BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3231
(420 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 86/180 (47%), Gaps = 5/180 (2%)
Query: 114 MAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRH 173
AA +K Y C C + + +L H + H G K + C +C K+FS K +L++H R
Sbjct: 12 QAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRT 71
Query: 174 HM-ENVKQCKICLEIFEDDEVLEEHVKSHQNRR-FKCPCCERIFTSETRMRNHIDMKHAD 231
H E +C C + F L H ++H + + CP C + F+ +R H H
Sbjct: 72 HTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAH-QRTHTG 130
Query: 232 ENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDA 289
E +KC +C K FS E H H R H K Y+C EC K F+ D + H R + K+ +
Sbjct: 131 EKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKKTS 190
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 80/172 (46%), Gaps = 6/172 (3%)
Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHM-ENVKQCKICLEIFEDDEVLEEHVK 199
A + G K + C +C K+FS +L++H R H E +C C + F D + L H +
Sbjct: 11 AQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQR 70
Query: 200 SHQNRR-FKCPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA 258
+H + +KCP C + F+ +R H H E + C +C K FS H R H
Sbjct: 71 THTGEKPYKCPECGKSFSQRANLRAH-QRTHTGEKPYACPECGKSFSQLAHLRAHQRTHT 129
Query: 259 --KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDH 308
K Y+C EC K F+ ED + H R H E Y C C SF + L H
Sbjct: 130 GEKPYKCPECGKSFSREDNLHTHQRT-HTGEKPYKCPECGKSFSRRDALNVH 180
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 90 IQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGP 149
E+ +KC C KSF K ++ RH TH +K YKC C + + + NL+AH + H G
Sbjct: 45 TGEKPYKCPECGKSFSDKKDLTRHQR-THTGEKPYKCPECGKSFSQRANLRAHQRTHTGE 103
Query: 150 KIFTCAQCDKAFSLKSNLSKHVRHHMENVKQCKICLEIFEDDEVLEEHVKSHQNRRFKCP 209
K + C +C K+FS ++L H R H + +KCP
Sbjct: 104 KPYACPECGKSFSQLAHLRAHQRTHT--------------------------GEKPYKCP 137
Query: 210 CCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAH 257
C + F+ E + H H E +KC +C K FS ++H R H
Sbjct: 138 ECGKSFSREDNLHTH-QRTHTGEKPYKCPECGKSFSRRDALNVHQRTH 184
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 77/202 (38%), Gaps = 38/202 (18%)
Query: 206 FKCPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRC 263
+ CP C + F+ + H H E +KC +C K FSD+ H R H K Y+C
Sbjct: 22 YACPECGKSFSRSDHLAEH-QRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKC 80
Query: 264 SECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHFFHHGN--PYMCNHC 321
EC K F+ +R H R H E Y C C SF + L H H PY C C
Sbjct: 81 PECGKSFSQRANLRAHQRT-HTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPEC 139
Query: 322 FLMFPDEKNLRNHECTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYC 381
F E NL H QR + EK KC C
Sbjct: 140 GKSFSREDNLHTH-----------QRTHTGEKPY---------------------KCPEC 167
Query: 382 QRMFRNEDKLTAHELSHTMEKT 403
+ F D L H+ +HT +KT
Sbjct: 168 GKSFSRRDALNVHQRTHTGKKT 189
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 75/182 (41%), Gaps = 7/182 (3%)
Query: 161 FSLKSNLSKHVRHHMENVKQCKICLEIFEDDEVLEEHVKSHQNRR-FKCPCCERIFTSET 219
F S++++ E C C + F + L EH ++H + +KCP C + F+ +
Sbjct: 4 FGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKK 63
Query: 220 RMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMR 277
+ H H E +KC +C K FS H R H K Y C EC K F+ +R
Sbjct: 64 DLTRH-QRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLR 122
Query: 278 QHFRNYHNKEDAYVCNYCYDSFETKSTLVDHFFHHGN--PYMCNHCFLMFPDEKNLRNHE 335
H R H E Y C C SF + L H H PY C C F L H+
Sbjct: 123 AHQRT-HTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQ 181
Query: 336 CT 337
T
Sbjct: 182 RT 183
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 86/204 (42%), Gaps = 37/204 (18%)
Query: 4 KTYTCDFCSAAFALKHSIADHIQTEHMGNPKHQDTKQYPAFRNG-SFYIRADIEQPKVKV 62
K Y C C +F+ +A+H +T H K Y G SF + D+
Sbjct: 20 KPYACPECGKSFSRSDHLAEHQRT-------HTGEKPYKCPECGKSFSDKKDL------- 65
Query: 63 EHETIMSYARRQVEYEQEQQIPAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQK 122
R Q + E+ +KC C KSF ++N+R H TH +K
Sbjct: 66 --------TRHQRTH------------TGEKPYKCPECGKSFSQRANLRAHQ-RTHTGEK 104
Query: 123 KYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHM-ENVKQC 181
Y C C + + +L+AH + H G K + C +C K+FS + NL H R H E +C
Sbjct: 105 PYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKC 164
Query: 182 KICLEIFEDDEVLEEHVKSHQNRR 205
C + F + L H ++H ++
Sbjct: 165 PECGKSFSRRDALNVHQRTHTGKK 188
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 62/152 (40%), Gaps = 15/152 (9%)
Query: 259 KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHFFHHGN--PY 316
K Y C EC K F+ D + +H R H E Y C C SF K L H H PY
Sbjct: 20 KPYACPECGKSFSRSDHLAEHQRT-HTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPY 78
Query: 317 MCNHCFLMFPDEKNLRNHECT----SCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVL 372
C C F NLR H+ T + CP C + + HL H + P
Sbjct: 79 KCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKP----- 133
Query: 373 KTLQKCRYCQRMFRNEDKLTAHELSHTMEKTF 404
KC C + F ED L H+ +HT EK +
Sbjct: 134 ---YKCPECGKSFSREDNLHTHQRTHTGEKPY 162
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKI 151
E+ +KC C KSF SN+++H TH +K YKC C + + +L+ H + H G K
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQR-THTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKP 60
Query: 152 FTCAQCDKAFSLKSNLSKHVRHHM 175
+ C +C K+FS +LS+H R H
Sbjct: 61 YKCPECGKSFSRSDHLSRHQRTHQ 84
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 120 LQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHM-ENV 178
++K YKC C + + NL+ H + H G K + C +C K+FS S+L KH R H E
Sbjct: 1 MEKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKP 60
Query: 179 KQCKICLEIFEDDEVLEEHVKSHQNRR 205
+C C + F + L H ++HQN++
Sbjct: 61 YKCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 206 FKCPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRC 263
+KCP C + F+ + ++ H H E +KC +C K FS H R H K Y+C
Sbjct: 5 YKCPECGKSFSQSSNLQKH-QRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKC 63
Query: 264 SECEKRFATEDIMRQHFRNYHNKE 287
EC K F+ D + +H R + NK+
Sbjct: 64 PECGKSFSRSDHLSRHQRTHQNKK 87
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Query: 232 ENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDA 289
E +KC +C K FS H R H K Y+C EC K F+ +++H R H E
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRT-HTGEKP 60
Query: 290 YVCNYCYDSFETKSTLVDHFFHHGN 314
Y C C SF L H H N
Sbjct: 61 YKCPECGKSFSRSDHLSRHQRTHQN 85
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Query: 259 KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHFFHHGN--PY 316
K Y+C EC K F+ +++H R H E Y C C SF S L H H PY
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRT-HTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 317 MCNHCFLMFPDEKNLRNHECT 337
C C F +L H+ T
Sbjct: 62 KCPECGKSFSRSDHLSRHQRT 82
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 8/65 (12%)
Query: 340 FTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSHT 399
+ CP C + + +L+KH + P KC C + F L H+ +HT
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPY--------KCPECGKSFSQSSDLQKHQRTHT 56
Query: 400 MEKTF 404
EK +
Sbjct: 57 GEKPY 61
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 95 FKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
F C++C KSF S + H+ H + Y C+ C + + K ++K H +H G K C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLI-HSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 155 AQCDKAFSLKSNLSKHVRHH 174
C KAFS SNL H R H
Sbjct: 61 QVCGKAFSQSSNLITHSRKH 80
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 181 CKICLEIFEDDEVLEEHVKSHQNRR-FKCPCCERIFTSETRMRNHIDMKHADENLFKCKK 239
CKIC + F+ L H+ H + R + C C + F ++ M+ H + H E KC+
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFI-HTGEKPHKCQV 62
Query: 240 CLKVFSDEIKFHLHGRAHA 258
C K FS H R H
Sbjct: 63 CGKAFSQSSNLITHSRKHT 81
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 93 RKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKG 148
R + C+ C K F KS++++H H +K +KC++C + + NL H + H G
Sbjct: 28 RPYPCQYCGKRFHQKSDMKKH-TFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 235 FKCKKCLKVF--SDEIKFHLHGRAHAKFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVC 292
F CK C K F S + HL + + Y C C KRF + M++H H E + C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKH-TFIHTGEKPHKC 60
Query: 293 NYCYDSFETKSTLVDH 308
C +F S L+ H
