RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3231
(420 letters)
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 80.6 bits (200), Expect = 5e-18
Identities = 59/209 (28%), Positives = 80/209 (38%), Gaps = 33/209 (15%)
Query: 103 SFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFS 162
S S+ A +K Y C C + + +L H + H G K + C +C K+FS
Sbjct: 2 SEFGSSSSVAQAA-LEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFS 60
Query: 163 LKSNLSKHVRHHM-ENVKQCKICLEIFEDDEVLEEHVKSHQNRRFKCPCCERIFTSETRM 221
K +L++H R H E +C C + F L H +R
Sbjct: 61 DKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAH--------------QRT------- 99
Query: 222 RNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMRQH 279
H E + C +C K FS H R H K Y+C EC K F+ ED + H
Sbjct: 100 -------HTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTH 152
Query: 280 FRNYHNKEDAYVCNYCYDSFETKSTLVDH 308
R H E Y C C SF + L H
Sbjct: 153 QR-THTGEKPYKCPECGKSFSRRDALNVH 180
Score = 77.5 bits (192), Expect = 6e-17
Identities = 60/195 (30%), Positives = 84/195 (43%), Gaps = 36/195 (18%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKI 151
E+ + C C KSF ++ H TH +K YKC C + + K +L H + H G K
Sbjct: 19 EKPYACPECGKSFSRSDHLAEHQ-RTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKP 77
Query: 152 FTCAQCDKAFSLKSNLSKHVRHHM-ENVKQCKICLEIFEDDEVLEEHVKSHQNRRFKCPC 210
+ C +C K+FS ++NL H R H E + + CP
Sbjct: 78 YKCPECGKSFSQRANLRAHQRTHTGE---------------------------KPYACPE 110
Query: 211 CERIFTSETRMRNH--IDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSEC 266
C + F+ +R H H E +KC +C K FS E H H R H K Y+C EC
Sbjct: 111 CGKSFSQLAHLRAHQRT---HTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPEC 167
Query: 267 EKRFATEDIMRQHFR 281
K F+ D + H R
Sbjct: 168 GKSFSRRDALNVHQR 182
Score = 66.3 bits (163), Expect = 5e-13
Identities = 51/167 (30%), Positives = 75/167 (44%), Gaps = 30/167 (17%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKI 151
E+ +KC C KSF K ++ RH TH +K YKC C + + + NL+AH + H G K
Sbjct: 47 EKPYKCPECGKSFSDKKDLTRHQ-RTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKP 105
Query: 152 FTCAQCDKAFSLKSNLSKHVRHHM-ENVKQCKICLEIFEDDEVLEEHVKSHQNRRFKCPC 210
+ C +C K+FS ++L H R H E +C C + F ++ L H
Sbjct: 106 YACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTH------------- 152
Query: 211 CERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAH 257
+R H E +KC +C K FS ++H R H
Sbjct: 153 -QRT--------------HTGEKPYKCPECGKSFSRRDALNVHQRTH 184
Score = 51.3 bits (124), Expect = 7e-08
Identities = 53/197 (26%), Positives = 70/197 (35%), Gaps = 47/197 (23%)
Query: 229 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNK 286
E + C +C K FS H R H K Y+C EC K F+ + + +H R H
Sbjct: 16 EPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRT-HTG 74
Query: 287 EDAYVCNYCYDSFETKSTLVDHF-FHHG-NPYMCNHCFLMFPDEKNLRNH---------- 334
E Y C C SF ++ L H H G PY C C F +LR H
Sbjct: 75 EKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPY 134
Query: 335 ECTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQ---------KCRYCQRMF 385
+C C F + +L H Q KC C + F
Sbjct: 135 KCPECGKS-FSRE-----DNLHTH-----------------QRTHTGEKPYKCPECGKSF 171
Query: 386 RNEDKLTAHELSHTMEK 402
D L H+ +HT +K
Sbjct: 172 SRRDALNVHQRTHTGKK 188
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 69.8 bits (172), Expect = 4e-15
Identities = 29/83 (34%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKI 151
KCE+C K F K ++ HM H K YKCK C +L HL++H +
Sbjct: 6 SGPHKCEVCGKCFSRKDKLKTHM-RCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERP 64
Query: 152 FTCAQCDKAFSLKSNLSKHVRHH 174
F C C A S L+ H+R H
Sbjct: 65 FKCQICPYASRNSSQLTVHLRSH 87
Score = 53.2 bits (129), Expect = 3e-09
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHM- 175
+ +KC++C + + K LK H++ H G K + C CD A + S+L+KH+R H
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSD 61
Query: 176 ENVKQCKICLEIFEDDEVLEEHVKSH 201
E +C+IC + L H++SH
Sbjct: 62 ERPFKCQICPYASRNSSQLTVHLRSH 87
Score = 45.9 bits (110), Expect = 1e-06
Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 3/82 (3%)
Query: 229 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNK 286
KC+ C K FS + K H R H K Y+C C+ A + +H R H+
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLR-IHSD 61
Query: 287 EDAYVCNYCYDSFETKSTLVDH 308
E + C C + S L H
Sbjct: 62 ERPFKCQICPYASRNSSQLTVH 83
Score = 44.7 bits (107), Expect = 3e-06
Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKI 151
+ +KC+ C + S++ +H+ H ++ +KC++C R L HL+ H G
Sbjct: 34 VKPYKCKTCDYAAADSSSLNKHLR-IHSDERPFKCQICPYASRNSSQLTVHLRSHTGDSG 92
Query: 152 FTCA 155
+
Sbjct: 93 PSSG 96
Score = 38.6 bits (91), Expect = 4e-04
Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
Query: 261 YRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHF-FHHG-NPYMC 318
++C C K F+ +D ++ H R H Y C C + S+L H H P+ C
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRC-HTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 319 NHCFLMFPDEKNLRNH 334
C + L H
Sbjct: 68 QICPYASRNSSQLTVH 83
Score = 27.8 bits (63), Expect = 2.4
Identities = 29/121 (23%), Positives = 36/121 (29%), Gaps = 34/121 (28%)
Query: 284 HNKEDAYVCNYCYDSFETKSTLVDHF-FHHG-NPYMCNHCFLMFPDEKNLRNHECTSCFT 341
+ C C F K L H H G PY C C D +L H
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKH------- 55
Query: 342 CPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSHTME 401
R + E+ P KC+ C RN +LT H SHT +
Sbjct: 56 ----LRIHSDER-------------P--------FKCQICPYASRNSSQLTVHLRSHTGD 90
Query: 402 K 402
Sbjct: 91 S 91
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 66.7 bits (164), Expect = 4e-14
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 92 ERKFKC--EMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGP 149
ER + C E C + F ++ RH+ H QK ++C++C R + +L H++ H G
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 150 KIFTCAQCDKAFSLKSNLSKHVRHH 174
K F C C + F+ +H + H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 42.1 bits (100), Expect = 2e-05
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPK 150
++ F+C +C ++F ++ H+ TH +K + C +C R + K H K+H K
Sbjct: 32 QKPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 38.6 bits (91), Expect = 3e-04
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 206 FKCPC--CERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFY 261
+ CP C+R F+ + HI H + F+C+ C++ FS H R H K +
Sbjct: 5 YACPVESCDRRFSQSGSLTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 262 RCSECEKRFATEDIMRQHFR 281
C C ++FA D ++H +
Sbjct: 64 ACDICGRKFARSDERKRHTK 83
Score = 37.8 bits (89), Expect = 6e-04
Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 5/78 (6%)
Query: 235 FKC--KKCLKVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAY 290
+ C + C + FS H R H K ++C C + F+ D + H R H E +
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPF 63
Query: 291 VCNYCYDSFETKSTLVDH 308
C+ C F H
Sbjct: 64 ACDICGRKFARSDERKRH 81
Score = 34.7 bits (81), Expect = 0.006
Identities = 25/138 (18%), Positives = 39/138 (28%), Gaps = 57/138 (41%)
Query: 122 KKYKCKL--CARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENVK 179
+ Y C + C R + +L H+++H G K F C C + FS +L
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHL------------ 50
Query: 180 QCKICLEIFEDDEVLEEHVKSHQNRRFKCPCCERIFTSETRMRNHIDMKHADENLFKCKK 239
+H R H E F C
Sbjct: 51 -------------------TTHI----------RT--------------HTGEKPFACDI 67
Query: 240 CLKVFSDEIKFHLHGRAH 257
C + F+ + H + H
Sbjct: 68 CGRKFARSDERKRHTKIH 85
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 67.5 bits (166), Expect = 5e-14
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHM--AATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGP 149
E+ F+C C K + K N+ H + ++ + C +C +R + L+ H+ H G
Sbjct: 33 EKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGE 92
Query: 150 KIFTCAQCDKAFSLKSNLSKH 170
+ C+ C + F K +L H
Sbjct: 93 MPYKCSSCSQQFMQKKDLQSH 113
Score = 66.4 bits (163), Expect = 1e-13
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAH---LKMHKG 148
+C C K F K ++ H H +K ++C C + Y K NL H M++
Sbjct: 5 SSGVECPTCHKKFLSKYYLKVHN-RKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRS 63
Query: 149 PKIFTCAQCDKAFSLKSNLSKHVRHH 174
++FTC+ C + F + L H+ H
Sbjct: 64 EQVFTCSVCQETFRRRMELRLHMVSH 89
Score = 55.6 bits (135), Expect = 7e-10
Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 5/108 (4%)
Query: 122 KKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHM----EN 177
+C C + + K+ LK H + H G K F C +C K + K NL +H + E
Sbjct: 6 SGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQ 65
Query: 178 VKQCKICLEIFEDDEVLEEHVKSHQNRR-FKCPCCERIFTSETRMRNH 224
V C +C E F L H+ SH +KC C + F + +++H
Sbjct: 66 VFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSH 113
Score = 54.0 bits (131), Expect = 2e-09
Identities = 30/139 (21%), Positives = 49/139 (35%), Gaps = 32/139 (23%)
Query: 146 HKGPKIFTCAQCDKAFSLKSNLSKHVRHHM-ENVKQCKICLEIFEDDEVLEEHVKSHQNR 204
G C C K F K L H R H E +
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGE---------------------------K 34
Query: 205 RFKCPCCERIFTSETRMRNH--IDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA--KF 260
F+CP C + + + + H + + E +F C C + F ++ LH +H
Sbjct: 35 PFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMP 94
Query: 261 YRCSECEKRFATEDIMRQH 279
Y+CS C ++F + ++ H
Sbjct: 95 YKCSSCSQQFMQKKDLQSH 113
Score = 49.8 bits (120), Expect = 7e-08
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 7/108 (6%)
Query: 206 FKCPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA-----KF 260
+CP C + F S+ ++ H + KH E F+C KC K + + H + +
Sbjct: 8 VECPTCHKKFLSKYYLKVH-NRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQV 66
Query: 261 YRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDH 308
+ CS C++ F +R H + H E Y C+ C F K L H
Sbjct: 67 FTCSVCQETFRRRMELRLHMVS-HTGEMPYKCSSCSQQFMQKKDLQSH 113
Score = 42.1 bits (100), Expect = 4e-05
Identities = 27/115 (23%), Positives = 43/115 (37%), Gaps = 22/115 (19%)
Query: 259 KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDH----FFHHG- 313
C C K+F ++ ++ H R H E + C C + K L++H +
Sbjct: 6 SGVECPTCHKKFLSKYYLKVHNRK-HTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSE 64
Query: 314 NPYMCNHCFLMFPDEKNLRNH----------ECTSCFTCPFCQRKYKIEKHLEKH 358
+ C+ C F LR H +C+SC F Q+ K L+ H
Sbjct: 65 QVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQ-FMQK-----KDLQSH 113
Score = 32.1 bits (74), Expect = 0.091
Identities = 26/124 (20%), Positives = 39/124 (31%), Gaps = 37/124 (29%)
Query: 284 HNKEDAYVCNYCYDSFETKSTLVDHF-FHHG-NPYMCNHCFLMFPDEKNLRNHECTSCFT 341
+ C C+ F +K L H H G P+ C C + ++NL H
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEH------- 54
Query: 342 CPFCQRKYKI---EKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSH 398
+ + + E+ C CQ FR +L H +SH
Sbjct: 55 ----EARNCMNRSEQVFT---------------------CSVCQETFRRRMELRLHMVSH 89
Query: 399 TMEK 402
T E
Sbjct: 90 TGEM 93
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 65.1 bits (160), Expect = 2e-13
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKI 151
+++F C+ C + F N+ H TH ++ Y C +C + +R + +L+ H +H K
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHER-THTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKP 73
Query: 152 FTCAQCDKAFSLKSNLSKHVRHHM 175
F C +C K F L+ H HM
Sbjct: 74 FKCQECGKGFCQSRTLAVHKTLHM 97
Score = 51.7 bits (125), Expect = 1e-08
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 107 KSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSN 166
S +K++ CK C R + +NL H + H + +TC C KAF + +
Sbjct: 2 SSGSSGGRL-PSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDH 60
Query: 167 LSKHVRHH 174
L H H
Sbjct: 61 LRDHRYIH 68
Score = 47.0 bits (113), Expect = 5e-07
Identities = 26/95 (27%), Positives = 36/95 (37%), Gaps = 5/95 (5%)
Query: 229 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNK 286
+ F CK C + F+ +H R H + Y C C K F +D +R H H+K
Sbjct: 12 SKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRY-IHSK 70
Query: 287 EDAYVCNYCYDSFETKSTLVDH-FFHHG-NPYMCN 319
E + C C F TL H H +
Sbjct: 71 EKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTAA 105
Score = 44.0 bits (105), Expect = 5e-06
Identities = 27/158 (17%), Positives = 38/158 (24%), Gaps = 58/158 (36%)
Query: 138 NLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENVKQCKICLEIFEDDEVLEEH 197
K K F C C + F+ NL
Sbjct: 4 GSSGGRLPSKTKKEFICKFCGRHFTKSYNLLI---------------------------- 35
Query: 198 VKSHQNRRFKCPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAH 257
H+ R H DE + C C K F + H H
Sbjct: 36 ---HE----------RT--------------HTDERPYTCDICHKAFRRQDHLRDHRYIH 68
Query: 258 A--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 293
+ K ++C EC K F + H H + +
Sbjct: 69 SKEKPFKCQECGKGFCQSRTLAVHKT-LHMQTSSPTAA 105
Score = 41.7 bits (99), Expect = 3e-05
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKI 151
ER + C++C K+F + ++R H H +K +KC+ C + + L H +H
Sbjct: 43 ERPYTCDICHKAFRRQDHLRDHRY-IHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSS 101
Query: 152 FTC 154
T
Sbjct: 102 PTA 104
Score = 26.2 bits (59), Expect = 9.7
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 284 HNKEDAYVCNYCYDSFETKSTLVDHF-FHHG-NPYMCNHCFLMFPDEKNLRNH 334
+ ++C +C F L+ H H PY C+ C F + +LR+H
Sbjct: 12 SKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDH 64
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 63.2 bits (155), Expect = 5e-13
Identities = 30/80 (37%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 95 FKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
F C++C KSF S + H+ H + Y C+ C + + K ++K H +H G K C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLL-IHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 155 AQCDKAFSLKSNLSKHVRHH 174
C KAFS SNL H R H
Sbjct: 61 QVCGKAFSQSSNLITHSRKH 80
Score = 41.6 bits (99), Expect = 2e-05
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Query: 235 FKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVC 292
F CK C K F H H+ + Y C C KRF + M++H H E + C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTF-IHTGEKPHKC 60
Query: 293 NYCYDSFETKSTLVDH 308
C +F S L+ H
Sbjct: 61 QVCGKAFSQSSNLITH 76
Score = 36.2 bits (85), Expect = 0.002
Identities = 27/134 (20%), Positives = 38/134 (28%), Gaps = 55/134 (41%)
Query: 124 YKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENVKQCKI 183
+ CK+C + ++ L HL +H + + C C K F KS++ K
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKK-------------- 47
Query: 184 CLEIFEDDEVLEEHVKSHQNRRFKCPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKV 243
H I H E KC+ C K
Sbjct: 48 -----------------HT----------FI--------------HTGEKPHKCQVCGKA 66
Query: 244 FSDEIKFHLHGRAH 257
FS H R H
Sbjct: 67 FSQSSNLITHSRKH 80
Score = 35.5 bits (83), Expect = 0.003
Identities = 24/76 (31%), Positives = 29/76 (38%), Gaps = 3/76 (3%)
Query: 261 YRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDH-FFHHG-NPYMC 318
+ C C K F + H H+ Y C YC F KS + H F H G P+ C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLL-IHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 319 NHCFLMFPDEKNLRNH 334
C F NL H
Sbjct: 61 QVCGKAFSQSSNLITH 76
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 63.3 bits (155), Expect = 7e-13
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKG--P 149
CE+C K F ++ RH +H +K Y C +C ++ K + H++ H G
Sbjct: 5 SSGVACEICGKIFRDVYHLNRHK-LSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVG 63
Query: 150 KIFTCAQCDKAFSLKSNLSKHVR 172
K + C C K FS +L+ H++
Sbjct: 64 KPYICQSCGKGFSRPDHLNGHIK 86
Score = 52.1 bits (126), Expect = 6e-09
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 122 KKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHM-ENVK- 179
C++C +++R ++L H H G K ++C C F K +S HVR H K
Sbjct: 6 SGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKP 65
Query: 180 -QCKICLEIFEDDEVLEEHVK 199
C+ C + F + L H+K
Sbjct: 66 YICQSCGKGFSRPDHLNGHIK 86
Score = 43.2 bits (103), Expect = 8e-06
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
Query: 229 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNK 286
+ + C+ C K+F D + H +H+ K Y C C RF +D M H R+ H+
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRS-HDG 60
Query: 287 EDA--YVCNYCYDSFETKSTLVDH 308
Y+C C F L H
Sbjct: 61 SVGKPYICQSCGKGFSRPDHLNGH 84
Score = 41.7 bits (99), Expect = 3e-05
Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 4/88 (4%)
Query: 146 HKGPKIFTCAQCDKAFSLKSNLSKHVRHHM-ENVKQCKICLEIFEDDEVLEEHVKSH--- 201
G C C K F +L++H H E C +C F+ + + HV+SH
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 61
Query: 202 QNRRFKCPCCERIFTSETRMRNHIDMKH 229
+ + C C + F+ + HI H
Sbjct: 62 VGKPYICQSCGKGFSRPDHLNGHIKQVH 89
Score = 39.8 bits (94), Expect = 1e-04
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 5/83 (6%)
Query: 206 FKCPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAH----AKFY 261
C C +IF + H + H+ E + C C F + + H R+H K Y
Sbjct: 8 VACEICGKIFRDVYHLNRHK-LSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPY 66
Query: 262 RCSECEKRFATEDIMRQHFRNYH 284
C C K F+ D + H + H
Sbjct: 67 ICQSCGKGFSRPDHLNGHIKQVH 89
Score = 38.6 bits (91), Expect = 3e-04
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHD--LQKKYKCKLCARMYRYKWNLKAHLKM-HKG 148
E+ + C +C F K + H+ +HD + K Y C+ C + + +L H+K H G
Sbjct: 33 EKPYSCPVCGLRFKRKDRMSYHVR-SHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSG 91
Query: 149 PK 150
P
Sbjct: 92 PS 93
Score = 28.6 bits (65), Expect = 1.2
Identities = 20/84 (23%), Positives = 26/84 (30%), Gaps = 8/84 (9%)
Query: 284 HNKEDAYVCNYCYDSFETKSTLVDHF-FHHG-NPYMCNHCFLMFPDEKNLRNH------E 335
+ C C F L H H G PY C C L F + + H
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 61
Query: 336 CTSCFTCPFCQRKYKIEKHLEKHI 359
+ C C + + HL HI
Sbjct: 62 VGKPYICQSCGKGFSRPDHLNGHI 85
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 63.7 bits (156), Expect = 1e-12
Identities = 31/89 (34%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Query: 90 IQERKFKCEM--CPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHK 147
++ R C C K F S +R+H+ TH + + C C + + LK H +H
Sbjct: 1 MEPRTIACPHKGCTKMFRDNSAMRKHL-HTHG-PRVHVCAECGKAFVESSKLKRHQLVHT 58
Query: 148 GPKIFTCA--QCDKAFSLKSNLSKHVRHH 174
G K F C C K FSL NL HVR H
Sbjct: 59 GEKPFQCTFEGCGKRFSLDFNLRTHVRIH 87
Score = 61.4 bits (150), Expect = 6e-12
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKL--CARMYRYKWNLKAHLKMHKGP 149
R C C K+F S ++RH H +K ++C C + + +NL+ H+++H G
Sbjct: 32 PRVHVCAECGKAFVESSKLKRHQ-LVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGD 90
Query: 150 KIFTCA--QCDKAFSLKSNLSKHVRHH 174
+ + C C+K F+ +NL H+ H
Sbjct: 91 RPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 35.6 bits (83), Expect = 0.007
Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 6/83 (7%)
Query: 231 DENLFKC--KKCLKVFSDEIKFHLHGRAHA-KFYRCSECEKRFATEDIMRQHFRNYHNKE 287
+ C K C K+F D H H + + C+EC K F +++H H E
Sbjct: 2 EPRTIACPHKGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLV-HTGE 60
Query: 288 DAYVCNY--CYDSFETKSTLVDH 308
+ C + C F L H
Sbjct: 61 KPFQCTFEGCGKRFSLDFNLRTH 83
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 61.4 bits (150), Expect = 3e-12
Identities = 16/80 (20%), Positives = 32/80 (40%), Gaps = 2/80 (2%)
Query: 95 FKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
F+C +C ++F ++ H+ TH +K + C +C R + K H +
Sbjct: 4 FQCRICMRNFSRSDHLTTHI-RTHTGEKPFACDICGRKFARSDERKRHRDIQ-HILPILE 61
Query: 155 AQCDKAFSLKSNLSKHVRHH 174
+ ++ S +L V
Sbjct: 62 DKVEELLSKNYHLENEVARL 81
Score = 53.3 bits (129), Expect = 2e-09
Identities = 18/78 (23%), Positives = 31/78 (39%)
Query: 122 KKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENVKQC 181
K ++C++C R + +L H++ H G K F C C + F+ +H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPILE 61
Query: 182 KICLEIFEDDEVLEEHVK 199
E+ + LE V
Sbjct: 62 DKVEELLSKNYHLENEVA 79
Score = 41.3 bits (98), Expect = 3e-05
Identities = 17/80 (21%), Positives = 30/80 (37%), Gaps = 4/80 (5%)
Query: 235 FKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVC 292
F+C+ C++ FS H R H K + C C ++FA D ++H H +
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH--ILPILE 61
Query: 293 NYCYDSFETKSTLVDHFFHH 312
+ + L +
Sbjct: 62 DKVEELLSKNYHLENEVARL 81
Score = 39.4 bits (93), Expect = 1e-04
Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 2/75 (2%)
Query: 261 YRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHF-FHHGNPYMCN 319
++C C + F+ D + H R H E + C+ C F H H P + +
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRHRDIQHILPILED 62
Query: 320 HCFLMFPDEKNLRNH 334
+ +L N
Sbjct: 63 KVEELLSKNYHLENE 77
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 61.7 bits (151), Expect = 4e-12
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKI 151
++ + C+ C KSF HKS RHM+ H + Y C +C + ++ K +L H+K+H G K
Sbjct: 8 DKLYPCQ-CGKSFTHKSQRDRHMS-MHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKP 65
Query: 152 FTCAQCDKAFSLKSNLSKHVRHHMENVKQCKIC 184
+ C C K F + + +HV +
Sbjct: 66 YECNICAKRFMWRDSFHRHV-TSCTKSYEAAKA 97
Score = 57.1 bits (139), Expect = 2e-10
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKI 151
R + C +C K F K ++ HM H K Y+C +CA+ + ++ + H + K
Sbjct: 35 LRPYGCGVCGKKFKMKHHLVGHMK-IHTGIKPYECNICAKRFMWRDSF--HRHVTSCTKS 91
Query: 152 FTCAQCDKAFSLKSNLS 168
+ A+ ++ + S S
Sbjct: 92 YEAAKAEQNTTEASGPS 108
Score = 38.6 bits (91), Expect = 4e-04
Identities = 18/79 (22%), Positives = 26/79 (32%), Gaps = 5/79 (6%)
Query: 229 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNK 286
H + C C K F + H + H K Y C+ C KRF D +H +
Sbjct: 32 HLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHV---TSC 88
Query: 287 EDAYVCNYCYDSFETKSTL 305
+Y + S
Sbjct: 89 TKSYEAAKAEQNTTEASGP 107
Score = 32.4 bits (75), Expect = 0.073
Identities = 23/65 (35%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Query: 259 KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHF-FHHG-NPY 316
K Y C +C K F + +H H Y C C F+ K LV H H G PY
Sbjct: 9 KLYPC-QCGKSFTHKSQRDRHMS-MHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPY 66
Query: 317 MCNHC 321
CN C
Sbjct: 67 ECNIC 71
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 61.4 bits (150), Expect = 5e-12
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 92 ERKFKCE--MCPKSFDHKSNIRRHMAATHDLQKKYKCKL--CARMYRYKWNLKAHLKMHK 147
+R F C C K + S+++ H H +K Y+C C R + LK H + H
Sbjct: 4 KRPFMCAYPGCNKRYFKLSHLQMHSR-KHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHT 62
Query: 148 GPKIFTCAQCDKAFSLKSNLSKHVRHH 174
G K F C C + FS +L H R H
Sbjct: 63 GVKPFQCKTCQRKFSRSDHLKTHTRTH 89
Score = 61.0 bits (149), Expect = 8e-12
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 92 ERKFKCEM--CPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGP 149
E+ ++C+ C + F ++RH H K ++CK C R + +LK H + H G
Sbjct: 34 EKPYQCDFKDCERRFSRSDQLKRHQR-RHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGE 92
Query: 150 KIFTC--AQCDKAFSLKSNLSKHVRHH 174
K F+C C K F+ L +H H
Sbjct: 93 KPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 42.1 bits (100), Expect = 4e-05
Identities = 35/168 (20%), Positives = 51/168 (30%), Gaps = 63/168 (37%)
Query: 122 KKYKCK--LCARMYRYKWNLKAHLKMHKGPKIFTC--AQCDKAFSLKSNLSKHVRHHMEN 177
+ + C C + Y +L+ H + H G K + C C++ FS L
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQL---------- 54
Query: 178 VKQCKICLEIFEDDEVLEEHVKSHQNRRFKCPCCERIFTSETRMRNHIDMKHADENLFKC 237
K HQ R H F+C
Sbjct: 55 ---------------------KRHQ----------RR--------------HTGVKPFQC 69
Query: 238 KKCLKVFSDEIKFHLHGRAHA--KFYRCS--ECEKRFATEDIMRQHFR 281
K C + FS H R H K + C C+K+FA D + +H
Sbjct: 70 KTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHN 117
Score = 37.9 bits (89), Expect = 0.001
Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 10/111 (9%)
Query: 206 FKC--PCCERIFTSETRMRNHIDMKHADENLFKC--KKCLKVFSDEIKFHLHGRAHA--K 259
F C P C + + + ++ H KH E ++C K C + FS + H R H K
