHHHHHHcCCEEcCcEE
Confidence 3465543 466778888999999999882 3456788888899998766543
No 56
>2eui_A Probable acetyltransferase; dimer, structural genomics, PSI, protein structure initiative; 2.80A {Pseudomonas aeruginosa PAO1} SCOP: d.108.1.1
Probab=35.98 E-value=83 Score=20.04 Aligned_cols=47 Identities=6% Similarity=0.034 Sum_probs=33.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeE
Q psy3230 68 EASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKI 126 (151)
Q Consensus 68 K~t~~Aa~~aa~~~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I 126 (151)
++.-++.. +.+.+.+.+.++|+..+.+.+. ..-..+++.+.+.|+..
T Consensus 91 rg~Gig~~-ll~~~~~~~~~~g~~~i~~~~~-----------~~N~~a~~~y~k~Gf~~ 137 (153)
T 2eui_A 91 RRQLVADH-LLQHAKQMARETHAVRMRVSTS-----------VDNEVAQKVYESIGFRE 137 (153)
T ss_dssp CHHHHHHH-HHHHHHHHHHHTTEEEEEEEEE-----------TTCHHHHHHHHTTTCBC
T ss_pred hcCChHHH-HHHHHHHHHHHcCCCEEEEEEe-----------cCCHHHHHHHHHcCCEE
Confidence 44456554 4466778888899999999883 33467888888888764
No 57
>3i9s_A Integron cassette protein; oyster POND, woods HOLE, acetyltransferase, structural genomics, PSI-2, protein structure initiative; 2.20A {Vibrio cholerae}
Probab=35.69 E-value=93 Score=21.09 Aligned_cols=47 Identities=9% Similarity=-0.050 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHHHHHHHHHcCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeEE
Q psy3230 69 ASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIG 127 (151)
Q Consensus 69 ~t~~Aa~~aa~~~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~ 127 (151)
+--++.+ +.+.+.+.+.+.|+..|.+.+. .....+++.+.+.|+...
T Consensus 117 g~Gig~~-ll~~~~~~a~~~g~~~i~l~~~-----------~~N~~a~~~y~k~GF~~~ 163 (183)
T 3i9s_A 117 GKGIGLQ-LMKHLATIAITHNCQRLDWTAE-----------STNPTAGKFYKSIGASLI 163 (183)
T ss_dssp TSCHHHH-HHHHHHHHHHHTTEEEEEEEEE-----------TTCHHHHHHHHHTTCEEC
T ss_pred CCCHHHH-HHHHHHHHHHHcCCCEEEEEEe-----------cCChHHHHHHHHcCCcee
Confidence 3446655 4466788899999999999882 445678888888898754
No 58
>3qxb_A Putative xylose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 1.90A {Rhodospirillum rubrum}
Probab=35.23 E-value=71 Score=24.82 Aligned_cols=43 Identities=14% Similarity=0.135 Sum_probs=29.4
Q ss_pred HHHHHHHHcCceEEEEEEEecCCCcccCCCCC---------hHHHHHHHHhCCCeEEEEE
Q psy3230 80 DVAEKCKTLGITALHIKLRATGGNRTKTPGPG---------AQSALRALARSNMKIGRIE 130 (151)
Q Consensus 80 ~~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~G---------r~~~ik~L~~~gl~I~~I~ 130 (151)
.+.+.+.++|+..|++.+ ..+.+- .+.+-+.|...||.|.++.
T Consensus 39 ~~~~~a~~~G~~~vEl~~--------~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~i~~~~ 90 (316)
T 3qxb_A 39 LAGLVRDDLGLEYVQYTY--------DLTDPWWPDIERDRRAIAYAKAFRKAGLTIESTF 90 (316)
T ss_dssp HHHHHHHTSCCCEEEEET--------TTSCTTSCHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHcCCCEEEeec--------cccCccccccchhhHHHHHHHHHHHcCCeEEEee
Confidence 345677889999999987 233321 2334556678899998874
No 59
>1s3z_A Aminoglycoside 6'-N-acetyltransferase; GNAT, aminoglycoside ribostamycin; HET: COA RIO; 2.00A {Salmonella enteritidis} SCOP: d.108.1.1 PDB: 1s5k_A* 1s60_A* 2vbq_A*
Probab=35.04 E-value=98 Score=20.49 Aligned_cols=47 Identities=9% Similarity=-0.002 Sum_probs=34.8
Q ss_pred CHHHHHHHHHHHHHHHHHcCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeEEE
Q psy3230 70 SPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIGR 128 (151)
Q Consensus 70 t~~Aa~~aa~~~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~~ 128 (151)
--++.. +.+.+.+.+.+.|+..|.+.+ ......+++.+.+.|+....
T Consensus 110 ~Gig~~-ll~~~~~~~~~~g~~~i~l~~-----------~~~N~~a~~~y~k~GF~~~~ 156 (165)
T 1s3z_A 110 RGVAKQ-LIAAVQRWGTNKGCREMASDT-----------SPENTISQKVHQALGFEETE 156 (165)
T ss_dssp SSHHHH-HHHHHHHHHHHTTCSEEEEEE-----------CTTCHHHHHHHHHTTCEEEE
T ss_pred CcHHHH-HHHHHHHHHHHCCCCEEEEec-----------CcCCHHHHHHHHHcCCeEee
Confidence 346554 446677888889999999998 24456788888899987654
No 60
>1u6m_A Acetyltransferase, GNAT family; structural genomics, PSI, protein structure initiative; 2.40A {Enterococcus faecalis} SCOP: d.108.1.1
Probab=34.94 E-value=78 Score=22.25 Aligned_cols=52 Identities=17% Similarity=0.112 Sum_probs=37.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeEEEEEe
Q psy3230 68 EASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIGRIED 131 (151)
Q Consensus 68 K~t~~Aa~~aa~~~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~~I~D 131 (151)
++.-++.++. +.+.+.|++.|+..|.+.+. .....+++...+.|++.....+
T Consensus 125 rg~GiG~~Ll-~~~~~~a~~~g~~~i~L~v~-----------~~N~~A~~fY~k~GF~~~~~~~ 176 (199)
T 1u6m_A 125 RGMGIGSKLL-DALPEVAKASGKQALGLNVD-----------FDNPGARKLYASKGFKDVTTMT 176 (199)
T ss_dssp TTSSHHHHHH-HTHHHHHHTTTCSEEEEEEE-----------TTCHHHHHHHHTTTCEEEEEEE
T ss_pred cCCCHHHHHH-HHHHHHHHHcCCCEEEEEEe-----------cCCHHHHHHHHHCCCEEccEEE
Confidence 3344655544 56888899999999999983 4456788888889998766544
No 61
>2q7b_A Acetyltransferase, GNAT family; NP_689019.1, structural GEN joint center for structural genomics, JCSG; HET: MSE FLC; 2.00A {Streptococcus agalactiae 2603V}
Probab=34.85 E-value=1.1e+02 Score=20.99 Aligned_cols=47 Identities=4% Similarity=-0.108 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHcCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeEEEE
Q psy3230 71 PYAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIGRI 129 (151)
Q Consensus 71 ~~Aa~~aa~~~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~~I 129 (151)
-++.. +.+.+.+.+.+.|+..|.+.+. ..-..+++.+.+.|+.....
T Consensus 113 Gig~~-ll~~~~~~a~~~g~~~i~l~~~-----------~~N~~a~~~y~k~GF~~~~~ 159 (181)
T 2q7b_A 113 RLGRK-LFERFMLFARASKFTRIVLDTP-----------EKEKRSHFFYENQGFKQITR 159 (181)
T ss_dssp CHHHH-HHHHHHHHHHHTTCCEEEEEEE-----------TTCHHHHHHHHTTTCEEECT
T ss_pred cHHHH-HHHHHHHHHHHCCCcEEEEEec-----------CCCHHHHHHHHHCCCEEeee
Confidence 46554 4466778888899999999883 33457888888999976543
No 62
>3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=34.60 E-value=95 Score=24.27 Aligned_cols=51 Identities=12% Similarity=0.089 Sum_probs=33.0
Q ss_pred HHHHHHHHHHcCceEEEEEEEecCCCcccCCCC--------ChHHHHHHHHhCCCeEEEEE
Q psy3230 78 AQDVAEKCKTLGITALHIKLRATGGNRTKTPGP--------GAQSALRALARSNMKIGRIE 130 (151)
Q Consensus 78 a~~~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~--------Gr~~~ik~L~~~gl~I~~I~ 130 (151)
.+.+++.+.++|+..|++..... ...+-.+. -.+.+-+.|...||.|.++.
T Consensus 38 l~~~l~~aa~~G~~~VEl~~~~~--~~~~~~~~~p~~~~~~~~~~l~~~l~~~GL~i~~~~ 96 (305)
T 3obe_A 38 MPNGLNRLAKAGYTDLEIFGYRE--DTGKFGDYNPKNTTFIASKDYKKMVDDAGLRISSSH 96 (305)
T ss_dssp HHHHHHHHHHHTCCEEEECCBCT--TTCCBCCC----CCCBCHHHHHHHHHHTTCEEEEEB
T ss_pred HHHHHHHHHHcCCCEEEeccccc--ccccccCcCcccccccCHHHHHHHHHHCCCeEEEee
Confidence 36678889999999999986200 00000122 34455666778999999883
No 63
>2i6c_A Putative acetyltransferase; GNAT family, structural genomic, structur genomics, PSI-2, protein structure initiative; HET: MSE EPE; 1.30A {Pseudomonas aeruginosa} SCOP: d.108.1.1 PDB: 3pgp_A*
Probab=34.50 E-value=94 Score=20.11 Aligned_cols=52 Identities=8% Similarity=0.004 Sum_probs=37.8
Q ss_pred CCCHHHHHHHHHHHHHHHHH-cCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeEEEEEe
Q psy3230 68 EASPYAAMLAAQDVAEKCKT-LGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIGRIED 131 (151)
Q Consensus 68 K~t~~Aa~~aa~~~~~k~~~-~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~~I~D 131 (151)
++.-++.. +.+.+.+.+.+ +|+..|.+.+. ..-..+++.+.+.|+.......
T Consensus 88 rg~Gig~~-l~~~~~~~~~~~~g~~~i~l~~~-----------~~n~~a~~~y~k~Gf~~~~~~~ 140 (160)
T 2i6c_A 88 RGLGVARY-LIGVMENLAREQYKARLMKISCF-----------NANAAGLLLYTQLGYQPRAIAE 140 (160)
T ss_dssp TTTTHHHH-HHHHHHHHHHHHHCCSEEEEEEE-----------TTCHHHHHHHHHTTCEEEEEEE
T ss_pred cCCCHHHH-HHHHHHHHHHhhCCccEEEEEEe-----------cCCHHHHHHHHHcCCEEccccc
Confidence 33456654 44667788888 79999999883 3456788888999998877543
No 64
>4evy_A Aminoglycoside N(6')-acetyltransferase type 1; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: TOY; 1.77A {Acinetobacter haemolyticus} PDB: 4f0y_A 4e8o_A
Probab=34.25 E-value=1e+02 Score=20.57 Aligned_cols=49 Identities=12% Similarity=0.002 Sum_probs=35.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeEEE
Q psy3230 68 EASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIGR 128 (151)
Q Consensus 68 K~t~~Aa~~aa~~~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~~ 128 (151)
++--++..+ .+.+.+.+.+.|+..|.+.+. .....+++.+.+.|+....
T Consensus 108 rg~Gig~~L-l~~~~~~a~~~g~~~i~l~~~-----------~~N~~a~~~y~k~GF~~~~ 156 (166)
T 4evy_A 108 RRSGVATML-IRQAEVWAKQFSCTEFASDAA-----------LDNVISHAMHRSLGFQETE 156 (166)
T ss_dssp TTSSHHHHH-HHHHHHHHHHTTCCEEEEEEE-----------TTCHHHHHHHHHTTCEEEE
T ss_pred hcCCHHHHH-HHHHHHHHHHcCCCEEEEecC-----------CCCHHHHHHHHHcCCEecc
Confidence 334466554 466788889999999999983 3356788888899987643
No 65
>2x7b_A N-acetyltransferase SSO0209; HET: COA; 1.95A {Sulfolobus solfataricus}
Probab=33.97 E-value=1.1e+02 Score=20.76 Aligned_cols=52 Identities=12% Similarity=0.103 Sum_probs=38.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHc-CceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeEEEEEe
Q psy3230 68 EASPYAAMLAAQDVAEKCKTL-GITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIGRIED 131 (151)
Q Consensus 68 K~t~~Aa~~aa~~~~~k~~~~-gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~~I~D 131 (151)
++.-++.. +.+.+.+.+.+. |+..|.+.+. .....+++...+.|++......