Sbjct: 61 QVCGKAFSQSSNLITH 76
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 28/77 (36%), Gaps = 3/77 (3%)
Query: 261 YRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHFFHHGN--PYMC 318
+ C C K F + H H+ Y C YC F KS + H F H P+ C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLL-IHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 319 NHCFLMFPDEKNLRNHE 335
C F NL H
Sbjct: 61 QVCGKAFSQSSNLITHS 77
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 92 ERKFKC--EMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGP 149
ER + C E C + F K+N+ H+ H QK ++C++C R + + +L AH++ H G
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQQASLNAHIRTHTGE 60
Query: 150 KIFTCAQCDKAFSLKSNLSKHVRHHM 175
K F C C + F+ ++H + H+
Sbjct: 61 KPFACDICGRKFATLHTRTRHTKIHL 86
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 157 CDKAFSLKSNLSKHVR-HHMENVKQCKICLEIFEDDEVLEEHVKSHQNRR-FKCPCCERI 214
CD+ FS K+NL H+R H + QC+IC+ F L H+++H + F C C R
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRK 71
Query: 215 F-TSETRMR 222
F T TR R
Sbjct: 72 FATLHTRTR 80
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 204 RRFKCPC--CERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA--K 259
R + CP C+R F+ +T + HI + H + F+C+ C++ FS + + H R H K
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRI-HTGQKPFQCRICMRNFSQQASLNAHIRTHTGEK 61
Query: 260 FYRCSECEKRFATEDIMRQHFRNYHNKED 288
+ C C ++FAT +H + + ++D
Sbjct: 62 PFACDICGRKFATLHTRTRHTKIHLRQKD 90
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 10/67 (14%)
Query: 340 FTCPF--CQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELS 397
+ CP C R++ + +L+ HI P +CR C R F + L AH +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPF--------QCRICMRNFSQQASLNAHIRT 56
Query: 398 HTMEKTF 404
HT EK F
Sbjct: 57 HTGEKPF 63
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 57/110 (51%), Gaps = 8/110 (7%)
Query: 127 KLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKH-VRHHMENVKQCKI-- 183
K C +M+R ++ HL H GP++ CA+C KAF S L +H + H E QC
Sbjct: 11 KGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEG 69
Query: 184 CLEIFEDDEVLEEHVKSH-QNRRFKCP--CCERIFTSETRMRNHIDMKHA 230
C + F D L HV+ H +R + CP C + F T +++HI + HA
Sbjct: 70 CGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHI-LTHA 118
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 97 CEMCPKSFDHKSNIRRHMAATHDLQKKYKCKL--CARMYRYKWNLKAHLKMHKGPKIFTC 154
C C K+F S ++RH H +K ++C C + + +NL+ H+++H G + + C
Sbjct: 37 CAECGKAFVESSKLKRHQLV-HTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 95
Query: 155 A--QCDKAFSLKSNLSKHVRHHME 176
C+K F+ +NL H+ H +
Sbjct: 96 PFDGCNKKFAQSTNLKSHILTHAK 119
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 53/119 (44%), Gaps = 9/119 (7%)
Query: 90 IQERKFKC--EMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHK 147
++ R C + C K F S +R+H+ TH + + C C + + LK H +H
Sbjct: 1 MEPRTIACPHKGCTKMFRDNSAMRKHLH-THG-PRVHVCAECGKAFVESSKLKRHQLVHT 58
Query: 148 GPKIFTCA--QCDKAFSLKSNLSKHVRHHMEN---VKQCKICLEIFEDDEVLEEHVKSH 201
G K F C C K FSL NL HVR H + V C + F L+ H+ +H
Sbjct: 59 GEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 8/107 (7%)
Query: 238 KKCLKVFSDEIKFHLHGRAHA-KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNY-- 294
K C K+F D H H + + C+EC K F +++H + H E + C +
Sbjct: 11 KGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRH-QLVHTGEKPFQCTFEG 69
Query: 295 CYDSFETKSTLVDHF-FHHGN-PYMC--NHCFLMFPDEKNLRNHECT 337
C F L H H G+ PY+C + C F NL++H T
Sbjct: 70 CGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILT 116
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 124 YKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVR-HHMENVKQCK 182
+KC++C + + K LK H++ H G K + C CD A + S+L+KH+R H E +C+
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 183 ICLEIFEDDEVLEEHVKSHQN 203
IC + L H++SH
Sbjct: 69 ICPYASRNSSQLTVHLRSHTG 89
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 87 GKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMH 146
G S KCE+C K F K ++ HM H K YKCK C +L HL++H
Sbjct: 1 GSSGSSGPHKCEVCGKCFSRKDKLKTHMRC-HTGVKPYKCKTCDYAAADSSSLNKHLRIH 59
Query: 147 KGPKIFTCAQCDKAFSLKSNLSKHVRHHMEN 177
+ F C C A S L+ H+R H +
Sbjct: 60 SDERPFKCQICPYASRNSSQLTVHLRSHTGD 90
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 180 QCKICLEIFEDDEVLEEHVKSHQN-RRFKCPCCERIFTSETRMRNHIDMKHADENLFKCK 238
+C++C + F + L+ H++ H + +KC C+ + + H+ + H+DE FKC+
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRI-HSDERPFKCQ 68
Query: 239 KCLKVFSDEIKFHLHGRAH 257
C + + +H R+H
Sbjct: 69 ICPYASRNSSQLTVHLRSH 87
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
Query: 230 ADENLFKCKKCLKVFS--DEIKFHLHGRAHAKFYRCSECEKRFATEDIMRQHFRNYHNKE 287
KC+ C K FS D++K H+ K Y+C C+ A + +H R H+ E
Sbjct: 4 GSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLR-IHSDE 62
Query: 288 DAYVCNYCYDSFETKSTLVDHFFHH 312
+ C C + S L H H
Sbjct: 63 RPFKCQICPYASRNSSQLTVHLRSH 87
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 207 KCPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCS 264
KC C + F+ + +++ H+ H +KCK C +D + H R H+ + ++C
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRC-HTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 265 ECEKRFATEDIMRQHFRNY 283
C + H R++
Sbjct: 69 ICPYASRNSSQLTVHLRSH 87
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 92 ERKFKC--EMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGP 149
ER + C E C + F SN+ RH+ H QK ++C++C R + +L H++ H G
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 150 KIFTCAQCDKAFSLKSNLSKHVRHHM 175
K F C C + F+ +H + H+
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHL 86
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 157 CDKAFSLKSNLSKHVR-HHMENVKQCKICLEIFEDDEVLEEHVKSHQNRR-FKCPCCERI 214
CD+ FS SNL++H+R H + QC+IC+ F + L H+++H + F C C R
Sbjct: 12 CDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 215 FTSETRMRNHIDM 227
F + H +
Sbjct: 72 FARSDERKRHTKI 84
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 204 RRFKCPC--CERIFTSETRMRNHIDMKHADENLFKCKKCLKVFS--DEIKFHLHGRAHAK 259
R + CP C+R F+ + + HI + H + F+C+ C++ FS D + H+ K
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 260 FYRCSECEKRFATEDIMRQHFRNYHNKED 288
+ C C ++FA D ++H + + ++D
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 10/67 (14%)
Query: 340 FTCPF--CQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELS 397
+ CP C R++ +L +HI T K Q CR C R F D LT H +
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIR-------IHTGQKPFQ-CRICMRNFSRSDHLTTHIRT 56
Query: 398 HTMEKTF 404
HT EK F
Sbjct: 57 HTGEKPF 63
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 31/94 (32%), Gaps = 14/94 (14%)
Query: 315 PYMC--NHCFLMFPDEKNL----RNHECTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPT 368
PY C C F D NL R H F C C R + HL HI + P
Sbjct: 4 PYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEK 402
C C R F D+ H H +K
Sbjct: 64 A--------CDICGRKFARSDERKRHTKIHLRQK 89
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 89 SIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKG 148
S ++ + C+ C KSF HKS RHM+ H + Y C +C + ++ K +L H+K+H G
Sbjct: 5 SSGDKLYPCQ-CGKSFTHKSQRDRHMS-MHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTG 62
Query: 149 PKIFTCAQCDKAFSLKSNLSKHV 171
K + C C K F + + +HV
Sbjct: 63 IKPYECNICAKRFMWRDSFHRHV 85
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 122 KKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENVK-- 179
K Y C+ C + + +K H+ MH G + + C C K F +K +L H++ H +K
Sbjct: 9 KLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHT-GIKPY 66
Query: 180 QCKICLEIFEDDEVLEEHVKS 200
+C IC + F + HV S
Sbjct: 67 ECNICAKRFMWRDSFHRHVTS 87
Score = 31.6 bits (70), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 35/88 (39%), Gaps = 5/88 (5%)
Query: 254 GRAHAKFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHF-FHH 312
G + K Y C +C K F T R + H Y C C F+ K LV H H
Sbjct: 4 GSSGDKLYPC-QCGKSF-THKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHT 61
Query: 313 G-NPYMCNHCFLMFPDEKNLRNHECTSC 339
G PY CN C F + H TSC
Sbjct: 62 GIKPYECNICAKRFMWRDSFHRH-VTSC 88
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Query: 209 PC-CERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGR----AHAKFYRC 263
PC C + FT +++ H+ M H + C C K F ++K HL G K Y C
Sbjct: 12 PCQCGKSFTHKSQRDRHMSM-HLGLRPYGCGVCGKKF--KMKHHLVGHMKIHTGIKPYEC 68