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHS-RKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVK 65
Query: 260 FYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNY--CYDSFETKSTLVDH 308
++C C+++F+ D ++ H R H E + C + C F LV H
Sbjct: 66 PFQCKTCQRKFSRSDHLKTHTRT-HTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 30.2 bits (69), Expect = 0.44
Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 7/80 (8%)
Query: 261 YRCSE--CEKRFATEDIMRQHFRNYHNKEDAYVCNY--CYDSFETKSTLVDHF-FHHG-N 314
+ C+ C KR+ ++ H R H E Y C++ C F L H H G
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRK-HTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVK 65
Query: 315 PYMCNHCFLMFPDEKNLRNH 334
P+ C C F +L+ H
Sbjct: 66 PFQCKTCQRKFSRSDHLKTH 85
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 61.8 bits (151), Expect = 2e-11
Identities = 40/207 (19%), Positives = 71/207 (34%), Gaps = 40/207 (19%)
Query: 92 ERKFKCEM--CPKSFDHKSNIRRHMAATHDLQKKYKCK--LCARMYRYKWNLKAHLKMHK 147
+++ C C +++ ++ H+ H +K + CK C + + +L H H
Sbjct: 10 YKRYICSFADCGAAYNKNWKLQAHLC-KHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHT 68
Query: 148 GPKIFTCAQ--CDKAFSLKSNLSKHVR-HHMENVKQCKICLEIFEDDEVLEEHVKSHQNR 204
G K FTC CD F+ K+N+ KH H +
Sbjct: 69 GEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICV------------------------ 104
Query: 205 RFKCPC--CERIFTSETRMRNHIDMKHADENLFKCK--KCLKVFSDEIKFHLHGRAH--A 258
+ C C + F +++ H H + ++C C K FS + H + H
Sbjct: 105 -YVCHFENCGKAFKKHNQLKVHQFS-HTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGY 162
Query: 259 KFYRCSECEKRFATEDIMRQHFRNYHN 285
+ C T + +H H
Sbjct: 163 PCKKDDSCSFVGKTWTLYLKHVAECHQ 189
Score = 48.7 bits (117), Expect = 6e-07
Identities = 41/183 (22%), Positives = 70/183 (38%), Gaps = 16/183 (8%)
Query: 141 AHLKMHKGPKIFTC--AQCDKAFSLKSNLSKHVRHHM-ENVKQCK--ICLEIFEDDEVLE 195
+ K + C A C A++ L H+ H E CK C + F L
Sbjct: 2 GEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLT 61
Query: 196 EHVKSHQNRR-FKC--PCCERIFTSETRMRNHIDMKHADENL-FKC--KKCLKVFSDEIK 249
H +H + F C C+ FT++ M+ H + H + + C + C K F +
Sbjct: 62 RHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQ 121
Query: 250 FHLHGRAHA--KFYRCSE--CEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTL 305
+H +H Y C C+KRF+ +++H + H + C +T +
Sbjct: 122 LKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKV-HAGYPCKKDDSCSFVGKTWTLY 180
Query: 306 VDH 308
+ H
Sbjct: 181 LKH 183
Score = 46.8 bits (112), Expect = 3e-06
Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 6/87 (6%)
Query: 95 FKCEM--CPKSFDHKSNIRRHMAATHDLQKKYKCK--LCARMYRYKWNLKAHLKMHKGPK 150
+ C C K+F + ++ H +H Q Y+C C + + LK H K+H G
Sbjct: 105 YVCHFENCGKAFKKHNQLKVHQF-SHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYP 163
Query: 151 IFTCAQCDKAFSLKSNLSKHVRH-HME 176
C + KHV H +
Sbjct: 164 CKKDDSCSFVGKTWTLYLKHVAECHQD 190
Score = 45.7 bits (109), Expect = 5e-06
Identities = 44/225 (19%), Positives = 62/225 (27%), Gaps = 75/225 (33%)
Query: 117 THDLQKKYKCKL--CARMYRYKWNLKAHLKMHKGPKIFTCAQ--CDKAFSLKSNLSKHVR 172
+ K+Y C C Y W L+AHL H G K F C + C+K F+ +L++
Sbjct: 6 LPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTR--- 62
Query: 173 HHMENVKQCKICLEIFEDDEVLEEHVKSHQNRRFKCPCCERIFTSETRMRNHIDMKHADE 232
H H E
Sbjct: 63 ----------------------------HS----------LT--------------HTGE 70
Query: 233 NLFKCK--KCLKVFSDEIKFHLHGRAH----AKFYRCS--ECEKRFATEDIMRQHFRNYH 284
F C C F+ + H Y C C K F + ++ H + H
Sbjct: 71 KNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFS-H 129
Query: 285 NKEDAYVCN--YCYDSFETKSTLVDHF-FHHGN----PYMCNHCF 322
++ Y C C F S L H H G C+
Sbjct: 130 TQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVG 174
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 57.0 bits (138), Expect = 8e-11
Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 4/65 (6%)
Query: 122 KKYKCKLCARMYRYKWNLKAHLKMH---KGPKIFTCAQCDKAFSLKSNLSKHVR-HHMEN 177
+C++C R K +L H + H F C C K F +++ H H
Sbjct: 6 SGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPAL 65
Query: 178 VKQCK 182
+ +
Sbjct: 66 LLAPQ 70
Score = 52.4 bits (126), Expect = 4e-09
Identities = 11/74 (14%), Positives = 26/74 (35%), Gaps = 4/74 (5%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQ---KKYKCKLCARMYRYKWNLKAHLKMHKG 148
+CE+C + K+++ H H ++ C+ C + + ++ AH
Sbjct: 5 SSGLQCEICGFTCRQKASLNWHQR-KHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHP 63
Query: 149 PKIFTCAQCDKAFS 162
+ + S
Sbjct: 64 ALLLAPQESSGPSS 77
Score = 41.6 bits (98), Expect = 2e-05
Identities = 16/70 (22%), Positives = 23/70 (32%), Gaps = 4/70 (5%)
Query: 146 HKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENVK----QCKICLEIFEDDEVLEEHVKSH 201
G C C K++L+ H R H E V C+ C + FE + + H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 202 QNRRFKCPCC 211
P
Sbjct: 62 HPALLLAPQE 71
Score = 39.7 bits (93), Expect = 1e-04
Identities = 14/66 (21%), Positives = 20/66 (30%), Gaps = 5/66 (7%)
Query: 235 FKCKKCLKVFSDEIKFHLHGRAHA-----KFYRCSECEKRFATEDIMRQHFRNYHNKEDA 289
+C+ C + + H R HA + C C KRF D + H H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 290 YVCNYC 295
Sbjct: 68 APQESS 73
Score = 34.3 bits (79), Expect = 0.007
Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 5/62 (8%)
Query: 261 YRCSECEKRFATEDIMRQHFRNYHNKEDA---YVCNYCYDSFETKSTLVDHF-FHHGNPY 316
+C C + + H R H + A + C +C FE ++ H H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRK-HAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALL 66
Query: 317 MC 318
+
Sbjct: 67 LA 68
Score = 28.5 bits (64), Expect = 0.83
Identities = 13/66 (19%), Positives = 19/66 (28%), Gaps = 4/66 (6%)
Query: 206 FKCPCCERIFTSETRMRNHIDMKHAD---ENLFKCKKCLKVFSDEIKFHLHGRAHAKFYR 262
+C C + + H KHA+ F C+ C K F H
Sbjct: 8 LQCEICGFTCRQKASLNWHQ-RKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALL 66
Query: 263 CSECEK 268
+ E
Sbjct: 67 LAPQES 72
Score = 26.2 bits (58), Expect = 5.6
Identities = 9/41 (21%), Positives = 13/41 (31%)
Query: 4 KTYTCDFCSAAFALKHSIADHIQTEHMGNPKHQDTKQYPAF 44
+ C+FC F S+A H H P+
Sbjct: 37 LRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQESSGPSS 77
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 59.1 bits (144), Expect = 8e-11
Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 9/92 (9%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAA--THDLQKKYKCKLCARMYRYK-----WNLKAHLK 144
E + + C + FD + + H+ + H +K++ C + + L H++
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR 60
Query: 145 MHKGPKIFTC--AQCDKAFSLKSNLSKHVRHH 174
H G K C C K++S NL H+R H
Sbjct: 61 RHTGEKPHKCTFEGCRKSYSRLENLKTHLRSH 92
Score = 52.2 bits (126), Expect = 2e-08
Identities = 37/113 (32%), Positives = 52/113 (46%), Gaps = 9/113 (7%)
Query: 97 CEMCPKSFDHKSNIRRHMAATHDLQKKYKCKL--CARMYRYKWNLKAHLKMHKGPKIFTC 154
C + F + + HM H +K +KC C + Y NLK HL+ H G K + C
Sbjct: 42 CSRELRPFKAQYMLVVHMR-RHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMC 100
Query: 155 AQ--CDKAFSLKSNLSKHVR--HHMENVKQCKI--CLEIFEDDEVLEEHVKSH 201
C KAFS S+ +KH H E CK+ C + + D L +HVK+
Sbjct: 101 EHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTV 153
Score = 47.6 bits (114), Expect = 7e-07
Identities = 36/171 (21%), Positives = 51/171 (29%), Gaps = 35/171 (20%)
Query: 150 KIFTCAQCDKAFSLKSNLSKHVR----HHMENVKQCKICLEIFEDDEVLEEHVKSHQNRR 205
C + F + L H+ H C
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWG--------------------- 40
Query: 206 FKCPCCERIFTSETRMRNHIDMKHADENLFKCK--KCLKVFSDEIKFHLHGRAHA--KFY 261
C R F ++ + H+ +H E KC C K +S H R+H K Y
Sbjct: 41 -GCSRELRPFKAQYMLVVHM-RRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPY 98
Query: 262 RCSE--CEKRFATEDIMRQHFRNYHNKEDAYVCNY--CYDSFETKSTLVDH 308
C C K F+ +H H+ E YVC C + S+L H
Sbjct: 99 MCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKH 149
Score = 44.9 bits (107), Expect = 6e-06
Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 28/85 (32%)
Query: 92 ERKFKCE--MCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGP 149
E+ + CE C K+F + S+ +H TH +K Y CK
Sbjct: 95 EKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCK---------------------- 132
Query: 150 KIFTCAQCDKAFSLKSNLSKHVRHH 174
C K ++ S+L KHV+
Sbjct: 133 ----LPGCTKRYTDPSSLRKHVKTV 153
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 57.9 bits (139), Expect = 1e-10
Identities = 20/93 (21%), Positives = 32/93 (34%), Gaps = 6/93 (6%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAAT----HDLQKKYKCKLCARMYRYKWNLKAHLKMHK 147
KF+C+ C ++D + HM T D + K +L
Sbjct: 17 ASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKED 76
Query: 148 GPKIFTCAQCDKAFSLKSNLSKHV--RHHMENV 178
K+ C C +F +LS H+ H + V
Sbjct: 77 AQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKV 109
Score = 51.7 bits (123), Expect = 1e-08
Identities = 19/107 (17%), Positives = 29/107 (27%), Gaps = 8/107 (7%)
Query: 138 NLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENVK------QCKICLEIFEDD 191
+ K + + G F C C A+ L+ H+
Sbjct: 6 SGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRK 65
Query: 192 EVLEEHVKSHQNRR-FKCPCCERIFTSETRMRNH-IDMKHADENLFK 236
L E ++ KC C F S + H I KH +
Sbjct: 66 RSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSGP 112
Score = 36.3 bits (83), Expect = 0.003
Identities = 17/91 (18%), Positives = 30/91 (32%), Gaps = 8/91 (8%)
Query: 252 LHGRAH--AKFYRCSECEKRFATEDIMRQHFR-NYHNKEDAYVCNYCYDSFETKSTLVDH 308
L+G A +RC +C + T + H H ++D + + +K
Sbjct: 9 LYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSL 68
Query: 309 FFHHGN-----PYMCNHCFLMFPDEKNLRNH 334
G C +C F ++L H
Sbjct: 69 LEMEGKEDAQKVLKCMYCGHSFESLQDLSVH 99
Score = 35.9 bits (82), Expect = 0.005
Identities = 14/86 (16%), Positives = 25/86 (29%), Gaps = 11/86 (12%)
Query: 284 HNKEDAYVCNYCYDSFETKSTLVDHFFHHG-------NPYMCNHCFLMFPDEKNLRNHEC 336
+ C C +++T L H G N P +++L E
Sbjct: 14 FTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEG 73
Query: 337 T----SCFTCPFCQRKYKIEKHLEKH 358
C +C ++ + L H
Sbjct: 74 KEDAQKVLKCMYCGHSFESLQDLSVH 99
Score = 31.7 bits (71), Expect = 0.14
Identities = 23/120 (19%), Positives = 37/120 (30%), Gaps = 28/120 (23%)
Query: 4 KTYTCDFCSAAFALKHSIADHIQTEHMGNPKHQDTKQYPAFRNGSFYIRADIEQPKVKVE 63
+ C CSAA+ + T HM H + N
Sbjct: 18 SKFRCKDCSAAYDTLVEL-----TVHMNETGHYRDDNHETDNNNP--------------- 57
Query: 64 HETIMSYARRQVEYEQEQQIPAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKK 123
+R + + + +GK ++ KC C SF+ ++ HM T QK
Sbjct: 58 --------KRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKV 109
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 56.0 bits (136), Expect = 1e-10
Identities = 16/59 (27%), Positives = 25/59 (42%)
Query: 116 ATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
++ KC C+ K L+ H ++H + F C C SNLSKH++
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60
Score = 40.6 bits (96), Expect = 4e-05
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 254 GRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDH 308
G + + +CSEC +++ +R H R H + + CNYC + S L H
Sbjct: 1 GSSGSSGHPEKCSECSYSCSSKAALRIHERI-HCTDRPFKCNYCSFDTKQPSNLSKH 56
Score = 35.6 bits (83), Expect = 0.002
Identities = 10/56 (17%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Query: 228 KHADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMRQHFR 281
+ + KC +C S + +H R H + ++C+ C + +H +
Sbjct: 3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMK 58
Score = 31.7 bits (73), Expect = 0.056
Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATH 118
+R FKC C SN+ +HM
Sbjct: 35 DRPFKCNYCSFDTKQPSNLSKHM-KKF 60
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 56.0 bits (136), Expect = 2e-10
Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
Query: 92 ERKFKCEM--CPKSFDHKSNIRRHMAATHDLQKKYKCK--LCARMYRYKWNLKAHLKMHK 147
C+ C + F ++ + H H QK + C C + + +K +LK H+K+H
Sbjct: 5 SSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHS 64
Query: 148 GPKIFTCAQCDKAF 161
+ + C +
Sbjct: 65 DTRDYICEFSGPSS 78
Score = 35.2 bits (82), Expect = 0.003
Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 6/67 (8%)
Query: 261 YRCS--ECEKRFATEDIMRQHFRNYHNKEDAYVCNY--CYDSFETKSTLVDHF-FHHG-N 314
C C + F+ + H + H + ++ C C SF K L +H H
Sbjct: 8 MPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTR 67
Query: 315 PYMCNHC 321
Y+C
Sbjct: 68 DYICEFS 74
Score = 35.2 bits (82), Expect = 0.004
Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 6/71 (8%)
Query: 206 FKCPC--CERIFTSETRMRNHIDMKHADENLFKCK--KCLKVFSDEIKFHLHGRAHA--K 259
C C RIF++ + +H +H + F C C K F+ + H + H+ +
Sbjct: 8 MPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTR 67
Query: 260 FYRCSECEKRF 270
Y C
Sbjct: 68 DYICEFSGPSS 78
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 55.6 bits (135), Expect = 3e-10
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKL--CARMYRYKWNLKAHLKMHKGP 149
C K++ S+++ H+ TH +K Y C C + L H + H G
Sbjct: 5 THTCDYAGCGKTYTKSSHLKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH 63
Query: 150 KIFTCAQCDKAFSLKSNLSKHVRHHM 175
+ F C +CD+AFS +L+ H++ H
Sbjct: 64 RPFQCQKCDRAFSRSDHLALHMKRHF 89
Score = 45.6 bits (109), Expect = 9e-07
Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 3/87 (3%)
Query: 118 HDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC--AQCDKAFSLKSNLSKHVRHHM 175
C + Y +LKAHL+ H G K + C C F+ L++H R H
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61
Query: 176 -ENVKQCKICLEIFEDDEVLEEHVKSH 201
QC+ C F + L H+K H
Sbjct: 62 GHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 41.4 bits (98), Expect = 3e-05
Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 4/75 (5%)
Query: 146 HKGPKIFTCAQCDKAFSLKSNLSKHVRHHM-ENVKQCKI--CLEIFEDDEVLEEHVKSHQ 202
A C K ++ S+L H+R H E C C F + L H + H
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61
Query: 203 N-RRFKCPCCERIFT 216
R F+C C+R F+
Sbjct: 62 GHRPFQCQKCDRAFS 76
Score = 35.2 bits (82), Expect = 0.005
Identities = 17/90 (18%), Positives = 37/90 (41%), Gaps = 8/90 (8%)
Query: 196 EHVKSHQNRRFKCPCCERIFTSETRMRNHIDMKHADENLFKCKK--CLKVFSDEIKFHLH 253
+ +H C + +T + ++ H+ H E + C C F+ + H
Sbjct: 1 KRTATH---TCDYAGCGKTYTKSSHLKAHL-RTHTGEKPYHCDWDGCGWKFARSDELTRH 56
Query: 254 GRAH--AKFYRCSECEKRFATEDIMRQHFR 281
R H + ++C +C++ F+ D + H +
Sbjct: 57 YRKHTGHRPFQCQKCDRAFSRSDHLALHMK 86
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 57.3 bits (139), Expect = 4e-10
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 96 KCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKL--CARMYRYKWNLKAHLKMHKGPKIFT 153
+C KSF K + H+ H +K + C C +++ NLK H + H G K F
Sbjct: 64 ECPREGKSFKAKYKLVNHI-RVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFK 122
Query: 154 CA--QCDKAFSLKSNLSKHVRHH 174
C CD+ F+ S+ KH+ H
Sbjct: 123 CEFEGCDRRFANSSDRKKHMHVH 145
Score = 53.8 bits (130), Expect = 5e-09
Identities = 34/159 (21%), Positives = 56/159 (35%), Gaps = 27/159 (16%)
Query: 142 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVR-HHMENVKQCKICLEIFEDDEVLEEHVKS 200
+ + CD+ FS L HV H+ +Q E
Sbjct: 16 CKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEE----------- 64
Query: 201 HQNRRFKCPCCERIFTSETRMRNHIDMKHADENLFKCKK--CLKVFSDEIKFHLHGRAHA 258
CP + F ++ ++ NHI H E F C C K+F+ +H R H
Sbjct: 65 -------CPREGKSFKAKYKLVNHI-RVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHT 116
Query: 259 --KFYRCS--ECEKRFATEDIMRQHFRNYHNKEDAYVCN 293
K ++C C++RFA ++H H + + +
Sbjct: 117 GEKPFKCEFEGCDRRFANSSDRKKHMHV-HTSDKSGPSS 154
Score = 49.2 bits (118), Expect = 2e-07
Identities = 34/153 (22%), Positives = 55/153 (35%), Gaps = 18/153 (11%)
Query: 102 KSFDHKSNIRRHMAA--THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFT------ 153
S I++ ++ + Q K C R + L H+ M
Sbjct: 2 SSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCY 61
Query: 154 ---CAQCDKAFSLKSNLSKHVRHHM-ENVKQCKI--CLEIFEDDEVLEEHVKSHQNRR-F 206
C + K+F K L H+R H E C C +IF E L+ H ++H + F
Sbjct: 62 WEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPF 121
Query: 207 KCPC--CERIFTSETRMRNHIDMKHADENLFKC 237
KC C+R F + + + H+ H +
Sbjct: 122 KCEFEGCDRRFANSSDRKKHM-HVHTSDKSGPS 153
Score = 30.3 bits (69), Expect = 0.55
Identities = 14/96 (14%), Positives = 22/96 (22%), Gaps = 16/96 (16%)
Query: 265 ECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHF-FHHGNPYMCNHCFL 323
+ + C +F T LV H H
Sbjct: 2 SSGSSGQPIKQELSCKWI-DEAQLSRPKKSCDRTFSTMHELVTHVTMEHV---------- 50
Query: 324 MFPDEKNLRNHECTSCFTCPFCQRKYKIEKHLEKHI 359
+N+ CP + +K + L HI
Sbjct: 51 ----GGPEQNNHVCYWEECPREGKSFKAKYKLVNHI 82
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 54.5 bits (132), Expect = 7e-10
Identities = 12/74 (16%), Positives = 24/74 (32%), Gaps = 5/74 (6%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATH----DLQKKYKCKLCARMYRYKWNLKAHLKMHK 147
E+ + C C K+F K + H + + + C C + + + + H
Sbjct: 13 EKPYACSHCDKTFRQKQLLDMHFK-RYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCA 71
Query: 148 GPKIFTCAQCDKAF 161
GP +
Sbjct: 72 GPDGVEGENSGPSS 85
Score = 49.8 bits (120), Expect = 3e-08
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKG----PKIFTCAQCDKAFSLKSNLSKHVR 172
TH +K Y C C + +R K L H K + P F C++C K F+ ++ +++H
Sbjct: 9 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHAD 68
Query: 173 HH 174
+
Sbjct: 69 NC 70
Score = 47.1 bits (113), Expect = 3e-07
Identities = 22/108 (20%), Positives = 33/108 (30%), Gaps = 25/108 (23%)
Query: 138 NLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVR-HHMENVKQCKICLEIFEDDEVLEE 196
+ + + H G K + C+ CDK F K L H + +H N
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVP---------------- 45
Query: 197 HVKSHQNRRFKCPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVF 244
F C C + FT M H D A + + +
Sbjct: 46 -------AAFVCSKCGKTFTRRNTMARHADN-CAGPDGVEGENSGPSS 85
Score = 42.9 bits (102), Expect = 8e-06
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYH---NKEDAYVCNYCYDSFETKSTLVD 307
GR H K Y CS C+K F + ++ HF+ YH A+VC+ C +F ++T+
Sbjct: 6 SGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMAR 65
Query: 308 H-FFHHG-NPYMCNHC 321
H G + +
Sbjct: 66 HADNCAGPDGVEGENS 81
Score = 33.7 bits (78), Expect = 0.014
Identities = 7/43 (16%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 87 GKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLC 129
+ F C C K+F ++ + RH + +
Sbjct: 40 DPNFVPAAFVCSKCGKTFTRRNTMARHA-DNCAGPDGVEGENS 81
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 53.7 bits (130), Expect = 8e-10
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHL--KMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
T + + Y+CK+C+R+Y + N H + K++ C C K F+ K N++ HV+
Sbjct: 4 TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63
Score = 37.9 bits (89), Expect = 3e-04
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 229 HADENLFKCKKCLKVFSDEIKFHLHGRAHA----KFYRCSECEKRFATEDIMRQHFRNYH 284
E+ ++CK C +V++ F H K Y C C K F +D M H + H
Sbjct: 5 KEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Score = 36.4 bits (85), Expect = 0.001
Identities = 15/85 (17%), Positives = 28/85 (32%), Gaps = 26/85 (30%)
Query: 146 HKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENVKQCKICLEIFEDDEVLEEHVKSHQNRR 205
+G + C C + ++ SN +H +N +
Sbjct: 5 KEGEHTYRCKVCSRVYTHISNFCRHYV-------------------------TSHKRNVK 39
Query: 206 -FKCPCCERIFTSETRMRNHIDMKH 229
+ CP C + FT + M H+ + H
Sbjct: 40 VYPCPFCFKEFTRKDNMTAHVKIIH 64
Score = 31.8 bits (73), Expect = 0.040
Identities = 15/56 (26%), Positives = 19/56 (33%), Gaps = 4/56 (7%)
Query: 284 HNKEDAYVCNYCYDSFETKSTLVDHF--FHHGN--PYMCNHCFLMFPDEKNLRNHE 335
E Y C C + S H+ H N Y C CF F + N+ H
Sbjct: 5 KEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV 60
Score = 30.6 bits (70), Expect = 0.11
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDL 120
+ + C C K F K N+ H+ H +
Sbjct: 38 VKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 53.8 bits (130), Expect = 2e-09
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Query: 92 ERKFKCEM--CPKSFDHKSNIRRHMAATHDLQKKYKCKL--CARMYRYKWNLKAHLKMHK 147
R C+ C K + S+++ H+ TH +K YKC C + L H + H
Sbjct: 13 RRIHYCDYPGCTKVYTKSSHLKAHLR-THTGEKPYKCTWEGCDWRFARSDELTRHYRKHT 71
Query: 148 GPKIFTCAQCDKAFSLKSNLSKHVRHH 174
G K F C C+++FS +L+ H++ H
Sbjct: 72 GAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 37.6 bits (88), Expect = 9e-04
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 12/94 (12%)
Query: 194 LEEHVKSHQNRRFKCPCCERIFTSETRMRNHIDMKHADENLFKC--KKCLKVF--SDEIK 249
E + H P C +++T + ++ H+ H E +KC + C F SDE+
Sbjct: 9 DLEKRRIH---YCDYPGCTKVYTKSSHLKAHL-RTHTGEKPYKCTWEGCDWRFARSDELT 64
Query: 250 FHLHGRAH--AKFYRCSECEKRFATEDIMRQHFR 281
H R H AK ++C C + F+ D + H +
Sbjct: 65 RHY--RKHTGAKPFQCGVCNRSFSRSDHLALHMK 96
Score = 34.9 bits (81), Expect = 0.007
Identities = 26/86 (30%), Positives = 35/86 (40%), Gaps = 7/86 (8%)
Query: 235 FKCKK--CLKVFSDEIKFHLHGRAHA--KFYRCS--ECEKRFATEDIMRQHFRNYHNKED 288
C C KV++ H R H K Y+C+ C+ RFA D + +H+R H
Sbjct: 16 HYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRK-HTGAK 74
Query: 289 AYVCNYCYDSFETKSTLVDHFFHHGN 314
+ C C SF L H H N
Sbjct: 75 PFQCGVCNRSFSRSDHLALHMKRHQN 100
Score = 34.5 bits (80), Expect = 0.010
Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 8/83 (9%)
Query: 138 NLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHM-ENVKQCKI--CLEIFEDDEVL 194
++H C K ++ S+L H+R H E +C C F + L
Sbjct: 8 PDLEKRRIHYCDY----PGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDEL 63
Query: 195 EEHVKSHQN-RRFKCPCCERIFT 216
H + H + F+C C R F+
Sbjct: 64 TRHYRKHTGAKPFQCGVCNRSFS 86
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 52.8 bits (128), Expect = 2e-09
Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 108 SNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNL 167
+ H K YKC C +RYK NL +H +H G K + C C F+ +NL
Sbjct: 3 HHHHHHSH-MTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANL 61
Query: 168 SKHVRHH 174
H R H
Sbjct: 62 KTHTRIH 68
Score = 35.1 bits (82), Expect = 0.004
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 229 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMRQHFR 281
+ +KC +C F + H H K YRC+ C +F ++ H R
Sbjct: 12 THSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTR 66
Score = 29.0 bits (66), Expect = 0.52
Identities = 18/120 (15%), Positives = 28/120 (23%), Gaps = 55/120 (45%)
Query: 138 NLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENVKQCKICLEIFEDDEVLEEH 197
+ H M K + C +C +F K NL+
Sbjct: 4 HHHHHSHMTHSDKPYKCDRCQASFRYKGNLAS---------------------------- 35
Query: 198 VKSHQNRRFKCPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAH 257
H+ + H E ++C C F+ H R H
Sbjct: 36 ---HK----------TV--------------HTGEKPYRCNICGAQFNRPANLKTHTRIH 68
Score = 27.4 bits (62), Expect = 2.2
Identities = 6/23 (26%), Positives = 14/23 (60%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHM 114
E+ ++C +C F+ +N++ H
Sbjct: 43 EKPYRCNICGAQFNRPANLKTHT 65
Score = 27.4 bits (62), Expect = 2.2
Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 284 HNKEDAYVCNYCYDSFETKSTLVDHF-FHHG-NPYMCNHCFLMFPDEKNLRNH 334
+ + Y C+ C SF K L H H G PY CN C F NL+ H
Sbjct: 12 THSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH 64
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 50.2 bits (121), Expect = 2e-08
Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 3/67 (4%)
Query: 138 NLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVR-HHMENVK--QCKICLEIFEDDEVL 194
+ + + H G K + C C F+ + H+ H ENV C C + L
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61
Query: 195 EEHVKSH 201
H++
Sbjct: 62 GVHLRKQ 68
Score = 47.5 bits (114), Expect = 2e-07
Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAA-THDLQKKYKCKLCARMYRYKWNLKAHL-KMHKGP 149
E+ ++C +C F ++ H+ + K+ C C + K +L HL K H
Sbjct: 13 EKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYS 72
Query: 150 K 150
Sbjct: 73 G 73
Score = 41.7 bits (99), Expect = 1e-05
Identities = 10/60 (16%), Positives = 19/60 (31%), Gaps = 4/60 (6%)
Query: 235 FKCKKCLKVFSDEIKFHLHGRAH----AKFYRCSECEKRFATEDIMRQHFRNYHNKEDAY 290
++C C F+ +H + C C+ A + + H R H+