T Consensus 100 rg~GiG~~-Ll~~~~~~a~~~~g~~~i~l~v~-----------~~N~~A~~~Yek~GF~~~~~~~ 152 (168)
T 2x7b_A 100 RRKGIATT-LLEASMKSMKNDYNAEEIYLEVR-----------VSNYPAIALYEKLNFKKVKVLK 152 (168)
T ss_dssp TTSSHHHH-HHHHHHHHHHHTTCCSEEEEEEE-----------TTCHHHHHHHHHTTCEEEEEET
T ss_pred hccCHHHH-HHHHHHHHHHHhcCeeEEEEEEE-----------eCCHHHHHHHHHCCCEEEEEee
Confidence 33446554 446677888887 9999999983 3456788988999998876653
No 66
>2dxq_A AGR_C_4057P, acetyltransferase; structural genomics, PSI-2, protein struc initiative, midwest center for structural genomics, MCSG; 1.80A {Agrobacterium tumefaciens str}
Probab=33.68 E-value=1e+02 Score=20.42 Aligned_cols=45 Identities=7% Similarity=0.025 Sum_probs=34.0
Q ss_pred CCHHHHHHHHHHHHHHHHHcCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCe
Q psy3230 69 ASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMK 125 (151)
Q Consensus 69 ~t~~Aa~~aa~~~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~ 125 (151)
+--++.. +.+.+.+.|.++|+..|.+.+ ......+++...+.|+.
T Consensus 95 g~GiG~~-Ll~~~~~~a~~~g~~~i~l~v-----------~~~N~~A~~fY~k~GF~ 139 (150)
T 2dxq_A 95 GRGYGRT-VVRHAIETAFGANCYKVMLLT-----------GRHDPAVHAFYESCGFV 139 (150)
T ss_dssp TSSHHHH-HHHHHHHHHHHTTCSEEEEEE-----------CCCCHHHHHHHHHTTCE
T ss_pred CCCHHHH-HHHHHHHHHHHCCCCEEEEEe-----------CCCChHHHHHHHHcCCc
Confidence 3346554 446678888899999999988 34567788888889987
No 67
>1yr0_A AGR_C_1654P, phosphinothricin acetyltransferase; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.00A {Agrobacterium tumefaciens str} SCOP: d.108.1.1
Probab=33.48 E-value=1.1e+02 Score=20.68 Aligned_cols=50 Identities=6% Similarity=0.058 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeEEEE
Q psy3230 68 EASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIGRI 129 (151)
Q Consensus 68 K~t~~Aa~~aa~~~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~~I 129 (151)
++.-++.. +.+.+.+.+.++|+..|.+.+. .....+++.+.+.|+.....
T Consensus 96 rg~Gig~~-ll~~~~~~a~~~g~~~i~l~v~-----------~~N~~a~~~y~k~GF~~~g~ 145 (175)
T 1yr0_A 96 RGHGIGKR-LMQALIDHAGGNDVHVLIAAIE-----------AENTASIRLHESLGFRVVGR 145 (175)
T ss_dssp TTSSHHHH-HHHHHHHHHHTTTCCEEEEEEE-----------TTCHHHHHHHHHTTCEEEEE
T ss_pred cCCCHHHH-HHHHHHHHHHhCCccEEEEEec-----------CCCHHHHHHHHHCCCEEEEE
Confidence 44457654 4466778888899999998882 33567888889999976543
No 68
>2z10_A Ribosomal-protein-alanine acetyltransferase; alpha/beta protein, acyltransferase, structural genomics, NPPSFA; HET: IYR; 1.77A {Thermus thermophilus} PDB: 2z0z_A* 2z11_A* 2zxv_A*
Probab=33.04 E-value=1.2e+02 Score=20.84 Aligned_cols=52 Identities=13% Similarity=0.026 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHc-CceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeEEEEEe
Q psy3230 68 EASPYAAMLAAQDVAEKCKTL-GITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIGRIED 131 (151)
Q Consensus 68 K~t~~Aa~~aa~~~~~k~~~~-gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~~I~D 131 (151)
++.-++.. +...+.+.|.+. |+..|.+.+. ..-..+++.+.+.|+.......
T Consensus 101 rg~Gig~~-ll~~~~~~a~~~~g~~~i~~~v~-----------~~N~~a~~~y~k~GF~~~g~~~ 153 (194)
T 2z10_A 101 WGSPANKE-AKYLLLRHAFEVLRAERVQFKVD-----------LRNERSQRALEALGAVREGVLR 153 (194)
T ss_dssp TTSSHHHH-HHHHHHHHHHHTSCCSEEEEEEE-----------TTCHHHHHHHHHHTCEEEEEEE
T ss_pred hCCcHHHH-HHHHHHHHHHhhCCceEEEEEec-----------CCCHHHHHHHHHcCCcEEEecc
Confidence 34456654 445577777774 9999999983 4456788888889997655443
No 69
>2r1i_A GCN5-related N-acetyltransferase; YP_831484.1, putative acetyltransferase, arthrobacter SP. FB acetyltransferase (GNAT) family; HET: MSE; 1.65A {Arthrobacter SP}
Probab=31.96 E-value=1.1e+02 Score=20.18 Aligned_cols=45 Identities=11% Similarity=0.045 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHcCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeEE
Q psy3230 71 PYAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIG 127 (151)
Q Consensus 71 ~~Aa~~aa~~~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~ 127 (151)
-++.. +.+.+.+.+.+.|+..|.+.+. ..-..+++.+.+.|+...
T Consensus 113 Gig~~-ll~~~~~~a~~~g~~~i~~~~~-----------~~n~~a~~~y~k~Gf~~~ 157 (172)
T 2r1i_A 113 RLGSA-LLAASCGLVRSRGGALLEINVD-----------GEDTDARRFYEARGFTNT 157 (172)
T ss_dssp HHHHH-HHHHHHHHHHHTTCCEEEEEEE-----------TTCHHHHHHHHTTTCBSS
T ss_pred CHHHH-HHHHHHHHHHHCCCCEEEEEEc-----------CCCHHHHHHHHHCCCEec
Confidence 45544 4466778888899999999883 335577888888888654
No 70
>2zvr_A Uncharacterized protein TM_0416; hyperthermophIle, ketohexose 3-epimeras tagatose 3-epimerase, isomerase; 2.20A {Thermotoga maritima}
Probab=31.83 E-value=53 Score=25.10 Aligned_cols=46 Identities=20% Similarity=0.138 Sum_probs=32.7
Q ss_pred HHHHHHHHHcCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeEEEEEe
Q psy3230 79 QDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIGRIED 131 (151)
Q Consensus 79 ~~~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~~I~D 131 (151)
+.+++.+.++|+..|++... .......+.+.+.|...|+.+.++.=
T Consensus 44 ~~~l~~~~~~G~~~vEl~~~-------~~~~~~~~~~~~~l~~~gl~~~~~~~ 89 (290)
T 2zvr_A 44 RKGMELAKRVGYQAVEIAVR-------DPSIVDWNEVKILSEELNLPICAIGT 89 (290)
T ss_dssp HHHHHHHHHHTCSEEEEECS-------CGGGSCHHHHHHHHHHHTCCEEEEEC
T ss_pred HHHHHHHHHhCCCEEEEcCC-------CcchhhHHHHHHHHHHcCCeEEEEec
Confidence 55677888899999999872 11123445566667788999988863
No 71
>2x06_A L-sulfolactate dehydrogenase; oxidoreductase, hyperthermostable, coenzyme M, methanogens, coenzyme M biosynthesis; HET: NAD; 2.50A {Methanocaldococcus jannaschii}
Probab=31.74 E-value=2.2e+02 Score=23.62 Aligned_cols=88 Identities=13% Similarity=0.103 Sum_probs=58.8
Q ss_pred cCCCCEEEEEecccc-eeeccCCCCCHHHHHHHHHHHHHHHHHcCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCC
Q psy3230 46 DLSGRETIARITGGM-KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNM 124 (151)
Q Consensus 46 D~~G~~~~~~sSgg~-g~k~~~rK~t~~Aa~~aa~~~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl 124 (151)
|++.++.+...++.+ ..-+ ..---+.++..+.+.++++|++.|+-.|.|+= +.-+|..-..+.++. ..|+
T Consensus 62 ~~~~~~~i~~~~~a~~~vDg-~~g~G~~~~~~a~~~ai~~Ak~~Gi~~v~v~n-------s~H~G~~g~y~~~aa-~~Gl 132 (344)
T 2x06_A 62 NPKPDIKIVKESPATAVIDG-DLGLGQVVGKKAMELAIKKAKNVGVGVVATRN-------ANHFGIAGYYSELAM-NQDM 132 (344)
T ss_dssp BSSCCCEEEEECSSEEEEEC-TTBCHHHHHHHHHHHHHHHHHHHSEEEEEEES-------CCCCSCTHHHHHHHH-TTTS
T ss_pred CCCCCeEEEeccCcEEEEEC-CCCccHHHHHHHHHHHHHHHHhcCeEEEEecc-------CccccchHHHHHHHH-hcCc
Confidence 444555444555554 3333 23445778888999999999999999988873 366787777776654 5677
Q ss_pred eEEEEEecCC--CCCCCCCC
Q psy3230 125 KIGRIEDVTP--IPSDSTRR 142 (151)
Q Consensus 125 ~I~~I~D~Tp--iphNGCRp 142 (151)
--+..+...| .||+|-+|
T Consensus 133 igi~~tn~~p~vaP~Gg~~~ 152 (344)
T 2x06_A 133 IGITITNTEPAMAPFGGKEK 152 (344)
T ss_dssp EEEEEECCSSCBCCTTBCSC
T ss_pred EEEEecCCCceeeccCCcCc
Confidence 6556665555 47777554
No 72
>2fia_A Acetyltransferase; structural genomics, PSI, protein structu initiative, midwest center for structural genomics, MCSG; 2.60A {Enterococcus faecalis} SCOP: d.108.1.1
Probab=31.33 E-value=1.1e+02 Score=19.80 Aligned_cols=51 Identities=6% Similarity=0.043 Sum_probs=37.2
Q ss_pred CHHHHHHHHHHHHHHHHHcCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeEEEEEec
Q psy3230 70 SPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIGRIEDV 132 (151)
Q Consensus 70 t~~Aa~~aa~~~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~~I~D~ 132 (151)
.-++.. +.+.+.+.+.+.|+..+.+.+. ..-..+++.+.+.|+......+.
T Consensus 90 ~Gig~~-ll~~~~~~~~~~g~~~i~~~~~-----------~~N~~a~~~y~k~Gf~~~~~~~~ 140 (162)
T 2fia_A 90 KGYGSL-LFHELEKRAVWEGRRKMYAQTN-----------HTNHRMIRFFESKGFTKIHESLQ 140 (162)
T ss_dssp TTHHHH-HHHHHHHHHHTTTCCEEEEEEE-----------TTCHHHHHHHHHTTCEEEEEECC
T ss_pred CCHHHH-HHHHHHHHHHHCCCCEEEEEec-----------CCCHHHHHHHHHCCCEEEeeEee
Confidence 346554 4456778888899999999882 34567888888999987766544
No 73
>2b5g_A Diamine acetyltransferase 1; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: ALY; 1.70A {Homo sapiens} SCOP: d.108.1.1 PDB: 2b4d_A* 2jev_A* 2g3t_A 2f5i_A 2b3u_A 2b3v_A* 2b4b_A* 2b58_A* 2fxf_A* 3bj7_A* 3bj8_A*
Probab=31.30 E-value=1.1e+02 Score=20.09 Aligned_cols=46 Identities=4% Similarity=0.008 Sum_probs=33.1
Q ss_pred CHHHHHHHHHHHHHHHHHcCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeEE
Q psy3230 70 SPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIG 127 (151)
Q Consensus 70 t~~Aa~~aa~~~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~ 127 (151)
.-++.. +...+.+.+.+.|+..|.+.+. ..-..+++.+.+.|+...
T Consensus 103 ~Gig~~-ll~~~~~~~~~~g~~~i~l~~~-----------~~N~~a~~~y~k~Gf~~~ 148 (171)
T 2b5g_A 103 FGIGSE-ILKNLSQVAMRCRCSSMHFLVA-----------EWNEPSINFYKRRGASDL 148 (171)
T ss_dssp SSHHHH-HHHHHHHHHHHHTCSEEEEEEE-----------TTCHHHHHHHHTTTCEEH
T ss_pred CCHHHH-HHHHHHHHHHHCCCCEEEEEEc-----------ccCHHHHHHHHHcCCEec
Confidence 346554 4466778888899999999883 335677888888898653
No 74
>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}
Probab=29.80 E-value=64 Score=27.76 Aligned_cols=61 Identities=16% Similarity=0.248 Sum_probs=38.8
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHcCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeEEEEEecCC
Q psy3230 65 DRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIGRIEDVTP 134 (151)
Q Consensus 65 ~~rK~t~~Aa~~aa~~~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~~I~D~Tp 134 (151)
++...|-|....+++.+++.. ...++...|.| .|+|-=-..+.+.|.+.|.+|+.|.|.+-
T Consensus 192 ~r~~aTg~Gv~~~~~~~~~~~-g~~l~gk~vaV--------qG~GnVG~~~a~~L~~~GakVVavsD~~G 252 (419)
T 3aoe_E 192 GRDDAAGLGALLVLEALAKRR-GLDLRGARVVV--------QGLGQVGAAVALHAERLGMRVVAVATSMG 252 (419)
T ss_dssp SCSCHHHHHHHHHHHHHHHHH-TCCCTTCEEEE--------ECCSHHHHHHHHHHHHTTCEEEEEEETTE
T ss_pred CCccchHHHHHHHHHHHHHhc-CCCccCCEEEE--------ECcCHHHHHHHHHHHHCCCEEEEEEcCCC
Confidence 343556666655555555442 23344566777 47775344455778889999999999853
No 75
>3lod_A Putative acyl-COA N-acyltransferase; structural genomics, PSI2, MCSG, structure initiative; 2.50A {Klebsiella pneumoniae subsp}
Probab=29.76 E-value=1.2e+02 Score=19.79 Aligned_cols=49 Identities=8% Similarity=0.099 Sum_probs=35.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeEEE
Q psy3230 68 EASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIGR 128 (151)
Q Consensus 68 K~t~~Aa~~aa~~~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~~ 128 (151)
++.-++.. +.+.+.+.+.+.|+..|.+.+. ..-..+++.+.+.|+....