Query: 264 SECEKRFATEDIMRQHF 280
+ C KRF D +H
Sbjct: 69 NICAKRFMWRDSFHRHV 85
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 46/121 (38%), Gaps = 28/121 (23%)
Query: 148 GPKIFTCAQCDKAFSLKSNLSKHVRHHMENVKQCKICLEIFEDDEVLEEHVKSHQNRRFK 207
G K++ C QC K+F+ KS +H+ H+ R +
Sbjct: 7 GDKLYPC-QCGKSFTHKSQRDRHMSMHL--------------------------GLRPYG 39
Query: 208 CPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHAKFYRCSECE 267
C C + F + + H+ + H ++C C K F FH H + K Y ++ E
Sbjct: 40 CGVCGKKFKMKHHLVGHMKI-HTGIKPYECNICAKRFMWRDSFHRHVTSCTKSYEAAKAE 98
Query: 268 K 268
+
Sbjct: 99 Q 99
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 92 ERKFKC--EMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGP 149
ER + C E C + F K+N+ H+ H QK ++C++C R + L H++ H G
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRI-HTGQKPFQCRICMRNFSQHTGLNQHIRTHTGE 60
Query: 150 KIFTCAQCDKAFSLKSNLSKHVRHHM 175
K F C C + F+ +H + H+
Sbjct: 61 KPFACDICGRKFATLHTRDRHTKIHL 86
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 157 CDKAFSLKSNLSKHVR-HHMENVKQCKICLEIFEDDEVLEEHVKSHQNRR-FKCPCCERI 214
CD+ FS K+NL H+R H + QC+IC+ F L +H+++H + F C C R
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRK 71
Query: 215 FTS 217
F +
Sbjct: 72 FAT 74
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 10/87 (11%)
Query: 204 RRFKCPC--CERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA--K 259
R + CP C+R F+ +T + HI + H + F+C+ C++ FS + H R H K
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRI-HTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEK 61
Query: 260 FYRCSECEKRFATEDIMRQHFRNYHNK 286
+ C C ++FAT H R+ H K
Sbjct: 62 PFACDICGRKFAT-----LHTRDRHTK 83
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 10/67 (14%)
Query: 340 FTCPF--CQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELS 397
+ CP C R++ + +L+ HI P +CR C R F L H +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPF--------QCRICMRNFSQHTGLNQHIRT 56
Query: 398 HTMEKTF 404
HT EK F
Sbjct: 57 HTGEKPF 63
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 92 ERKFKC--EMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGP 149
ER + C E C + F +++ RH+ H QK ++C++C R + +L H++ H G
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 150 KIFTCAQCDKAFSLKSNLSKHVRHHM 175
K F C C + F+ +H + H+
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHL 86
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 157 CDKAFSLKSNLSKHVR-HHMENVKQCKICLEIFEDDEVLEEHVKSHQNRR-FKCPCCERI 214
CD+ FS ++L++H+R H + QC+IC+ F + L H+++H + F C C R
Sbjct: 12 CDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 215 FTSETRMRNHIDM 227
F + H +
Sbjct: 72 FARSDERKRHTKI 84
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 204 RRFKCPC--CERIFTSETRMRNHIDMKHADENLFKCKKCLKVFS--DEIKFHLHGRAHAK 259
R + CP C+R F+ + HI + H + F+C+ C++ FS D + H+ K
Sbjct: 3 RPYACPVESCDRRFSRSADLTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 260 FYRCSECEKRFATEDIMRQHFRNYHNKED 288
+ C C ++FA D ++H + + ++D
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 10/67 (14%)
Query: 340 FTCPF--CQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELS 397
+ CP C R++ L +HI P +CR C R F D LT H +
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPF--------QCRICMRNFSRSDHLTTHIRT 56
Query: 398 HTMEKTF 404
HT EK F
Sbjct: 57 HTGEKPF 63
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 5/114 (4%)
Query: 125 KCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKH-VRHHM---ENVKQ 180
+C C + + K+ LK H + H G K F C +C K + K NL +H R+ M E V
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFT 68
Query: 181 CKICLEIFEDDEVLEEHVKSHQNRR-FKCPCCERIFTSETRMRNHIDMKHADEN 233
C +C E F L H+ SH +KC C + F + +++H+ H+ +
Sbjct: 69 CSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 88 KSIQERKFKCEMCPKSFDHKSNIRRHMA--ATHDLQKKYKCKLCARMYRYKWNLKAHLKM 145
K E+ F+C C K + K N+ H A + ++ + C +C +R + L+ H+
Sbjct: 29 KHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVS 88
Query: 146 HKGPKIFTCAQCDKAFSLKSNLSKHV 171
H G + C+ C + F K +L H+
Sbjct: 89 HTGEMPYKCSSCSQQFMQKKDLQSHM 114
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 51/115 (44%), Gaps = 5/115 (4%)
Query: 180 QCKICLEIFEDDEVLEEHVKSHQNRR-FKCPCCERIFTSETRMRNH--IDMKHADENLFK 236
+C C + F L+ H + H + F+CP C + + + + H + + E +F
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFT 68
Query: 237 CKKCLKVFSDEIKFHLHGRAHAK--FYRCSECEKRFATEDIMRQHFRNYHNKEDA 289
C C + F ++ LH +H Y+CS C ++F + ++ H H+ +
Sbjct: 69 CSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPSS 123
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 44/114 (38%), Gaps = 17/114 (14%)
Query: 292 CNYCYDSFETKSTLVDHFFHHGN--PYMCNHCFLMFPDEKNLRNHECTSC-------FTC 342
C C+ F +K L H H P+ C C + ++NL HE +C FTC
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTC 69
Query: 343 PFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHEL 396
CQ ++ L H+ S P KC C + F + L +H +
Sbjct: 70 SVCQETFRRRMELRLHMVSHTGEMPY--------KCSSCSQQFMQKKDLQSHMI 115
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 7/74 (9%)
Query: 332 RNHECTSCFTCPFCQRKY-KIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDK 390
R H F CP C + Y + E LE +C +N + V C CQ FR +
Sbjct: 28 RKHTGEKPFECPKCGKCYFRKENLLEHEARNC--MNRSEQVFT----CSVCQETFRRRME 81
Query: 391 LTAHELSHTMEKTF 404
L H +SHT E +
Sbjct: 82 LRLHMVSHTGEMPY 95
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 92 ERKFKC--EMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGP 149
ER + C E C + F ++ RH+ H QK ++C++C R + +L H++ H G
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 150 KIFTCAQCDKAFSLKSNLSKHVRHHM 175
K F C C + F+ +H + H+
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHL 86
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 157 CDKAFSLKSNLSKHVR-HHMENVKQCKICLEIFEDDEVLEEHVKSHQNRR-FKCPCCERI 214
CD+ FS +L++H+R H + QC+IC+ F + L H+++H + F C C R
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 215 FTSETRMRNHIDM 227
F + H +
Sbjct: 72 FARSDERKRHTKI 84
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 204 RRFKCPC--CERIFTSETRMRNHIDMKHADENLFKCKKCLKVFS--DEIKFHLHGRAHAK 259
R + CP C+R F+ + HI + H + F+C+ C++ FS D + H+ K
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 260 FYRCSECEKRFATEDIMRQHFRNYHNKED 288
+ C C ++FA D ++H + + ++D
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 29/67 (43%), Gaps = 10/67 (14%)
Query: 340 FTCPF--CQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELS 397
+ CP C R++ L +HI T K Q CR C R F D LT H +
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIR-------IHTGQKPFQ-CRICMRNFSRSDHLTTHIRT 56
Query: 398 HTMEKTF 404
HT EK F
Sbjct: 57 HTGEKPF 63
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 92 ERKFKC--EMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGP 149
ER + C E C + F + + RH+ H QK ++C++C R + +L H++ H G
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 150 KIFTCAQCDKAFSLKSNLSKHVRHHM 175
K F C C + F+ +H + H+
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHL 86
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 157 CDKAFSLKSNLSKHVR-HHMENVKQCKICLEIFEDDEVLEEHVKSHQNRR-FKCPCCERI 214
CD+ FS + L++H+R H + QC+IC+ F + L H+++H + F C C R
Sbjct: 12 CDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 215 FTSETRMRNHIDM 227
F + H +
Sbjct: 72 FARSDERKRHTKI 84
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 204 RRFKCPC--CERIFTSETRMRNHIDMKHADENLFKCKKCLKVFS--DEIKFHLHGRAHAK 259
R + CP C+R F+ + HI + H + F+C+ C++ FS D + H+ K
Sbjct: 3 RPYACPVESCDRRFSRSAELTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 260 FYRCSECEKRFATEDIMRQHFRNYHNKED 288
+ C C ++FA D ++H + + ++D
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 10/67 (14%)
Query: 340 FTCPF--CQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELS 397
+ CP C R++ L +HI P +CR C R F D LT H +
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPF--------QCRICMRNFSRSDHLTTHIRT 56
Query: 398 HTMEKTF 404
HT EK F
Sbjct: 57 HTGEKPF 63
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 92 ERKFKC--EMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGP 149
ER + C E C + F + RH+ H QK ++C++C R + +L H++ H G
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 59
Query: 150 KIFTCAQCDKAFSLKSNLSKHVRHHM 175
K F C C + F+ +H + H+
Sbjct: 60 KPFACDICGRKFARSDERKRHTKIHL 85