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGPS 75
Score = 34.4 bits (80), Expect = 0.007
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 91 QERKFKCEMCPKSFDHKSNIRRHMAATH 118
KF C C KS++ H+ H
Sbjct: 42 NVAKFHCPHCDTVIARKSDLGVHLRKQH 69
Score = 30.6 bits (70), Expect = 0.14
Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 4/49 (8%)
Query: 290 YVCNYCYDSFETKSTLVDHF-FHHGN---PYMCNHCFLMFPDEKNLRNH 334
Y C C+ F T+ H H + C HC + + +L H
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVH 64
Score = 27.5 bits (62), Expect = 1.9
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 4 KTYTCDFCSAAFALKHSIADHIQTEHMG 31
+ C C A K + H++ +H
Sbjct: 44 AKFHCPHCDTVIARKSDLGVHLRKQHSY 71
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 49.0 bits (118), Expect = 4e-08
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 106 HKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKS 165
+ R +++YKC C + + + +L H + H G K + C +C KAF +S
Sbjct: 2 SSGSSGRSEW-QQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRS 60
Query: 166 NLSKHVRHH 174
+L H R H
Sbjct: 61 HLIGHHRVH 69
Score = 32.8 bits (76), Expect = 0.023
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 229 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECEKRF 270
+ +KC +C K FS H R H K Y+C EC K F
Sbjct: 13 QRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAF 56
Score = 28.9 bits (66), Expect = 0.54
Identities = 21/120 (17%), Positives = 31/120 (25%), Gaps = 55/120 (45%)
Query: 138 NLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENVKQCKICLEIFEDDEVLEEH 197
+ + + + C +C K+FS S+LSK
Sbjct: 5 SSGRSEWQQRERRRYKCDECGKSFSHSSDLSK---------------------------- 36
Query: 198 VKSHQNRRFKCPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAH 257
H+ R H E +KC +C K F H R H
Sbjct: 37 ---HR----------RT--------------HTGEKPYKCDECGKAFIQRSHLIGHHRVH 69
Score = 27.4 bits (62), Expect = 2.2
Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 284 HNKEDAYVCNYCYDSFETKSTLVDH-FFHHG-NPYMCNHCFLMFPDEKNLRNH 334
+ Y C+ C SF S L H H G PY C+ C F +L H
Sbjct: 13 QRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 47.8 bits (115), Expect = 9e-08
Identities = 20/53 (37%), Positives = 26/53 (49%)
Query: 122 KKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
K Y C C + + L H ++H G K + C +C KAFS S L H R H
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 40.9 bits (97), Expect = 3e-05
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 139 LKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHM-ENVKQCKICLEIFEDDEVLEEH 197
+H G K + C +C KAFS S L +H R H E +C C + F + L H
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Query: 198 VKSH 201
+ H
Sbjct: 62 QRIH 65
Score = 34.4 bits (80), Expect = 0.006
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 229 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMRQHFR 281
H+ E + C +C K FS H R H K Y+C EC K F+ + H R
Sbjct: 9 HSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQR 63
Score = 28.2 bits (64), Expect = 0.82
Identities = 20/54 (37%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 284 HNKEDAYVCNYCYDSFETKSTLVDH-FFHHG-NPYMCNHCFLMFPDEKNLRNHE 335
H+ E Y C C +F S LV H H G PY C C F L NH+
Sbjct: 9 HSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQ 62
Score = 25.5 bits (57), Expect = 9.1
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRH 113
E+ +KC C K+F S + H
Sbjct: 40 EKPYKCLECGKAFSQNSGLINH 61
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 48.7 bits (115), Expect = 1e-07
Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 1/95 (1%)
Query: 140 KAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENVKQCKICLEIFEDDEVLEEHVK 199
+ + +++ C C+ S H R N C C F E+ +EH
Sbjct: 5 SSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLC-RNAAVCPYCSLRFFSPELKQEHES 63
Query: 200 SHQNRRFKCPCCERIFTSETRMRNHIDMKHADENL 234
+ ++ C C R F S + H H N+
Sbjct: 64 KCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQNNM 98
Score = 41.8 bits (97), Expect = 3e-05
Identities = 14/78 (17%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Query: 231 DENLFKCKKCLKVFSDEIKFHLHGRAHAKFYRCSECEKRFATEDIMRQHFRNYHNKEDAY 290
++ +++C+ C S ++ H R C C RF + ++ ++H +
Sbjct: 13 NKEVYQCRLCNAKLSSLLEQGSHERLCRNAAVCPYCSLRFFSPELKQEHES--KCEYKKL 70
Query: 291 VCNYCYDSFETKSTLVDH 308
C C +F++ ++ H
Sbjct: 71 TCLECMRTFKSSFSIWRH 88
Score = 41.8 bits (97), Expect = 3e-05
Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 3/78 (3%)
Query: 287 EDAYVCNYCYDSFETKSTLVDHFFHHGNPYMCNHCFLMFPDEKNLRNHECTSC---FTCP 343
++ Y C C + H N +C +C L F + + HE TC
Sbjct: 14 KEVYQCRLCNAKLSSLLEQGSHERLCRNAAVCPYCSLRFFSPELKQEHESKCEYKKLTCL 73
Query: 344 FCQRKYKIEKHLEKHIES 361
C R +K + +H
Sbjct: 74 ECMRTFKSSFSIWRHQVE 91
Score = 40.3 bits (93), Expect = 1e-04
Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 2/90 (2%)
Query: 121 QKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENVKQ 180
++ Y+C+LC +H ++ + C C F +H
Sbjct: 14 KEVYQCRLCNAKLSSLLEQGSHERLCR--NAAVCPYCSLRFFSPELKQEHESKCEYKKLT 71
Query: 181 CKICLEIFEDDEVLEEHVKSHQNRRFKCPC 210
C C+ F+ + H N+ P
Sbjct: 72 CLECMRTFKSSFSIWRHQVEVHNQNNMAPT 101
Score = 39.9 bits (92), Expect = 2e-04
Identities = 17/95 (17%), Positives = 27/95 (28%), Gaps = 4/95 (4%)
Query: 194 LEEHVKSHQNRRFKCPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLH 253
++C C +S +H + N C C F H
Sbjct: 5 SSGASPVENKEVYQCRLCNAKLSSLLEQGSH---ERLCRNAAVCPYCSLRFFSPELKQEH 61
Query: 254 GRAHA-KFYRCSECEKRFATEDIMRQHFRNYHNKE 287
K C EC + F + + +H HN+
Sbjct: 62 ESKCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQN 96
Score = 36.0 bits (82), Expect = 0.004
Identities = 18/89 (20%), Positives = 28/89 (31%), Gaps = 3/89 (3%)
Query: 165 SNLSKHVRHHMENVKQCKICLEIFEDDEVLEEHVKSHQNRRFKCPCCERIFTSETRMRNH 224
S S + V QC++C H + +N CP C F S + H
Sbjct: 3 SGSSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRN-AAVCPYCSLRFFSPELKQEH 61
Query: 225 IDMKHADENLFKCKKCLKVFSDEIKFHLH 253
+ C +C++ F H
Sbjct: 62 --ESKCEYKKLTCLECMRTFKSSFSIWRH 88
Score = 34.9 bits (79), Expect = 0.008
Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 11/85 (12%)
Query: 315 PYMCNHCFLMFPDEKNLRNHE--CTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVL 372
Y C C +HE C + CP+C ++ + ++H C T
Sbjct: 16 VYQCRLCNAKLSSLLEQGSHERLCRNAAVCPYCSLRFFSPELKQEHESKCEYKKLT---- 71
Query: 373 KTLQKCRYCQRMFRNEDKLTAHELS 397
C C R F++ + H++
Sbjct: 72 -----CLECMRTFKSSFSIWRHQVE 91
Score = 34.9 bits (79), Expect = 0.009
Identities = 12/80 (15%), Positives = 26/80 (32%), Gaps = 4/80 (5%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKI 151
+ ++C +C H + C C+ + + H + K
Sbjct: 14 KEVYQCRLCNAKLSSLLEQGSHERLCRN---AAVCPYCSLRFFSPELKQEH-ESKCEYKK 69
Query: 152 FTCAQCDKAFSLKSNLSKHV 171
TC +C + F ++ +H
Sbjct: 70 LTCLECMRTFKSSFSIWRHQ 89
Score = 27.2 bits (59), Expect = 4.4
Identities = 12/63 (19%), Positives = 17/63 (26%), Gaps = 10/63 (15%)
Query: 340 FTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSHT 399
+ C C K H C + C YC F + + HE
Sbjct: 17 YQCRLCNAKLSSLLEQGSHERLC----------RNAAVCPYCSLRFFSPELKQEHESKCE 66
Query: 400 MEK 402
+K
Sbjct: 67 YKK 69
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 46.3 bits (111), Expect = 3e-07
Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 122 KKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHV-RHH 174
+ + C++C R + + +LK H + H K + C C++AF+ + L +H + H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 34.0 bits (79), Expect = 0.007
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 235 FKCKKCLKVFSDEIKFHL--HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKE 287
F C+ C + F+ + HL H R+H K Y C C + F D++ +H + H+
Sbjct: 3 FVCEVCTRAFAR--QEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN 57
Score = 32.5 bits (75), Expect = 0.019
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 261 YRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDH 308
+ C C + FA ++ +++H+R+ H E Y C C +F + L+ H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRS-HTNEKPYPCGLCNRAFTRRDLLIRH 49
Score = 28.2 bits (64), Expect = 0.62
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATH 118
E+ + C +C ++F + + RH H
Sbjct: 28 EKPYPCGLCNRAFTRRDLLIRHAQKIH 54
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 46.1 bits (110), Expect = 6e-07
Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 3/79 (3%)
Query: 97 CEMCPKSFDHKSNIRRHMAATHDLQKKYKCK--LCARMYRYKWNLKAHLKMHKGPKIFTC 154
E C K+F + ++ H +H Q Y+C C + + LK H K+H G
Sbjct: 6 FENCGKAFKKHNQLKVHQF-SHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKD 64
Query: 155 AQCDKAFSLKSNLSKHVRH 173
C + KHV
Sbjct: 65 DSCSFVGKTWTLYLKHVAE 83
Score = 33.0 bits (76), Expect = 0.027
Identities = 16/85 (18%), Positives = 29/85 (34%), Gaps = 7/85 (8%)
Query: 206 FKCPC--CERIFTSETRMRNHIDMKHADENLFKCK--KCLKVFSDEIKFHLHGRAH--AK 259
+ C C + F +++ H H + ++C C K FS + H + H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQ-FSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYP 60
Query: 260 FYRCSECEKRFATEDIMRQHFRNYH 284
+ C T + +H H
Sbjct: 61 CKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 32.2 bits (74), Expect = 0.050
Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 7/81 (8%)
Query: 234 LFKC--KKCLKVFSDEIKFHLHGRAHA--KFYRCSE--CEKRFATEDIMRQHFRNYHNKE 287
++ C + C K F + +H +H Y C C+KRF+ +++H + H
Sbjct: 1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKV-HAGY 59
Query: 288 DAYVCNYCYDSFETKSTLVDH 308
+ C +T + + H
Sbjct: 60 PCKKDDSCSFVGKTWTLYLKH 80
Score = 30.7 bits (70), Expect = 0.19
Identities = 19/81 (23%), Positives = 27/81 (33%), Gaps = 4/81 (4%)
Query: 153 TCAQCDKAFSLKSNLSKHVRHHM-ENVKQCK--ICLEIFEDDEVLEEHVKSHQ-NRRFKC 208
C KAF + L H H + +C C + F L+ H K H K
Sbjct: 5 HFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKD 64
Query: 209 PCCERIFTSETRMRNHIDMKH 229
C + + T H+ H
Sbjct: 65 DSCSFVGKTWTLYLKHVAECH 85
Score = 26.4 bits (59), Expect = 5.2
Identities = 5/27 (18%), Positives = 9/27 (33%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATH 118
K + C + +H+A H
Sbjct: 59 YPCKKDDSCSFVGKTWTLYLKHVAECH 85
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 50.6 bits (120), Expect = 7e-07
Identities = 69/448 (15%), Positives = 132/448 (29%), Gaps = 127/448 (28%)
Query: 36 QDTKQYPAFRNGSFYIRADIEQPKVKVEHETIMSYARRQVEYEQEQQIPAQGKSIQERKF 95
K F++ +++ ET++ E Q++ Q
Sbjct: 172 LSYKVQCKMDFKIFWL--NLKNCN---SPETVL---------EMLQKLLYQ--------I 209
Query: 96 KCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYK-------WNLKAHLKMHKG 148
+S DH SNI+ H +Q + + L ++ Y N K
Sbjct: 210 DPNWTSRS-DHSSNIKLR---IHSIQAELRRLLKSKPYENCLLVLLNVQNAK-AWNA--- 261
Query: 149 PKIFTCAQC-------DK--AFSLKSNLSKHVR--------HHMENVKQCKICLEIFEDD 191
F C K L + + H+ E L+ D
Sbjct: 262 ---FN-LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317
Query: 192 ---EVLEEH----------VKSHQNR--RFKCPCCERIFTSETRMRNHIDMKHADENLFK 236
EVL + ++ +K C+++ T + + +++ E K
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL---TTIIESSLNVLEPAE-YRK 373
Query: 237 CKKCLKVFSDEIKF----------------------HLHGRAHAKFYRCSECEKRFATED 274
L VF LH + + E +
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE---KQPKESTISIPS 430
Query: 275 I---MRQHFRNY---HNK-EDAYVCNYCYDSFETKSTLVDHFFHHGNPYMCNHCFLMFPD 327
I ++ N H D Y +DS + +D +F+ ++ +H
Sbjct: 431 IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS---HIGHHL------ 481
Query: 328 EKNLRNHECTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCR-YCQRMFR 386
KN+ + E + F F ++ +E+ K N + ++L TLQ+ + Y +
Sbjct: 482 -KNIEHPERMTLFRMVFLDFRF-LEQ---KIRHDSTAWNASGSILNTLQQLKFYKPYICD 536
Query: 387 NEDKLTAHELSHTMEKTFYRNVATVSVC 414
N+ K L + + F + +C
Sbjct: 537 NDPKY--ERLVNAILD-FLPKIEENLIC 561
Score = 42.5 bits (99), Expect = 3e-04
Identities = 37/302 (12%), Positives = 77/302 (25%), Gaps = 79/302 (26%)
Query: 16 ALKHSIADHIQT-EHMGNPKHQDT------KQYPA-FRNGSFYIRADIEQPKVKVEHETI 67
+H+ K PA +R + R + P + +
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK--MFDRLSVFPPSAHIPTILL 392
Query: 68 MSYARRQVEYEQEQQIPAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCK 127
++ + ++ S K + + + + K K
Sbjct: 393 SLIWFDVIKSDVMV-------------VVNKLHKYSLVEKQP-KESTISIPSIYLELKVK 438
Query: 128 LCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSK---------HVRHHMENV 178
L N A +H+ I K F +L H+ HH++N+
Sbjct: 439 LE--------NEYA---LHR--SIVDHYNIPKTFD-SDDLIPPYLDQYFYSHIGHHLKNI 484
Query: 179 KQC-KICL--EIFEDDEVLEEHVKSHQNRRFKCPCCERIFTSET-----RMRNHIDMKHA 230
+ ++ L +F D LE+ + R T + +I
Sbjct: 485 EHPERMTLFRMVFLDFRFLEQKI-----RHDSTAWNASGSILNTLQQLKFYKPYICDNDP 539
Query: 231 DENLFKCKKCLKVFSDEIKFHLHGRAHAKFYRCSECEKRFATEDIMRQHFRNYHNK--ED 288
++ + + F L + D++R E+
Sbjct: 540 KYE--------RLVNAILDF-LP-KIEENLICSKYT-------DLLRIALMAEDEAIFEE 582
Query: 289 AY 290
A+
Sbjct: 583 AH 584
Score = 32.1 bits (72), Expect = 0.43
Identities = 28/189 (14%), Positives = 52/189 (27%), Gaps = 53/189 (28%)
Query: 223 NHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHAKFYRCSECEKRFATEDIMRQHFRN 282
+H+D + E+ ++ K L VF D + C + +D+ +
Sbjct: 5 HHMDFE-TGEHQYQYKDILSVFEDAFV---------DNFDCKD------VQDMPKSILSK 48
Query: 283 Y---------HNKEDAYVCNYCYDSFETK-STLVDHFFHHGNPYMCNHCFLM--FPDEKN 330
+ + +K +V F N+ FLM E+
Sbjct: 49 EEIDHIIMSKDAVSGTL---RLFWTLLSKQEEMVQKFV--EEVLRINYKFLMSPIKTEQR 103
Query: 331 LRNHECTSCFTC---------PFCQRKYKIEKHLEKHIESCIQLNPTTTVL--------K 373
+ F + + K ++ ++L P VL K
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK 163
Query: 374 T---LQKCR 379
T L C
Sbjct: 164 TWVALDVCL 172
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 43.9 bits (103), Expect = 2e-06
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 123 KYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
KY C+ C + LK H++ H + + C C+ +F K NL+KH++
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 39.3 bits (91), Expect = 8e-05
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 94 KFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPK 150
K+ CE C S +++H+ TH + Y C C ++ K NL H+K K
Sbjct: 1 KYICEECGIRXKKPSMLKKHIR-THTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 34.7 bits (79), Expect = 0.003
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 261 YRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHFFHH 312
Y C EC R ++++H R H Y C YC SF+TK L H
Sbjct: 2 YICEECGIRXKKPSMLKKHIRT-HTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 27.8 bits (61), Expect = 1.2
Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 235 FKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMRQHFRNY 283
+ C++C H R H + Y C+ C F T+ + +H ++
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 25.1 bits (54), Expect = 8.5
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKK 123
R + C C SF K N+ +HM + KK
Sbjct: 27 VRPYHCTYCNFSFKTKGNLTKHM-KSKAHSKK 57
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 42.7 bits (101), Expect = 8e-06
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 106 HKSNIRRHMAATHDLQKKYKCKL--CARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSL 163
H N + + Y C + C R + L H+++H G K F C C + FS
Sbjct: 4 HPMNNLLNYVVPK--MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSR 61
Query: 164 KSNLSKHVRHH 174
+L+ H+R H
Sbjct: 62 SDHLTTHIRTH 72
Score = 36.5 bits (85), Expect = 0.001
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 92 ERKFKC--EMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMH 146
R + C E C + F + RH+ H QK ++C++C R + +L H++ H
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 29.6 bits (67), Expect = 0.35
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
Query: 235 FKC--KKCLKVF--SDEIKFHLHGRAH--AKFYRCSECEKRFATEDIMRQHFR 281
+ C + C + F SDE+ H+ R H K ++C C + F+ D + H R
Sbjct: 20 YACPVESCDRRFSRSDELTRHI--RIHTGQKPFQCRICMRNFSRSDHLTTHIR 70
Score = 25.3 bits (56), Expect = 9.6
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Query: 194 LEEHVKSHQNRRFKCPC--CERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFH 251
L +V R + CP C+R F+ + HI H + F+C+ C++ FS
Sbjct: 9 LLNYVVPKM-RPYACPVESCDRRFSRSDELTRHI-RIHTGQKPFQCRICMRNFSRSDHLT 66
Query: 252 LHGRAH 257
H R H
Sbjct: 67 THIRTH 72
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 42.4 bits (100), Expect = 8e-06
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 117 THDLQKKYKCKL--CARMYRYKWNLKAHLKMHKGPKIFTCAQ--CDKAFSLKSNLSKHVR 172
+ + C C + Y +LKAH + H G K F+C+ C++ F+ LS+H R
Sbjct: 11 DSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRR 70
Query: 173 HH 174
H
Sbjct: 71 TH 72
Score = 29.7 bits (67), Expect = 0.26
Identities = 8/38 (21%), Positives = 11/38 (28%), Gaps = 2/38 (5%)
Query: 139 LKAHLKMHKGPKIFTC--AQCDKAFSLKSNLSKHVRHH 174
+ C C K + S+L H R H
Sbjct: 5 SSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTH 42
Score = 26.6 bits (59), Expect = 3.7
Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 6/60 (10%)
Query: 228 KHADENLFKCKK--CLKVFSDEIKFHLHGRAHA--KFYRCS--ECEKRFATEDIMRQHFR 281
+ C C K + H R H K + CS CE+RFA D + +H R
Sbjct: 11 DSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRR 70
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 43.8 bits (102), Expect = 1e-05
Identities = 25/123 (20%), Positives = 38/123 (30%), Gaps = 3/123 (2%)
Query: 163 LKSNLSKHVRHHMENVKQCKICLEIFEDDEVLEEHVKSHQNRRFKCPCCERIFTSETRMR 222
+ S K++ +H + LE + L K K E+
Sbjct: 6 VDSGSKKYLSNH--KGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYL 63
Query: 223 NHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHAKFYRCSECEKRFATEDIMRQHFRN 282
+ + + F C CL FS + H R C C+K F + D H
Sbjct: 64 YRL-LASKAISQFVCPLCLMPFSSSVSLKQHIRYTEHTKVCPVCKKEFTSTDSALDHVCK 122
Query: 283 YHN 285
HN
Sbjct: 123 KHN 125
Score = 41.1 bits (95), Expect = 1e-04
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 142 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENVKQCKICLEIFEDDEVLEEHVKSH 201
L K F C C FS +L +H+R+ E+ K C +C + F + +HV
Sbjct: 65 RLLASKAISQFVCPLCLMPFSSSVSLKQHIRYT-EHTKVCPVCKKEFTSTDSALDHVCKK 123
Query: 202 QNR 204
N
Sbjct: 124 HNI 126
Score = 40.7 bits (94), Expect = 1e-04
Identities = 24/109 (22%), Positives = 42/109 (38%), Gaps = 4/109 (3%)
Query: 64 HETIMSYARRQVEYEQEQQIPAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKK 123
H+ I + + Q P Q + I+ P+ D S + R +A+ +
Sbjct: 17 HKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKA--ISQ 74
Query: 124 YKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVR 172
+ C LC + +LK H++ + K C C K F+ + HV
Sbjct: 75 FVCPLCLMPFSSSVSLKQHIRYTEHTK--VCPVCKKEFTSTDSALDHVC 121
Score = 37.6 bits (86), Expect = 0.001
Identities = 21/110 (19%), Positives = 38/110 (34%), Gaps = 1/110 (0%)
Query: 121 QKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENVKQ 180
K + + L K + T + S L + + +
Sbjct: 17 HKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFV 76
Query: 181 CKICLEIFEDDEVLEEHVKSHQNRRFKCPCCERIFTSETRMRNHIDMKHA 230
C +CL F L++H++ + CP C++ FTS +H+ KH
Sbjct: 77 CPLCLMPFSSSVSLKQHIRYTE-HTKVCPVCKKEFTSTDSALDHVCKKHN 125
Score = 35.3 bits (80), Expect = 0.010
Identities = 9/53 (16%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 311 HHGNPYMCNHCFLMFPDEKNLRNH--ECTSCFTCPFCQRKYKIEKHLEKHIES 361
+ ++C C + F +L+ H CP C++++ H+
Sbjct: 70 KAISQFVCPLCLMPFSSSVSLKQHIRYTEHTKVCPVCKKEFTSTDSALDHVCK 122
Score = 35.3 bits (80), Expect = 0.011
Identities = 12/53 (22%), Positives = 20/53 (37%)
Query: 290 YVCNYCYDSFETKSTLVDHFFHHGNPYMCNHCFLMFPDEKNLRNHECTSCFTC 342
+VC C F + +L H + + +C C F + +H C C
Sbjct: 75 FVCPLCLMPFSSSVSLKQHIRYTEHTKVCPVCKKEFTSTDSALDHVCKKHNIC 127
Score = 33.4 bits (75), Expect = 0.044
Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 3/64 (4%)
Query: 251 HLHGRAHAKFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHFF 310
L + C C F++ ++QH R E VC C F + + +DH
Sbjct: 65 RLLASKAISQFVCPLCLMPFSSSVSLKQHIR---YTEHTKVCPVCKKEFTSTDSALDHVC 121
Query: 311 HHGN 314
N
Sbjct: 122 KKHN 125
Score = 29.9 bits (66), Expect = 0.63
Identities = 19/128 (14%), Positives = 36/128 (28%), Gaps = 15/128 (11%)
Query: 272 TEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHF--FHHGNPYMCNHCFLMFPDEK 329
TE + + Y + + + + L H + +
Sbjct: 2 TESDVDSGSKKYLSNHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESS 61
Query: 330 NL---RNHECTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFR 386
L + S F CP C + L++HI + + C C++ F
Sbjct: 62 YLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRY----------TEHTKVCPVCKKEFT 111
Query: 387 NEDKLTAH 394
+ D H
Sbjct: 112 STDSALDH 119
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 40.2 bits (95), Expect = 3e-05
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
G K + C QC KAFS K +L H+R H
Sbjct: 1 GSSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVH 34
Score = 26.4 bits (59), Expect = 2.5
Identities = 9/37 (24%), Positives = 19/37 (51%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFT 153
+ +K Y+C C + + K +L H+++H G +
Sbjct: 5 SSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSS 41
Score = 25.2 bits (56), Expect = 5.4
Identities = 7/23 (30%), Positives = 15/23 (65%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHM 114
E+ ++C+ C K+F K ++ H+
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHI 31
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 39.5 bits (93), Expect = 4e-05
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
+ G K F C +C FS +L KH+R H
Sbjct: 2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSH 35
Score = 31.4 bits (72), Expect = 0.043
Identities = 7/35 (20%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 126
E+ F+C+ C +F ++ +H+ +H+
Sbjct: 10 EKPFQCKECGMNFSWSCSLFKHL-RSHERTDPSGP 43
Score = 29.1 bits (66), Expect = 0.24
Identities = 8/40 (20%), Positives = 18/40 (45%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQ 156
+ +K ++CK C + + +L HL+ H+ +
Sbjct: 6 SGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPSS 45
Score = 26.8 bits (60), Expect = 1.5
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVC 292
G + K ++C EC F+ + +H R+ H + D
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRS-HERTDPSGP 43
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 6e-05
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
+ G K + CA+C KAF+++SNL KH + H
Sbjct: 2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIH 35
Score = 27.9 bits (63), Expect = 0.61
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 126
E+ + C C K+F +SN+ +H H QK
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQ-KIHTKQKPSGP 43
Score = 26.3 bits (59), Expect = 2.1
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 284 HNKEDAYVCNYCYDSFETKSTLVDH-FFHHG-NPYMCNH 320
E Y+C C +F +S L+ H H P +
Sbjct: 7 GTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSS 45
Score = 26.3 bits (59), Expect = 2.1
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
+ +K Y C C + + + NL H K+H K
Sbjct: 6 SGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 25.6 bits (57), Expect = 4.0
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 293
G + K Y C+EC K F + +H + H K+ +
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQK-IHTKQKPSGPS 44
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 7e-05
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
+ G F C++C K F+ K+NL H + H
Sbjct: 2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIH 35
Score = 29.8 bits (68), Expect = 0.14
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 126
E F C C K F HK+N+ H H ++
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQ-KIHTGERPSGP 43
Score = 27.1 bits (61), Expect = 1.4
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 293
G + + CSEC K F + + H + H E +
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQK-IHTGERPSGPS 44
Score = 26.3 bits (59), Expect = 2.5
Identities = 9/38 (23%), Positives = 18/38 (47%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
+ + + C C +++ +K NL H K+H G +
Sbjct: 6 SGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 25.9 bits (58), Expect = 3.2