T Consensus 87 rg~Gig~~-ll~~~~~~~~~~g~~~i~l~~~-----------~~n~~a~~~y~~~GF~~~~ 135 (162)
T 3lod_A 87 RGQQLGEK-LLAALEAKARQRDCHTLRLETG-----------IHQHAAIALYTRNGYQTRC 135 (162)
T ss_dssp CSSSHHHH-HHHHHHHHHHTTTCCEEEEEEE-----------TTCHHHHHHHHHTTCEEEC
T ss_pred cCCCHHHH-HHHHHHHHHHHCCCcEEEEEec-----------CCCHHHHHHHHHcCCEEcc
Confidence 34456655 4466888888899999999883 3356688888889987653
No 76
>2r48_A Phosphotransferase system (PTS) mannose-specific iibca component; PTS system, fructose specific IIB PFAM02379, PSI-2, MCSG; 1.80A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=29.41 E-value=63 Score=22.69 Aligned_cols=26 Identities=15% Similarity=0.483 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHcCceEEEEEEEec
Q psy3230 74 AMLAAQDVAEKCKTLGITALHIKLRAT 100 (151)
Q Consensus 74 a~~aa~~~~~k~~~~gi~~v~V~vr~~ 100 (151)
.++|++.+-+.++++|+. +.|..+|.
T Consensus 18 TymAaeaL~~aA~~~G~~-ikVEtqGs 43 (106)
T 2r48_A 18 TYMAAENLQKAADRLGVS-IKVETQGG 43 (106)
T ss_dssp HHHHHHHHHHHHHHHTCE-EEEEEEET
T ss_pred HHHHHHHHHHHHHHCCCe-EEEEecCC
Confidence 457788888889999987 88888764
No 77
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A
Probab=29.38 E-value=78 Score=23.53 Aligned_cols=50 Identities=10% Similarity=0.104 Sum_probs=30.5
Q ss_pred HHHHHHHHHcCceEEEEE-EEecCCCcccCCCCChHHHHHHHHhCCCeEEEEEe
Q psy3230 79 QDVAEKCKTLGITALHIK-LRATGGNRTKTPGPGAQSALRALARSNMKIGRIED 131 (151)
Q Consensus 79 ~~~~~k~~~~gi~~v~V~-vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~~I~D 131 (151)
+.+++.+.++|+..|++. ..... .+. -....+.+.+.|...|+.+.++.-
T Consensus 17 ~~~l~~~~~~G~~~vEl~~~~~~~-~~~--~~~~~~~~~~~l~~~gl~~~~~~~ 67 (278)
T 1i60_A 17 KLDLELCEKHGYDYIEIRTMDKLP-EYL--KDHSLDDLAEYFQTHHIKPLALNA 67 (278)
T ss_dssp HHHHHHHHHTTCSEEEEETTTHHH-HHT--TSSCHHHHHHHHHTSSCEEEEEEE
T ss_pred HHHHHHHHHhCCCEEEEccHHHHH-HHh--ccCCHHHHHHHHHHcCCCeeeecc
Confidence 445677778999999998 52100 000 023345566667778999887753
No 78
>1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics, PSI, structure initiative; 1.63A {Escherichia coli} SCOP: c.1.15.5
Probab=29.07 E-value=56 Score=24.26 Aligned_cols=42 Identities=7% Similarity=0.158 Sum_probs=30.0
Q ss_pred HHHHHHHHcCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeEEEEE
Q psy3230 80 DVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIGRIE 130 (151)
Q Consensus 80 ~~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~~I~ 130 (151)
..++.+.++|+..|++..- .+...+.+-+.|...|+++.++.
T Consensus 19 ~~l~~~~~~G~~~vEl~~~---------~~~~~~~~~~~l~~~gl~~~~~~ 60 (260)
T 1k77_A 19 ERFAAARKAGFDAVEFLFP---------YNYSTLQIQKQLEQNHLTLALFN 60 (260)
T ss_dssp GHHHHHHHHTCSEEECSCC---------TTSCHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHhCCCEEEecCC---------CCCCHHHHHHHHHHcCCceEEEe
Confidence 3456677889999998751 23345556677788999999875
No 79
>2cnt_A Modification of 30S ribosomal subunit protein S18; N-alpha acetylation, GCN5-N-acetyltransferase, ribosomal Pro acetyltransferase, GNAT; HET: COA; 2.4A {Salmonella typhimurium} PDB: 2cnm_A* 2cns_A*
Probab=28.72 E-value=1.3e+02 Score=20.02 Aligned_cols=48 Identities=15% Similarity=0.264 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHHHHHHHHcCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeEEEE
Q psy3230 70 SPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIGRI 129 (151)
Q Consensus 70 t~~Aa~~aa~~~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~~I 129 (151)
.-++.. +...+.+.+.+.|+..|.+.+. ..-..+++.+.+.|+.....
T Consensus 78 ~Gig~~-ll~~~~~~~~~~g~~~i~l~v~-----------~~N~~a~~~y~k~GF~~~~~ 125 (160)
T 2cnt_A 78 RGLGRM-LLEHLIDELETRGVVTLWLEVR-----------ASNAAAIALYESLGFNEATI 125 (160)
T ss_dssp SSHHHH-HHHHHHHHHHHTTCCEEEEEEE-----------TTCHHHHHHHHHHTCEEEEE
T ss_pred CCHHHH-HHHHHHHHHHHcCCcEEEEEEe-----------cCCHHHHHHHHHCCCEEEEE
Confidence 346654 4466778888899999999883 33457788888889876543
No 80
>2vzy_A RV0802C; transferase, GCN5-related N-acetyltransferase, succinyltransferase; HET: FLC; 2.00A {Mycobacterium tuberculosis} PDB: 2vzz_A*
Probab=28.34 E-value=1.6e+02 Score=20.74 Aligned_cols=51 Identities=8% Similarity=0.024 Sum_probs=36.7
Q ss_pred CCHHHHHHHHHHHHHHHHH-cCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeEEEEEe
Q psy3230 69 ASPYAAMLAAQDVAEKCKT-LGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIGRIED 131 (151)
Q Consensus 69 ~t~~Aa~~aa~~~~~k~~~-~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~~I~D 131 (151)
+.-++.. +...+.+.+.+ +|+..|.+.+. ..-..+++.+.+.|+.......
T Consensus 119 gkGig~~-ll~~l~~~a~~~~g~~~i~~~v~-----------~~N~~a~~~y~k~GF~~~g~~~ 170 (218)
T 2vzy_A 119 GHGYGTE-MRAAVLYFAFAELEAQVATSRSF-----------VDNPASIAVSRRNGYRDNGLDR 170 (218)
T ss_dssp TSSHHHH-HHHHHHHHHHHTSCCSEEEEEEE-----------TTCHHHHHHHHHTTCEEEEEEE
T ss_pred CCCHHHH-HHHHHHHHHHhhCCceEEEEEec-----------cCCHHHHHHHHHCCCEEeeeee
Confidence 3346554 44667778877 89999999983 4456788989999997655543
No 81
>4h8a_A Ureidoglycolate dehydrogenase; rossmann fold, oxidoreductase; HET: NAI; 1.64A {Escherichia coli} PDB: 4fju_A* 4fjs_A* 1xrh_A
Probab=28.28 E-value=2.5e+02 Score=23.19 Aligned_cols=88 Identities=11% Similarity=0.084 Sum_probs=59.9
Q ss_pred cCCCCEEEEEecccc-eeeccCCCCCHHHHHHHHHHHHHHHHHcCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCC
Q psy3230 46 DLSGRETIARITGGM-KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNM 124 (151)
Q Consensus 46 D~~G~~~~~~sSgg~-g~k~~~rK~t~~Aa~~aa~~~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl 124 (151)
|++.++.+...++.+ .+-+ ..---++++..+.+.++++|++.|+-.|.|+= ++-+|..-..+.++.. .|+
T Consensus 64 ~~~a~p~v~~~~~a~~~vDg-~~g~G~~~~~~am~~aiekAk~~Gig~v~vrn-------s~H~G~~g~y~~~aa~-~Gl 134 (339)
T 4h8a_A 64 NREPEFRLEETGPCSAILHA-DNAAGQVAAKMGMEHAIKTAQQNGVAVVGISR-------MGHSGAISYFVQQAAR-AGF 134 (339)
T ss_dssp CSSCCCEEEEEETTEEEEEC-TTCCHHHHHHHHHHHHHHHHHHHSEEEEEEEE-------ECCCCCTHHHHHHHHH-TTS
T ss_pred CCCCCeEEEEccCcEEEEEC-CCCchHHHHHHHHHHHHHHHHHhCEEEEEEec-------CCCcchhHHHHHHHHH-CCC
Confidence 444555444555554 3333 33556788899999999999999999888875 3778988888877554 677
Q ss_pred eEEEEEecCC--CCCCCCCC
Q psy3230 125 KIGRIEDVTP--IPSDSTRR 142 (151)
Q Consensus 125 ~I~~I~D~Tp--iphNGCRp 142 (151)
-=+..+...| .||+|-+|
T Consensus 135 igi~~tNs~p~vaP~Gg~~~ 154 (339)
T 4h8a_A 135 IGISMCQSDPMVVPFGGAEI 154 (339)
T ss_dssp EEEEEECCCSCBCCTTBSSC
T ss_pred EEEEEeCCCCeeCCCCCCCC
Confidence 6555555443 47777554
No 82
>2r4q_A Phosphotransferase system (PTS) fructose-specific iiabc component; fructose specific IIB subunit, PF structural genomics, PSI-2; HET: MSE; 1.60A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=28.17 E-value=63 Score=22.67 Aligned_cols=26 Identities=27% Similarity=0.571 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHcCceEEEEEEEec
Q psy3230 74 AMLAAQDVAEKCKTLGITALHIKLRAT 100 (151)
Q Consensus 74 a~~aa~~~~~k~~~~gi~~v~V~vr~~ 100 (151)
.++|++.+-+.++++|+. +.|..+|.
T Consensus 18 TymAaeaL~~aA~~~G~~-ikVEtqGs 43 (106)
T 2r4q_A 18 TFMAADALKEKAKELGVE-IKVETNGS 43 (106)
T ss_dssp HHHHHHHHHHHHHHHTCC-EEEEEEET
T ss_pred HHHHHHHHHHHHHHCCCe-EEEEecCC
Confidence 346777788888899998 88888764
No 83
>2bei_A Diamine acetyltransferase 2; SSAT2, BC011751, AAH11751, thialysine N-acetyltransferase, structural genomics, protein structure initiative, PSI; HET: ACO; 1.84A {Homo sapiens} SCOP: d.108.1.1 PDB: 2q4v_A*
Probab=28.02 E-value=1.4e+02 Score=20.28 Aligned_cols=47 Identities=13% Similarity=0.101 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeE
Q psy3230 68 EASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKI 126 (151)
Q Consensus 68 K~t~~Aa~~aa~~~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I 126 (151)
++--++.++ -+.+.+.|.+.|+..|.+.+. .....+++...+.|++.
T Consensus 101 rg~GiG~~L-l~~~~~~a~~~g~~~i~L~v~-----------~~N~~A~~fY~k~GF~~ 147 (170)
T 2bei_A 101 RGQGIGSKI-IKKVAEVALDKGCSQFRLAVL-----------DWNQRAMDLYKALGAQD 147 (170)
T ss_dssp CSSSHHHHH-HHHHHHHHHHTTCCEEEEEEE-----------TTCHHHHHHHHHTTCEE
T ss_pred cCCCHHHHH-HHHHHHHHHHCCCCEEEEEEe-----------ccCHHHHHHHHHCCCEe
Confidence 334465554 466888899999999999882 44567888888889864
No 84
>3g9k_S Capsule biosynthesis protein CAPD; CAPD protein, the great lakes regional C excellence, GLRCE, capsule biogenesis/degradation; HET: GLU; 1.79A {Bacillus anthracis} PDB: 3ga9_S*
Probab=27.81 E-value=45 Score=25.19 Aligned_cols=18 Identities=22% Similarity=0.174 Sum_probs=14.6
Q ss_pred eEEEEEcCCCCEEEEEec
Q psy3230 40 TFVHVTDLSGRETIARIT 57 (151)
Q Consensus 40 TiitlTD~~G~~~~~~sS 57 (151)
|++++.|.+||.+...+|
T Consensus 2 th~svvD~~GnaVS~T~S 19 (177)
T 3g9k_S 2 THFVIIDRDGTVVSSTNT 19 (177)
T ss_dssp EEEEEECTTCCEEEEEEE
T ss_pred eEEEEECCCCCEEEEEcc
Confidence 789999999998755554
No 85
>3owc_A Probable acetyltransferase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: COA; 1.90A {Pseudomonas aeruginosa}
Probab=27.48 E-value=1.4e+02 Score=19.91 Aligned_cols=48 Identities=6% Similarity=0.047 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHH-cCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeEEEEE
Q psy3230 71 PYAAMLAAQDVAEKCKT-LGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIGRIE 130 (151)
Q Consensus 71 ~~Aa~~aa~~~~~k~~~-~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~~I~ 130 (151)
-++.. +...+.+.+.+ +|+..|.+.+. ..-..+++.+.+.|+......