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 157 CDKAFSLKSNLSKHVR-HHMENVKQCKICLEIFEDDEVLEEHVKSHQNRR-FKCPCCERI 214
CD+ FS L++H+R H + QC+IC+ F + L H+++H + F C C R
Sbjct: 11 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 70
Query: 215 FTSETRMRNHIDM 227
F + H +
Sbjct: 71 FARSDERKRHTKI 83
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 204 RRFKCPC--CERIFTSETRMRNHIDMKHADENLFKCKKCLKVFS--DEIKFHLHGRAHAK 259
R + CP C+R F+ + HI + H + F+C+ C++ FS D + H+ K
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60
Query: 260 FYRCSECEKRFATEDIMRQH 279
+ C C ++FA D ++H
Sbjct: 61 PFACDICGRKFARSDERKRH 80
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 10/67 (14%)
Query: 340 FTCPF--CQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELS 397
+ CP C R++ L +HI P +CR C R F D LT H +
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPF--------QCRICMRNFSRSDHLTTHIRT 55
Query: 398 HTMEKTF 404
HT EK F
Sbjct: 56 HTGEKPF 62
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 266 CEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHFFHHGN--PYMCNHCFL 323
C++RF+ D + +H R H + + C C +F L H H P+ C+ C
Sbjct: 11 CDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 69
Query: 324 MFPDEKNLRNH 334
F + H
Sbjct: 70 KFARSDERKRH 80
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 245 SDEIKFHLHGRAHAKFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSF 299
SDE+ H+ K ++C C + F+ D + H R H E + C+ C F
Sbjct: 18 SDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKF 71
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 92 ERKFKC--EMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGP 149
ER + C E C + F + RH+ H QK ++C++C R + +L H++ H G
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 150 KIFTCAQCDKAFSLKSNLSKHVRHHM 175
K F C C + F+ +H + H+
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHL 86
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 146 HKGPKIFTCAQCDKAFSLKSNLSKHVR-HHMENVKQCKICLEIFEDDEVLEEHVKSHQNR 204
H+ P CD+ FS L++H+R H + QC+IC+ F + L H+++H
Sbjct: 1 HERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 205 R-FKCPCCERIFTSETRMRNHIDM 227
+ F C C R F + H +
Sbjct: 61 KPFACDICGRKFARSDERKRHTKI 84
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 204 RRFKCPC--CERIFTSETRMRNHIDMKHADENLFKCKKCLKVFS--DEIKFHLHGRAHAK 259
R + CP C+R F+ + HI + H + F+C+ C++ FS D + H+ K
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 260 FYRCSECEKRFATEDIMRQH 279
+ C C ++FA D ++H
Sbjct: 62 PFACDICGRKFARSDERKRH 81
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 10/67 (14%)
Query: 340 FTCPF--CQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELS 397
+ CP C R++ L +HI P +CR C R F D LT H +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPF--------QCRICMRNFSRSDHLTTHIRT 56
Query: 398 HTMEKTF 404
HT EK F
Sbjct: 57 HTGEKPF 63
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 5/82 (6%)
Query: 257 HAKFYRCS--ECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHFFHHGN 314
H + Y C C++RF+ D + +H R H + + C C +F L H H
Sbjct: 1 HERPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Query: 315 --PYMCNHCFLMFPDEKNLRNH 334
P+ C+ C F + H
Sbjct: 60 EKPFACDICGRKFARSDERKRH 81
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 245 SDEIKFHLHGRAHAKFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSF 299
SDE+ H+ K ++C C + F+ D + H R H E + C+ C F
Sbjct: 19 SDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKF 72
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 92 ERKFKC--EMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGP 149
ER + C E C + F + RH+ H QK ++C++C R + +L H++ H G
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 150 KIFTCAQCDKAFSLKSNLSKHVRHHM 175
K F C C + F+ +H + H+
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHL 86
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 157 CDKAFSLKSNLSKHVR-HHMENVKQCKICLEIFEDDEVLEEHVKSHQNRR-FKCPCCERI 214
CD+ FS L++H+R H + QC+IC+ F + L H+++H + F C C R
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 215 FTSETRMRNHIDM 227
F + H +
Sbjct: 72 FARSDERKRHTKI 84
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 204 RRFKCPC--CERIFTSETRMRNHIDMKHADENLFKCKKCLKVFS--DEIKFHLHGRAHAK 259
R + CP C+R F+ + HI + H + F+C+ C++ FS D + H+ K
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 260 FYRCSECEKRFATEDIMRQHFRNYHNKED 288
+ C C ++FA D ++H + + ++D
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 10/67 (14%)
Query: 340 FTCPF--CQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELS 397
+ CP C R++ L +HI P +CR C R F D LT H +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPF--------QCRICMRNFSRSDHLTTHIRT 56
Query: 398 HTMEKTF 404
HT EK F
Sbjct: 57 HTGEKPF 63
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 129 CARMYRYKWNLKAHLKMHKGPKIFTCA--QCDKAFSLKSNLSKHVRHHMENVK-QCKICL 185
C ++Y +LKAHL+ H G K + C CD F+ L++H R H QC +C
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 186 EIFEDDEVLEEHVKSHQN 203
F + L H+K HQN
Sbjct: 83 RSFSRSDHLALHMKRHQN 100
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
Query: 85 AQGKSIQERKFK-CE--MCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWN--L 139
+ G +++R+ C+ C K + S+++ H+ TH +K YKC +R+ + L
Sbjct: 5 SSGPDLEKRRIHYCDYPGCTKVYTKSSHLKAHLR-THTGEKPYKCTWEGCDWRFARSDEL 63
Query: 140 KAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
H + H G K F C C+++FS +L+ H++ H
Sbjct: 64 TRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 209 PCCERIFTSETRMRNHIDMKHADENLFKC--KKCLKVF--SDEIKFHLHGRAHAKFYRCS 264
P C +++T + ++ H+ H E +KC + C F SDE+ H AK ++C
Sbjct: 21 PGCTKVYTKSSHLKAHLRT-HTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCG 79
Query: 265 ECEKRFATEDIMRQHFRNYHN 285
C + F+ D + H + + N
Sbjct: 80 VCNRSFSRSDHLALHMKRHQN 100
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 31/81 (38%), Gaps = 14/81 (17%)
Query: 326 PDEKNLRNHECTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRY--CQR 383
PD + R H C P C + Y HL+ H+ + P KC + C
Sbjct: 8 PDLEKRRIHYCDY----PGCTKVYTKSSHLKAHLRTHTGEKP--------YKCTWEGCDW 55
Query: 384 MFRNEDKLTAHELSHTMEKTF 404
F D+LT H HT K F
Sbjct: 56 RFARSDELTRHYRKHTGAKPF 76
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 28/53 (52%)
Query: 122 KKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
K YKC C +RYK NL +H +H G K + C C F+ +NL H R H
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPK 150
++ +KC+ C SF +K N+ H H +K Y+C +C + NLK H ++H G K
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKT-VHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 287 EDAYVCNYCYDSFETKSTLVDH-FFHHG-NPYMCNHCFLMFPDEKNLRNH 334
+ Y C+ C SF K L H H G PY CN C F NL+ H
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH 64
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 259 KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDH 308
K Y+C C+ F + + H + H E Y CN C F + L H
Sbjct: 16 KPYKCDRCQASFRYKGNLASH-KTVHTGEKPYRCNICGAQFNRPANLKTH 64
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 377 KCRYCQRMFRNEDKLTAHELSHTMEKTFYRNV 408
KC CQ FR + L +H+ HT EK + N+
Sbjct: 19 KCDRCQASFRYKGNLASHKTVHTGEKPYRCNI 50
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 45.1 bits (105), Expect = 7e-05, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 97 CEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGP--KIFTC 154
CE+C K F ++ RH +H +K Y C +C ++ K + H++ H G K + C
Sbjct: 10 CEICGKIFRDVYHLNRH-KLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYIC 68
Query: 155 AQCDKAFSLKSNLSKHVRH 173
C K FS +L+ H++
Sbjct: 69 QSCGKGFSRPDHLNGHIKQ 87
Score = 43.5 bits (101), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 126 CKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENVKQ---CK 182
C++C +++R ++L H H G K ++C C F K +S HVR H +V + C+
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 183 ICLEIFEDDEVLEEHVK 199
C + F + L H+K
Sbjct: 70 SCGKGFSRPDHLNGHIK 86
Score = 35.8 bits (81), Expect = 0.052, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 208 CPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAH----AKFYRC 263
C C +IF + H + H+ E + C C F + + H R+H K Y C
Sbjct: 10 CEICGKIFRDVYHLNRH-KLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYIC 68
Query: 264 SECEKRFATEDIMRQHFRNYHN 285
C K F+ D + H + H+
Sbjct: 69 QSCGKGFSRPDHLNGHIKQVHS 90
Score = 32.7 bits (73), Expect = 0.44, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 154 CAQCDKAFSLKSNLSKH-VRHHMENVKQCKICLEIFEDDEVLEEHVKSHQ---NRRFKCP 209