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 229 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCS 264
EN F C +C KVF+ + +H + H + S
Sbjct: 7 GTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPS 44
Score = 25.1 bits (56), Expect = 6.9
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 284 HNKEDAYVCNYCYDSFETKSTLVDH-FFHHG-NPYMCN 319
E+ ++C+ C F K+ L+ H H G P +
Sbjct: 7 GTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPS 44
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 8e-05
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 142 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
G K + C+ C KAF+ KS L H + H
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSH 35
Score = 28.6 bits (65), Expect = 0.35
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 293
G + K Y+CS+C K F + + H + H E +
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQ-SHTGERHSGPS 44
Score = 28.2 bits (64), Expect = 0.44
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 126
E+ +KC C K+F KS + H +H ++
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQ-QSHTGERHSGP 43
Score = 26.3 bits (59), Expect = 2.7
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
+ +K YKC C + + K L H + H G +
Sbjct: 6 SGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 38.6 bits (91), Expect = 9e-05
Identities = 9/34 (26%), Positives = 11/34 (32%)
Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
G K + C C F L H+R H
Sbjct: 1 GSSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIH 34
Score = 32.9 bits (76), Expect = 0.010
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHM 114
E+ + CE+C F H ++ H+
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHL 31
Score = 32.5 bits (75), Expect = 0.014
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 115 AATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFT 153
+ + +K Y C++C +R+ LK+HL++H G +
Sbjct: 3 SGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSS 41
Score = 26.3 bits (59), Expect = 2.3
Identities = 8/31 (25%), Positives = 11/31 (35%), Gaps = 2/31 (6%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFR 281
+ K Y C C RF ++ H R
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLR 32
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 38.7 bits (91), Expect = 1e-04
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
+ G K F C C K+F K NL H R H
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIH 35
Score = 29.4 bits (67), Expect = 0.18
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 126
++ F+C C KSF K N+ H H +K
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQ-RIHTGEKSGPS 43
Score = 29.0 bits (66), Expect = 0.27
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
+ QK ++C C + +R K NL H ++H G K
Sbjct: 6 SGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 26.0 bits (58), Expect = 3.2
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 293
G + K + C+ C K F + + H R H E + +
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQR-IHTGEKSGPSS 44
Score = 25.2 bits (56), Expect = 6.7
Identities = 10/38 (26%), Positives = 14/38 (36%), Gaps = 2/38 (5%)
Query: 284 HNKEDAYVCNYCYDSFETKSTLVDH-FFHHG-NPYMCN 319
+ + C +C SF K LV H H G +
Sbjct: 7 GTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS 44
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 38.6 bits (91), Expect = 1e-04
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
+ K + C C K ++ + NL H R H
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVH 35
Score = 29.8 bits (68), Expect = 0.13
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 126
E+ +KCE C K ++ + N+ H H +K
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQ-RVHMGEKTSGP 43
Score = 26.7 bits (60), Expect = 2.0
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 229 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCS 264
+ E +KC+ C K ++ + +H R H K S
Sbjct: 7 GSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPS 44
Score = 26.3 bits (59), Expect = 2.4
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
+ ++K YKC+ C + Y + NL H ++H G K
Sbjct: 6 SGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 25.5 bits (57), Expect = 4.9
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 293
G + + K Y+C +C K + + H R H E +
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQR-VHMGEKTSGPS 44
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 1e-04
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
+ G K++ C +C K+FS L KH R H
Sbjct: 2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLH 35
Score = 27.5 bits (62), Expect = 0.97
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 126
E+ + C+ C KSF + +H H +K
Sbjct: 10 EKLYNCKECGKSFSRAPCLLKHE-RLHSGEKPSGP 43
Score = 26.3 bits (59), Expect = 2.3
Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 229 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCS 264
E L+ CK+C K FS H R H+ K S
Sbjct: 7 GTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPS 44
Score = 26.3 bits (59), Expect = 2.9
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 293
G + K Y C EC K F+ + +H R H+ E +
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHER-LHSGEKPSGPS 44
Score = 26.0 bits (58), Expect = 3.5
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
+ +K Y CK C + + L H ++H G K
Sbjct: 6 SGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 38.3 bits (90), Expect = 1e-04
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
+ G K + C+QC K FSLKS L H R H
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSH 35
Score = 27.9 bits (63), Expect = 0.59
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 126
+ + C C K+F KS + H +H K
Sbjct: 10 VKPYGCSQCAKTFSLKSQLIVHQ-RSHTGVKPSGP 43
Score = 27.9 bits (63), Expect = 0.76
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 293
G + K Y CS+C K F+ + + H R+ H +
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRS-HTGVKPSGPS 44
Score = 26.0 bits (58), Expect = 3.6
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
+ K Y C CA+ + K L H + H G K
Sbjct: 6 SGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 25.2 bits (56), Expect = 6.6
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 284 HNKEDAYVCNYCYDSFETKSTLVDH-FFHHG-NPYMCN 319
Y C+ C +F KS L+ H H G P +
Sbjct: 7 GTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPS 44
Score = 24.8 bits (55), Expect = 8.2
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 229 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCS 264
+ C +C K FS + + +H R+H K S
Sbjct: 7 GTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPS 44
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 1e-04
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
+ G K + CA+C KAF+ +SNL H + H
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIH 35
Score = 29.4 bits (67), Expect = 0.18
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 126
E+ ++C C K+F +SN+ H H +K
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQ-KIHTGEKPSGP 43
Score = 26.3 bits (59), Expect = 2.8
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
+ +K Y+C C + + + NL H K+H G K
Sbjct: 6 SGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 25.5 bits (57), Expect = 4.5
Identities = 11/39 (28%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Query: 284 HNKEDAYVCNYCYDSFETKSTLVDH-FFHHG-NPYMCNH 320
E Y C C +F +S L H H G P +
Sbjct: 7 GTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSS 45
Score = 25.5 bits (57), Expect = 4.8
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 229 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCS 264
E ++C +C K F+D H + H K S
Sbjct: 7 GTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPS 44
Score = 25.2 bits (56), Expect = 5.9
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVC 292
G + K YRC+EC K F + H + H E
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQK-IHTGEKPSGP 43
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 1e-04
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
+ G K + C+ C K+F+ KS L H + H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCH 35
Score = 31.0 bits (71), Expect = 0.051
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 126
E+ +KC C KSF KS +R H H ++
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQ-KCHTGERHSGP 43
Score = 28.3 bits (64), Expect = 0.48
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 293
G + K Y+CS+C K F + +R H + H E +
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQK-CHTGERHSGPS 44
Score = 27.9 bits (63), Expect = 0.63
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
+ +K YKC C + + +K L+ H K H G +
Sbjct: 6 SGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 39.3 bits (91), Expect = 1e-04
Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 6/64 (9%)
Query: 138 NLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENVKQCKICLEIFEDDEVLEEH 197
+ K+H G + C++C F +S LS+ C+ C + + L +
Sbjct: 5 SSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRRKTP------MCEKCRKDSCQEAALNKD 58
Query: 198 VKSH 201
+
Sbjct: 59 EGNE 62
Score = 34.6 bits (79), Expect = 0.006
Identities = 11/69 (15%), Positives = 22/69 (31%), Gaps = 8/69 (11%)
Query: 108 SNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNL 167
+ + H + KC C ++ + L K C +C K ++ L
Sbjct: 4 GSSGKRQK-IHLGDRSQKCSKCGIIFIRRSTLSRR-------KTPMCEKCRKDSCQEAAL 55
Query: 168 SKHVRHHME 176
+K +
Sbjct: 56 NKDEGNESG 64
Score = 31.2 bits (70), Expect = 0.099
Identities = 13/59 (22%), Positives = 19/59 (32%), Gaps = 8/59 (13%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPK 150
+R KC C F +S + R K C+ C + + L G K
Sbjct: 16 DRSQKCSKCGIIFIRRSTLSRR--------KTPMCEKCRKDSCQEAALNKDEGNESGKK 66
Score = 28.1 bits (62), Expect = 1.1
Identities = 12/62 (19%), Positives = 20/62 (32%), Gaps = 6/62 (9%)
Query: 229 HADENLFKCKKCLKVFSDEIKFHLHGRAHAKFYRCSECEKRFATEDIMRQHFRNYHNKED 288
H + KC KC +F + K C +C K E + + N + +
Sbjct: 13 HLGDRSQKCSKCGIIFI-----RRSTLSRRKTPMCEKCRKDSCQEAALNKDEGN-ESGKK 66
Query: 289 AY 290
Sbjct: 67 TS 68
Score = 26.5 bits (58), Expect = 4.2
Identities = 13/52 (25%), Positives = 17/52 (32%), Gaps = 5/52 (9%)
Query: 284 HNKEDAYVCNYCYDSFETKSTLVDHFFHHGNPYMCNHCFLMFPDEKNLRNHE 335
H + + C+ C F +STL MC C E L E
Sbjct: 13 HLGDRSQKCSKCGIIFIRRSTLSRR-----KTPMCEKCRKDSCQEAALNKDE 59
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 38.3 bits (90), Expect = 1e-04
Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 116 ATHDLQKKYKCKLCARMYRYKWNLKAHLKM-HKGPKIFTCAQCDKAFS 162
++ + K Y C+ C + + +L H+K H + C S
Sbjct: 5 SSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52
Score = 37.6 bits (88), Expect = 3e-04
Identities = 8/38 (21%), Positives = 19/38 (50%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLC 129
+ + C+ C K F ++ H+ H ++ +KC++
Sbjct: 10 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVW 47
Score = 35.2 bits (82), Expect = 0.002
Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSF 299
G + + K Y C C K F+ D + H + H E + C
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
Score = 34.1 bits (79), Expect = 0.004
Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVR--HHMENVKQCKIC 184
+ K + C C K FS +L+ H++ H E +C++
Sbjct: 2 SSGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVW 47
Score = 29.5 bits (67), Expect = 0.22
Identities = 10/41 (24%), Positives = 16/41 (39%)
Query: 206 FKCPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSD 246
+ C C + F+ + HI H E KC+ + S
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 29.5 bits (67), Expect = 0.22
Identities = 8/47 (17%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 229 HADENLFKCKKCLKVFSDEIKFHLHGRA-HA--KFYRCSECEKRFAT 272
+ + C+ C K FS + H + H + ++C ++
Sbjct: 7 GSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 26.4 bits (59), Expect = 2.5
Identities = 9/41 (21%), Positives = 12/41 (29%), Gaps = 3/41 (7%)
Query: 284 HNKEDAYVCNYCYDSFETKSTLVDHF--FHHG-NPYMCNHC 321
+ Y+C C F L H H P+ C
Sbjct: 7 GSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVW 47
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.2 bits (90), Expect = 1e-04
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
+ G K F C++C KAF+ KSNL H R H
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTH 35
Score = 30.1 bits (69), Expect = 0.12
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 126
E+ F+C C K+F+ KSN+ H TH +K
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQ-RTHTGEKPSGP 43
Score = 25.5 bits (57), Expect = 4.1
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
+ +K ++C C + + K NL H + H G K
Sbjct: 6 SGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 25.1 bits (56), Expect = 6.3
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVC 292
G + K + CSEC+K F T+ + H R H E
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRT-HTGEKPSGP 43
Score = 24.8 bits (55), Expect = 9.9
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 229 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCS 264
E F+C +C K F+ + +H R H K S
Sbjct: 7 GTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 2e-04
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
+ G K F C +C KAF+ KS LS H + H
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIH 35
Score = 27.9 bits (63), Expect = 0.77
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 126
+ F+C C K+F KS + H H +K
Sbjct: 10 GKHFECTECGKAFTRKSTLSMHQ-KIHTGEKPSGP 43
Score = 27.1 bits (61), Expect = 1.4
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 293
G + K + C+EC K F + + H + H E +
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKI-HTGEKPSGPS 44
Score = 26.7 bits (60), Expect = 2.0
Identities = 10/40 (25%), Positives = 17/40 (42%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQ 156
+ K ++C C + + K L H K+H G K +
Sbjct: 6 SGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSS 45
Score = 25.9 bits (58), Expect = 3.3
Identities = 11/39 (28%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Query: 284 HNKEDAYVCNYCYDSFETKSTLVDH-FFHHG-NPYMCNH 320
+ C C +F KSTL H H G P +
Sbjct: 7 GTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSS 45
Score = 25.2 bits (56), Expect = 7.1
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 229 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCS 264
F+C +C K F+ + +H + H K S
Sbjct: 7 GTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 37.9 bits (89), Expect = 2e-04
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 142 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
K C +C + F+LKS+L++H R H
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIH 35
Score = 27.1 bits (61), Expect = 1.3
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
+ K ++C C R + K +L H ++H G K
Sbjct: 6 SGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 25.2 bits (56), Expect = 5.4
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRH 113
+ +C C + F KS++ +H
Sbjct: 10 TKSHQCHECGRGFTLKSHLNQH 31
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 37.8 bits (89), Expect = 2e-04
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
+ G K + C +C KAF+ KSNL H R H
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTH 35
Score = 29.0 bits (66), Expect = 0.26
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 126
E+ ++C C K+F+ KSN+ H TH +
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQ-RTHTGESGPSS 43
Score = 27.1 bits (61), Expect = 1.3
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
+ +K Y+C C + + K NL H + H G +
Sbjct: 6 SGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 26.3 bits (59), Expect = 2.1
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVC 292
G + K Y C+EC+K F T+ + H R H E
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRT-HTGESGPSS 43
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 37.7 bits (88), Expect = 2e-04
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 142 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHM 175
+ G K F C CD++FS +L+ H + HM
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM 35
Score = 25.8 bits (57), Expect = 3.8
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 4/27 (14%)
Query: 92 ERKFKCEMCPKSF---DH-KSNIRRHM 114
+ F+C C +SF DH + +RHM
Sbjct: 9 IKPFQCPDCDRSFSRSDHLALHRKRHM 35
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 2e-04
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
+ G K+F C +C K F+ S+L+ H R H
Sbjct: 2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIH 35
Score = 27.9 bits (63), Expect = 0.61
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 126
++ FKC C K+F S++ H H +K
Sbjct: 10 KKLFKCNECKKTFTQSSSLTVHQ-RIHTGEKPSGP 43
Score = 27.5 bits (62), Expect = 0.87
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 293
G + A K ++C+EC+K F + H R H E +
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQR-IHTGEKPSGPS 44
Score = 25.9 bits (58), Expect = 2.9
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
+ +K +KC C + + +L H ++H G K
Sbjct: 6 SGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 25.9 bits (58), Expect = 3.2
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 229 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCS 264
A + LFKC +C K F+ +H R H K S
Sbjct: 7 GAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS 44
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 37.9 bits (89), Expect = 2e-04
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
+ G + C+QC+K+FS K L H R H
Sbjct: 2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMH 35
Score = 30.6 bits (70), Expect = 0.072
Identities = 10/41 (24%), Positives = 16/41 (39%)
Query: 116 ATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQ 156
++ YKC C + + K L H +MH K +
Sbjct: 5 SSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSS 45
Score = 29.4 bits (67), Expect = 0.18
Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 126
+KC C KSF K + H H +K
Sbjct: 10 VNPYKCSQCEKSFSGKLRLLVHQ-RMHTREKPSGP 43
Score = 29.0 bits (66), Expect = 0.27
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 293
G + A Y+CS+CEK F+ + + H R H +E +
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQR-MHTREKPSGPS 44
Score = 28.3 bits (64), Expect = 0.48
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 229 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCS 264
A N +KC +C K FS +++ +H R H K S
Sbjct: 7 GAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPS 44
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 2e-04
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
+ G + + C C KAF+ +SNL KH + H
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIH 35
Score = 29.4 bits (67), Expect = 0.22
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 126
ER + C +C K+F +SN+ +H H +K
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQ-KIHTGEKPSGP 43
Score = 27.1 bits (61), Expect = 1.3
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 284 HNKEDAYVCNYCYDSFETKSTLVDH-FFHHG-NPYMCNH 320
E Y+C C +F +S L+ H H G P +
Sbjct: 7 GTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSS 45
Score = 26.3 bits (59), Expect = 2.2
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
+ ++ Y C +C + + + NL H K+H G K
Sbjct: 6 SGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 25.9 bits (58), Expect = 3.2
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 293
G + + Y C+ C K F + +H + H E +
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQK-IHTGEKPSGPS 44
Score = 25.1 bits (56), Expect = 7.0
Identities = 10/38 (26%), Positives = 13/38 (34%), Gaps = 2/38 (5%)
Query: 229 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCS 264
E + C C K F+D H + H K S
Sbjct: 7 GTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPS 44
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 2e-04
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
+ G K + C++C KAFS KS L H+R H
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTH 35
Score = 29.1 bits (66), Expect = 0.23
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 126
E+ + C C K+F KS + HM TH +K
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHM-RTHSGEKPSGP 43
Score = 27.5 bits (62), Expect = 0.98
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVC 292
G + A K Y CSEC K F+++ + H R H+ E
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRT-HSGEKPSGP 43
Score = 26.0 bits (58), Expect = 3.0
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 229 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCS 264
A E + C +C K FS + +H R H+ K S
Sbjct: 7 GAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
Score = 25.6 bits (57), Expect = 5.2
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
+ +K Y C C + + K L H++ H G K
Sbjct: 6 SGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 2e-04
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
+ G K + C +C K ++ K NL H + H
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVH 35
Score = 29.8 bits (68), Expect = 0.14
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 126
E+ +KCE C K ++ K N+ H H ++
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQ-KVHTGERPSGP 43
Score = 26.7 bits (60), Expect = 1.8
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
+ +K YKC+ C + Y K+NL H K+H G +
Sbjct: 6 SGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 26.3 bits (59), Expect = 2.5
Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 293
G + K Y+C +C K + ++ + H + H E +
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQK-VHTGERPSGPS 44
Score = 25.2 bits (56), Expect = 5.4
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 229 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCS 264
E +KC+KC K ++ + +H + H + S
Sbjct: 7 GTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPS 44
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 37.5 bits (88), Expect = 2e-04
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
+ G K + C +C KAF KS L H R H
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTH 35
Score = 26.3 bits (59), Expect = 2.5
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 126
E+ ++C C K+F KS + H TH
Sbjct: 10 EKPYECNECGKAFIWKSLLIVHE-RTHAGVSGPSS 43
Score = 26.0 bits (58), Expect = 3.7
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
+ +K Y+C C + + +K L H + H G +
Sbjct: 6 SGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 37.5 bits (88), Expect = 2e-04
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 142 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
G K F CA+C K+FS+ S L+ H R H
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIH 35
Score = 27.9 bits (63), Expect = 0.80
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 126
E+ F+C C KSF S + H H +K
Sbjct: 10 EKPFECAECGKSFSISSQLATHQ-RIHTGEKPSGP 43
Score = 25.9 bits (58), Expect = 3.4
Identities = 12/38 (31%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 229 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCS 264
E F+C +C K FS + H R H K S
Sbjct: 7 GTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS 44
Score = 25.2 bits (56), Expect = 7.3
Identities = 8/38 (21%), Positives = 16/38 (42%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
+ +K ++C C + + L H ++H G K
Sbjct: 6 SGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 24.8 bits (55), Expect = 7.7
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVC 292
G + K + C+EC K F+ + H R H E
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQR-IHTGEKPSGP 43
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 2e-04
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 142 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
G K ++C C KAF L ++L++H+R H
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVH 35
Score = 27.5 bits (62), Expect = 0.83
Identities = 7/36 (19%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCK 127
E+ + C +C K+F +++ +H+ H +
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHL-RVHTQETLSGPS 44