T Consensus 109 Gig~~-ll~~~~~~a~~~~g~~~i~~~~~-----------~~N~~a~~~y~k~GF~~~~~~ 157 (188)
T 3owc_A 109 GLGLP-MLEALLAEAFADADIERVELNVY-----------DWNAAARHLYRRAGFREEGLR 157 (188)
T ss_dssp SCHHH-HHHHHHHHHHHSTTCCEEEEEEE-----------TTCHHHHHHHHHTTCEEEEEE
T ss_pred ChhHH-HHHHHHHHHHHhhCceEEEEEEe-----------cCCHHHHHHHHHcCCEEeeeE
Confidence 45554 44567788888 69999999983 335678898999999876554
No 86
>2zds_A Putative DNA-binding protein; TIM-barrel fold, structural genomics, NPPSFA; 2.30A {Streptomyces coelicolor}
Probab=27.13 E-value=1.4e+02 Score=23.08 Aligned_cols=46 Identities=15% Similarity=0.195 Sum_probs=30.4
Q ss_pred HHHHHHHHHcCceEEEEEEEecCCCcccCCCCC--------hHHHHHHHHhCCCeEEEEE
Q psy3230 79 QDVAEKCKTLGITALHIKLRATGGNRTKTPGPG--------AQSALRALARSNMKIGRIE 130 (151)
Q Consensus 79 ~~~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~G--------r~~~ik~L~~~gl~I~~I~ 130 (151)
+.+++.+.++|+..|++...+ ..+... .+.+.+.|...||.|.++.
T Consensus 18 ~~~l~~~~~~G~~~vEl~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~ 71 (340)
T 2zds_A 18 EEVCRLARDFGYDGLELACWG------DHFEVDKALADPSYVDSRHQLLDKYGLKCWAIS 71 (340)
T ss_dssp HHHHHHHHHHTCSEEEEESST------TTCCHHHHHHCTTHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHcCCCEEEecccc------ccCCccccccCHHHHHHHHHHHHHcCCeEEEee
Confidence 456677888999999998610 112211 2345566778999998874
No 87
>1ufh_A YYCN protein; alpha and beta, fold, acetyltransferase, structural genomics, PSI, protein structure initiative; 2.20A {Bacillus subtilis subsp} SCOP: d.108.1.1
Probab=26.93 E-value=1.2e+02 Score=20.44 Aligned_cols=46 Identities=17% Similarity=0.286 Sum_probs=33.3
Q ss_pred CHHHHHHHHHHHHHHHHHcCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeEE
Q psy3230 70 SPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIG 127 (151)
Q Consensus 70 t~~Aa~~aa~~~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~ 127 (151)
.-++.. +.+.+.+.+.++|+..|.+.+ -..-..+++.+.+.|++..
T Consensus 127 ~Gig~~-ll~~~~~~~~~~g~~~i~l~~-----------~~~N~~a~~~y~k~GF~~~ 172 (180)
T 1ufh_A 127 KGYAKQ-ALAALDQAARSMGIRKLSLHV-----------FAHNQTARKLYEQTGFQET 172 (180)
T ss_dssp SSHHHH-HHHHHHHHHHHTTCCEEEECC-----------CTTCHHHHHHHHHTTCCCC
T ss_pred CChHHH-HHHHHHHHHHHCCCCEEEEEe-----------ccCcHHHHHHHHHCCCEEe
Confidence 346554 445677888889999988887 3445678888888888654
No 88
>3h4q_A Putative acetyltransferase; NP_371943.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE P33; 2.50A {Staphylococcus aureus subsp}
Probab=26.85 E-value=67 Score=21.97 Aligned_cols=49 Identities=12% Similarity=-0.040 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHcCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeEEEEEec
Q psy3230 72 YAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIGRIEDV 132 (151)
Q Consensus 72 ~Aa~~aa~~~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~~I~D~ 132 (151)
++.+ +.+.+.+.|.+.|+..|.+.+. .....+++.+.+.|+........
T Consensus 120 ig~~-Ll~~~~~~a~~~g~~~i~l~v~-----------~~N~~a~~~y~k~GF~~~~~~~~ 168 (188)
T 3h4q_A 120 AATE-LFNYVIDVVKARGAEVILTDTF-----------ALNKPAQGLFAKFGFHKVGEQLM 168 (188)
T ss_dssp HHHH-HHHHHHHHHHHTTCCEEEEEGG-----------GSCGGGTHHHHHTTCEEC-----
T ss_pred HHHH-HHHHHHHHHHHcCCCEEEEEEe-----------cCCHHHHHHHHHCCCeEeceEEe
Confidence 5544 4466888888999999999872 33456778888899987665543
No 89
>1yvk_A Hypothetical protein BSU33890; ALPHS-beta protein, structural genomics, PSI, protein structure initiative; HET: COA; 3.01A {Bacillus subtilis subsp} SCOP: d.108.1.1
Probab=26.81 E-value=1.5e+02 Score=20.12 Aligned_cols=50 Identities=22% Similarity=0.341 Sum_probs=36.2
Q ss_pred CCHHHHHHHHHHHHHHHHHcCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeEEEEE
Q psy3230 69 ASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIGRIE 130 (151)
Q Consensus 69 ~t~~Aa~~aa~~~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~~I~ 130 (151)
+.-++.++ .+.+.+.+.+.|+..+.+.+. .....+++.+.+.|+......
T Consensus 77 g~Gig~~L-l~~~~~~~~~~g~~~i~l~~~-----------~~n~~a~~~y~k~GF~~~~~~ 126 (163)
T 1yvk_A 77 KKGFGKQL-VLDAIEKAKKLGADTIEIGTG-----------NSSIHQLSLYQKCGFRIQAID 126 (163)
T ss_dssp TSSHHHHH-HHHHHHHHHHTTCSEEEEEEE-----------TTCHHHHHHHHHTTCEEEEEE
T ss_pred CCCHHHHH-HHHHHHHHHHCCCCEEEEEcC-----------CCCHHHHHHHHHCCCEEecee
Confidence 33466554 466778888899999998872 334567888889999887654
No 90
>1rfm_A L-sulfolactate dehydrogenase; methanogens, coenzyme M, hyperthermostable, Pro-S hydrogen transfer; HET: NAD; 2.50A {Methanocaldococcus jannaschii} PDB: 2x06_A*
Probab=26.72 E-value=2.7e+02 Score=23.04 Aligned_cols=88 Identities=13% Similarity=0.103 Sum_probs=58.7
Q ss_pred cCCCCEEEEEecccc-eeeccCCCCCHHHHHHHHHHHHHHHHHcCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCC
Q psy3230 46 DLSGRETIARITGGM-KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNM 124 (151)
Q Consensus 46 D~~G~~~~~~sSgg~-g~k~~~rK~t~~Aa~~aa~~~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl 124 (151)
|++.++.+...++.+ .+-+ ..---++++..+.+.++++|++.|+-.|.|+= ++-+|..-..+.++. ..|+
T Consensus 62 ~~~a~p~v~~~~~a~~~vDg-~~g~G~~~~~~am~~aiekAk~~Gig~v~vrn-------s~H~G~~g~y~~~aa-~~Gl 132 (344)
T 1rfm_A 62 NPKPDIKIVKESPATAVIDG-DLGLGQVVGKKAMELAIKKAKNVGVGVVATRN-------ANHFGIAGYYSELAM-NQDM 132 (344)
T ss_dssp CSSCCCEEEEECSSEEEEEE-EEECHHHHHHHHHHHHHHHHHHHSEEEEEEEE-------ECCCSCTHHHHHHHH-TTTS
T ss_pred CCCCCeEEEEcCCcEEEEEC-CCCchHHHHHHHHHHHHHHHHHhCEEEEEEec-------CCCcchhHHHHHHHH-HCCC
Confidence 344444444444443 2332 22445788888999999999999999888875 377898887787655 4677
Q ss_pred eEEEEEecCC--CCCCCCCC
Q psy3230 125 KIGRIEDVTP--IPSDSTRR 142 (151)
Q Consensus 125 ~I~~I~D~Tp--iphNGCRp 142 (151)
-=+..+...| .||+|-+|
T Consensus 133 igi~~tNs~p~vaP~Gg~~~ 152 (344)
T 1rfm_A 133 IGITITNTEPAMAPFGGKEK 152 (344)
T ss_dssp EEEEEECCSSCBCCTTBCSC
T ss_pred eEEEEeCCCCeeCCCCCCCC
Confidence 6566665544 57777554
No 91
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=26.65 E-value=84 Score=22.21 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHcCceEEEEEEEec
Q psy3230 74 AMLAAQDVAEKCKTLGITALHIKLRAT 100 (151)
Q Consensus 74 a~~aa~~~~~k~~~~gi~~v~V~vr~~ 100 (151)
.++|++.+-+.|+++|+. |.|..+|.
T Consensus 21 TyMAAeaL~~aA~~~G~~-ikVEtqGs 46 (111)
T 2kyr_A 21 TFMAAQALEEAAVEAGYE-VKIETQGA 46 (111)
T ss_dssp HHHHHHHHHHHHHHTSSE-EEEEEEET
T ss_pred HHHHHHHHHHHHHHCCCe-EEEEecCC
Confidence 457888888899999998 88888764
No 92
>3ur8_A Glucan endo-1,3-beta-D-glucosidase; glucoside hydrolase, GH17 family, pathogenesis-related class protein (PR-2), TIM barrel; 1.26A {Solanum tuberosum} PDB: 3ur7_A
Probab=25.94 E-value=85 Score=26.02 Aligned_cols=34 Identities=26% Similarity=0.303 Sum_probs=24.9
Q ss_pred HHHHHHHcCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeEE
Q psy3230 81 VAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIG 127 (151)
Q Consensus 81 ~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~ 127 (151)
+++.++..|++.|+|+ +.. ..+|.+|..+|+++.
T Consensus 20 Vv~llks~gi~~VRlY----------~~D---~~vL~Al~~sgi~V~ 53 (323)
T 3ur8_A 20 VIKLYNANNIKKMRIY----------YPH---TNVFNALKGSNIEII 53 (323)
T ss_dssp HHHHHHHTTCCEEEES----------SCC---HHHHHHHTTCCCEEE
T ss_pred HHHHHHhCCCCeEEec----------CCC---HHHHHHHHhcCCeEE
Confidence 4455577899977666 223 689999999999864
No 93
>1yk3_A Hypothetical protein RV1347C/MT1389; acyltransferase, GCN5-related fold, structural genomics, PSI, protein structure initiative; HET: BOG; 2.20A {Mycobacterium tuberculosis} SCOP: d.108.1.1
Probab=25.64 E-value=1.4e+02 Score=21.61 Aligned_cols=50 Identities=6% Similarity=0.001 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHH--cCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeEEEEEec
Q psy3230 71 PYAAMLAAQDVAEKCKT--LGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIGRIEDV 132 (151)
Q Consensus 71 ~~Aa~~aa~~~~~k~~~--~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~~I~D~ 132 (151)
-|+.. +...+.+.+.+ +|+..|.+.+ ......+++.+.+.|+......+.
T Consensus 142 GiG~~-ll~~~~~~a~~~~~g~~~I~l~v-----------~~~N~~A~~lyek~GF~~~g~~~~ 193 (210)
T 1yk3_A 142 GFGPL-LLPRIVASVFANEPRCRRIMFDP-----------DHRNTATRRLCEWAGCKFLGEHDT 193 (210)
T ss_dssp THHHH-HHHHHHHHHHHHCTTCCEEEECC-----------BTTCHHHHHHHHHHTCEEEEEEEC
T ss_pred ChHHH-HHHHHHHHHHhcCCCCCEEEEec-----------CccCHHHHHHHHHcCCEEeEEEeC
Confidence 46554 44667777875 8999999887 355678899999999987766543
No 94
>1yre_A Hypothetical protein PA3270; APC5563, midwest center for structural genomics, MSC protein structure initiative, PSI, MCSG; HET: COA; 2.15A {Pseudomonas aeruginosa} SCOP: d.108.1.1
Probab=25.42 E-value=1.6e+02 Score=20.04 Aligned_cols=51 Identities=10% Similarity=0.051 Sum_probs=36.2
Q ss_pred CCCHHHHHHHHHHHHHHHHH-cCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeEEEEE
Q psy3230 68 EASPYAAMLAAQDVAEKCKT-LGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIGRIE 130 (151)
Q Consensus 68 K~t~~Aa~~aa~~~~~k~~~-~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~~I~ 130 (151)
++.-++.. +...+.+.+.+ +|+..|.+.+. ..-..+++.+.+.|+......