C C K F +L++H + H E C +C F+ + + HV+SH + + C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 210 CCERIFTSETRMRNHIDMKHA 230
C + F+ + HI H+
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHS 90
Score = 31.2 bits (69), Expect = 1.1, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 37/100 (37%), Gaps = 27/100 (27%)
Query: 237 CKKCLKVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNY 294
C+ C K+F D + H +H+ K Y C C RF +D M H R++ D V
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSH----DGSV--- 62
Query: 295 CYDSFETKSTLVDHFFHHGNPYMCNHCFLMFPDEKNLRNH 334
G PY+C C F +L H
Sbjct: 63 ------------------GKPYICQSCGKGFSRPDHLNGH 84
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 82 QIPAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKA 141
++P++ K ++F C+ C + F N+ H TH ++ Y C +C + +R + +L+
Sbjct: 9 RLPSKTK----KEFICKFCGRHFTKSYNLLIH-ERTHTDERPYTCDICHKAFRRQDHLRD 63
Query: 142 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHMEN 177
H +H K F C +C K F L+ H HM+
Sbjct: 64 HRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQT 99
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 181 CKICLEIFEDDEVLEEHVKSHQNRR-FKCPCCERIFTSETRMRNHIDMKHADENLFKCKK 239
CK C F L H ++H + R + C C + F + +R+H + H+ E FKC++
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYI-HSKEKPFKCQE 78
Query: 240 CLKVFSDEIKFHLHGRAH 257
C K F +H H
Sbjct: 79 CGKGFCQSRTLAVHKTLH 96
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Query: 198 VKSHQNRRFKCPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVF--SDEIKFHLHGR 255
+ S + F C C R FT + H + H DE + C C K F D ++ H +
Sbjct: 10 LPSKTKKEFICKFCGRHFTKSYNLLIH-ERTHTDERPYTCDICHKAFRRQDHLRDHRYIH 68
Query: 256 AHAKFYRCSECEKRFATEDIMRQH 279
+ K ++C EC K F + H
Sbjct: 69 SKEKPFKCQECGKGFCQSRTLAVH 92
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 259 KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHFFHHG--NPY 316
K + C C + F + H R H E Y C+ C+ +F + L DH + H P+
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERT-HTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPF 74
Query: 317 MCNHCFLMFPDEKNLRNHE 335
C C F + L H+
Sbjct: 75 KCQECGKGFCQSRTLAVHK 93
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 147 KGPKIFTCAQCDKAFSLKSNLSKHVRHHM-ENVKQCKICLEIFEDDEVLEEHVKSHQNRR 205
K K F C C + F+ NL H R H E C IC + F + L +H H +
Sbjct: 13 KTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEK 72
Query: 206 -FKCPCCERIF 215
FKC C + F
Sbjct: 73 PFKCQECGKGF 83
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 8/65 (12%)
Query: 340 FTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSHT 399
F C FC R + +L H + P T C C + FR +D L H H+
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYT--------CDICHKAFRRQDHLRDHRYIHS 69
Query: 400 MEKTF 404
EK F
Sbjct: 70 KEKPF 74
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 91 QERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKG 148
+ R++KC+ C KSF H S++ +H TH +K YKC C + + + +L H ++H G
Sbjct: 15 ERRRYKCDECGKSFSHSSDLSKHR-RTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%)
Query: 121 QKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHMEN 177
+++YKC C + + + +L H + H G K + C +C KAF +S+L H R H +
Sbjct: 16 RRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGS 72
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
Query: 235 FKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMRQHFRNYH 284
+KC +C K FS H R H K Y+C EC K F I R H +H
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAF----IQRSHLIGHH 66
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 202 QNRRFKCPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA 258
+ RR+KC C + F+ + + H H E +KC +C K F H R H
Sbjct: 15 ERRRYKCDECGKSFSHSSDLSKH-RRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHT 70
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 113 HMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVR 172
H D + Y C +C R Y +L+ H +H K + C C+K F L +KH
Sbjct: 12 HYELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEI 71
Query: 173 HHM-ENVKQCKICLEIFEDDEVLEEHVKS 200
HH E QC C + F + + + H+KS
Sbjct: 72 HHTGERRYQCLACGKSFINYQFMSSHIKS 100
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 49/101 (48%), Gaps = 5/101 (4%)
Query: 72 RRQVEYEQEQQIPAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCAR 131
R +V+++ ++ G+ + C +C +S+ +++RRH H +KKY C+ C +
Sbjct: 4 RMKVKHDDHYELIVDGRVY----YICIVCKRSYVCLTSLRRHFN-IHSWEKKYPCRYCEK 58
Query: 132 MYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVR 172
++ H H G + + C C K+F +S H++
Sbjct: 59 VFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSHIK 99
Score = 35.4 bits (80), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 206 FKCPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFS---DEIKFHLHGRAHAKFYR 262
+ C C+R + T +R H ++ H+ E + C+ C KVF K +H + Y+
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNI-HSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERR-YQ 80
Query: 263 CSECEKRFATEDIMRQHFRNYHNKEDA 289
C C K F M H ++ H+++ +
Sbjct: 81 CLACGKSFINYQFMSSHIKSVHSQDPS 107
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 6/91 (6%)
Query: 246 DEIKFHLHGRAHAKFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTL 305
D + + GR +Y C C++ + +R+HF N H+ E Y C YC F
Sbjct: 11 DHYELIVDGRV---YYICIVCKRSYVCLTSLRRHF-NIHSWEKKYPCRYCEKVFPLAEYR 66
Query: 306 VDHFFHHGNP--YMCNHCFLMFPDEKNLRNH 334
H HH Y C C F + + + +H
Sbjct: 67 TKHEIHHTGERRYQCLACGKSFINYQFMSSH 97
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 12/67 (17%)
Query: 340 FTCPFCQRKYKIEKHLEKH--IESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELS 397
+ C C+R Y L +H I S + P CRYC+++F + T HE+
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYP----------CRYCEKVFPLAEYRTKHEIH 72
Query: 398 HTMEKTF 404
HT E+ +
Sbjct: 73 HTGERRY 79
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 48/99 (48%), Gaps = 13/99 (13%)
Query: 110 IRRHMAATHDLQKKYKCKL--CARMYRYKWNLKAHLKMHKGPKIFTCAQ--CDKAFSLKS 165
+RRH +K +KC C + Y NLK HL+ H G K + C C KAFS S
Sbjct: 59 MRRHTG-----EKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNAS 113
Query: 166 NLSKHVR--HHMENVKQCKI--CLEIFEDDEVLEEHVKS 200
+ +KH H E CK+ C + + D L +HVK+
Sbjct: 114 DRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKT 152
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 67/151 (44%), Gaps = 16/151 (10%)
Query: 96 KCEMCPKSFDHKSNIRRHMAA--THDLQKKYKCKLCA-----RMYRYKWNLKAHLKMHKG 148
+ + C + FD + + H+ + H +K++ C R ++ ++ L H++ H G
Sbjct: 5 RWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTG 64
Query: 149 PKIFTCA--QCDKAFSLKSNLSKHVRHHM-ENVKQCK--ICLEIFEDDEVLEEHV-KSHQ 202
K C C K++S NL H+R H E C+ C + F + +H ++H
Sbjct: 65 EKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHS 124
Query: 203 NRRF---KCPCCERIFTSETRMRNHIDMKHA 230
N + K P C + +T + +R H+ H
Sbjct: 125 NEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 65/155 (41%), Gaps = 21/155 (13%)
Query: 9 DFCSAAFALKHSIADHIQTEHMGNPKHQDTKQYPAFRNG----------SFYIRADIEQP 58
D CS F + + HI +EH+ H + K++ G + + + +
Sbjct: 7 DGCSQEFDSQEQLVHHINSEHI----HGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRH 62
Query: 59 KVKVEHETIMSYARRQVEYEQEQQIPAQGKS-IQERKFKCE--MCPKSFDHKSNIRRHMA 115
+ H+ R+ Y + + + +S E+ + CE C K+F + S+ +H
Sbjct: 63 TGEKPHKCTFEGCRKS--YSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQN 120
Query: 116 ATHDLQKKYKCKL--CARMYRYKWNLKAHLKMHKG 148
TH +K Y CKL C + Y +L+ H+K G
Sbjct: 121 RTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 58/143 (40%), Gaps = 18/143 (12%)
Query: 184 CLEIFEDDEVLEEHVKS---HQNRR-FKC---PCCE--RIFTSETRMRNHIDMKHADENL 234
C + F+ E L H+ S H R+ F C C R F ++ + H+ +H E
Sbjct: 9 CSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHM-RRHTGEKP 67
Query: 235 FKC--KKCLKVFS--DEIKFHLHGRAHAKFYRCS--ECEKRFATEDIMRQHFRNYHNKED 288
KC + C K +S + +K HL K Y C C K F+ +H H+ E
Sbjct: 68 HKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEK 127
Query: 289 AYVCNY--CYDSFETKSTLVDHF 309
YVC C + S+L H
Sbjct: 128 PYVCKLPGCTKRYTDPSSLRKHV 150
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 8/106 (7%)
Query: 129 CARMYRYKWNLKAHLKMHKGPKIFTC--AQCDKAFSLKSNLSKHVRHHMENVK--QCKIC 184
C + Y +L+ H + H G K + C C++ FS L +H R H VK QCK C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHT-GVKPFQCKTC 72