Score = 26.3 bits (59), Expect = 2.3
Identities = 8/38 (21%), Positives = 17/38 (44%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
+ +K Y C +C + + +L HL++H +
Sbjct: 6 SGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGP 43
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 37.3 bits (87), Expect = 3e-04
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 146 HKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
G + C QC K+F+ + +L+ H R
Sbjct: 6 SGGETPYLCGQCGKSFTQRGSLAVHQRSC 34
Score = 28.8 bits (65), Expect = 0.28
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 85 AQGKSIQERKFKCEMCPKSFDHKSNIRRHM 114
+ G S E + C C KSF + ++ H
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQ 31
Score = 25.3 bits (56), Expect = 4.9
Identities = 5/34 (14%), Positives = 12/34 (35%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPK 150
+ + Y C C + + + +L H +
Sbjct: 5 SSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSG 38
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 37.6 bits (88), Expect = 3e-04
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
+ G K + C +C K+F S L KH R H
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVH 35
Score = 28.7 bits (65), Expect = 0.38
Identities = 11/40 (27%), Positives = 19/40 (47%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQ 156
+ +K Y CK C + +R+ L H ++H G K +
Sbjct: 6 SGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSS 45
Score = 28.3 bits (64), Expect = 0.43
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCK 127
E+ + C+ C KSF S + +H H +K
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQ-RVHSGEKPSGPS 44
Score = 26.8 bits (60), Expect = 1.6
Identities = 11/39 (28%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Query: 229 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSE 265
E + CK+C K F H R H+ K S
Sbjct: 7 GTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSS 45
Score = 26.0 bits (58), Expect = 2.8
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 293
G + K Y C EC K F + +H R H+ E +
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQR-VHSGEKPSGPS 44
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 3e-04
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
+ G K + C +C K + + +L H R H
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVH 35
Score = 29.0 bits (66), Expect = 0.27
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 126
E+ +KC C K + + ++ H H +K
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQ-RVHTGEKLSGP 43
Score = 26.7 bits (60), Expect = 1.8
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 293
G + + K Y+C EC K + + H R H E +
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQR-VHTGEKLSGPS 44
Score = 26.3 bits (59), Expect = 2.3
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
+ +K YKC C + Y+ + +L H ++H G K+
Sbjct: 6 SGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 25.2 bits (56), Expect = 5.9
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 229 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCS 264
+ E +KC +C K + + H R H K S
Sbjct: 7 GSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 37.1 bits (87), Expect = 3e-04
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 146 HKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
G K F C+ C+KAFS KS L H + H
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVHQQTH 33
Score = 29.4 bits (67), Expect = 0.18
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 126
E+ F C C K+F KS + H TH +K
Sbjct: 8 EKPFGCSCCEKAFSSKSYLLVHQ-QTHAEEKPSGP 41
Score = 27.5 bits (62), Expect = 0.78
Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 229 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCS 264
+ E F C C K FS + +H + HA K S
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPS 42
Score = 27.5 bits (62), Expect = 1.0
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 259 KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 293
K + CS CEK F+++ + H + H +E +
Sbjct: 9 KPFGCSCCEKAFSSKSYLLVHQQT-HAEEKPSGPS 42
Score = 26.0 bits (58), Expect = 3.3
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 284 HNKEDAYVCNYCYDSFETKSTLVDH-FFHHG-NPYMCN 319
+ E + C+ C +F +KS L+ H H P +
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPS 42
Score = 24.8 bits (55), Expect = 7.3
Identities = 8/39 (20%), Positives = 14/39 (35%)
Query: 116 ATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
+ +K + C C + + K L H + H K
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 3e-04
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
+ G K + C+ C K+F KS L H R H
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIH 35
Score = 27.1 bits (61), Expect = 1.2
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 126
E+ ++C C KSF KS + H H +
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQ-RIHTGENPSGP 43
Score = 26.0 bits (58), Expect = 3.6
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 293
G + K Y CS+C K F + + H R H E+ +
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQR-IHTGENPSGPS 44
Score = 25.6 bits (57), Expect = 4.2
Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 278 QHFRNYHNKEDAYVCNYCYDSFETKSTLVDH-FFHHG-NPYMCNH 320
+ E Y C+ C SF KS L H H G NP +
Sbjct: 2 SSGSS-GTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPSS 45
Score = 25.2 bits (56), Expect = 6.0
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 229 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCS 264
E ++C C K F + + H+H R H S
Sbjct: 7 GTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPS 44
Score = 24.8 bits (55), Expect = 8.1
Identities = 9/38 (23%), Positives = 16/38 (42%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
+ +K Y+C C + + K L H ++H G
Sbjct: 6 SGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 3e-04
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 142 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
G + + C++C KAF KS LS H R H
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIH 35
Score = 27.1 bits (61), Expect = 1.2
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 126
ER ++C C K+F KS + H H +K
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQ-RIHRGEKPSGP 43
Score = 27.1 bits (61), Expect = 1.4
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 293
G + + Y CSEC K F + + H R H E +
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQR-IHRGEKPSGPS 44
Score = 26.7 bits (60), Expect = 2.0
Identities = 13/45 (28%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Query: 278 QHFRNYHNKEDAYVCNYCYDSFETKSTLVDH-FFHHG-NPYMCNH 320
E Y C+ C +F KSTL H H G P +
Sbjct: 2 SSGS-SGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPSS 45
Score = 25.2 bits (56), Expect = 6.6
Identities = 9/38 (23%), Positives = 18/38 (47%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
+ ++ Y+C C + + K L H ++H+G K
Sbjct: 6 SGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 37.1 bits (87), Expect = 3e-04
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
+ G K F C +C K FS +S L+ H + H
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLH 35
Score = 29.8 bits (68), Expect = 0.12
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 126
E+ FKC C K F +S + H H +K
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHH-KLHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 1.6
Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 229 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCS 264
E FKC +C K FS ++H + H K S
Sbjct: 7 GTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPS 44
Score = 25.9 bits (58), Expect = 3.3
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
+ +K +KC C + + + L H K+H G K
Sbjct: 6 SGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 25.2 bits (56), Expect = 7.2
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 293
G + K ++C EC K F+ + H + H E +
Sbjct: 3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHK-LHTGEKPSGPS 44
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 37.2 bits (87), Expect = 3e-04
Identities = 13/34 (38%), Positives = 14/34 (41%)
Query: 142 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHM 175
G K TC +C K F S L H R HM
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHM 36
Score = 27.2 bits (61), Expect = 1.1
Identities = 9/39 (23%), Positives = 18/39 (46%)
Query: 116 ATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
++ +K + C C + + Y L+ H ++H G K
Sbjct: 5 SSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGP 43
Score = 27.2 bits (61), Expect = 1.2
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRH 113
E+ C+ C K+F + S +R H
Sbjct: 10 EKSHTCDECGKNFCYISALRIH 31
Score = 25.2 bits (56), Expect = 6.9
Identities = 10/38 (26%), Positives = 13/38 (34%), Gaps = 2/38 (5%)
Query: 229 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCS 264
+ E C +C K F +H R H K S
Sbjct: 7 GSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 24.9 bits (55), Expect = 7.8
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 284 HNKEDAYVCNYCYDSFETKSTLVDH 308
+ E ++ C+ C +F S L H
Sbjct: 7 GSGEKSHTCDECGKNFCYISALRIH 31
Score = 24.9 bits (55), Expect = 8.4
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFR 281
G + + K + C EC K F +R H R
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQR 33
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 37.1 bits (87), Expect = 3e-04
Identities = 11/34 (32%), Positives = 13/34 (38%)
Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
+ G K F C +C K F S H R H
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSH 35
Score = 29.1 bits (66), Expect = 0.26
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 126
E+ FKCE C K F S H +H +K
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQ-RSHSGEKPSGP 43
Score = 27.5 bits (62), Expect = 0.99
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 293
G + + K ++C EC K F T H R H+ E +
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQR-SHSGEKPSGPS 44
Score = 26.7 bits (60), Expect = 1.7
Identities = 8/38 (21%), Positives = 16/38 (42%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
+ +K +KC+ C + + +H + H G K
Sbjct: 6 SGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGP 43
Score = 26.4 bits (59), Expect = 2.3
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 229 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCS 264
+ E FKC++C K F + + H R+H+ K S
Sbjct: 7 GSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 3e-04
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
+ G K + C +C KAF+ K+NL++H R H
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIH 35
Score = 28.6 bits (65), Expect = 0.36
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 126
E+ ++C C K+F K+N+ +H H +K
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQ-RIHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 1.9
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 293
G + K YRC EC K FA + + QH R H E +
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQR-IHTGEKPSGPS 44
Score = 25.9 bits (58), Expect = 3.5
Identities = 11/45 (24%), Positives = 14/45 (31%), Gaps = 3/45 (6%)
Query: 278 QHFRNYHNKEDAYVCNYCYDSFETKSTLVDH-FFHHG-NPYMCNH 320
E Y C C +F K+ L H H G P +
Sbjct: 2 SSGS-SGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPSS 45
Score = 25.9 bits (58), Expect = 3.6
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
+ +K Y+C C + + K NL H ++H G K
Sbjct: 6 SGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 4e-04
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
+ G K F C C K+F +S L++H H
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVH 35
Score = 31.7 bits (73), Expect = 0.028
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 126
E+ FKC++C KSF +S + RH H +K
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHS-MVHTAEKPSGP 43
Score = 27.1 bits (61), Expect = 1.4
Identities = 8/38 (21%), Positives = 16/38 (42%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
+ +K +KC +C + + + L H +H K
Sbjct: 6 SGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGP 43
Score = 25.9 bits (58), Expect = 3.0
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 3/43 (6%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 293
G + K ++C C K F + +H H E +
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSM-VHTAEKPSGPS 44
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 37.1 bits (87), Expect = 4e-04
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
+ G K + C +CD FS S+L H H
Sbjct: 2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVH 35
Score = 31.4 bits (72), Expect = 0.044
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 126
E+ +KC C F S++R H H +K
Sbjct: 10 EKTWKCRECDMCFSQASSLRLHQ-NVHVGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.19
Identities = 9/40 (22%), Positives = 18/40 (45%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQ 156
+ +K +KC+ C + +L+ H +H G K +
Sbjct: 6 SGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSS 45
Score = 28.7 bits (65), Expect = 0.37
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 293
G + K ++C EC+ F+ +R H H E +
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQN-VHVGEKPSGPS 44
Score = 26.7 bits (60), Expect = 1.5
Identities = 11/38 (28%), Positives = 14/38 (36%), Gaps = 2/38 (5%)
Query: 229 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCS 264
E +KC++C FS LH H K S
Sbjct: 7 GMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPS 44
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 4e-04
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
+ G K + C C K+F S+L+ H R H
Sbjct: 2 SSGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIH 35
Score = 29.8 bits (68), Expect = 0.14
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 126
E+ +KC++C KSF + S++ H H +K
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQ-RIHTGEKPSGP 43
Score = 27.5 bits (62), Expect = 0.92
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
+ +K YKC +C + +RY +L H ++H G K
Sbjct: 6 SGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 26.3 bits (59), Expect = 2.3
Identities = 11/39 (28%), Positives = 13/39 (33%), Gaps = 2/39 (5%)
Query: 229 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSE 265
E +KC C K F +H R H K S
Sbjct: 7 GTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSS 45
Score = 25.6 bits (57), Expect = 4.1
Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 3/43 (6%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 293
G + K Y+C C K F + H R H E +
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQR-IHTGEKPSGPS 44
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 4e-04
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
+ G K F C C KAFS L++H R H
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIH 35
Score = 27.9 bits (63), Expect = 0.67
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 126
E+ F C C K+F + +H H +K
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHR-RIHTGEKPSGP 43
Score = 25.9 bits (58), Expect = 3.0
Identities = 14/38 (36%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 229 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCS 264
E F C C K FSD I + H R H K S
Sbjct: 7 GTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 25.6 bits (57), Expect = 4.9
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
+ +K + C C + + L H ++H G K
Sbjct: 6 SGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 24.8 bits (55), Expect = 8.2
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 293
G + K + C +C K F+ + QH R H E +
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRR-IHTGEKPSGPS 44
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 4e-04
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 142 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
G K + C+ C K+F+ KS L H + H
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQIH 35
Score = 27.5 bits (62), Expect = 1.1
Identities = 13/39 (33%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 284 HNKEDAYVCNYCYDSFETKSTLVDH-FFHHG-NPYMCNH 320
E Y C+ C SF KS L H H G P +
Sbjct: 7 GTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSS 45
Score = 26.3 bits (59), Expect = 2.3
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 293
G + K Y CS C K F + + H + H E +
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQ-IHTGEKPSGPS 44
Score = 26.3 bits (59), Expect = 2.5
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCK 127
E+ ++C +C KSF KS + H H +K
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQ-QIHTGEKPSGPS 44
Score = 25.6 bits (57), Expect = 4.0
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
+ +K Y+C +C + + K L H ++H G K
Sbjct: 6 SGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 24.8 bits (55), Expect = 8.3
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 229 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCS 264
E ++C C K F+ + + H+H + H K S
Sbjct: 7 GTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPS 44
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 4e-04
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
+ G K + C +C K FS KS LS H R H
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTH 35
Score = 29.0 bits (66), Expect = 0.29
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 126
E+ + C C K+F KS + H TH +K
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQ-RTHTGEKPSGP 43
Score = 27.5 bits (62), Expect = 0.90
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 293
G + + K Y C+EC K F+ + I+ H R H E +
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRT-HTGEKPSGPS 44
Score = 26.7 bits (60), Expect = 1.7
Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 229 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSE 265
+ E + C +C K FS + H R H K S
Sbjct: 7 GSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSS 45
Score = 26.7 bits (60), Expect = 2.0
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
+ +K Y C C + + K L AH + H G K
Sbjct: 6 SGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 24.8 bits (55), Expect = 8.1
Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 284 HNKEDAYVCNYCYDSFETKSTLVDH-FFHHG-NPYMCN 319
+ E Y CN C +F KS L H H G P +
Sbjct: 7 GSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 36.7 bits (86), Expect = 4e-04
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 142 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
G + C+ C K F SN +H R H
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIH 35
Score = 27.9 bits (63), Expect = 0.65
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 126
ER +C C K F SN +H H +K
Sbjct: 10 ERGHRCSDCGKFFLQASNFIQHR-RIHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 2.0
Identities = 7/38 (18%), Positives = 16/38 (42%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
+ ++ ++C C + + N H ++H G K
Sbjct: 6 SGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 24.8 bits (55), Expect = 9.2
Identities = 11/38 (28%), Positives = 12/38 (31%), Gaps = 2/38 (5%)
Query: 229 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCS 264
E +C C K F F H R H K S
Sbjct: 7 GHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS 44
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 4e-04
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 142 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
G + + C++C KAF+ KS L H R H
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIH 35
Score = 27.8 bits (63), Expect = 0.82
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 284 HNKEDAYVCNYCYDSFETKSTLVDH-FFHHG-NPYMCNH 320
E Y C+ C +F KSTL+ H H G P +
Sbjct: 7 GTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPSS 45
Score = 27.5 bits (62), Expect = 1.0
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 126
ER ++C C K+F KS + H H +K
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQ-RIHTGEKPSGP 43
Score = 27.1 bits (61), Expect = 1.2
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 293
G + + Y CSEC K FA + + H R H E +
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQR-IHTGEKPSGPS 44
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 5e-04
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 142 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
G K + C+ C KAFS + +LS H R H
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIH 35
Score = 27.1 bits (61), Expect = 1.5
Identities = 9/35 (25%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 126
E+ ++C +C K+F H+ ++ H H +K
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQ-RIHSGKKPSGP 43
Score = 26.3 bits (59), Expect = 2.9
Identities = 9/38 (23%), Positives = 20/38 (52%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
+ +K Y+C +C + + ++ +L H ++H G K
Sbjct: 6 SGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 25.9 bits (58), Expect = 3.2
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 293
G + K Y CS C K F+ + H R H+ + +
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQR-IHSGKKPSGPS 44
Score = 25.5 bits (57), Expect = 4.5
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 284 HNKEDAYVCNYCYDSFETKSTLVDH-FFHHG-NPYMCNH 320
E Y C+ C +F + +L H H G P +
Sbjct: 7 GTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSS 45
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 5e-04
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
+ G K + C +C KAF S L +H R H
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIH 35
Score = 29.4 bits (67), Expect = 0.20
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 126
E+ + CE C K+F H S ++ H H +K
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQ-RIHTGEKPSGP 43
Score = 26.3 bits (59), Expect = 2.8
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 293
G + K Y C EC K F + +++H R H E +
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQR-IHTGEKPSGPS 44
Score = 26.0 bits (58), Expect = 2.9
Identities = 9/38 (23%), Positives = 18/38 (47%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
+ +K Y C+ C + + + L+ H ++H G K
Sbjct: 6 SGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 5e-04
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 142 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
G K + C C KAF L + L +H R H
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIH 35
Score = 27.9 bits (63), Expect = 0.66
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 126
E+ + C+ C K+F + + RH H +K
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQ-RIHTGEKPSGP 43
Score = 27.1 bits (61), Expect = 1.5
Identities = 9/40 (22%), Positives = 16/40 (40%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQ 156
+ +K Y C C + + L H ++H G K +
Sbjct: 6 SGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSS 45
Score = 25.9 bits (58), Expect = 3.2
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 278 QHFRNYHNKEDAYVCNYCYDSFETKSTLVDH-FFHHG-NPYMCNH 320
+ E YVC+YC +F + LV H H G P +
Sbjct: 2 SSGS-SGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSS 45
Score = 25.6 bits (57), Expect = 5.1
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 293
G + + K Y C C K F + +H R H E +
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQR-IHTGEKPSGPS 44
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 5e-04
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
+ G K + C +C K+F KS+L++H R H
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIH 35
Score = 28.6 bits (65), Expect = 0.35
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 126
E+ + C C KSF KS++ RH H +K
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHR-RIHTGEKPSGP 43
Score = 25.9 bits (58), Expect = 3.5
Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Query: 229 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSE 265
E + C +C K F + + H R H K S