T Consensus 109 rg~Gig~~-ll~~~~~~a~~~~g~~~i~~~v~-----------~~N~~a~~~y~k~GF~~~g~~ 160 (197)
T 1yre_A 109 HGSGLNRM-IKYLMLKHAFDNLRMVRVQLSTA-----------ASNLRAQGAIDKLGAQREGVL 160 (197)
T ss_dssp TTTTHHHH-HHHHHHHHHHHTSCCSEEEEEEE-----------TTCHHHHHHHHHHTCEEEEEE
T ss_pred hcCCHHHH-HHHHHHHHHHhhcCccEEEEEEc-----------CCCHHHHHHHHHcCCeeeeee
Confidence 33446654 44667788877 89999999983 345678888888899765443
No 95
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=25.39 E-value=1.5e+02 Score=22.82 Aligned_cols=48 Identities=4% Similarity=0.057 Sum_probs=36.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeEE
Q psy3230 68 EASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIG 127 (151)
Q Consensus 68 K~t~~Aa~~aa~~~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~ 127 (151)
++.-++.. +.+.+.+.+.++|+..|.+.+. .....+++.+.+.|+.+.
T Consensus 245 rg~Gig~~-ll~~~~~~a~~~g~~~i~l~v~-----------~~N~~a~~~y~k~GF~~~ 292 (333)
T 4ava_A 245 QGRGIGSF-LIGALSVAARVDGVERFAARML-----------SDNVPMRTIMDRYGAVWQ 292 (333)
T ss_dssp TTSSHHHH-HHHHHHHHHHHTTCCEEEEEEE-----------TTCHHHHHHHHTTTCCCE
T ss_pred cCCCHHHH-HHHHHHHHHHHCCCcEEEEEEC-----------CCCHHHHHHHHHcCCcee
Confidence 33446554 4566788888899999999983 456788898999998765
No 96
>2bue_A AAC(6')-IB; GNAT, transferase, aminoglycoside, fluoroquinolone, acetyltransferase, antibiotic resistance; HET: COA RIO; 1.7A {Escherichia coli} PDB: 1v0c_A* 2vqy_A* 2prb_A* 2qir_A* 2pr8_A*
Probab=25.25 E-value=1.6e+02 Score=19.90 Aligned_cols=50 Identities=10% Similarity=0.121 Sum_probs=36.0
Q ss_pred CHHHHHHHHHHHHHHHHH-cCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeEEEEEe
Q psy3230 70 SPYAAMLAAQDVAEKCKT-LGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIGRIED 131 (151)
Q Consensus 70 t~~Aa~~aa~~~~~k~~~-~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~~I~D 131 (151)
--++.. +.+.+.+.+.+ +|+..|.+.+ -..-..+++.+.+.|+.......
T Consensus 129 ~Gig~~-ll~~~~~~a~~~~g~~~i~~~v-----------~~~N~~a~~~y~k~GF~~~~~~~ 179 (202)
T 2bue_A 129 KGLGTK-LVRALVELLFNDPEVTKIQTDP-----------SPSNLRAIRCYEKAGFERQGTVT 179 (202)
T ss_dssp SSHHHH-HHHHHHHHHHTSTTCCEEEECC-----------CTTCHHHHHHHHHTTCEEEEEEE
T ss_pred CChHHH-HHHHHHHHHHhCCCCcEEEeCc-----------ccCCHHHHHHHHHcCCEEeeeec
Confidence 346554 44667778877 6999998887 34566788989999998766554
No 97
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=25.20 E-value=83 Score=22.01 Aligned_cols=26 Identities=19% Similarity=0.386 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHcCceEEEEEEEec
Q psy3230 74 AMLAAQDVAEKCKTLGITALHIKLRAT 100 (151)
Q Consensus 74 a~~aa~~~~~k~~~~gi~~v~V~vr~~ 100 (151)
.++|++.+-+.++++|+. +.|..+|.
T Consensus 18 TymAAeaLekaA~~~G~~-ikVEtqgs 43 (106)
T 2m1z_A 18 TYMAAQALKKGAKKMGNL-IKVETQGA 43 (106)
T ss_dssp HHHHHHHHHHHHHHHTCE-EEEEEEET
T ss_pred HHHHHHHHHHHHHHCCCE-EEEEEecC
Confidence 456778888888999996 89999764
No 98
>3ktc_A Xylose isomerase; putative sugar isomerase, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.54A {Pectobacterium atrosepticum SCRI1043}
Probab=24.98 E-value=1.4e+02 Score=23.38 Aligned_cols=46 Identities=20% Similarity=0.210 Sum_probs=32.4
Q ss_pred HHHHHHHHHc-CceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeEEEEEe
Q psy3230 79 QDVAEKCKTL-GITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIGRIED 131 (151)
Q Consensus 79 ~~~~~k~~~~-gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~~I~D 131 (151)
+..++.+.++ |+..|++.+. -......+.+-+.+...|++|..+.=
T Consensus 36 ~e~l~~aa~~~G~~~VEl~~~-------~~~~~~~~~l~~~l~~~Gl~i~~~~~ 82 (333)
T 3ktc_A 36 IDQINAAKEVGELSYVDLPYP-------FTPGVTLSEVKDALKDAGLKAIGITP 82 (333)
T ss_dssp HHHHHHHHHHSSEEEEEEEES-------CSTTCCHHHHHHHHHHHTCEEEEEEE
T ss_pred HHHHHHHHHhCCCCEEEecCC-------CcchhHHHHHHHHHHHcCCeEEEEec
Confidence 4566788889 9999999872 11133455566667788999988763
No 99
>1s7k_A Acetyl transferase; GNAT; 1.80A {Salmonella typhimurium} SCOP: d.108.1.1 PDB: 1s7l_A* 1s7n_A* 1s7f_A 1z9u_A
Probab=24.96 E-value=1.5e+02 Score=19.51 Aligned_cols=52 Identities=13% Similarity=0.105 Sum_probs=36.8
Q ss_pred CCCHHHHHHHHHHHHHHHHH-cCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeEEEEEe
Q psy3230 68 EASPYAAMLAAQDVAEKCKT-LGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIGRIED 131 (151)
Q Consensus 68 K~t~~Aa~~aa~~~~~k~~~-~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~~I~D 131 (151)
++.-++.. +.+.+.+.+.+ +|+..|.+.+. ..-..+++.+.+.|+.......
T Consensus 108 rg~Gig~~-ll~~~~~~a~~~~~~~~i~~~~~-----------~~N~~a~~~y~k~Gf~~~~~~~ 160 (182)
T 1s7k_A 108 QGQGIMSQ-SLQALMTHYARRGDIRRFVIKCR-----------VDNQASNAVARRNHFTLEGCMK 160 (182)
T ss_dssp CSSSHHHH-HHHHHHHHHHHHCSCCEEEEEEE-----------TTCHHHHHHHHHTTCEEEEEEE
T ss_pred cCCCHHHH-HHHHHHHHHHhhCCccEEEEEec-----------CCCHHHHHHHHHCCCEEEeeee
Confidence 33456655 44557777776 89999999983 4456788888999998765543
No 100
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=24.91 E-value=1.4e+02 Score=19.06 Aligned_cols=52 Identities=15% Similarity=0.112 Sum_probs=32.8
Q ss_pred CHHHHHHHHHHHHHHHHH-----cCceEEEEEEEecCCCcccCC----CC--ChHHHHHHHHhCCCeEEE
Q psy3230 70 SPYAAMLAAQDVAEKCKT-----LGITALHIKLRATGGNRTKTP----GP--GAQSALRALARSNMKIGR 128 (151)
Q Consensus 70 t~~Aa~~aa~~~~~k~~~-----~gi~~v~V~vr~~~g~~~kG~----G~--Gr~~~ik~L~~~gl~I~~ 128 (151)
|..-|..+.+.+++.+.+ .|+..|.|.- | +|. |. =|.++.+.|.+.++.+.+
T Consensus 9 ~v~eA~~~l~~~l~~~~~~~~~~~g~~~v~II~-G------kG~hS~~g~~~Lk~~V~~~L~~~~~~~~e 71 (82)
T 3fau_A 9 HVDEALEHLMRVLEKKTEEFKQNGGKPYLSVIT-G------RGNHSQGGVARIKPAVIKYLISHSFRFSE 71 (82)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEC-C------C---------CHHHHHHHHHHHTTCCEEE
T ss_pred cHHHHHHHHHHHHHHHHHHhhccCCceEEEEEE-C------CCCCCCCCcchHHHHHHHHHHhCCCceee
Confidence 344555666667777766 8999998885 2 222 22 355677778888877643
No 101
>2g0w_A LMO2234 protein; putative sugar isomerase, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE PG4; 1.70A {Listeria monocytogenes} SCOP: c.1.15.4
Probab=24.56 E-value=1.3e+02 Score=23.02 Aligned_cols=50 Identities=18% Similarity=0.272 Sum_probs=32.1
Q ss_pred HHHHHHHHHcCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeEEEEE
Q psy3230 79 QDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIGRIE 130 (151)
Q Consensus 79 ~~~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~~I~ 130 (151)
+.+++.+.++|+..|++...... .+ ...+...+.+-+.|...||.|.++.
T Consensus 39 ~~~l~~a~~~G~~~vEl~~~~~~-~~-~~~~~~~~~~~~~l~~~gl~i~~~~ 88 (296)
T 2g0w_A 39 PKRVKVAAENGFDGIGLRAENYV-DA-LAAGLTDEDMLRILDEHNMKVTEVE 88 (296)
T ss_dssp HHHHHHHHHTTCSEEEEEHHHHH-HH-HHTTCCHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHcCCCEEEeCHHHHH-HH-HhcCCcHHHHHHHHHHcCCceEeeh
Confidence 44567788899999999862000 00 0012344556677788999999886
No 102
>2fsr_A Acetyltransferase; alpha-beta-sandwich, structural genomics, PSI, protein struc initiative, midwest center for structural genomics; HET: PEG; 1.52A {Agrobacterium tumefaciens str} SCOP: d.108.1.1
Probab=24.26 E-value=1.8e+02 Score=20.22 Aligned_cols=49 Identities=20% Similarity=0.203 Sum_probs=35.1
Q ss_pred CCCHHHHHHHHHHHHHHHHH-cCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeEEE
Q psy3230 68 EASPYAAMLAAQDVAEKCKT-LGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIGR 128 (151)
Q Consensus 68 K~t~~Aa~~aa~~~~~k~~~-~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~~ 128 (151)
++.-++.. +...+.+.+.+ +|+..|.+.+ -..-..+++.+.+.|+....