Query: 185 LEIFEDDEVLEEHVKSHQNRR-FKC--PCCERIFTSETRMRNHIDM 227
F + L+ H ++H + F C P C++ F + H +M
Sbjct: 73 QRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNM 118
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 10/115 (8%)
Query: 202 QNRRFKC--PCCERIFTSETRMRNHIDMKHADENLFKC--KKCLKVFS--DEIKFHLHGR 255
+ R F C P C + + + ++ H KH E ++C K C + FS D++K H
Sbjct: 3 EKRPFMCAYPGCNKRYFKLSHLQMH-SRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61
Query: 256 AHAKFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNY--CYDSFETKSTLVDH 308
K ++C C+++F+ D ++ H R H E + C + C F LV H
Sbjct: 62 TGVKPFQCKTCQRKFSRSDHLKTHTRT-HTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 9/117 (7%)
Query: 89 SIQERKFKC--EMCPKSFDHKSNIRRHMAATHDLQKKYKC--KLCARMYRYKWNLKAHLK 144
+ ++R F C C K + S+++ H + H +K Y+C K C R + LK H +
Sbjct: 1 ASEKRPFMCAYPGCNKRYFKLSHLQMH-SRKHTGEKPYQCDFKDCERRFSRSDQLKRHQR 59
Query: 145 MHKGPKIFTCAQCDKAFSLKSNLSKHVRHHM-ENVKQCKI--CLEIF-EDDEVLEEH 197
H G K F C C + FS +L H R H E C+ C + F DE++ H
Sbjct: 60 RHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHH 116
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 10/75 (13%)
Query: 332 RNHECTSCFTCPF--CQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNED 389
R H + C F C+R++ L++H + P +C+ CQR F D
Sbjct: 29 RKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPF--------QCKTCQRKFSRSD 80
Query: 390 KLTAHELSHTMEKTF 404
L H +HT EK F
Sbjct: 81 HLKTHTRTHTGEKPF 95
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 35/92 (38%), Gaps = 16/92 (17%)
Query: 315 PYMCN--HCFLMFPDEKNL----RNHECTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPT 368
PY C+ C F L R H F C CQRK+ HL+ H + P
Sbjct: 36 PYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPF 95
Query: 369 TTVLKTLQKCRY--CQRMFRNEDKLTAHELSH 398
+ CR+ CQ+ F D+L H H
Sbjct: 96 S--------CRWPSCQKKFARSDELVRHHNMH 119
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 74/174 (42%), Gaps = 24/174 (13%)
Query: 211 CERIFTSETRMRNHIDMKHADENLFKCKK--CLKVFSDEIKFHLHGRAHA--KFYRCSE- 265
C + +++ H+ KH E F CK+ C K F+ H H K + C
Sbjct: 20 CGAAYNKNWKLQAHL-CKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSD 78
Query: 266 -CEKRFATEDIMRQHFRNYHN-KEDAYVCNY--CYDSFETKSTLVDHFFHHGN--PYMCN 319
C+ RF T+ M++HF +HN K YVC++ C +F+ + L H F H PY C
Sbjct: 79 GCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECP 138
Query: 320 H--CFLMFPDEKNLRNHE-------CTSCFTCPFCQRKYKIEKHLEKHIESCIQ 364
H C F L+ HE C +C F + + + KH+ C Q
Sbjct: 139 HEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTL---YLKHVAECHQ 189
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 69/176 (39%), Gaps = 45/176 (25%)
Query: 120 LQKKYKCKL--CARMYRYKWNLKAHLKMHKGPKIFTCAQ--CDKAFSLKSNLSKHVRHHM 175
+ K+Y C C Y W L+AHL H G K F C + C+K F+ +L++H H
Sbjct: 9 VYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHT 68
Query: 176 ENVKQCKICLEIFEDDEVLEEHVKSHQNRRFKCPC--CERIFTSETRMRNHIDMKHADEN 233
+ F C C+ FT++ M+ H + H N
Sbjct: 69 --------------------------GEKNFTCDSDGCDLRFTTKANMKKHFNRFH---N 99
Query: 234 LFKC------KKCLKVFSDEIKFHLHGRAHAK--FYRCS--ECEKRFATEDIMRQH 279
+ C + C K F + +H +H + Y C C+KRF+ +++H
Sbjct: 100 IKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRH 155
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Query: 92 ERKFKCE--MCPKSFDHKSNIRRHMAATHDLQK-KYKCKL--CARMYRYKWNLKAHLKMH 146
E+ F C+ C F K+N+++H H+++ Y C C + ++ LK H H
Sbjct: 70 EKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSH 129
Query: 147 KGPKIFTCAQ--CDKAFSLKSNLSKHVRHH 174
+ C CDK FSL S L +H + H
Sbjct: 130 TQQLPYECPHEGCDKRFSLPSRLKRHEKVH 159
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 27/57 (47%)
Query: 121 QKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHMEN 177
+K Y C C + + L H ++H G K + C +C KAFS S L H R H
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSG 68
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 259 KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDH 308
K Y C EC K F+ I+ QH R H E Y C C +F S L++H
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQR-VHTGEKPYKCLECGKAFSQNSGLINH 61
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMH-KGP 149
E+ + C C K+F S + +H H +K YKC C + + L H ++H GP
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQR-VHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGP 69
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 150 KIFTCAQCDKAFSLKSNLSKHVR-HHMENVKQCKICLEIFEDDEVLEEHVKSH 201
K + C +C KAFS S L +H R H E +C C + F + L H + H
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 287 EDAYVCNYCYDSFETKSTLVDH-FFHHGN-PYMCNHCFLMFPDEKNLRNHE 335
E Y C C +F S LV H H G PY C C F L NH+
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQ 62
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 232 ENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMRQHFR 281
E + C +C K FS H R H K Y+C EC K F+ + H R
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQR 63
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 100 CPKSFDHKSNIRRHMAATHDLQKKYKCKL--CARMYRYKWNLKAHLKMHKGPKIFTCAQC 157
C K++ S+++ H+ TH +K Y C C + L H + H G + F C +C
Sbjct: 14 CGKTYTKSSHLKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKC 72
Query: 158 DKAFSLKSNLSKHVRHHM 175
D+AFS +L+ H++ H
Sbjct: 73 DRAFSRSDHLALHMKRHF 90
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 129 CARMYRYKWNLKAHLKMHKGPKIFTCA--QCDKAFSLKSNLSKHVRHHMENVK-QCKICL 185
C + Y +LKAHL+ H G K + C C F+ L++H R H + QC+ C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 186 EIFEDDEVLEEHVKSH 201
F + L H+K H
Sbjct: 74 RAFSRSDHLALHMKRH 89
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 155 AQCDKAFSLKSNLSKHVRHHM-ENVKQCKI--CLEIFEDDEVLEEHVKSHQNRR-FKCPC 210
A C K ++ S+L H+R H E C C F + L H + H R F+C
Sbjct: 12 AGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQK 71
Query: 211 CERIFTSETRMRNHI 225
C+R F+ + H+
Sbjct: 72 CDRAFSRSDHLALHM 86
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 100 CPKSFDHKSNIRRHMAATHDLQKKYKCKL--CARMYRYKWNLKAHLKMHKGPKIFTCAQC 157
C K++ S+++ H+ TH +K Y C C + L H + H G + F C +C
Sbjct: 13 CGKTYTKSSHLKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKC 71
Query: 158 DKAFSLKSNLSKHVRHHM 175
D+AFS +L+ H++ H
Sbjct: 72 DRAFSRSDHLALHMKRHF 89
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 129 CARMYRYKWNLKAHLKMHKGPKIFTCA--QCDKAFSLKSNLSKHVRHHMENVK-QCKICL 185
C + Y +LKAHL+ H G K + C C F+ L++H R H + QC+ C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 186 EIFEDDEVLEEHVKSH 201
F + L H+K H
Sbjct: 73 RAFSRSDHLALHMKRH 88
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 155 AQCDKAFSLKSNLSKHVRHHM-ENVKQCKI--CLEIFEDDEVLEEHVKSHQNRR-FKCPC 210
A C K ++ S+L H+R H E C C F + L H + H R F+C
Sbjct: 11 AGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQK 70
Query: 211 CERIFTSETRMRNHI 225
C+R F+ + H+
Sbjct: 71 CDRAFSRSDHLALHM 85
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 254 GRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKE---DAYVCNYCYDSFETKSTLVDH 308
GR H K Y CS C+K F + ++ HF+ YH+ A+VC+ C +F ++T+ H
Sbjct: 7 GRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKI----FTCAQCDKAFSLKSNLSKHV 171
TH +K Y C C + +R K L H K + P F C++C K F+ ++ +++H
Sbjct: 9 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 8/87 (9%)
Query: 98 EMCP---KSFDHKSNIRRHMAATHDLQKKYKCKL--CARMYRYKWNLKAHLKMHKGPKIF 152
E CP KSF K + H+ H +K + C C +++ NLK H + H G K F
Sbjct: 63 EECPREGKSFKAKYKLVNHIRV-HTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPF 121
Query: 153 TC--AQCDKAFSLKSNLSKHVRHHMEN 177
C CD+ F+ S+ KH+ H +
Sbjct: 122 KCEFEGCDRRFANSSDRKKHMHVHTSD 148
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 122 KKYKCKL--CARMYRYKWNLKAHLKMHKGPKIFTCAQ--CDKAFSLKSNLSKHVRHH 174
K+Y C C Y W L+AHL H G K F C + C+K F+ +L++H H
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTH 58
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 100 CPKSFDHKSNIRRHMAATHDLQKKYKCK--LCARMYRYKWNLKAHLKMHKGPKIFTCAQ- 156
C +++ ++ H++ H +K + CK C + + +L H H G K FTC
Sbjct: 11 CGAAYNKNWKLQAHLSK-HTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSD 69
Query: 157 -CDKAFSLKSNLSKH 170
CD F+ K+N+ KH
Sbjct: 70 GCDLRFTTKANMKKH 84
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query: 211 CERIFTSETRMRNHIDMKHADENLFKCKK--CLKVFSDEIKFHLHGRAHA--KFYRCSE- 265
C + +++ H+ KH E F CK+ C K F+ H H K + C