Sbjct: 7 GTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPSS 45
Score = 25.9 bits (58), Expect = 3.5
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 293
G + K Y C+EC K F + + +H R H E +
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRR-IHTGEKPSGPS 44
Score = 25.6 bits (57), Expect = 5.3
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
+ +K Y C C + + K +L H ++H G K
Sbjct: 6 SGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 36.3 bits (85), Expect = 5e-04
Identities = 9/33 (27%), Positives = 12/33 (36%)
Query: 142 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
G K + C C F ++L HV H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIH 34
Score = 29.4 bits (67), Expect = 0.15
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHM 114
E+ +KCE C F +++R H+
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHV 31
Score = 27.9 bits (63), Expect = 0.61
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPK 150
+ +K YKC+ C + +L+AH+ +H G
Sbjct: 5 SSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSG 38
Score = 25.2 bits (56), Expect = 6.6
Identities = 8/31 (25%), Positives = 11/31 (35%), Gaps = 2/31 (6%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFR 281
+ K Y+C C RF +R H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVL 32
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 36.8 bits (86), Expect = 5e-04
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
+ G K + C +C K F + +L H H
Sbjct: 2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVH 35
Score = 29.8 bits (68), Expect = 0.12
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 126
E+ +KCE C K F + ++ H H +K
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHH-MVHTGEKPSGP 43
Score = 26.3 bits (59), Expect = 2.4
Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 3/43 (6%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 293
G + K Y+C EC K F + H H E +
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHM-VHTGEKPSGPS 44
Score = 26.3 bits (59), Expect = 2.6
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
+ +K YKC+ C + + + +L H +H G K
Sbjct: 6 SGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 26.0 bits (58), Expect = 3.7
Identities = 10/38 (26%), Positives = 14/38 (36%), Gaps = 2/38 (5%)
Query: 229 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCS 264
E +KC++C K F + H H K S
Sbjct: 7 GTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 36.3 bits (85), Expect = 6e-04
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
+ G K + C +C KAF KS L H R H
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTH 35
Score = 27.8 bits (63), Expect = 0.76
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 126
+ + C C K+F KS + H TH +
Sbjct: 10 MKPYVCNECGKAFRSKSYLIIHT-RTHTGESGPSS 43
Score = 26.7 bits (60), Expect = 2.0
Identities = 10/38 (26%), Positives = 15/38 (39%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
+ K Y C C + +R K L H + H G +
Sbjct: 6 SGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 26.3 bits (59), Expect = 2.3
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVC 292
G + K Y C+EC K F ++ + H R H E
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRT-HTGESGPSS 43
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.4 bits (85), Expect = 6e-04
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 142 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
G K + C QC KAFS++S+L+ H H
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIH 35
Score = 27.5 bits (62), Expect = 0.95
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCK 127
E+ ++C C K+F +S++ H A H +K
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQ-AIHTGKKPSGPS 44
Score = 27.1 bits (61), Expect = 1.3
Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 284 HNKEDAYVCNYCYDSFETKSTLVDH-FFHHG-NPYMCNH 320
E Y CN C +F +S+L H H G P +
Sbjct: 7 GTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPSS 45
Score = 26.3 bits (59), Expect = 2.9
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
+ +K Y+C C + + + +L H +H G K
Sbjct: 6 SGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
Score = 25.2 bits (56), Expect = 6.4
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 293
G + K Y C++C K F+ + H H + +
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQA-IHTGKKPSGPS 44
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.4 bits (85), Expect = 6e-04
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 142 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
G K C +C K+FS S L H R H
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIH 35
Score = 27.5 bits (62), Expect = 1.1
Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 284 HNKEDAYVCNYCYDSFETKSTLVDH-FFHHG-NPYMCNH 320
E + C C SF S L+ H H G NP +
Sbjct: 7 GTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSS 45
Score = 26.0 bits (58), Expect = 3.1
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 126
E+ +C C KSF S + H H +
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQ-RIHTGENPSGP 43
Score = 26.0 bits (58), Expect = 3.2
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 293
G + K + C EC K F+ + H R H E+ +
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQR-IHTGENPSGPS 44
Score = 26.0 bits (58), Expect = 3.7
Identities = 7/38 (18%), Positives = 17/38 (44%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
+ +K ++C+ C + + + L H ++H G
Sbjct: 6 SGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 25.2 bits (56), Expect = 7.4
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 229 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCS 264
E +C++C K FS + +H R H S
Sbjct: 7 GTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPS 44
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 36.3 bits (85), Expect = 6e-04
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 142 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
G K F C +C K+++ + +L++H R H
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVH 35
Score = 27.5 bits (62), Expect = 1.1
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 126
E+ FKC C KS++ + ++ +H H +K
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQ-RVHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 1.6
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 293
G + K ++C EC K + + QH R H E +
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQR-VHTGEKPSGPS 44
Score = 26.7 bits (60), Expect = 2.0
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
+ +K +KC C + Y + +L H ++H G K
Sbjct: 6 SGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 25.2 bits (56), Expect = 7.0
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 229 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCS 264
E FKC +C K ++ + H R H K S
Sbjct: 7 GTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPS 44
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.3 bits (85), Expect = 6e-04
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 142 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
G K + C C KAFS ++L++H R H
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVH 35
Score = 27.5 bits (62), Expect = 1.00
Identities = 9/35 (25%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 126
E+ ++C++C K+F H +++ +H H +K
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQ-RVHSGEKPSGP 43
Score = 25.9 bits (58), Expect = 3.2
Identities = 9/38 (23%), Positives = 19/38 (50%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
+ +K Y+C +C + + + +L H ++H G K
Sbjct: 6 SGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 25.9 bits (58), Expect = 3.3
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 293
G + K Y C C K F+ + QH R H+ E +
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQR-VHSGEKPSGPS 44
Score = 25.2 bits (56), Expect = 5.8
Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 3/45 (6%)
Query: 278 QHFRNYHNKEDAYVCNYCYDSFETKSTLVDH-FFHHG-NPYMCNH 320
E Y C+ C +F ++L H H G P +
Sbjct: 2 SSGS-SGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPSS 45
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.3 bits (85), Expect = 6e-04
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
+ G K + C +C KAFS+ S+L+ H H
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIH 35
Score = 28.6 bits (65), Expect = 0.31
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 126
+ + C C K+F S++ H H +K
Sbjct: 10 VKPYMCNECGKAFSVYSSLTTHQ-VIHTGEKPSGP 43
Score = 26.3 bits (59), Expect = 2.7
Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 284 HNKEDAYVCNYCYDSFETKSTLVDH-FFHHG-NPYMCNH 320
Y+CN C +F S+L H H G P +
Sbjct: 7 GTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSS 45
Score = 25.9 bits (58), Expect = 3.0
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 293
G + K Y C+EC K F+ + H H E +
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQV-IHTGEKPSGPS 44
Score = 25.9 bits (58), Expect = 3.3
Identities = 9/38 (23%), Positives = 14/38 (36%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
+ K Y C C + + +L H +H G K
Sbjct: 6 SGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 24.8 bits (55), Expect = 9.7
Identities = 9/38 (23%), Positives = 11/38 (28%), Gaps = 2/38 (5%)
Query: 229 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCS 264
+ C +C K FS H H K S
Sbjct: 7 GTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPS 44
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.4 bits (85), Expect = 6e-04
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
+ G K + C C KAF+ K++L++H + H
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTH 35
Score = 27.5 bits (62), Expect = 0.84
Identities = 10/36 (27%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCK 127
E+ ++C++C K+F K+++ +H TH +K
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQ-KTHTGEKPSGPS 44
Score = 26.3 bits (59), Expect = 2.3
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
+ +K Y+CK+C++ + K +L H K H G K
Sbjct: 6 SGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 26.3 bits (59), Expect = 2.9
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 293
G + K Y C C K F + + QH + H E +
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQK-THTGEKPSGPS 44
Score = 26.0 bits (58), Expect = 3.7
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 229 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSE 265
E ++CK C K F+ + H + H K S
Sbjct: 7 GTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSS 45
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 36.4 bits (85), Expect = 6e-04
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 142 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
G + + C +C KAF KS+L H R H
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSH 35
Score = 28.7 bits (65), Expect = 0.32
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCK 127
+R ++C C K+F KS++ H +H +K
Sbjct: 10 QRPYECIECGKAFKTKSSLICHR-RSHTGEKPSGPS 44
Score = 27.9 bits (63), Expect = 0.59
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 253 HGRAH--AKFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 293
G + + Y C EC K F T+ + H R+ H E +
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRS-HTGEKPSGPS 44
Score = 26.3 bits (59), Expect = 2.6
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 278 QHFRNYHNKEDAYVCNYCYDSFETKSTLVDH-FFHHG-NPYMCN 319
+ + Y C C +F+TKS+L+ H H G P +
Sbjct: 2 SSGSS-GTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
Score = 26.0 bits (58), Expect = 3.0
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
+ Q+ Y+C C + ++ K +L H + H G K
Sbjct: 6 SGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 26.0 bits (58), Expect = 3.1
Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 229 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSE 265
+ ++C +C K F + H R+H K S
Sbjct: 7 GTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPSS 45
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.4 bits (85), Expect = 7e-04
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
+ G K + C +C KAFS S L++H R H
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVH 35
Score = 27.5 bits (62), Expect = 1.0
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 126
+ ++C C K+F S + RH H +K
Sbjct: 10 GKPYQCNECGKAFSQTSKLARHQ-RVHTGEKPSGP 43
Score = 25.6 bits (57), Expect = 4.4
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 293
G + K Y+C+EC K F+ + +H R H E +
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQR-VHTGEKPSGPS 44
Score = 25.6 bits (57), Expect = 4.6
Identities = 11/39 (28%), Positives = 13/39 (33%), Gaps = 2/39 (5%)
Query: 284 HNKEDAYVCNYCYDSFETKSTLVDH-FFHHG-NPYMCNH 320
Y CN C +F S L H H G P +
Sbjct: 7 GTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPSS 45
Score = 25.2 bits (56), Expect = 6.1
Identities = 9/38 (23%), Positives = 15/38 (39%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
+ K Y+C C + + L H ++H G K
Sbjct: 6 SGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.3 bits (85), Expect = 7e-04
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 142 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
G K F C +C K F+ S L H R H
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVH 35
Score = 28.3 bits (64), Expect = 0.50
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 126
E+ FKCE C K F S + H H +K
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQ-RVHTGEKPSGP 43
Score = 27.1 bits (61), Expect = 1.3
Identities = 9/40 (22%), Positives = 19/40 (47%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQ 156
+ +K +KC+ C + + L +H ++H G K +
Sbjct: 6 SGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSS 45
Score = 26.7 bits (60), Expect = 1.8
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 293
G + + K ++C EC KRF + H R H E +
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQR-VHTGEKPSGPS 44
Score = 26.3 bits (59), Expect = 2.5
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 229 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCS 264
+ E FKC++C K F+ + H H R H K S
Sbjct: 7 GSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPS 44
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.4 bits (85), Expect = 7e-04
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 142 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
G K + C +C KAF +S+L+ H H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATH 35
Score = 29.0 bits (66), Expect = 0.30
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 126
E+ +KC C K+F +S++ H ATH +K
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQ-ATHSGEKPSGP 43
Score = 27.5 bits (62), Expect = 1.1
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
+ +K YKC C + +R + +L H H G K
Sbjct: 6 SGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 26.7 bits (60), Expect = 1.9
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 293
G + K Y+C+EC K F + H H+ E +
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQAT-HSGEKPSGPS 44
Score = 25.2 bits (56), Expect = 5.4
Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 284 HNKEDAYVCNYCYDSFETKSTLVDH-FFHHG-NPYMCN 319
E Y CN C +F +S+L H H G P +
Sbjct: 7 GTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPS 44
Score = 25.2 bits (56), Expect = 6.7
Identities = 10/38 (26%), Positives = 14/38 (36%), Gaps = 2/38 (5%)
Query: 229 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCS 264
E +KC +C K F +H H+ K S
Sbjct: 7 GTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPS 44
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 36.4 bits (85), Expect = 7e-04
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
+ G K C +C KAF KS L H R H
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTH 35
Score = 29.8 bits (68), Expect = 0.13
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 126
E+ KC C K+F KS + H TH K
Sbjct: 10 EKPCKCTECGKAFCWKSQLIMHQ-RTHVDDKHSGP 43
Score = 28.3 bits (64), Expect = 0.50
Identities = 9/38 (23%), Positives = 15/38 (39%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
+ +K KC C + + +K L H + H K
Sbjct: 6 SGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 27.9 bits (63), Expect = 0.57
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 293
G + K +C+EC K F + + H R H + +
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRT-HVDDKHSGPS 44
Score = 26.0 bits (58), Expect = 3.0
Identities = 9/38 (23%), Positives = 12/38 (31%), Gaps = 2/38 (5%)
Query: 284 HNKEDAYVCNYCYDSFETKSTLVDH-FFHHG-NPYMCN 319
E C C +F KS L+ H H +
Sbjct: 7 GTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPS 44
Score = 26.0 bits (58), Expect = 3.6
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 229 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCS 264
E KC +C K F + + +H R H K S
Sbjct: 7 GTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPS 44
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 36.4 bits (84), Expect = 7e-04
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
+ G F C++CD+ F+ ++ L +H R H
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTH 35
Score = 28.3 bits (63), Expect = 0.46
Identities = 7/35 (20%), Positives = 15/35 (42%)
Query: 116 ATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPK 150
++ + +KC C R++ + L H + H
Sbjct: 5 SSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKS 39
Score = 26.7 bits (59), Expect = 1.6
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRH 113
E FKC C + F ++ + +H
Sbjct: 10 ENPFKCSKCDRVFTQRNYLVQH 31
Score = 26.4 bits (58), Expect = 2.1
Identities = 9/31 (29%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFR 281
G + A ++CS+C++ F + + QH R
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHER 33
Score = 26.4 bits (58), Expect = 2.3
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 229 HADENLFKCKKCLKVFSDEIKFHLHGRAHA 258
A EN FKC KC +VF+ H R HA
Sbjct: 7 GAGENPFKCSKCDRVFTQRNYLVQHERTHA 36
Score = 24.8 bits (54), Expect = 9.7
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 377 KCRYCQRMFRNEDKLTAHELSHTMEK 402
KC C R+F + L HE +H +
Sbjct: 14 KCSKCDRVFTQRNYLVQHERTHARKS 39
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 37.6 bits (87), Expect = 7e-04
Identities = 14/83 (16%), Positives = 25/83 (30%), Gaps = 20/83 (24%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKI 151
+ + C ++F + H+ H + +C W
Sbjct: 23 QLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVC------YWE------------- 63
Query: 152 FTCAQCDKAFSLKSNLSKHVRHH 174
C + K+F K L H+R H
Sbjct: 64 -ECPREGKSFKAKYKLVNHIRVH 85
Score = 29.6 bits (66), Expect = 0.54
Identities = 14/75 (18%), Positives = 24/75 (32%), Gaps = 11/75 (14%)
Query: 145 MHKGPKIFTCAQCDKAFSLKSNLSKHV-RHHMENVKQ---------CKICLEIFEDDEVL 194
+ + CD+ FS L HV H+ +Q C + F+ L
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 195 EEHVKSHQN-RRFKC 208
H++ H +
Sbjct: 79 VNHIRVHTGEKSGPS 93
Score = 29.6 bits (66), Expect = 0.58
Identities = 14/74 (18%), Positives = 24/74 (32%), Gaps = 1/74 (1%)
Query: 333 NHECTSCFTCPFCQRKYKIEKHLEKHIESC-IQLNPTTTVLKTLQKCRYCQRMFRNEDKL 391
E C R + L H+ + + ++C + F+ + KL
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 392 TAHELSHTMEKTFY 405
H HT EK+
Sbjct: 79 VNHIRVHTGEKSGP 92
Score = 28.8 bits (64), Expect = 1.00
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 4 KTYTCDFCSAAFALKHSIADHIQTEHMGNPKHQD 37
+ C F+ H + H+ EH+G P+ +
Sbjct: 24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNN 57
Score = 28.4 bits (63), Expect = 1.2
Identities = 14/70 (20%), Positives = 21/70 (30%), Gaps = 10/70 (14%)
Query: 259 KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCY--------DSFETKSTLVDHFF 310
C++ F+T + H H + CY SF+ K LV+H
Sbjct: 24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIR 83
Query: 311 HHGN--PYMC 318
H
Sbjct: 84 VHTGEKSGPS 93
Score = 27.2 bits (60), Expect = 4.0
Identities = 16/86 (18%), Positives = 25/86 (29%), Gaps = 10/86 (11%)
Query: 189 EDDEVLEEHVKSHQNRRFKCPCCERIFTSETRMRNHIDMKHADENLFK--------CKKC 240
+ L C+R F++ + H+ M+H C +
Sbjct: 9 PIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPRE 68
Query: 241 LKVFSDEIKFHLHGRAHA--KFYRCS 264
K F + K H R H K S
Sbjct: 69 GKSFKAKYKLVNHIRVHTGEKSGPSS 94
Score = 26.5 bits (58), Expect = 5.6
Identities = 15/78 (19%), Positives = 23/78 (29%), Gaps = 15/78 (19%)
Query: 284 HNKEDAYVCNYCYDSFETKSTLVDHFFH---HGNPYMCNHCFLMFPDEKNLRNHECTSCF 340
+ + C +F T LV H G + C+ EC
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW----------EECPREG 69
Query: 341 TCPFCQRKYKIEKHLEKH 358
F + YK+ H+ H
Sbjct: 70 K-SFKAK-YKLVNHIRVH 85
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.3 bits (85), Expect = 7e-04
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 142 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
G K + C +C KAFS S L++H R H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIH 35
Score = 27.9 bits (63), Expect = 0.76
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 126
E+ +KC C K+F S + RH H +K
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQ-RIHTGEKPSGP 43
Score = 26.3 bits (59), Expect = 2.8
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 293
G + K Y+C+EC K F+ + +H R H E +
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQR-IHTGEKPSGPS 44
Score = 25.6 bits (57), Expect = 4.6
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
+ +K YKC C + + L H ++H G K
Sbjct: 6 SGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 25.6 bits (57), Expect = 5.2
Identities = 12/39 (30%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Query: 284 HNKEDAYVCNYCYDSFETKSTLVDH-FFHHG-NPYMCNH 320
E Y CN C +F S L H H G P +
Sbjct: 7 GTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSS 45
Score = 24.8 bits (55), Expect = 7.6
Identities = 13/38 (34%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 229 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCS 264
E +KC +C K FS K H R H K S
Sbjct: 7 GTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 8e-04
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 142 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
G K F C +C K F+ S+L H R H
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVH 35
Score = 26.7 bits (60), Expect = 2.0
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 293
G + + K ++C EC KRF + H R H E +
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQR-VHTGEKPSGPS 44
Score = 26.4 bits (59), Expect = 2.7
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 126
E+ F+CE C K F S++ H H +K
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQ-RVHTGEKPSGP 43
Score = 26.0 bits (58), Expect = 3.1
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 229 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCS 264
+ E F+C++C K F+ H H R H K S
Sbjct: 7 GSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS 44
Score = 25.6 bits (57), Expect = 5.1
Identities = 8/38 (21%), Positives = 19/38 (50%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
+ +K ++C+ C + + +L +H ++H G K
Sbjct: 6 SGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.3 bits (85), Expect = 8e-04
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 142 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
G + C +C KAFS K L H R H
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTH 35
Score = 27.5 bits (62), Expect = 1.1
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 126
E ++C C K+F K + H TH +K
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQ-RTHAGEKPSGP 43
Score = 26.3 bits (59), Expect = 2.4
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 284 HNKEDAYVCNYCYDSFETKSTLVDH-FFHHG-NPYMCNH 320
E+ Y C+ C +F K L+ H H G P +
Sbjct: 7 GTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSS 45
Score = 25.9 bits (58), Expect = 3.2
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 293
G + Y C EC K F+ + + H R H E +
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRT-HAGEKPSGPS 44