T Consensus 124 rg~Gig~~-ll~~~~~~a~~~~g~~~i~l~v-----------~~~N~~a~~~y~k~GF~~~g 173 (195)
T 2fsr_A 124 EGRGYAAE-AAVALRDWAFETLNLPTLVSYV-----------SPQNRKSAAVAERIGGTLDP 173 (195)
T ss_dssp TTSSHHHH-HHHHHHHHHHHHSCCSCEEEEE-----------CTTCHHHHHHHHHTTCEECT
T ss_pred cCCChHHH-HHHHHHHHHHhhCCccEEEEEE-----------CCCCHHHHHHHHHCCCEEEe
Confidence 33456654 44567777877 7999999998 34456788988999987543
No 103
>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A
Probab=24.21 E-value=64 Score=28.02 Aligned_cols=63 Identities=21% Similarity=0.295 Sum_probs=40.3
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHcCceEEEEEEEecCCCcccCCCC-ChHHHHHHHHhCCCeEEEEEecCCCCC
Q psy3230 65 DRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGP-GAQSALRALARSNMKIGRIEDVTPIPS 137 (151)
Q Consensus 65 ~~rK~t~~Aa~~aa~~~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~-Gr~~~ik~L~~~gl~I~~I~D~Tpiph 137 (151)
++...|-|....+++.+++.. ...++...|.| .|+|- |..+ .+.|.+.|.+|+.|.|..-.-+
T Consensus 209 ~r~~aTg~Gv~~~~~~~~~~~-g~~l~g~~vaV--------qGfGnVG~~~-a~~L~e~GakvVavsD~~G~i~ 272 (440)
T 3aog_A 209 GRRDATGRGVFITAAAAAEKI-GLQVEGARVAI--------QGFGNVGNAA-ARAFHDHGARVVAVQDHTGTVY 272 (440)
T ss_dssp TCTTHHHHHHHHHHHHHHHHH-TCCSTTCEEEE--------ECCSHHHHHH-HHHHHHTTCEEEEEECSSCEEE
T ss_pred CCCcchHHHHHHHHHHHHHhc-CCCccCCEEEE--------eccCHHHHHH-HHHHHHCCCEEEEEEcCCcEEE
Confidence 343556666665656555442 23444567777 47775 5544 4778888999999999864433
No 104
>3uoe_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.31A {Sinorhizobium meliloti}
Probab=24.12 E-value=3.2e+02 Score=22.87 Aligned_cols=88 Identities=16% Similarity=0.053 Sum_probs=58.6
Q ss_pred cCCCCEEEEEecccc-eeeccCCCCCHHHHHHHHHHHHHHHHHcCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCC
Q psy3230 46 DLSGRETIARITGGM-KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNM 124 (151)
Q Consensus 46 D~~G~~~~~~sSgg~-g~k~~~rK~t~~Aa~~aa~~~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl 124 (151)
|++.++.+...++.+ .+-+ ..---++++..+.+.++++|++.|+-.|.|+= ++-+|..-..+.++.. .|+
T Consensus 85 ~~~a~p~v~~~~~a~~~vDg-~~g~G~~~~~~Am~~aiekAk~~Gig~v~vrn-------S~H~G~~g~y~~~aa~-~Gl 155 (357)
T 3uoe_A 85 NPTTRGNGTWRRASFLSVDG-ERGLGPVVMMDAMRVTRRILKETGLAIAAIRN-------ANHMGMLAYYAEAAAR-DGL 155 (357)
T ss_dssp BSSCCCEEEEEETTEEEEEE-EEECHHHHHHHHHHHHHHHHHHHSEEEEEEEE-------ECCCCCTHHHHHHHHH-TTC
T ss_pred CCCCCcEEEEecCcEEEEEC-CCCchHHHHHHHHHHHHHHHHHhCEEEEEEec-------CCCccchHHHHHHHHH-CCC
Confidence 344444444444443 2332 22446788889999999999999999888875 3778988888877664 677
Q ss_pred eEEEEEecCC--CCCCCCCC
Q psy3230 125 KIGRIEDVTP--IPSDSTRR 142 (151)
Q Consensus 125 ~I~~I~D~Tp--iphNGCRp 142 (151)
-=+..+...| .|++|-+|
T Consensus 156 igi~~tns~p~vaP~GG~~~ 175 (357)
T 3uoe_A 156 IGIVMSTSEALVHPFGGTQA 175 (357)
T ss_dssp EEEEEECCSSCBCCTTBCSC
T ss_pred EEEEEcCCCCeeCCCCCCCC
Confidence 6555555433 47777554
No 105
>1v9n_A Malate dehydrogenase; riken structural genomics/proteomics initiati structural genomics, oxidoreductase; HET: NDP; 2.10A {Pyrococcus horikoshii}
Probab=23.93 E-value=3.2e+02 Score=22.80 Aligned_cols=88 Identities=15% Similarity=0.123 Sum_probs=60.2
Q ss_pred cCCCCEEEEEecccc-eeeccCCCCCHHHHHHHHHHHHHHHHHcCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCC
Q psy3230 46 DLSGRETIARITGGM-KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNM 124 (151)
Q Consensus 46 D~~G~~~~~~sSgg~-g~k~~~rK~t~~Aa~~aa~~~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl 124 (151)
|++.++.+...++.+ .+-+ ..---++++..+.+.++++|++.|+-.|.|+= ++-+|..-..+.++. ..|+
T Consensus 73 ~~~a~p~v~~~~~a~~~vDg-~~g~G~~~~~~am~~aiekAk~~Gi~~v~vrn-------s~H~G~~g~y~~~aa-~~Gl 143 (360)
T 1v9n_A 73 NLHPKIRVIREGPSYALIDG-DEGLGQVVGYRSMKLAIKKAKDTGIGIVIARN-------SNHYGIAGYYALMAA-EEGM 143 (360)
T ss_dssp BSSCCCEEEEEETTEEEEEC-TTBCHHHHHHHHHHHHHHHHHHHSEEEEEEEE-------ECCCSCTHHHHHHHH-TTTS
T ss_pred CCCCCeEEEEeCCcEEEEEC-CCCcHHHHHHHHHHHHHHHHHHcCEEEEEEeC-------CCCcchHHHHHHHHH-HCCC
Confidence 445555444555554 3333 33556788899999999999999999888875 378898888887755 4677
Q ss_pred eEEEEEecC--CCCCCCCCC
Q psy3230 125 KIGRIEDVT--PIPSDSTRR 142 (151)
Q Consensus 125 ~I~~I~D~T--piphNGCRp 142 (151)
--+..+... -.|++|-+|
T Consensus 144 igi~~tNs~p~vaP~Gg~~~ 163 (360)
T 1v9n_A 144 IGISMTNSRPLVAPTGGIER 163 (360)
T ss_dssp EEEEEECCSSCBCCTTCCSC
T ss_pred eEEEEeCCCCeeCCCCCCCC
Confidence 655555543 357777554
No 106
>3l23_A Sugar phosphate isomerase/epimerase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=23.84 E-value=1e+02 Score=23.96 Aligned_cols=48 Identities=17% Similarity=0.151 Sum_probs=32.5
Q ss_pred HHHHHHHHHcCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeEEEEE
Q psy3230 79 QDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIGRIE 130 (151)
Q Consensus 79 ~~~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~~I~ 130 (151)
+..++.+.++|+..|++..... + .-.+.-.+.+-+.|...||++.++.
T Consensus 32 ~~~l~~~a~~G~~~VEl~~~~~-~---~~~~~~~~~~~~~l~~~GL~v~~~~ 79 (303)
T 3l23_A 32 AANLRKVKDMGYSKLELAGYGK-G---AIGGVPMMDFKKMAEDAGLKIISSH 79 (303)
T ss_dssp HHHHHHHHHTTCCEEEECCEET-T---EETTEEHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHcCCCEEEeccccC-c---ccCCCCHHHHHHHHHHcCCeEEEEe
Confidence 4567788899999999975210 0 0122234556677788999999885
No 107
>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A
Probab=23.67 E-value=58 Score=28.17 Aligned_cols=60 Identities=17% Similarity=0.252 Sum_probs=38.9
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHcCceEEEEEEEecCCCcccCCCC-ChHHHHHHHHhCCCeEEEEEecCC
Q psy3230 65 DRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGP-GAQSALRALARSNMKIGRIEDVTP 134 (151)
Q Consensus 65 ~~rK~t~~Aa~~aa~~~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~-Gr~~~ik~L~~~gl~I~~I~D~Tp 134 (151)
++-..|-|....+++.+++.. ...++...|.| .|+|. |..++ +.|...|.+|+.|.|..-
T Consensus 195 ~r~~aTg~Gv~~~~~~~~~~~-g~~l~g~~vaV--------qG~GnVG~~aa-~~l~e~GakVVavsD~~G 255 (424)
T 3k92_A 195 GRETATAQGVTICIEEAVKKK-GIKLQNARIII--------QGFGNAGSFLA-KFMHDAGAKVIGISDANG 255 (424)
T ss_dssp TTTTHHHHHHHHHHHHHHHHT-TCCGGGCEEEE--------ECCSHHHHHHH-HHHHHHTCEEEEEECSSC
T ss_pred CCcccHHHHHHHHHHHHHHHc-CCCcccCEEEE--------ECCCHHHHHHH-HHHHHCCCEEEEEECCCC
Confidence 344556666655555555432 33455667888 47775 55554 557778999999999874
No 108
>1ghe_A Acetyltransferase; acyl coenzyme A complex; HET: ACO; 1.55A {Pseudomonas syringae PV} SCOP: d.108.1.1 PDB: 1j4j_A*
Probab=23.48 E-value=1.6e+02 Score=19.22 Aligned_cols=50 Identities=10% Similarity=-0.029 Sum_probs=35.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeEEEEE
Q psy3230 68 EASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIGRIE 130 (151)
Q Consensus 68 K~t~~Aa~~aa~~~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~~I~ 130 (151)
++.-++.. +.+.+.+.+.+.|+..|.+.+. - + + . +++.+.+.|+......
T Consensus 103 rg~Gig~~-ll~~~~~~~~~~g~~~i~l~~~--------~-~-n-~-a~~~y~k~Gf~~~~~~ 152 (177)
T 1ghe_A 103 RGRGLGRQ-LMDEVEQVAVKHKRGLLHLDTE--------A-G-S-V-AEAFYSALAYTRVGEL 152 (177)
T ss_dssp TTSSHHHH-HHHHHHHHHHHTTCCEEEEEEE--------T-T-S-H-HHHHHHHTTCEEEEEE
T ss_pred cCCCHHHH-HHHHHHHHHHHcCCCEEEEEec--------c-C-C-H-HHHHHHHcCCEEcccc
Confidence 33446654 4466778888899999999983 1 1 2 3 7888889999876553
No 109
>1nsl_A Probable acetyltransferase; structural genomics, hexamer, alpha-beta, PSI, protein struc initiative, midwest center for structural genomics; 2.70A {Bacillus subtilis} SCOP: d.108.1.1
Probab=23.45 E-value=1.7e+02 Score=19.41 Aligned_cols=51 Identities=12% Similarity=0.076 Sum_probs=35.4
Q ss_pred CCCHHHHHHHHHHHHHHH-HHcCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeEEEEE
Q psy3230 68 EASPYAAMLAAQDVAEKC-KTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIGRIE 130 (151)
Q Consensus 68 K~t~~Aa~~aa~~~~~k~-~~~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~~I~ 130 (151)
++.-++.. +...+.+.+ .++|+..|.+.+. ..-..+++.+.+.|+......
T Consensus 106 rg~Gig~~-ll~~~~~~a~~~~g~~~i~~~~~-----------~~N~~a~~~y~k~Gf~~~~~~ 157 (184)
T 1nsl_A 106 EGKGIITA-ACRKLITYAFEELELNRVAICAA-----------VGNEKSRAVPERIGFLEEGKA 157 (184)
T ss_dssp TTSSHHHH-HHHHHHHHHHHTSCCSEEEEEEE-----------TTCHHHHHHHHHHTCEEEEEE
T ss_pred cCCCHHHH-HHHHHHHHHHHhcCcEEEEEEEe-----------cCCHHHHHHHHHcCCEEEEEe
Confidence 33446554 445577777 4689999999983 445678888888899765543
No 110
>1y9k_A IAA acetyltransferase; structural genomics, midwest center for structural genomics bacillus cereus ATCC 14579, PSI; 2.39A {Bacillus cereus atcc 14579} SCOP: d.108.1.1
Probab=23.31 E-value=1.6e+02 Score=19.30 Aligned_cols=50 Identities=16% Similarity=0.190 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHHHHHHHHcCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeEEEEEe
Q psy3230 70 SPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIGRIED 131 (151)
Q Consensus 70 t~~Aa~~aa~~~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~~I~D 131 (151)
.-++.. +.+.+.+.+.+.|+..|.+.+. .....+++.+.+.|+.......
T Consensus 76 ~Gig~~-ll~~~~~~~~~~g~~~i~~~~~-----------~~n~~a~~~y~k~Gf~~~~~~~ 125 (157)
T 1y9k_A 76 KGIGKK-LLRHAVETAKGYGMSKLEVGTG-----------NSSVSQLALYQKCGFRIFSIDF 125 (157)
T ss_dssp SSHHHH-HHHHHHHHHHHTTCSEEEEEEE-----------TTCHHHHHHHHHTTCEEEEEET
T ss_pred CCHHHH-HHHHHHHHHHHCCCCEEEEEeC-----------CCCHHHHHHHHHCCCEEecccc
Confidence 346554 4466778888899999998873 3345678888899998876543
No 111
>1wtj_A Ureidoglycolate dehydrogenase; NADPH dependent enzyme, oxidoreductase; 1.55A {Pseudomonas syringae PV} PDB: 2cwf_A* 2cwh_A*
Probab=23.02 E-value=3.2e+02 Score=22.58 Aligned_cols=88 Identities=11% Similarity=0.094 Sum_probs=59.7
Q ss_pred cCCCCEEEEEecccc-eeeccCCCCCHHHHHHHHHHHHHHHHHcCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCC
Q psy3230 46 DLSGRETIARITGGM-KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNM 124 (151)
Q Consensus 46 D~~G~~~~~~sSgg~-g~k~~~rK~t~~Aa~~aa~~~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl 124 (151)
|++.++.+...++.+ .+-+ ..---++++..+.+.++++|++.|+-.|.|+= ++-+|..-..+.++.. .|+
T Consensus 72 ~~~a~p~v~~~~~a~~~vDg-~~g~G~~~~~~am~~aiekAk~~Gi~~v~vrn-------s~H~G~~g~y~~~aa~-~Gl 142 (343)
T 1wtj_A 72 DGKAVPVVEDVGAAFVRVDA-CNGFAQPALAAARSLLIDKARSAGVAILAIRG-------SHHFAALWPDVEPFAE-QGL 142 (343)
T ss_dssp CTTCCCEEEEEETTEEEEEC-TTSBHHHHHHHHHHHHHHHHHHHSEEEEEEEE-------EECCSCSHHHHHHHHH-TTC
T ss_pred CCCCCeEEEEcCCcEEEEEC-CCCcHHHHHHHHHHHHHHHHHHcCEEEEEEeC-------CCCCCchHHHHHHHHH-CCC
Confidence 455555444555554 3443 33556788899999999999999999888875 2678988888877654 677
Q ss_pred eEEEEEec--CCCCCCCCCC
Q psy3230 125 KIGRIEDV--TPIPSDSTRR 142 (151)
Q Consensus 125 ~I~~I~D~--TpiphNGCRp 142 (151)
-=+..+.. .-.|++|-+|
T Consensus 143 igi~~tNs~~~vaP~Gg~~~ 162 (343)
T 1wtj_A 143 VALSMVNSMTCVVPHGARQP 162 (343)
T ss_dssp EEEEECCCCSCBCCTTCSSC
T ss_pred eEEEEeCCCCeeCCCCCCCC
Confidence 55555444 3357777554
No 112
>3juw_A Probable GNAT-family acetyltransferase; structural genomics, APC60242, acetyltransferas protein structure initiative; HET: MSE; 2.11A {Bordetella pertussis}
Probab=22.80 E-value=1.7e+02 Score=19.30 Aligned_cols=53 Identities=15% Similarity=0.041 Sum_probs=37.8
Q ss_pred CCCHHHHHHHHHHHHHHHHH-cCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeEEEEEec
Q psy3230 68 EASPYAAMLAAQDVAEKCKT-LGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIGRIEDV 132 (151)
Q Consensus 68 K~t~~Aa~~aa~~~~~k~~~-~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~~I~D~ 132 (151)
++.-++.. +...+.+.+.+ +|+..|.+.+. ..-..+++.+.+.|+......+.