Sbjct: 11 CGAAYNKNWKLQAHLS-KHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSD 69
Query: 266 -CEKRFATEDIMRQHFRNYHN 285
C+ RF T+ M++HF +HN
Sbjct: 70 GCDLRFTTKANMKKHFNRFHN 90
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 125 KCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHV-RHH 174
+C C + +R + L HL+ H G K + C C+ A + K++L H+ RHH
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 177 NVKQCKICLEIFEDDEVLEEHVKSHQNRR-FKCPCCERIFTSETRMRNHIDMKH 229
+ ++C C + F + L H+++H + +KC CE +T +R H++ H
Sbjct: 3 SSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
Length = 66
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 114 MAATHDLQKKYKCKLCARMYRYKWNLKAH-LKMHK-GPKIFTCAQCDKAFSLKSNLSKHV 171
M T + + Y+CK+C+R+Y + N H + HK K++ C C K F+ K N++ HV
Sbjct: 1 MEFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV 60
Query: 172 R 172
+
Sbjct: 61 K 61
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQ-KKYKCKLCARMYRYKWNLKAHLKM 145
E ++C++C + + H SN RH +H K Y C C + + K N+ AH+K+
Sbjct: 8 EHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 150 KIFTCAQCDKAFSLKSNLSKHVRHHME-NVKQCKICLEIFEDDEVLEEHVKSHQNR 204
+ F C C K + S LS+H R H+ + C C + F D + H+K HQN+
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNK 58
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 29/54 (53%)
Query: 121 QKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
++ + C C + YR L H + H G + +C +C K F +S +++H++ H
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHK 147
ER F C C K++ S + RH A H + C C + +R + + HLK+H+
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRA-HLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 231 DENLFKCKKCLKVFSDEIKFHLHGRAHAKFY--RCSECEKRFATEDIMRQHFRNYHNK 286
E F C C K + D H RAH + C EC K F + + +H + + NK
Sbjct: 1 SERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNK 58
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 122 KKYKCKL--CARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
+ Y C + C R + L H+++H G K F C C + FS +L+ H+R H
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 156 QCDKAFSLKSNLSKHVR-HHMENVKQCKICLEIFEDDEVLEEHVKSH 201
CD+ FS L++H+R H + QC+IC+ F + L H+++H
Sbjct: 26 SCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 93 RKFKC--EMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMH 146
R + C E C + F + RH+ H QK ++C++C R + +L H++ H
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 204 RRFKCPC--CERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA 258
R + CP C+R F+ + HI + H + F+C+ C++ FS H R H
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 16/65 (24%)
Query: 340 FTCPF--CQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQK---CRYCQRMFRNEDKLTAH 394
+ CP C R++ L +HI + T QK CR C R F D LT H
Sbjct: 20 YACPVESCDRRFSRSDELTRHIR-----------IHTGQKPFQCRICMRNFSRSDHLTTH 68
Query: 395 ELSHT 399
+HT
Sbjct: 69 IRTHT 73
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 35.4 bits (80), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 122 KKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKH 170
K ++C++C R + +L H++ H G K F C C + F+ +H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 180 QCKICLEIFEDDEVLEEHVKSHQNRR-FKCPCCERIFTSETRMRNHIDMKH 229
QC+IC+ F + L H+++H + F C C R F + H D++H
Sbjct: 5 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH 55
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 377 KCRYCQRMFRNEDKLTAHELSHTMEKTF 404
+CR C R F D LT H +HT EK F
Sbjct: 5 QCRICMRNFSRSDHLTTHIRTHTGEKPF 32
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 35.4 bits (80), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 129 CARMYRYKWNLKAHLKMHKGPKIFTCA--QCDKAFSLKSNLSKHVRHH 174
C + Y +LKAH + H G K F+C+ C++ F+ LS+H R H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 10/72 (13%)
Query: 327 DEKNLRNHECTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFR 386
D +R+H C+ P C + Y HL+ H + P + K C+R F
Sbjct: 11 DSSRIRSHICSH----PGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKG------CERRFA 60
Query: 387 NEDKLTAHELSH 398
D+L+ H +H
Sbjct: 61 RSDELSRHRRTH 72
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 34.7 bits (78), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 261 YRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHF 309
Y C EC R ++++H R H Y C YC SF+TK L H
Sbjct: 2 YICEECGIRXKKPSMLKKHIRT-HTDVRPYHCTYCNFSFKTKGNLTKHM 49
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 123 KYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVR 172
KY C+ C + LK H++ H + + C C+ +F K NL+KH++
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 27/48 (56%)
Query: 124 YKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHV 171
+ C++C R + + +LK H + H K + C C++AF+ + L +H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHA 50
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 95 FKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHL-KMHKG 148
F CE+C ++F + +++RH +H +K Y C LC R + + L H K+H G
Sbjct: 3 FVCEVCTRAFARQEHLKRHY-RSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 181 CKICLEIFEDDEVLEEHVKSHQNRR-FKCPCCERIFTSETRMRNHIDMKHAD 231
C++C F E L+ H +SH N + + C C R FT + H H+
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 152 FTCAQCDKAFSLKSNLSKHVRHHM-ENVKQCKICLEIFEDDEVLEEHVK 199
F C C +AF+ + +L +H R H E C +C F ++L H +
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQ 51
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 235 FKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHN 285
F C+ C + F+ + H R+H K Y C C + F D++ +H + H+
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS 55
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHL--KMHKGPKIFTCAQCDKAFSLKSNLSKHVR 172
TH +K Y+C +C + +K H+ K + F C CD + KS+L H+R
Sbjct: 9 THSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLR 66
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 20/27 (74%)
Query: 150 KIFTCAQCDKAFSLKSNLSKHVRHHME 176
K + CA+C KAF+++SNL KH + H +
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQKIHTK 37
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 121 QKKYKCKLCARMYRYKWNLKAHLKMHKG 148
+K YKC+ C + Y K+NL H K+H G
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTG 37
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 31.2 bits (69), Expect = 1.1, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 148 GPKIFTCAQCDKAFSLKSNLSKHVRHH 174
G K + C +C KAF LKS L H R H
Sbjct: 7 GQKPYVCNECGKAFGLKSQLIIHERIH 33
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 150 KIFTCAQCDKAFSLKSNLSKHVRHHM 175
K + C +C KAF+ K+NL++H R H
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHT 36
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 121 QKKYKCKLCARMYRYKWNLKAHLKMHKGPK 150
+K +KCK C + +R +L +HL++H G K
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEK 39
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 30.8 bits (68), Expect = 1.3, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 15/27 (55%)
Query: 148 GPKIFTCAQCDKAFSLKSNLSKHVRHH 174
G K + C C KAF LKS L H R H
Sbjct: 7 GEKPYECTDCGKAFGLKSQLIIHQRTH 33
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 121 QKKYKCKLCARMYRYKWNLKAHLKMHKGPK 150
+K YKC +C + +RY +L H ++H G K
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEK 39
>pdb|1OG6|A Chain A, Ydhf, An Aldo-keto Reductase From E.coli Complexed With
Nadph
pdb|1OG6|B Chain B, Ydhf, An Aldo-keto Reductase From E.coli Complexed With
Nadph
pdb|1OG6|C Chain C, Ydhf, An Aldo-keto Reductase From E.coli Complexed With
Nadph
Length = 298
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 151 IFTCAQCDKAFSLKSNLSKHVRHHMENVKQCKIC 184
I+ QC+ AF L+ H+R ME V +C I
Sbjct: 54 IYGGYQCEAAFGEALKLAPHLRERMEIVSKCGIA 87
>pdb|2WBT|A Chain A, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
pdb|2WBT|B Chain B, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
Length = 129
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 181 CKICLEIFEDDEVLEEHVKSHQNRRFKCPCCERIFTSETRMRNHIDMKH 229
C +CL F L++H++ ++ + CP C++ FTS +H+ KH
Sbjct: 77 CPLCLMPFSSSVSLKQHIRYTEHTKV-CPVCKKEFTSTDSALDHVCKKH 124
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 150 KIFTCAQCDKAFSLKSNLSKHVRHHM 175
K F C++C KAF+ KSNL H R H
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHT 36
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 30.8 bits (68), Expect = 1.7, Method: Composition-based stats.