Score = 25.2 bits (56), Expect = 6.1
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
+ + Y+C C + + K+ L +H + H G K
Sbjct: 6 SGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 24.8 bits (55), Expect = 7.9
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 229 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCS 264
EN ++C +C K FS + + H R HA K S
Sbjct: 7 GTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPS 44
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 8e-04
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
+ G K + C +C K F+ S+L+ H R H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIH 35
Score = 26.7 bits (60), Expect = 2.0
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 126
E+ +KC C K F S++ H H K
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQ-RIHTGVKPSGP 43
Score = 26.3 bits (59), Expect = 2.7
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 293
G + K Y+C+EC K F + H R H +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQR-IHTGVKPSGPS 44
Score = 26.3 bits (59), Expect = 2.7
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
+ +K YKC C +++ +L H ++H G K
Sbjct: 6 SGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 25.6 bits (57), Expect = 4.4
Identities = 12/38 (31%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 229 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCS 264
E +KC +C KVF+ H R H K S
Sbjct: 7 GTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 8e-04
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 142 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
G K + C +C K F S LS+H R H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIH 35
Score = 29.4 bits (67), Expect = 0.18
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 126
E+ +KC C K F H S + RH H +K
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQ-RIHTGEKPSGP 43
Score = 27.1 bits (61), Expect = 1.3
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
+ +K YKC C +++R+ L H ++H G K
Sbjct: 6 SGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 1.7
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 293
G + K Y+C+EC K F + +H R H E +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQR-IHTGEKPSGPS 44
Score = 26.7 bits (60), Expect = 1.7
Identities = 12/39 (30%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Query: 229 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSE 265
E +KC +C KVF H R H K S
Sbjct: 7 GTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSS 45
Score = 25.6 bits (57), Expect = 4.6
Identities = 12/45 (26%), Positives = 14/45 (31%), Gaps = 3/45 (6%)
Query: 278 QHFRNYHNKEDAYVCNYCYDSFETKSTLVDH-FFHHG-NPYMCNH 320
+ E Y CN C F S L H H G P +
Sbjct: 2 SSGSS-GTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSS 45
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.9 bits (84), Expect = 8e-04
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
+ G K F C +C KAF +L+ H+R H
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIH 35
Score = 27.5 bits (62), Expect = 0.91
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 126
E+ FKC+ C K+F ++ H+ H +K
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHL-RIHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 2.1
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
+ +K +KCK C + +R +L +HL++H G K
Sbjct: 6 SGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 25.9 bits (58), Expect = 3.9
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 293
G + + K ++C EC K F + H R H E +
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLR-IHTGEKPSGPS 44
Score = 25.2 bits (56), Expect = 6.4
Identities = 14/38 (36%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 229 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCS 264
+ E FKCK+C K F I H R H K S
Sbjct: 7 GSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 8e-04
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
+ G K + C +C KAF SNL+ H H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIH 35
Score = 28.2 bits (64), Expect = 0.46
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 126
E+ +KC C K+F SN+ H H +K
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQ-VIHTGEKPSGP 43
Score = 27.1 bits (61), Expect = 1.1
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
+ +K YKC C + +R NL H +H G K
Sbjct: 6 SGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 25.2 bits (56), Expect = 5.6
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 293
G + K Y+C+EC K F + H H E +
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQV-IHTGEKPSGPS 44
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 9e-04
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
+ G K + C +C KAF S+ ++H R H
Sbjct: 2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLH 35
Score = 28.3 bits (64), Expect = 0.56
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 126
E+ +KC C K+F S+ +H H Q+
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQ-RLHTGQRPSGP 43
Score = 26.8 bits (60), Expect = 1.5
Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 293
G + K Y+C EC K F QH R H + +
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQR-LHTGQRPSGPS 44
Score = 26.4 bits (59), Expect = 2.7
Identities = 8/38 (21%), Positives = 16/38 (42%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
+ +K YKC C + + + H ++H G +
Sbjct: 6 SGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 25.6 bits (57), Expect = 4.9
Identities = 11/38 (28%), Positives = 14/38 (36%), Gaps = 2/38 (5%)
Query: 229 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCS 264
E +KC +C K F D H R H + S
Sbjct: 7 GTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 25.2 bits (56), Expect = 7.0
Identities = 10/39 (25%), Positives = 13/39 (33%), Gaps = 2/39 (5%)
Query: 284 HNKEDAYVCNYCYDSFETKSTLVDH-FFHHG-NPYMCNH 320
E Y C C +F S+ H H G P +
Sbjct: 7 GTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSS 45
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 35.9 bits (84), Expect = 0.001
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 142 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
G K + C +C KAFS ++L +H R H
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVH 35
Score = 25.9 bits (58), Expect = 3.2
Identities = 8/35 (22%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 126
E+ ++C+ C K+F +++ +H H +K
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQ-RVHTGEKPSGP 43
Score = 25.2 bits (56), Expect = 5.8
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
+ +K Y+CK C + + +L H ++H G K
Sbjct: 6 SGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 35.9 bits (84), Expect = 0.001
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
+ G + C +C K FS K L H + H
Sbjct: 2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTH 35
Score = 25.5 bits (57), Expect = 4.2
Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 126
E ++C C K F K + H TH Q
Sbjct: 10 ENPYECCECGKVFSRKDQLVSHQ-KTHSGQSGPSS 43
Score = 25.2 bits (56), Expect = 6.6
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
+ + Y+C C +++ K L +H K H G +
Sbjct: 6 SGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 24.8 bits (55), Expect = 9.8
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVC 292
G + Y C EC K F+ +D + H + H+ +
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQK-THSGQSGPSS 43
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 0.001
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 142 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
G + F C +C K F +S+L+ H+R H
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLH 35
Score = 28.7 bits (65), Expect = 0.35
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 126
ER FKC C K F +S++ H+ H +K
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHL-RLHSREKSSGP 43
Score = 27.5 bits (62), Expect = 0.81
Identities = 8/39 (20%), Positives = 19/39 (48%)
Query: 116 ATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
++ ++ +KC C + + + +L HL++H K
Sbjct: 5 SSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 26.7 bits (60), Expect = 1.7
Identities = 10/43 (23%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 293
G + + + ++C+EC K F + H R H++E + +
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLR-LHSREKSSGPS 44
Score = 26.0 bits (58), Expect = 3.5
Identities = 12/38 (31%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 229 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCS 264
+ E FKC +C K F H R H+ K S
Sbjct: 7 GSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS 44
Score = 24.8 bits (55), Expect = 9.7
Identities = 9/38 (23%), Positives = 13/38 (34%), Gaps = 2/38 (5%)
Query: 284 HNKEDAYVCNYCYDSFETKSTLVDHF-FHHG-NPYMCN 319
+ E + CN C F +S L H H +
Sbjct: 7 GSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS 44
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.5 bits (83), Expect = 0.001
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
+ G K + C +C K F+ S+L +H H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIH 35
Score = 26.7 bits (60), Expect = 1.6
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 126
E+ +KC C K F S++ RH H +K
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHR-GIHTGEKPSGP 43
Score = 25.5 bits (57), Expect = 5.0
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
+ +K YKC C +++ +L H +H G K
Sbjct: 6 SGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 24.7 bits (55), Expect = 9.5
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 293
G + K Y+C+EC K F + +H H E +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRG-IHTGEKPSGPS 44
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 0.001
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
+ +G K + C++C K+FS L++H H
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQHWITH 35
Score = 28.3 bits (64), Expect = 0.45
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 126
E+ ++C C KSF + +H TH +K
Sbjct: 10 EKPYQCSECGKSFSGSYRLTQHW-ITHTREKPSGP 43
Score = 27.1 bits (61), Expect = 1.4
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 293
G + K Y+CSEC K F+ + QH+ H +E +
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWI-THTREKPSGPS 44
Score = 26.0 bits (58), Expect = 3.7
Identities = 10/38 (26%), Positives = 14/38 (36%), Gaps = 2/38 (5%)
Query: 229 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCS 264
E ++C +C K FS + H H K S
Sbjct: 7 GEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPS 44
Score = 26.0 bits (58), Expect = 3.9
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
+ + +K Y+C C + + + L H H K
Sbjct: 6 SGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 25.2 bits (56), Expect = 5.7
Identities = 10/38 (26%), Positives = 13/38 (34%), Gaps = 2/38 (5%)
Query: 284 HNKEDAYVCNYCYDSFETKSTLVDHF-FHHG-NPYMCN 319
E Y C+ C SF L H+ H P +
Sbjct: 7 GEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPS 44
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 35.4 bits (82), Expect = 0.001
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 146 HKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
G K ++CA+C + FS + L +H + H
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMH 33
Score = 26.9 bits (60), Expect = 1.3
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 115 AATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKG 148
++ +K Y C C + L H KMH
Sbjct: 2 SSGSSGEKPYSCAECKETFSDNNRLVQHQKMHTV 35
Score = 26.9 bits (60), Expect = 1.6
Identities = 5/22 (22%), Positives = 12/22 (54%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRH 113
E+ + C C ++F + + +H
Sbjct: 8 EKPYSCAECKETFSDNNRLVQH 29
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 0.001
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 142 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
G K + C C K FS S+L H R H
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVH 35
Score = 27.9 bits (63), Expect = 0.68
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 126
E+ +KC++C K F S+++ H H +K
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQ-RVHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 1.7
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 293
G + K Y+C C K F+ ++ H R H E +
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQR-VHTGEKPSGPS 44
Score = 26.0 bits (58), Expect = 3.5
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
+ +K YKC +C + + +L+ H ++H G K
Sbjct: 6 SGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 25.6 bits (57), Expect = 5.0
Identities = 12/38 (31%), Positives = 13/38 (34%), Gaps = 2/38 (5%)
Query: 229 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCS 264
E +KC C K FS H R H K S
Sbjct: 7 GMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS 44
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.5 bits (83), Expect = 0.001
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
+ G K + C +C K F+ S+L+ H R H
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIH 35
Score = 27.5 bits (62), Expect = 1.0
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 126
E+ +KC C K F S++ H H +K
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHW-RIHTGEKPSGP 43
Score = 27.5 bits (62), Expect = 1.1
Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 229 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSE 265
+ E +KC +C KVF+ H R H K S
Sbjct: 7 GSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSS 45
Score = 26.3 bits (59), Expect = 2.7
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
+ +K YKC C +++ +L H ++H G K
Sbjct: 6 SGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 26.3 bits (59), Expect = 2.9
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 293
G + + K Y+C+EC K F + H+R H E +
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWR-IHTGEKPSGPS 44
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 35.6 bits (83), Expect = 0.001
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 142 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
G K + C +C K FS S LS+H + H
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIH 35
Score = 26.7 bits (60), Expect = 1.8
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 126
E+++KC C K F S + +H H +K
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQ-KIHTGEKPSGP 43
Score = 26.3 bits (59), Expect = 2.2
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 293
G + K Y+C+EC K F+ + QH + H E +
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQK-IHTGEKPSGPS 44
Score = 26.3 bits (59), Expect = 2.8
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
+ +K+YKC C +++ L H K+H G K
Sbjct: 6 SGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 25.2 bits (56), Expect = 5.8
Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 229 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCS 264
E +KC +C KVFS + H + H K S
Sbjct: 7 GTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 24.8 bits (55), Expect = 8.5
Identities = 12/45 (26%), Positives = 14/45 (31%), Gaps = 3/45 (6%)
Query: 278 QHFRNYHNKEDAYVCNYCYDSFETKSTLVDH-FFHHG-NPYMCNH 320
+ E Y CN C F S L H H G P +
Sbjct: 2 SSGSS-GTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSS 45
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 0.001
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
+ G K + C +C K F+ S+L++H H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIH 35
Score = 25.9 bits (58), Expect = 3.0
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 126
E+ +KC C K F S++ RH H +K
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHR-GIHTGEKPSGP 43
Score = 25.2 bits (56), Expect = 6.8
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
+ +K YKC C +++ +L H +H G K
Sbjct: 6 SGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 24.8 bits (55), Expect = 7.8
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 293
G + K Y+C+EC K F + +H H E +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRG-IHTGEKPSGPS 44
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 0.001
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
+ G K + C +C K F+ S+L++H H
Sbjct: 2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIH 35
Score = 26.3 bits (59), Expect = 2.3
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 126
++ +KC C K F S++ RH H +K
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHR-GIHTGEKPSGP 43
Score = 25.2 bits (56), Expect = 7.3
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
+ +K YKC C +++ +L H +H G K
Sbjct: 6 SGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 24.8 bits (55), Expect = 7.9
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 293
G + K Y+C+EC K F + +H H E +
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRG-IHTGEKPSGPS 44
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.5 bits (83), Expect = 0.001
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
+ G K + C +C K F S+L++H H
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIH 35
Score = 27.1 bits (61), Expect = 1.3
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 126
E+ +KC C K F S++ RH H +K
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQ-LIHTGEKPSGP 43
Score = 25.9 bits (58), Expect = 3.5
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 293
G + K Y+C EC K F + +H H E +
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQL-IHTGEKPSGPS 44
Score = 25.5 bits (57), Expect = 5.1
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
+ +K YKC C +++R +L H +H G K
Sbjct: 6 SGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 35.2 bits (82), Expect = 0.001
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 142 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
K + C +C KAF+ +L++H + H
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIH 35
Score = 24.8 bits (55), Expect = 7.3
Identities = 8/39 (20%), Positives = 15/39 (38%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCA 155
+ K Y C C + + ++L H K+H +
Sbjct: 6 SGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSSG 44
Score = 24.8 bits (55), Expect = 8.0
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRH 113
+ + C C K+F ++ RH
Sbjct: 10 SKSYNCNECGKAFTRIFHLTRH 31
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 0.001
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 142 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
G K + C C KAF + S+L +H H
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVH 35
Score = 27.5 bits (62), Expect = 1.1
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 293
G + K Y+C C K F + QH H+ E +
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHS-VHSGERPSGPS 44
Score = 26.3 bits (59), Expect = 2.1
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
+ +K YKC++C + +R +L H +H G +
Sbjct: 6 SGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 25.9 bits (58), Expect = 3.4
Identities = 9/35 (25%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 126
E+ +KC++C K+F S++ +H + H ++
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHH-SVHSGERPSGP 43
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 0.001
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 142 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
G + C +C K+F ++L +H R H
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIH 35
Score = 27.1 bits (61), Expect = 1.1
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 126
ER KC C KSF +++ +H H +K
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQ-RIHTGEKPSGP 43
Score = 25.5 bits (57), Expect = 5.4
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 253 HGRAH--AKFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 293
G + + ++C+EC K F + QH R H E +
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQR-IHTGEKPSGPS 44
Score = 25.2 bits (56), Expect = 6.2
Identities = 8/38 (21%), Positives = 17/38 (44%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
+ ++ +KC C + + +L H ++H G K
Sbjct: 6 SGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 24.8 bits (55), Expect = 8.9
Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 284 HNKEDAYVCNYCYDSFETKSTLVDH-FFHHG-NPYMCNH 320
E + CN C SF + L+ H H G P +
Sbjct: 7 GTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSS 45
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 0.002
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
+ G K + C +C K F +L++H R H
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVH 35
Score = 27.9 bits (63), Expect = 0.72
Identities = 9/40 (22%), Positives = 19/40 (47%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQ 156
+ +K Y+CK C + + +L H ++H G + +
Sbjct: 6 SGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPSS 45
Score = 27.1 bits (61), Expect = 1.2
Identities = 6/36 (16%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCK 127
++ ++C+ C K+F ++ +H H ++
Sbjct: 10 KKPYECKECRKTFIQIGHLNQHK-RVHTGERSSGPS 44
Score = 26.3 bits (59), Expect = 2.7
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 229 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSE 265
+ + ++CK+C K F + H R H + S
Sbjct: 7 GSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPSS 45
Score = 26.0 bits (58), Expect = 3.8
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 293
G + + K Y C EC K F + QH R H E + +
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKR-VHTGERSSGPS 44
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 35.3 bits (81), Expect = 0.002
Identities = 9/43 (20%), Positives = 22/43 (51%)
Query: 115 AATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQC 157
++ +K+ C++C +++R ++L H H G K ++
Sbjct: 4 GSSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 33.0 bits (75), Expect = 0.012
Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 84 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCA 130
+ ++ CE+C K F ++ RH +H +K Y +
Sbjct: 2 SSGSSGRTRKQVACEICGKIFRDVYHLNRHK-LSHSGEKPYSSGPSS 47
Score = 29.9 bits (67), Expect = 0.13
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 377 KCRYCQRMFRNEDKLTAHELSHTMEKTF 404
C C ++FR+ L H+LSH+ EK +
Sbjct: 14 ACEICGKIFRDVYHLNRHKLSHSGEKPY 41
Score = 29.5 bits (66), Expect = 0.21
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 146 HKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
+ K C C K F +L++H H
Sbjct: 7 GRTRKQVACEICGKIFRDVYHLNRHKLSH 35
Score = 26.4 bits (58), Expect = 2.5
Identities = 9/42 (21%), Positives = 13/42 (30%), Gaps = 1/42 (2%)
Query: 254 GRAHAKFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYC 295
K C C K F + +H + H+ E Y
Sbjct: 6 SGRTRKQVACEICGKIFRDVYHLNRHKLS-HSGEKPYSSGPS 46
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 0.002
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
+ G K + C +C K F+ S+L++H R H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVH 35
Score = 25.6 bits (57), Expect = 4.0
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 126
E+ +KC C K F S++ RH H K
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHR-RVHTGGKPSGP 43
Score = 25.6 bits (57), Expect = 4.7
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
+ +K YKC C +++ +L H ++H G K
Sbjct: 6 SGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 25.2 bits (56), Expect = 6.2
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 293
G + K Y+C+EC K F + +H R H +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRR-VHTGGKPSGPS 44
Score = 24.8 bits (55), Expect = 9.4
Identities = 12/39 (30%), Positives = 13/39 (33%), Gaps = 2/39 (5%)
Query: 284 HNKEDAYVCNYCYDSFETKSTLVDHF-FHHG-NPYMCNH 320
E Y CN C F S L H H G P +
Sbjct: 7 GTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSS 45
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 34.8 bits (81), Expect = 0.002
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVR 172
+ G K + C +C KAF ++L +H R