T Consensus 110 rg~Gig~~-ll~~~~~~a~~~~g~~~i~l~v~-----------~~N~~a~~~y~k~GF~~~~~~~~ 163 (175)
T 3juw_A 110 QGRGLAAE-AMQALLAHHDRSSGRQRVVALIA-----------RSNLPSLRLAERLGFRGYSDVAF 163 (175)
T ss_dssp TTSSHHHH-HHHHHHHHHHHHHTSCCEEEEEE-----------TTCHHHHHHHHHTTCEEEEEEEE
T ss_pred hCCCHHHH-HHHHHHHHHHhCCCCceEEEEEC-----------CCChhHHHHHHHcCCeEecceee
Confidence 33456654 44557777776 59999999983 44568889999999988766554
No 113
>1auu_A SACY; antitermination, RNA binding domain, transcription regulation; NMR {Bacillus subtilis} SCOP: b.35.2.1
Probab=22.67 E-value=82 Score=19.52 Aligned_cols=30 Identities=23% Similarity=0.334 Sum_probs=18.7
Q ss_pred EEccCCCeEEEEEcCCCCEEEEEecccceeec
Q psy3230 33 IFASFNDTFVHVTDLSGRETIARITGGMKVKA 64 (151)
Q Consensus 33 I~~t~NNTiitlTD~~G~~~~~~sSgg~g~k~ 64 (151)
|.-.+||-.+.+.| +|+.++ ...-|+||.+
T Consensus 3 I~KvlNNNvvl~~d-~~~E~I-v~GkGIGF~k 32 (55)
T 1auu_A 3 IKRILNHNAIVVKD-QNEEKI-LLGAGIAFNK 32 (55)
T ss_dssp ESCCCSSSEEEEEC-SSSEEE-EECTTSSTTC
T ss_pred EEEEecCcEEEEec-CCcEEE-EEeccceeCC
Confidence 44455655555677 888743 4455788865
No 114
>1qsm_A HPA2 histone acetyltransferase; protein-acetyl coenzyme A complex; HET: ACO; 2.40A {Saccharomyces cerevisiae} SCOP: d.108.1.1 PDB: 1qso_A
Probab=22.54 E-value=95 Score=19.80 Aligned_cols=44 Identities=14% Similarity=0.049 Sum_probs=31.2
Q ss_pred CHHHHHHHHHHHHHHHHHcCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCe
Q psy3230 70 SPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMK 125 (151)
Q Consensus 70 t~~Aa~~aa~~~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~ 125 (151)
.-++.. +.+.+.+.+.+.|+..+.+.+. .....+++.+.+.|++
T Consensus 98 ~Gig~~-ll~~~~~~~~~~g~~~i~l~~~-----------~~n~~a~~~y~k~Gf~ 141 (152)
T 1qsm_A 98 KGAGGK-LIQFVYDEADKLGTPSVYWCTD-----------ESNHRAQLLYVKVGYK 141 (152)
T ss_dssp SSHHHH-HHHHHHHHHHHTTCCCEEEEEE-----------TTCHHHHHHHHHHEEE
T ss_pred CCHHHH-HHHHHHHHHHHcCCCeEEEEee-----------CCCHHHHHHHHHcCCC
Confidence 346554 4466778888899999999882 3445677777777765
No 115
>1nxu_A Hypothetical oxidoreductase YIAK; hypothetical protein, structural genomics, PSI, protein structure initiative; 1.80A {Escherichia coli} SCOP: c.122.1.1 PDB: 1s20_A*
Probab=22.34 E-value=3.3e+02 Score=22.41 Aligned_cols=88 Identities=10% Similarity=-0.008 Sum_probs=60.1
Q ss_pred cCCCCEEEEEecccc-eeeccCCCCCHHHHHHHHHHHHHHHHHcCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCC
Q psy3230 46 DLSGRETIARITGGM-KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNM 124 (151)
Q Consensus 46 D~~G~~~~~~sSgg~-g~k~~~rK~t~~Aa~~aa~~~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl 124 (151)
|++.++.+...++.+ .+-+ ..---++++..+.+.++++|++.|+-.|.|+= ++-+|..-..+.++.. .|+
T Consensus 62 ~~~a~p~v~~~~~a~~~vDg-~~g~G~~~~~~am~~aiekAk~~Gi~~v~vrn-------s~H~G~~g~y~~~aa~-~Gl 132 (333)
T 1nxu_A 62 IPDAQPKRITSLGAIEQWDA-QRSIGNLTAKKMMDRAIELAADHGIGLVALRN-------ANHWMRGGSYGWQAAE-KGY 132 (333)
T ss_dssp CTTCCCEEEEEETTEEEEEC-TTCCHHHHHHHHHHHHHHHHHHHSEEEEEEEE-------ECCCSCTHHHHHHHHH-TTC
T ss_pred CCCCCcEEEEcCCcEEEEEC-CCCcHHHHHHHHHHHHHHHHHHcCEEEEEEeC-------CCCCCccHHHHHHHHH-CCC
Confidence 455555444555554 3443 33556788899999999999999999888875 2678887777777554 677
Q ss_pred eEEEEEecCC--CCCCCCCC
Q psy3230 125 KIGRIEDVTP--IPSDSTRR 142 (151)
Q Consensus 125 ~I~~I~D~Tp--iphNGCRp 142 (151)
--+..+...| .|++|-+|
T Consensus 133 igi~~tns~~~vaP~Gg~~~ 152 (333)
T 1nxu_A 133 IGICWTNSIAVMPPWGAKEC 152 (333)
T ss_dssp EEEEEECCSSCBCCTTBSSC
T ss_pred EEEEEeCCCCeeCCCCCCCC
Confidence 5555555433 57777554
No 116
>4a4y_A Protein MXIG; protein binding, FHA domain; 1.57A {Shigella flexneri} PDB: 2xxs_A
Probab=22.15 E-value=96 Score=22.35 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=19.4
Q ss_pred eeEEEEEccCCCeEEEEEcCCCCEE
Q psy3230 28 FGVAHIFASFNDTFVHVTDLSGRET 52 (151)
Q Consensus 28 ~gi~hI~~t~NNTiitlTD~~G~~~ 52 (151)
.||+|+..+..|+ +.+.|.+|..+
T Consensus 84 dgiiyltiskdni-cqfsdekgeqi 107 (146)
T 4a4y_A 84 DGIIYLTISKDNI-CQFSDEKGEQI 107 (146)
T ss_dssp CEEEEEEECTTCC-EEEECTTSCEE
T ss_pred CcEEEEEEecCcc-eecccccCcEe
Confidence 5899988888664 89999999764
No 117
>3fbu_A Acetyltransferase, GNAT family; structur genomics, PSI2, MCSG, protein structure initiative, midwest for structural genomics; HET: COA; 1.80A {Bacillus anthracis str}
Probab=22.10 E-value=1.7e+02 Score=19.11 Aligned_cols=50 Identities=16% Similarity=0.159 Sum_probs=35.6
Q ss_pred CCCHHHHHHHHHHHHHHHHH-cCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeEEEE
Q psy3230 68 EASPYAAMLAAQDVAEKCKT-LGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIGRI 129 (151)
Q Consensus 68 K~t~~Aa~~aa~~~~~k~~~-~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~~I 129 (151)
++.-++.. +...+.+.+.+ +|+..|.+.+ ...-..+++.+.+.|+.....
T Consensus 95 rg~Gig~~-ll~~~~~~a~~~~~~~~i~l~v-----------~~~N~~a~~~y~k~GF~~~g~ 145 (168)
T 3fbu_A 95 FNKGYASE-AAQATLKYGFKEMKLHRIIATC-----------QPENTPSYRVMEKIGMRREGY 145 (168)
T ss_dssp TTSSHHHH-HHHHHHHHHHHTSCCSEEEEEE-----------CTTCHHHHHHHHHTTCEEEEE
T ss_pred hcCCHHHH-HHHHHHHHHHhhCCceEEEEEe-----------ccCChHHHHHHHHCCCeEEEE
Confidence 33446554 44567777766 5999999998 345668889999999976554
No 118
>1z2i_A Malate dehydrogenase; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; HET: NAD; 2.20A {Agrobacterium tumefaciens}
Probab=21.92 E-value=3.5e+02 Score=22.53 Aligned_cols=88 Identities=17% Similarity=0.140 Sum_probs=59.2
Q ss_pred cCCCCEEEEEecccce-eeccCCCCCHHHHHHHHHHHHHHHHHcCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCC
Q psy3230 46 DLSGRETIARITGGMK-VKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNM 124 (151)
Q Consensus 46 D~~G~~~~~~sSgg~g-~k~~~rK~t~~Aa~~aa~~~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl 124 (151)
|++.++.+...++.+. +-+ ..---++++..+.+.++++|++.|+-.|.|+= ++-+|..-..+.++.. .|+
T Consensus 71 ~~~a~p~v~~~~~a~~~vDg-~~g~G~~~~~~am~~aiekAk~~Gi~~v~vrn-------s~H~G~~g~y~~~aa~-~Gl 141 (358)
T 1z2i_A 71 NRRPQISRVSGFGAVETIDA-DHAHGARATYAAMENAMALAEKFGIGAVAIRN-------SSHFGPAGAYALEAAR-QGY 141 (358)
T ss_dssp CSSCCCEEEECCTTEEEEEC-SSCCHHHHHHHHHHHHHHHHHHHSEEEEEEEE-------ECCCSCTHHHHHHHHH-TTS
T ss_pred CCCCCeEEEEcCCcEEEEEC-CCCcHHHHHHHHHHHHHHHHHHcCEEEEEEeC-------CCCcchHHHHHHHHHH-CCC
Confidence 3444444444444443 333 33556788888999999999999999888875 3788988888877654 677
Q ss_pred eEEEEEecC--CCCCCCCCC
Q psy3230 125 KIGRIEDVT--PIPSDSTRR 142 (151)
Q Consensus 125 ~I~~I~D~T--piphNGCRp 142 (151)
--+..+... -.|++|-+|
T Consensus 142 igi~~tNs~~~vaP~Gg~~~ 161 (358)
T 1z2i_A 142 IGLAFCNSDSFVRLHDGAMR 161 (358)
T ss_dssp EEEEEECCSCCBCCTTBSSC
T ss_pred eEEEEeCCCCeeCCCCCCCC
Confidence 655665543 357777554
No 119
>2cyg_A Beta-1, 3-glucananse; endo-beta-1,3-glucanase, (beta-alpha)8-TIM-barrel, B-cell epitopes, allergen, banana, hydrolase; 1.45A {Musa acuminata} SCOP: c.1.8.3
Probab=21.73 E-value=1.2e+02 Score=24.79 Aligned_cols=33 Identities=30% Similarity=0.429 Sum_probs=25.3
Q ss_pred HHHHHHcCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeEE
Q psy3230 82 AEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIG 127 (151)
Q Consensus 82 ~~k~~~~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~ 127 (151)
++.++.+|++.|+++ +.. ..+|++|..+|+++.
T Consensus 19 v~llk~~~i~~vRlY----------~~d---~~vl~A~~~tgi~v~ 51 (312)
T 2cyg_A 19 VSLYKSNNIARMRLY----------DPN---QAALQALRNSNIQVL 51 (312)
T ss_dssp HHHHHHTTCCEEEES----------SCC---HHHHHHHTTSCCEEE
T ss_pred HHHHHhcCCCEEEEc----------CCC---HHHHHHHHhcCCEEE
Confidence 566678899988886 222 688999999998874
No 120
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A*
Probab=21.65 E-value=1.1e+02 Score=25.45 Aligned_cols=51 Identities=20% Similarity=0.207 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHcCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeEEEEEecC
Q psy3230 76 LAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIGRIEDVT 133 (151)
Q Consensus 76 ~aa~~~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~~I~D~T 133 (151)
.++..++..|.+.|.. ++|++-- .+-...||.++ +.|.+.|+.+..|.|..
T Consensus 152 ~tvl~~l~~A~~~gk~-~~V~v~E-----tRP~~qGrltA-~eL~~~GI~vtlI~Dsa 202 (338)
T 3a11_A 152 KAAISVMKTAWEQGKD-IKVIVTE-----TRPKWQGKITA-KELASYGIPVIYVVDSA 202 (338)
T ss_dssp HHHHHHHHHHHHTTCC-CEEEEEC-----CTTTTHHHHHH-HHHHHTTCCEEEECGGG
T ss_pred HHHHHHHHHHHHCCCe-EEEEEeC-----CCCchhhHHHH-HHHHhCCCCEEEEehHH
Confidence 3556677778777754 6666632 24556687777 66889999999999964
No 121
>2fck_A Ribosomal-protein-serine acetyltransferase, putat; ribosomal-protein structural genomics, PSI, protein structure initiative; HET: MSE; 1.70A {Vibrio cholerae o1 biovar eltor} SCOP: d.108.1.1
Probab=21.62 E-value=1.8e+02 Score=19.16 Aligned_cols=47 Identities=19% Similarity=0.204 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHH-cCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeEEEE
Q psy3230 71 PYAAMLAAQDVAEKCKT-LGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIGRI 129 (151)
Q Consensus 71 ~~Aa~~aa~~~~~k~~~-~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~~I 129 (151)
-++.. +...+.+.+.+ +|+..|.+.+ -..-..+++.+.+.|+.....