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 150 KIFTCAQCDKAFSLKSNLSKHVRHH 174
K + C+QC K FSLKS L H R H
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSH 35
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 30.4 bits (67), Expect = 2.0, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 121 QKKYKCKLCARMYRYKWNLKAHLKMHKG 148
+K Y C++C +R+ LK+HL++H G
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTG 36
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 30.4 bits (67), Expect = 2.2, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 181 CKICLEIFEDDEVLEEHVKS-HQNRRFKCPCCERIFTSETRMRNHIDMKHADEN 233
C +C E F E H++ H + F C C F S + HI+ H EN
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSEN 84
Score = 28.9 bits (63), Expect = 5.1, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 126 CKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVR--HHMEN 177
C +C + K + HL++ ++F C C F L++H+ H EN
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSEN 84
Score = 28.9 bits (63), Expect = 6.4, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 256 AHAKFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDH 308
A A+ + C C + FA++ +H R H + + C YC +F + L H
Sbjct: 24 ASAECHLCPVCGESFASKGAQERHLRLLHAAQ-VFPCKYCPATFYSSPGLTRH 75
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 121 QKKYKCKLCARMYRYKWNLKAHLKMHKGPK 150
QK ++C C + +R K NL H ++H G K
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
>pdb|7ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 259 KFYRCSECEKRFATEDIMRQHFRNYHNKE 287
K Y+C CEKRFA ++ H + H+KE
Sbjct: 1 KTYQCQYCEKRFADSSNLKTHIKTKHSKE 29
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.0 bits (66), Expect = 2.7, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 150 KIFTCAQCDKAFSLKSNLSKHVRHH 174
K F CA+C K+FS+ S L+ H R H
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIH 35
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 120 LQKKYKCKLCARMYRYKWNLKAHLKMHKGPK 150
++K YKC+ C + Y + NL H ++H G K
Sbjct: 9 VEKPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
>pdb|2ELS|A Chain A, Solution Structure Of The 2nd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 149 PKIFTCAQCDKAFSLKSNLSKHVRHH 174
KIFTC C+K F K +L H+R H
Sbjct: 7 GKIFTCEYCNKVFKFKHSLQAHLRIH 32
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 23/36 (63%)
Query: 115 AATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPK 150
++ K + C+ C +++++K +L+AHL++H K
Sbjct: 1 GSSGSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 100 CPKSFDHKSNIRRHMAATHDLQKKYKCK--LCARMYRYKWNLKAHLKMHKGPKIFTC 154
C + F ++ + H H QK + C C + + +K +LK H+K+H + + C
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYIC 71
>pdb|2ELQ|A Chain A, Solution Structure Of The 14th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 115 AATHDLQKKYKCKLCARMYRYKWNLKAHLKMH 146
++ K +KC LC R K NLKAH+ H
Sbjct: 1 GSSGSSGKPFKCSLCEYATRSKSNLKAHMNRH 32
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 29.3 bits (64), Expect = 4.4, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 148 GPKIFTCAQCDKAFSLKSNLSKHVRHH 174
G K + C++C KAF KS L H+R H
Sbjct: 7 GVKPYGCSECGKAFRSKSYLIIHMRTH 33
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.3 bits (64), Expect = 4.6, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 121 QKKYKCKLCARMYRYKWNLKAHLKMHKGPK 150
+K YKC C + +R + NL H +H G K
Sbjct: 10 EKPYKCYECGKAFRTRSNLTTHQVIHTGEK 39
Score = 28.5 bits (62), Expect = 7.8, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 377 KCRYCQRMFRNEDKLTAHELSHTMEK 402
KC C + FR LT H++ HT EK
Sbjct: 14 KCYECGKAFRTRSNLTTHQVIHTGEK 39
>pdb|2EPY|A Chain A, Solution Structure Of The 10th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 42
Score = 28.9 bits (63), Expect = 5.1, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 15/27 (55%)
Query: 148 GPKIFTCAQCDKAFSLKSNLSKHVRHH 174
G K+ C C KAFS KS L H R H
Sbjct: 7 GEKLHECNNCGKAFSFKSQLIIHQRIH 33
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 28.9 bits (63), Expect = 5.5, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 150 KIFTCAQCDKAFSLKSNLSKHVRHH 174
K + C QC KAFS K +L H+R H
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVH 34
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 377 KCRYCQRMFRNEDKLTAHELSHTMEK 402
KC C + FR LT H++ HT EK
Sbjct: 14 KCNECGKAFRAHSNLTTHQVIHTGEK 39
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 121 QKKYKCKLCARMYRYKWNLKAHLKMHKGPK 150
+K YKC C + +R NL H +H G K
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEK 39
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.9 bits (63), Expect = 5.8, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 148 GPKIFTCAQCDKAFSLKSNLSKHVRHHME 176
G K F C+ C+KAFS KS L H + H E
Sbjct: 7 GEKPFGCSCCEKAFSSKSYLLVHQQTHAE 35
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 150 KIFTCAQCDKAFSLKSNLSKHVRHH 174
K + C +C KAF+ KSNL H R H
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQRTH 35
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 28.5 bits (62), Expect = 7.4, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 148 GPKIFTCAQCDKAFSLKSNLSKH 170
G K + C+ C KAF+ KS L H
Sbjct: 7 GEKPYVCSDCGKAFTFKSQLIVH 29
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 121 QKKYKCKLCARMYRYKWNLKAHLKMHKGPK 150
+K Y+CK+C++ + K +L H K H G K
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEK 39
>pdb|1P7A|A Chain A, Solution Stucture Of The Third Zinc Finger From Bklf
Length = 37
Score = 28.5 bits (62), Expect = 8.3, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 148 GPKIFTCAQCDKAFSLKSNLSKHVRHHM 175
G K F C CD++FS +L+ H + HM
Sbjct: 8 GIKPFQCPDCDRSFSRSDHLALHRKRHM 35
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 150 KIFTCAQCDKAFSLKSNLSKH 170
K + C QC KAFS++S+L+ H
Sbjct: 11 KPYECNQCGKAFSVRSSLTTH 31
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.1 bits (61), Expect = 8.7, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 148 GPKIFTCAQCDKAFSLKSNLSKH 170
G K ++C +C KAF+ KS L H
Sbjct: 7 GEKPYSCNECGKAFTFKSQLIVH 29
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 28.1 bits (61), Expect = 8.9, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 121 QKKYKCKLCARMYRYKWNLKAHLKMHKG 148
Q+ Y+C+ C + +R K +L H ++H G
Sbjct: 8 QRVYECQECGKSFRQKGSLTLHERIHTG 35
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 28.1 bits (61), Expect = 9.2, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 150 KIFTCAQCDKAFSLKSNLSKHVRHH 174
K + C++C KAFS KS L H+R H
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTH 35
>pdb|2LVU|A Chain A, Solution Structure Of Miz-1 Zinc Finger 10
Length = 26
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 150 KIFTCAQCDKAFSLKSNLSKHVRHH 174
K + C +C K F S L+ H+RHH
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 124 YKCKLCARMYRYKWNLKAHLKMHKGPK 150
KC+ C + + NLK HL++H G K
Sbjct: 3 LKCRECGKQFTTSGNLKRHLRIHSGEK 29
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.134 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,760,944
Number of Sequences: 62578
Number of extensions: 512111
Number of successful extensions: 3210
Number of sequences better than 100.0: 170
Number of HSP's better than 100.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1924
Number of HSP's gapped (non-prelim): 1043
length of query: 420
length of database: 14,973,337
effective HSP length: 101
effective length of query: 319
effective length of database: 8,652,959
effective search space: 2760293921
effective search space used: 2760293921
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (25.0 bits)