RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3230
(151 letters)
>d2qalk1 c.55.4.1 (K:12-128) Ribosomal protein S11 {Escherichia coli
[TaxId: 562]}
Length = 117
Score = 121 bits (304), Expect = 5e-37
Identities = 46/119 (38%), Positives = 62/119 (52%), Gaps = 9/119 (7%)
Query: 29 GVAHIFASFNDTFVHVTDLSGRETIARITGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 88
GVAHI ASFN+T V +TD G GG +++P+AA +AA+ A+ K
Sbjct: 7 GVAHIHASFNNTIVTITDRQGNALGWATAGGS-GFRGSRKSTPFAAQVAAERCADAVKEY 65
Query: 89 GITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIGRIEDVTPIPSDSTRRKGGRR 147
GI L + + K PGPG +S +RAL + +I I DVTPIP + R RR
Sbjct: 66 GIKNLEVMV--------KGPGPGRESTIRALNAAGFRITNITDVTPIPHNGCRPPKKRR 116
>d2uubk1 c.55.4.1 (K:11-129) Ribosomal protein S11 {Thermus
thermophilus [TaxId: 274]}
Length = 119
Score = 112 bits (281), Expect = 1e-33
Identities = 41/119 (34%), Positives = 62/119 (52%), Gaps = 9/119 (7%)
Query: 29 GVAHIFASFNDTFVHVTDLSGRETIARITGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 88
G A+I AS+N+T V +TD G +GG+ + +PYAA LAA D A+K
Sbjct: 7 GRAYIHASYNNTIVTITDPDGNPITWS-SGGVIGYKGSRKGTPYAAQLAALDAAKKAMAY 65
Query: 89 GITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIGRIEDVTPIPSDSTRRKGGRR 147
G+ ++ + +R TG R + A+RAL S +++ I D TP+P + R K R
Sbjct: 66 GMQSVDVIVRGTGAGR--------EQAIRALQASGLQVKSIVDDTPVPHNGCRPKKKFR 116
>d1vlja_ e.22.1.2 (A:) NADH-dependent butanol dehydrogenase A
(TM0820) {Thermotoga maritima [TaxId: 2336]}
Length = 398
Score = 28.1 bits (61), Expect = 0.49
Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 6/65 (9%)
Query: 77 AAQDVAEKCKTLGIT-ALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIGRIEDVTPI 135
+ E+ K GI L + GG K G + +L + ++ + V P
Sbjct: 21 TIPKIGEEIKNAGIRKVLFL----YGGGSIKKNGV-YDQVVDSLKKHGIEWVEVSGVKPN 75
Query: 136 PSDST 140
P S
Sbjct: 76 PVLSK 80
>d1rrma_ e.22.1.2 (A:) Lactaldehyde reductase FucO {Escherichia coli
[TaxId: 562]}
Length = 385
Score = 27.3 bits (59), Expect = 0.82
Identities = 9/68 (13%), Positives = 21/68 (30%), Gaps = 5/68 (7%)
Query: 77 AAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIGRIEDVTPIP 136
A + ++ K G I T + + + + + V P P
Sbjct: 17 AVGALTDEVKRRGYQKALI---VTDKTLVQCGV--VAKVTDKMDAAGLAWAIYDGVVPNP 71
Query: 137 SDSTRRKG 144
+ + ++G
Sbjct: 72 TITVVKEG 79
>d2cyga1 c.1.8.3 (A:29-340) Plant beta-glucanases {Banana (Musa
acuminata), 1,3-beta-glucanase [TaxId: 4641]}
Length = 312
Score = 26.5 bits (58), Expect = 1.4
Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 16/67 (23%)
Query: 75 MLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMK--IG-RIED 131
+ +V K+ I ++L AL+AL SN++ + D
Sbjct: 12 LPPPSEVVSLYKSNNIA--RMRLYDPNQA-----------ALQALRNSNIQVLLDVPRSD 58
Query: 132 VTPIPSD 138
V + S+
Sbjct: 59 VQSLASN 65
>d1ghsa_ c.1.8.3 (A:) Plant beta-glucanases {Barley (Hordeum
vulgare), 1,3-beta-glucanase [TaxId: 4513]}
Length = 306
Score = 26.5 bits (58), Expect = 1.5
Identities = 9/49 (18%), Positives = 17/49 (34%), Gaps = 13/49 (26%)
Query: 78 AQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKI 126
DV + ++ GI +++ AL AL S + +
Sbjct: 15 RSDVVQLYRSKGIN--GMRIYFA-----------DGQALSALRNSGIGL 50
>d1aq0a_ c.1.8.3 (A:) Plant beta-glucanases {Barley (Hordeum
vulgare), 1,3-1,4-beta-glucanase [TaxId: 4513]}
Length = 306
Score = 26.1 bits (57), Expect = 2.0
Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 13/49 (26%)
Query: 78 AQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKI 126
A V K+ GI ++L A Q+AL+A+ + + +
Sbjct: 15 ASTVVSMFKSNGIK--SMRLYAP-----------NQAALQAVGGTGINV 50
>g1cp9.1 d.153.1.2 (A:,B:) Penicillin acylase {Providencia
rettgeri [TaxId: 587]}
Length = 750
Score = 25.0 bits (53), Expect = 5.1
Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 15/56 (26%)
Query: 26 DVFGVAHIFA-SFNDTF-----VHVTD---------LSGRETIARITGGMKVKADR 66
D +GV HI+A F D S + T++ + G + D+
Sbjct: 10 DNYGVPHIYANDTYSLFYGYGYAVAQDRLFQMEMAKRSTQGTVSEVFGKDYISFDK 65
>d1vj2a_ b.82.1.10 (A:) Hypothetical protein TM1459 {Thermotoga
maritima [TaxId: 2336]}
Length = 114
Score = 24.0 bits (51), Expect = 5.3
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 124 MKIGRIEDVTPIPSDSTRRKGGRR 147
M + R DVTP + + +G R+
Sbjct: 1 MILKRAYDVTPQKISTDKVRGVRK 24
>d2a5yb1 a.4.5.80 (B:386-543) Cell death protein 4, CED-4
{Caenorhabditis elegans [TaxId: 6239]}
Length = 158
Score = 23.9 bits (51), Expect = 8.7
Identities = 14/56 (25%), Positives = 19/56 (33%), Gaps = 3/56 (5%)
Query: 89 GITALHIKLRATGGNRTKTPG---PGAQSALRALARSNMKIGRIEDVTPIPSDSTR 141
GI+ L +L G N P P R + S M E+ P D +
Sbjct: 91 GISILEQRLLEIGNNNVSVPERHIPSHFQKFRRSSASEMYPKTTEETVIRPEDFPK 146
>d1ovya_ c.55.4.1 (A:) Ribosomal protein L18 (L18p) {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 97
Score = 23.3 bits (50), Expect = 10.0
Identities = 12/61 (19%), Positives = 22/61 (36%)
Query: 33 IFASFNDTFVHVTDLSGRETIARITGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITA 92
+F S + + D + TI + K + AA + VA++ GI
Sbjct: 10 VFRSNKHIYAQIIDDTKSATIVSASTLDKEFGLDSTNNIEAAKKVGELVAKRALEKGIKQ 69
Query: 93 L 93
+
Sbjct: 70 V 70
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.133 0.373
Gapped
Lambda K H
0.267 0.0419 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 523,033
Number of extensions: 21639
Number of successful extensions: 83
Number of sequences better than 10.0: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 15
Length of query: 151
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 73
Effective length of database: 1,336,656
Effective search space: 97575888
Effective search space used: 97575888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)