T Consensus 113 Gig~~-ll~~~~~~a~~~~g~~~i~~~~-----------~~~N~~a~~~y~k~GF~~~~~ 160 (181)
T 2fck_A 113 GYGKE-ALTALILFCFERLELTRLEIVC-----------DPENVPSQALALRCGANREQL 160 (181)
T ss_dssp THHHH-HHHHHHHHHHHTSCCSEEEEEE-----------CTTCHHHHHHHHHTTCEEEEE
T ss_pred ChHHH-HHHHHHHHHHHhcCceEEEEEE-----------ccCCHHHHHHHHHcCCEEEEE
Confidence 35544 44667777877 6999999998 344567889899999976554
No 122
>1xrh_A Ureidoglycolate dehydrogenase; structural genomics, protein structure initiative, NYSGXRC, ALLD, GLXB8, B0517, PSI; 2.25A {Escherichia coli} SCOP: c.122.1.1
Probab=21.59 E-value=3.5e+02 Score=22.45 Aligned_cols=88 Identities=10% Similarity=0.049 Sum_probs=57.7
Q ss_pred cCCCCEEEEEecccc-eeeccCCCCCHHHHHHHHHHHHHHHHHcCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCC
Q psy3230 46 DLSGRETIARITGGM-KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNM 124 (151)
Q Consensus 46 D~~G~~~~~~sSgg~-g~k~~~rK~t~~Aa~~aa~~~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl 124 (151)
|++.++.+...++++ .+-+ ..---++++..+.+.++++|++.|+-.|.|+= ++-+|..-..+.++.. .|+
T Consensus 64 ~~~a~p~v~~~~~a~~~vDg-~~g~G~~~~~~am~~aiekAk~~Gi~~v~vrn-------s~H~G~~g~y~~~aa~-~Gl 134 (351)
T 1xrh_A 64 NREPEFRLEETGPCSAILHA-DNAAGQVAAKMGMEHAIKTAQQNGVAVVGISR-------MGHSGAISYFVQQAAR-AGF 134 (351)
T ss_dssp CSSCCCEEEECSSSEEEEEE-EEECHHHHHHHHHHHHHHHHHHHSEEEEEEEE-------ECCCCCTHHHHHHHHH-TTS
T ss_pred CCCCCcEEEEcCCcEEEEEC-CCCcHHHHHHHHHHHHHHHHHHcCEEEEEEeC-------CCCcchHHHHHHHHHH-CCC
Confidence 344444334444443 2222 22445788888999999999999999888875 3788988888877654 677
Q ss_pred eEEEEEecC--CCCCCCCCC
Q psy3230 125 KIGRIEDVT--PIPSDSTRR 142 (151)
Q Consensus 125 ~I~~I~D~T--piphNGCRp 142 (151)
-=+..+... -.|++|-+|
T Consensus 135 igi~~tNs~~~vaP~Gg~~~ 154 (351)
T 1xrh_A 135 IGISMCQSDPMVVPFGGAEI 154 (351)
T ss_dssp EEEEEECCCCCBCCTTBSSC
T ss_pred eEEEEeCCCCeeCCCCCCCC
Confidence 555555543 357777554
No 123
>2pdo_A Acetyltransferase YPEA; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: MSE; 2.00A {Shigella flexneri 2A}
Probab=21.49 E-value=1.8e+02 Score=18.99 Aligned_cols=46 Identities=15% Similarity=0.158 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHHHHHHHHHcCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeE
Q psy3230 69 ASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKI 126 (151)
Q Consensus 69 ~t~~Aa~~aa~~~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I 126 (151)
+.-++..+. +.+.+.+++.|+..|.+.+. .....+++...+.|+..
T Consensus 83 g~GiG~~Ll-~~~~~~~~~~g~~~i~l~v~-----------~~n~~a~~~Y~k~GF~~ 128 (144)
T 2pdo_A 83 GRGIANALL-NRLEKKLIARGCPKIQINVP-----------EDNDMVLGMYERLGYEH 128 (144)
T ss_dssp TSCHHHHHH-HHHHHHHHHTTCCEEEEEEE-----------SSCHHHHHHHHHTTCEE
T ss_pred CCcHHHHHH-HHHHHHHHHcCCCEEEEEEe-----------CCCHHHHHHHHHcCCcc
Confidence 334655544 55778889999999998872 33567888888889864
No 124
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=21.20 E-value=1.9e+02 Score=19.35 Aligned_cols=29 Identities=17% Similarity=0.127 Sum_probs=21.3
Q ss_pred CCHHHHHH-HHHHHHHHHHHcCceEEEEEE
Q psy3230 69 ASPYAAML-AAQDVAEKCKTLGITALHIKL 97 (151)
Q Consensus 69 ~t~~Aa~~-aa~~~~~k~~~~gi~~v~V~v 97 (151)
.|...|.. |.....+.+.++|+..|.|+-
T Consensus 44 ~tn~~aEl~A~~~aL~~a~~~~~~~v~i~t 73 (141)
T 3hst_B 44 ATNNVAEYRGLIAGLDDAVKLGATEAAVLM 73 (141)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHTCSEEEEEE
T ss_pred CchHHHHHHHHHHHHHHHHHCCCceEEEEe
Confidence 45666654 446677888899999998875
No 125
>1aq0_A 1,3-1,4-beta-glucanase; hydrolase, glycosidase, glycoprotein, glycosylated protein; HET: NAG; 2.00A {Hordeum vulgare} SCOP: c.1.8.3 PDB: 1ghr_A
Probab=20.59 E-value=1.2e+02 Score=24.82 Aligned_cols=34 Identities=26% Similarity=0.473 Sum_probs=25.0
Q ss_pred HHHHHHHcCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeEE
Q psy3230 81 VAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIG 127 (151)
Q Consensus 81 ~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~ 127 (151)
+++.++.+|++.|+++ +.. ..+|++|..+|+++.
T Consensus 18 vv~llk~~~i~~VRlY----------~~d---~~vL~A~~~tgi~v~ 51 (306)
T 1aq0_A 18 VVSMFKSNGIKSMRLY----------APN---QAALQAVGGTGINVV 51 (306)
T ss_dssp HHHHHHHHTCCEEEES----------SCC---HHHHHHHTTSCCEEE
T ss_pred HHHHHHhcCCCEEEEc----------CCC---HHHHHHHHhcCCEEE
Confidence 4455667899988776 222 688999999998874
No 126
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=20.44 E-value=1.8e+02 Score=21.55 Aligned_cols=44 Identities=14% Similarity=-0.005 Sum_probs=30.6
Q ss_pred HHHHHHHHHcCceEEEEEEEecCCCcccCC--CCCh---HHHHHHHHhCCCeEEEEE
Q psy3230 79 QDVAEKCKTLGITALHIKLRATGGNRTKTP--GPGA---QSALRALARSNMKIGRIE 130 (151)
Q Consensus 79 ~~~~~k~~~~gi~~v~V~vr~~~g~~~kG~--G~Gr---~~~ik~L~~~gl~I~~I~ 130 (151)
+.+++.+.++|+..|++.. ..+ +... +.+.+.|...|+.+.++.
T Consensus 33 ~~~l~~~~~~G~~~vEl~~--------~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~ 81 (257)
T 3lmz_A 33 DTTLKTLERLDIHYLCIKD--------FHLPLNSTDEQIRAFHDKCAAHKVTGYAVG 81 (257)
T ss_dssp HHHHHHHHHTTCCEEEECT--------TTSCTTCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHhCCCEEEEec--------ccCCCCCCHHHHHHHHHHHHHcCCeEEEEe
Confidence 5577888899999999886 111 2211 345566778899998875
No 127
>2d2r_A Undecaprenyl pyrophosphate synthase; prenyltransferase, transferase; 1.88A {Helicobacter pylori} PDB: 2dtn_A
Probab=20.41 E-value=2e+02 Score=22.81 Aligned_cols=58 Identities=12% Similarity=0.138 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHcCceEEEEEEEecCCCcccCCCCCh-----HHH-----------HHHHHhCCCeEEEEEecCCCC
Q psy3230 73 AAMLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGA-----QSA-----------LRALARSNMKIGRIEDVTPIP 136 (151)
Q Consensus 73 Aa~~aa~~~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~Gr-----~~~-----------ik~L~~~gl~I~~I~D~Tpip 136 (151)
++..+...+.+-|.++||+.|.|+- +..=+-.| +.. +..|...|+.|.-|-|...+|
T Consensus 43 ~G~~~l~~iv~~c~~~GI~~lTlYa-------FSteNwkRp~~EV~~Lm~l~~~~l~~~~~~l~~~~vrl~~iG~~~~lp 115 (245)
T 2d2r_A 43 KGVKTLKDITIWCANHKLECLTLYA-------FSTENWKRPKSEVDFLMKMLKKYLKDERSTYLDNNIRFRAIGDLEGFS 115 (245)
T ss_dssp HHHHHHHHHHHHHHTTTCSEEEEEC-------C----------CHHHHHHHHHHHHHHHHHHHHHTTCEEEEESCGGGSC
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEe-------ccCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEEecChhhCC
Confidence 3445667788899999999999996 12212223 111 122445789999999988887
Q ss_pred C
Q psy3230 137 S 137 (151)
Q Consensus 137 h 137 (151)
.
T Consensus 116 ~ 116 (245)
T 2d2r_A 116 K 116 (245)
T ss_dssp H
T ss_pred H
Confidence 4
No 128
>4h89_A GCN5-related N-acetyltransferase; N-acyltransferase superfamily, structural genomics, PSI-BIOL midwest center for structural genomics, MCSG; 1.37A {Kribbella flavida}
Probab=20.26 E-value=2.1e+02 Score=19.44 Aligned_cols=52 Identities=10% Similarity=0.121 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHHHHHHHHcCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeEE-EEEe
Q psy3230 69 ASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIG-RIED 131 (151)
Q Consensus 69 ~t~~Aa~~aa~~~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~-~I~D 131 (151)
+--++.. +.+.+.+.|.++|+..+.+..- + ..-..+++...+.|+... .+.+
T Consensus 102 g~GiG~~-Ll~~~~~~a~~~g~~~~~l~~~---------~-~~N~~A~~~y~k~GF~~~G~~~~ 154 (173)
T 4h89_A 102 GRGVGRA-LCQDMIDWAGREGFRAIQFNAV---------V-ETNTVAVKLWQSLGFRVIGTVPE 154 (173)
T ss_dssp TSSHHHH-HHHHHHHHHHHTTCSEEEEEEE---------E-TTCHHHHHHHHHTTCEEEEEEEE
T ss_pred cchHHHH-HHHHHHHHHHHCCCcEEEEeee---------c-ccCHHHHHHHHHCCCEEEEEEcc
Confidence 3346554 4466888899999999877431 1 234678898899999765 3444
No 129
>3dsb_A Putative acetyltransferase; APC60368.2, ST genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.48A {Clostridium difficile}
Probab=20.16 E-value=1.8e+02 Score=18.47 Aligned_cols=47 Identities=11% Similarity=0.038 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHHHHHHHHcC-ceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeEE
Q psy3230 69 ASPYAAMLAAQDVAEKCKTLG-ITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIG 127 (151)
Q Consensus 69 ~t~~Aa~~aa~~~~~k~~~~g-i~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~ 127 (151)
+--++.. +.+.+.+.+.+.| +..+.+.+. ..-..+++.+.+.|++..
T Consensus 98 g~Gig~~-ll~~~~~~~~~~~~~~~i~~~~~-----------~~n~~a~~~y~k~Gf~~~ 145 (157)
T 3dsb_A 98 RKGIFNY-LFNYIKNICDKDENIVGMRLYVE-----------KENINAKATYESLNMYEC 145 (157)
T ss_dssp SSSHHHH-HHHHHHHHHHHCTTEEEEEEEEE-----------TTCTTHHHHHHTTTCEEC
T ss_pred cCCHHHH-HHHHHHHHHHhcCCceEEEEecC-----------CCCHHHHHHHHHCCCEEe
Confidence 3346554 4466888999999 999998883 334467788888898653
No 130
>1wwz_A Hypothetical protein PH1933; structural genomics, pyrococcus horikoshii OT3, riken struct genomics/proteomics initiative, RSGI; HET: ACO; 1.75A {Pyrococcus horikoshii} SCOP: d.108.1.1
Probab=20.07 E-value=2e+02 Score=19.16 Aligned_cols=47 Identities=4% Similarity=-0.070 Sum_probs=34.0
Q ss_pred CHHHHHHHHHHHHHHHHHcCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeEEEE
Q psy3230 70 SPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIGRI 129 (151)
Q Consensus 70 t~~Aa~~aa~~~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~~I 129 (151)
--++.+ +.+.+.+.+.+.| ..|.+.+. .....+++...+.|+.....
T Consensus 100 ~GiG~~-Ll~~~~~~~~~~g-~~i~l~v~-----------~~N~~A~~fY~k~GF~~~~~ 146 (159)
T 1wwz_A 100 KGIGRK-LLITCLDFLGKYN-DTIELWVG-----------EKNYGAMNLYEKFGFKKVGK 146 (159)
T ss_dssp SSHHHH-HHHHHHHHHHTTC-SEEEEEEE-----------TTCHHHHHHHHHTTCEEEEE
T ss_pred CCHHHH-HHHHHHHHHHhcC-CEEEEEEe-----------CCCHHHHHHHHHCCCEEccc
Confidence 346554 4466778888899 99998882 33567888888999977654
Done!