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWR 33
Score = 32.9 bits (76), Expect = 0.010
Identities = 8/35 (22%), Positives = 17/35 (48%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 126
++ ++C C K+F +++ RH H +K
Sbjct: 10 KKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 32.2 bits (74), Expect = 0.020
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 293
G + K Y C EC K F + +H+R YH E +
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 26.0 bits (58), Expect = 3.9
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 284 HNKEDAYVCNYCYDSFETKSTLVDH--FFHHGN-PYMCN 319
+ Y C C +F ++L+ H ++H G P +
Sbjct: 7 GTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 0.002
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 142 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
G + + C +C K F S+L +H++ H
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRH 35
Score = 29.0 bits (66), Expect = 0.27
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 126
ER + C C K+F S++ H+ H +K
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEHL-KRHFREKSSGP 43
Score = 27.9 bits (63), Expect = 0.65
Identities = 9/39 (23%), Positives = 16/39 (41%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCA 155
+ ++ Y C C + + +L HLK H K +
Sbjct: 6 SGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPS 44
Score = 25.2 bits (56), Expect = 6.2
Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 293
G + + + Y C+EC K F + +H + H +E + +
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKR-HFREKSSGPS 44
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 34.8 bits (81), Expect = 0.002
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 144 KMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
G + C++C KAF+ K L H R H
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRTH 33
Score = 27.1 bits (61), Expect = 1.1
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 126
E ++C C K+F+ K + H TH +
Sbjct: 8 ENPYECSECGKAFNRKDQLISHQ-RTHAGESGPSS 41
Score = 25.6 bits (57), Expect = 4.7
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
+ Y+C C + + K L +H + H G +
Sbjct: 4 GSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 24.4 bits (54), Expect = 9.6
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 281 RNYHNKEDAYVCNYCYDSFETKSTLVDH-FFHHG-NPYMC 318
+ + E+ Y C+ C +F K L+ H H G +
Sbjct: 2 SSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 0.003
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 142 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
G K + C++C KAF ++L++H R H
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIH 35
Score = 26.7 bits (60), Expect = 1.9
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 126
E+ +KC C K+F +++ H H +
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHR-RIHTGYRPSGP 43
Score = 26.3 bits (59), Expect = 2.3
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 293
G + + K Y+CSEC K F + +H R H +
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRR-IHTGYRPSGPS 44
Score = 25.9 bits (58), Expect = 3.7
Identities = 9/40 (22%), Positives = 18/40 (45%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQ 156
+ +K YKC C + + +L H ++H G + +
Sbjct: 6 SGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSS 45
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 34.1 bits (79), Expect = 0.004
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 146 HKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
G +++ C +C K+F K +L+ H R H
Sbjct: 5 SSGQRVYECQECGKSFRQKGSLTLHERIH 33
Score = 26.0 bits (58), Expect = 2.9
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRH 113
+R ++C+ C KSF K ++ H
Sbjct: 8 QRVYECQECGKSFRQKGSLTLH 29
Score = 25.2 bits (56), Expect = 5.4
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 121 QKKYKCKLCARMYRYKWNLKAHLKMHKGPK 150
Q+ Y+C+ C + +R K +L H ++H G
Sbjct: 8 QRVYECQECGKSFRQKGSLTLHERIHTGSG 37
Score = 24.8 bits (55), Expect = 7.6
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 377 KCRYCQRMFRNEDKLTAHELSHTMEK 402
+C+ C + FR + LT HE HT
Sbjct: 12 ECQECGKSFRQKGSLTLHERIHTGSG 37
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 33.0 bits (76), Expect = 0.009
Identities = 12/36 (33%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 141 AHLKMHKGPKIFTCAQ--CDKAFSLKSNLSKHVRHH 174
+ G K F C C FS LS+H R H
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSH 37
Score = 27.3 bits (61), Expect = 1.2
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 5/45 (11%)
Query: 253 HGRAHA--KFYRCSE--CEKRFATEDIMRQHFRNYHNKEDAYVCN 293
G + K + C+ C RF+ D + +H R+ H+ +
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRS-HSGVKPSGPS 46
Score = 26.5 bits (59), Expect = 2.2
Identities = 9/37 (24%), Positives = 12/37 (32%), Gaps = 3/37 (8%)
Query: 92 ERKFKC--EMCPKSFDHKSNIRRHMAATHDLQKKYKC 126
E+ F C C F + RH +H K
Sbjct: 10 EKPFACTWPGCGWRFSRSDELSRHR-RSHSGVKPSGP 45
>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc
finger, gene regulation; NMR {Agrobacterium tumefaciens}
Length = 87
Score = 33.3 bits (76), Expect = 0.019
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 13/70 (18%)
Query: 78 EQEQQIPAQG--KSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRY 135
E+Q PA KS+Q+ C C SF +++RH+ H + YR
Sbjct: 3 NVEKQKPAVSVRKSVQDDHIVCLECGGSF---KSLKRHLTTHHSMT--------PEEYRE 51
Query: 136 KWNLKAHLKM 145
KW+L M
Sbjct: 52 KWDLPVDYPM 61
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 33.2 bits (75), Expect = 0.033
Identities = 12/71 (16%), Positives = 22/71 (30%), Gaps = 4/71 (5%)
Query: 108 SNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKM-HKGPK---IFTCAQCDKAFSL 163
+ H ++ Y+CK C H+ H + C +C+
Sbjct: 3 HHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKR 62
Query: 164 KSNLSKHVRHH 174
LS+H +
Sbjct: 63 YDALSEHNLKY 73
Score = 33.2 bits (75), Expect = 0.035
Identities = 11/69 (15%), Positives = 21/69 (30%), Gaps = 3/69 (4%)
Query: 243 VFSDEIKFHLHGRAHAKFYRCSECEKRFATEDIMRQHFRNYH---NKEDAYVCNYCYDSF 299
+ + + Y C C + ++ H + H +YVC C
Sbjct: 1 MAHHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLT 60
Query: 300 ETKSTLVDH 308
+ L +H
Sbjct: 61 KRYDALSEH 69
Score = 29.7 bits (66), Expect = 0.57
Identities = 17/84 (20%), Positives = 30/84 (35%), Gaps = 5/84 (5%)
Query: 327 DEKNLRNHECTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFR 386
N +N + + C +C + H++S VL + C C + +
Sbjct: 6 HHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSE----HPNVVLNSSYVCVECNFLTK 61
Query: 387 NEDKLTAHEL-SHTMEKTFYRNVA 409
D L+ H L H E+ F +
Sbjct: 62 RYDALSEHNLKYHPGEENFKLTMV 85
Score = 29.4 bits (65), Expect = 0.63
Identities = 15/90 (16%), Positives = 24/90 (26%), Gaps = 23/90 (25%)
Query: 204 RRFKCPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHAKFYRC 263
++C C H+D +H + L Y C
Sbjct: 17 GGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSS-----------------------YVC 53
Query: 264 SECEKRFATEDIMRQHFRNYHNKEDAYVCN 293
EC D + +H YH E+ +
Sbjct: 54 VECNFLTKRYDALSEHNLKYHPGEENFKLT 83
Score = 29.0 bits (64), Expect = 1.1
Identities = 17/79 (21%), Positives = 26/79 (32%), Gaps = 4/79 (5%)
Query: 80 EQQIPAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATH---DLQKKYKCKLCARMYRYK 136
Q E ++C+ C + H+ + H L Y C C + +
Sbjct: 4 HHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRY 63
Query: 137 WNLKAH-LKMHKGPKIFTC 154
L H LK H G + F
Sbjct: 64 DALSEHNLKYHPGEENFKL 82
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 35.6 bits (81), Expect = 0.034
Identities = 6/35 (17%), Positives = 8/35 (22%)
Query: 140 KAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
+ C C +L HV H
Sbjct: 169 VGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 33.3 bits (75), Expect = 0.16
Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 1/63 (1%)
Query: 341 TCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSHTM 400
P R + + + + L PT + Q C C + + L AH SH +
Sbjct: 147 QKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQ-CHVCSAVLFSPLDLDAHVASHGL 205
Query: 401 EKT 403
Sbjct: 206 HGN 208
Score = 32.1 bits (72), Expect = 0.46
Identities = 13/117 (11%), Positives = 31/117 (26%), Gaps = 1/117 (0%)
Query: 30 MGNPKHQDTKQYPAFRNGSFYIRADIEQPKVKVEHETIMSYARRQVEYEQEQQIPAQGKS 89
G+ ++ ++ + D ++ K +V + ++
Sbjct: 88 RGDLVNEHSEAKDEADEATQKQAKDTDKSKAQVTYSDTGINNANELSRSGNVDNEGGSNQ 147
Query: 90 IQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMH 146
E T Y+C +C+ + +L AH+ H
Sbjct: 148 KPMSTRIAEATSAIVSKHPARVGL-PPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 31.4 bits (70), Expect = 0.71
Identities = 4/34 (11%), Positives = 12/34 (35%)
Query: 261 YRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNY 294
Y+C C + + H ++ + + +
Sbjct: 181 YQCHVCSAVLFSPLDLDAHVASHGLHGNMTLTSS 214
Score = 30.2 bits (67), Expect = 1.5
Identities = 6/31 (19%), Positives = 11/31 (35%)
Query: 2 TLKTYTCDFCSAAFALKHSIADHIQTEHMGN 32
+ Y C CSA + H+ + +
Sbjct: 177 SGHGYQCHVCSAVLFSPLDLDAHVASHGLHG 207
Score = 29.8 bits (66), Expect = 2.3
Identities = 9/73 (12%), Positives = 24/73 (32%), Gaps = 6/73 (8%)
Query: 191 DEVLEEHVKSHQNRRFKCPCCERIFTSETRMRNHIDM------KHADENLFKCKKCLKVF 244
+E+ ++ + P RI + + + + + + ++C C V
Sbjct: 131 NELSRSGNVDNEGGSNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVL 190
Query: 245 SDEIKFHLHGRAH 257
+ H +H
Sbjct: 191 FSPLDLDAHVASH 203
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.2 bits (77), Expect = 0.035
Identities = 9/21 (42%), Positives = 13/21 (61%), Gaps = 3/21 (14%)
Query: 2 TLKTYTCDFCSA-AFALKHSI 21
+LK Y D SA A A+K ++
Sbjct: 28 SLKLYADD--SAPALAIKATM 46
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle;
NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Length = 192
Score = 33.8 bits (77), Expect = 0.053
Identities = 15/132 (11%), Positives = 39/132 (29%), Gaps = 7/132 (5%)
Query: 262 RCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHFFHHGNPYMCNHC 321
+C C+K + ++ ++H ++C C + ++ + H Y C C
Sbjct: 9 KCGVCQKAVYFAEEVQCEGSSFHKSC--FLCMVCKKNLDSTT----VAVHGDEIY-CKSC 61
Query: 322 FLMFPDEKNLRNHECTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYC 381
+ K + + + + H + + + C C
Sbjct: 62 YGKKYGPKGKGKGMGAGTLSTDKGESLGIKYEEGQSHRPTNPNASRMAQKVGGSDGCPRC 121
Query: 382 QRMFRNEDKLTA 393
+ +K+
Sbjct: 122 GQAVYAAEKVIG 133
Score = 28.8 bits (64), Expect = 2.4
Identities = 21/151 (13%), Positives = 36/151 (23%), Gaps = 21/151 (13%)
Query: 152 FTCAQCDKAFSLKSNLSKH-----VRHHMENVKQCKICLEIFEDDEVLEEHVKSHQNRRF 206
F C C K + + + + S
Sbjct: 35 FLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMG-------AGTLSTDKGES 87
Query: 207 KCPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRA-HAKFYRCSE 265
E + N M C +C + K G++ H +RC++
Sbjct: 88 LGIKYEEGQSHRPTNPNASRMAQKVGGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAK 147
Query: 266 CEKRFATEDIMRQHFRNYHNKEDAYVCNYCY 296
C K + +K+ C CY
Sbjct: 148 CGKSLEST--------TLADKDGEIYCKGCY 170
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 30.6 bits (68), Expect = 0.072
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 146 HKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENVK 179
+ K F C +C+K FS L++H R H VK
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVK 40
Score = 25.2 bits (54), Expect = 7.3
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 254 GRAHAKFYRCSECEKRFATEDIMRQHFR 281
K ++C++CEK F+ + QH R
Sbjct: 6 SGQKEKCFKCNKCEKTFSCSKYLTQHER 33
Score = 24.8 bits (53), Expect = 9.7
Identities = 12/31 (38%), Positives = 13/31 (41%)
Query: 229 HADENLFKCKKCLKVFSDEIKFHLHGRAHAK 259
E FKC KC K FS H R H +
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIHTR 37
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 31.8 bits (71), Expect = 0.089
Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Query: 91 QERKFKCEMCPKSFDHKS--NIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKM 145
+ + C C K+ +++HM LQ KC+ C + ++ K L H
Sbjct: 21 ERGEAVCPTC-NVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMA 76
Score = 31.1 bits (69), Expect = 0.17
Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 201 HQNRRFKCP-CCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRA 256
H+ CP C + ++ H+++ ++ KC+ C K F + + H A
Sbjct: 20 HERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMA 76
Score = 30.7 bits (68), Expect = 0.23
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 121 QKKYKCKLCARMYRYKW-NLKAHLKM-HKGPKIFTCAQCDKAFSLKSNLSKHVR 172
+ + C C + R LK H+++ K C C K F K+ L+ H
Sbjct: 22 RGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTM 75
Score = 27.6 bits (60), Expect = 3.2
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Query: 340 FTCPFCQR-KYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELS 397
CP C K L+KH+E C +L KC++C++ F+++ L H ++
Sbjct: 25 AVCPTCNVVTRKTLVGLKKHMEVCQKLQDA-------LKCQHCRKQFKSKAGLNYHTMA 76
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 34.0 bits (77), Expect = 0.12
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 255 RAHAKFYRCSECEKRFATEDIMRQHFRNYHNKEDA 289
+ Y C+ C RF+T + +H R+ H + +
Sbjct: 111 IVNPSSYVCNVCNARFSTMSALSEHLRSDHRDDAS 145
Score = 30.9 bits (69), Expect = 0.96
Identities = 7/26 (26%), Positives = 19/26 (73%)
Query: 4 KTYTCDFCSAAFALKHSIADHIQTEH 29
+Y C+ C+A F+ ++++H++++H
Sbjct: 115 SSYVCNVCNARFSTMSALSEHLRSDH 140
Score = 29.8 bits (66), Expect = 2.1
Identities = 7/43 (16%), Positives = 14/43 (32%)
Query: 78 EQEQQIPAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDL 120
+ Q + + C +C F S + H+ + H
Sbjct: 100 VSDPQSMKVTPIVNPSSYVCNVCNARFSTMSALSEHLRSDHRD 142
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain,
ablim2, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: g.39.1.3 g.39.1.3
Length = 81
Score = 30.5 bits (69), Expect = 0.16
Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 7/60 (11%)
Query: 262 RCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHFFHHGNPYMCNHC 321
RC C++ +++ + YH D +VC C F D +G MC C
Sbjct: 17 RCFSCDQFI-EGEVVSALGKTYH--PDCFVCAVCRLPFPPG----DRVTFNGKECMCQKC 69
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 29.2 bits (66), Expect = 0.19
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 377 KCRYCQRMFRNEDKLTAHELSHTMEK 402
C C R F ++ L H SHT EK
Sbjct: 4 VCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 24.6 bits (54), Expect = 7.5
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 150 KIFTCAQCDKAFSLKSNLSKHVRHH 174
+ F C C +AF+ + +L +H R H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH 25
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion,
acrosom; 2.62A {Homo sapiens}
Length = 126
Score = 31.2 bits (71), Expect = 0.24
Identities = 24/120 (20%), Positives = 32/120 (26%), Gaps = 31/120 (25%)
Query: 236 KCKKCLKVFSDEIKFHLHGRA-HAKFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNY 294
+C C ++ + H K + C +C+ A E Y D VC
Sbjct: 5 RCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEI--------YVMVNDKPVCKP 56
Query: 295 CYDS-FETKSTLVDHFFHHGNPYMCNHCFLMFPDE------KNLRNHECTSCFTCPFCQR 347
CY C C E N H T CF C C +
Sbjct: 57 CYVKNHAVV---------------CQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSK 101
Score = 29.7 bits (67), Expect = 0.64
Identities = 13/99 (13%), Positives = 28/99 (28%), Gaps = 12/99 (12%)
Query: 235 FKCKKCLKVFSDEIKFHLHGRA------HAKF-YRCSECEKRFATEDI-MRQHFRNYHNK 286
F C C + + EI ++ + C C E + + ++H
Sbjct: 31 FCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAIDPEVQRVTYNNFSWHAS 90
Query: 287 EDAYVCNYCYDSFETKSTLVDHFFHHGNPYMCNHCFLMF 325
+ ++C+ C + G + C
Sbjct: 91 TECFLCSCCSKCLIGQK----FMPVEGMVFCSVECKKRM 125
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding
protein 1; B-tandem zipper, protein binding; 1.30A {Mus
musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB:
2dfy_X 2xjz_I 2xjy_B
Length = 188
Score = 31.9 bits (72), Expect = 0.26
Identities = 21/118 (17%), Positives = 37/118 (31%), Gaps = 23/118 (19%)
Query: 236 KCKKCLKVFSDEIKFHLHGRA-HAKFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNY 294
+C C +D + H++ +CS C+ + + + K +C
Sbjct: 7 RCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLG------DIGTSSYTKSGMILCRN 60
Query: 295 CYDSFETKSTLVDHFFHHGNPYMCNHCFLMFPDEKNLR----NHECTSCFTCPFCQRK 348
Y GN C+ C P + + N CFTC C+ +
Sbjct: 61 DYIRL------------FGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNR 106
Score = 30.7 bits (69), Expect = 0.53
Identities = 21/121 (17%), Positives = 31/121 (25%), Gaps = 18/121 (14%)
Query: 235 FKCKKCLKVFSDE-IKFHLHG----------RAHAKFYRCSECEKRF-ATEDIMRQHFRN 282
KC C D + R CS C + A+E +MR
Sbjct: 33 LKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNV 92
Query: 283 YHNKEDAYVCNYCYDSFETKSTLVDHFFHHGNPYMCNHCFLMFPDEKNLRNHECTSCFTC 342
YH + C+ C + D F + C H +L +
Sbjct: 93 YH--LKCFTCSTCRNRLVPG----DRFHYINGSLFCEHDRPTALINGHLNSGGSGGSGGS 146
Query: 343 P 343
Sbjct: 147 G 147
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family;
enzyme-substrate complex, protein binding,
transcription; HET: ALY MES; 2.00A {Archaeoglobus
fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Length = 253
Score = 32.1 bits (74), Expect = 0.28
Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 7/45 (15%)
Query: 251 HLHGRAHAKFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYC 295
LHG C +C + + + + NK + C C
Sbjct: 116 ELHGSMDK--LDCLDCHETYDWSEFVED-----FNKGEIPRCRKC 153
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue;
Zn-binding domain, rossmann fold domain; HET: MYK NAD;
2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Length = 290
Score = 32.2 bits (74), Expect = 0.29
Identities = 9/28 (32%), Positives = 9/28 (32%), Gaps = 2/28 (7%)
Query: 251 HLHGRAHAKFYRCSECEKRFATEDIMRQ 278
LHG C C K IM Q
Sbjct: 147 SLHGNVFE--AVCCTCNKIVKLNKIMLQ 172
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 28.2 bits (62), Expect = 0.39
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 146 HKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENV 178
G + F C C AF+ K+N ++H++ H + +
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDTL 34
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 28.3 bits (62), Expect = 0.42
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 150 KIFTCAQCDKAFSLKSNLSKHVRHH 174
K + C QC A ++K+NL+ H+R H
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKH 32
Score = 25.9 bits (56), Expect = 3.4
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 122 KKYKCKLCARMYRYKWNLKAHLKMHKGPK 150
K YKC C+ K NL HL+ H G K
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 402
Score = 31.8 bits (71), Expect = 0.47
Identities = 9/48 (18%), Positives = 18/48 (37%)
Query: 191 DEVLEEHVKSHQNRRFKCPCCERIFTSETRMRNHIDMKHADENLFKCK 238
+ + + CP C R F + + +H+ K +N K +
Sbjct: 278 EHSYCRGSLRSEAKGIYCPFCSRWFKTSSVFESHLVGKIHKKNESKRR 325
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 28.3 bits (62), Expect = 0.52
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 254 GRAHAKFYRCSECEKRFATEDIMRQHFRNYH 284
G + K Y C C RF +D M H R++
Sbjct: 4 GSSGEKPYSCPVCGLRFKRKDRMSYHVRSHD 34
Score = 28.0 bits (61), Expect = 0.72
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 146 HKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
G K ++C C F K +S HVR H
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSH 33
Score = 24.9 bits (53), Expect = 8.7
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 115 AATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKG 148
++ +K Y C +C ++ K + H++ H G
Sbjct: 2 SSGSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 29.5 bits (65), Expect = 0.67
Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 181 CKICLEI-FEDDEVLEEHVKSHQNRRFKCPCCERIFTSETRMRNHIDMKHAD 231
C C + + E L++H+++ + F C C + S M+ H+ H
Sbjct: 37 CPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMANHNS 88
Score = 29.1 bits (64), Expect = 0.88
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 121 QKKYKCKLCARM-YRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVR 172
+ C C + + LK H++ K +FTC C K + + HV
Sbjct: 32 KGSVSCPTCQAVGRKTIEGLKKHMENCKQE-MFTCHHCGKQLRSLAGMKYHVM 83
Score = 26.8 bits (58), Expect = 6.0
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 4/54 (7%)
Query: 235 FKCKKCLKVFS---DEIKFHLHGRAHAKFYRCSECEKRFATEDIMRQHFRNYHN 285
C C V + +K H+ + + C C K+ + M+ H HN
Sbjct: 35 VSCPTCQAVGRKTIEGLKKHM-ENCKQEMFTCHHCGKQLRSLAGMKYHVMANHN 87
Score = 26.0 bits (56), Expect = 9.7
Identities = 11/57 (19%), Positives = 18/57 (31%), Gaps = 3/57 (5%)
Query: 201 HQNRRFKCP-CCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRA 256
CP C + ++ H M++ + +F C C K H A
Sbjct: 30 VDKGSVSCPTCQAVGRKTIEGLKKH--MENCKQEMFTCHHCGKQLRSLAGMKYHVMA 84
>1m2k_A Silent information regulator 2; protein-ligand complex, gene
regulation; HET: APR; 1.47A {Archaeoglobus fulgidus}
SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A*
1ici_A*
Length = 249
Score = 30.2 bits (69), Expect = 0.97
Identities = 9/29 (31%), Positives = 11/29 (37%), Gaps = 2/29 (6%)
Query: 251 HLHGRAHAKFYRCSECEKRFATEDIMRQH 279
HLHG RC+ C F E +
Sbjct: 114 HLHGSLRV--VRCTSCNNSFEVESAPKIP 140
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 27.2 bits (60), Expect = 1.0
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 152 FTCAQCDKAFSLKSNLSKHVRHHMENVKQCK 182
F C +C K F +LSKH+ H ++ +
Sbjct: 3 FACPECPKRFMRSDHLSKHITLHELLGEERR 33
>3ucp_A UNDA; beta-barrel, C-type cytochrome, electron transport, C-type H
cell surface, transport protein; HET: HEC; 1.76A
{Shewanella SP} PDB: 3ufh_A* 3ufk_A*
Length = 874
Score = 30.8 bits (67), Expect = 1.1
Identities = 28/252 (11%), Positives = 57/252 (22%), Gaps = 25/252 (9%)
Query: 96 KCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCA 155
K +C S + + + ++ Y+ + + + + CA
Sbjct: 596 KLLICANSAELDPTMDAAIDCSNTEAPIYEVIVGSNKASFSADASNVTARSIVISEAKCA 655
Query: 156 QCDKAFSLKSNLSKHVRHHMENVKQCKICLEIFEDDEVLEEHVKSHQNRRFKCPCCERIF 215
C + S + C C + C
Sbjct: 656 NCHGEKADFSASHALTHAADKPDNSCGTC-----------HSAVPNTAVALADGSCVACH 704
Query: 216 TSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHAKFYRCSEC--EKRFATE 273
+ D + + S C+ C + + +
Sbjct: 705 NGAPAHSKKPFERGFDFKVMIHQIHADTRSVRRLTTDAATFPENPANCAACHDKGQLSLA 764
Query: 274 DIMRQHFRNYHNKE---DAYVCNYCYDSFETKSTLVDHFFHHGNPYMCNHCFLMFPDEKN 330
+ + E C C+ + T S ++ HF +G Y E
Sbjct: 765 TLGNKPAFLASTGEYSPTVAACASCHATTATDSAVIGHFETNGGVYNAAAGTYTPGSE-- 822
Query: 331 LRNHECTSCFTC 342
+C TC
Sbjct: 823 -------TCATC 827
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 27.5 bits (61), Expect = 1.2
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 147 KGPKIFTC--AQCDKAFSLKSNLSKHVRHHMEN 177
K F C C K F + N+ H++ H+E+
Sbjct: 14 MPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED 46
Score = 25.6 bits (56), Expect = 5.2
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 80 EQQIPAQGKSIQERKFKC--EMCPKSFDHKSNIRRHMAATH 118
I K + ++ F+C C K+F + NIR H+ TH
Sbjct: 4 RGSIDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHI-QTH 43
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1,
nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga
maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A*
2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A*
2h4h_A* 3jr3_A* 2h59_A*
Length = 246
Score = 29.8 bits (68), Expect = 1.4
Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 251 HLHGRAHAKFYRCSECEKRFATEDIMRQ 278
LHG Y C CEK++ ED++++
Sbjct: 114 ELHGNVEE--YYCVRCEKKYTVEDVIKK 139
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 37
Score = 26.8 bits (58), Expect = 1.5
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 204 RRFKCPCCERIFTSETRMRNHIDMKHAD 231
R + CP CE+ F+ + +++HI H +
Sbjct: 8 RSYSCPVCEKSFSEDRLIKSHIKTNHPE 35
Score = 25.2 bits (54), Expect = 5.8
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 4 KTYTCDFCSAAFALKHSIADHIQTEH 29
++Y+C C +F+ I HI+T H
Sbjct: 8 RSYSCPVCEKSFSEDRLIKSHIKTNH 33
Score = 24.8 bits (53), Expect = 8.3
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 256 AHAKFYRCSECEKRFATEDIMRQHFRNYH 284
+ + Y C CEK F+ + +++ H + H
Sbjct: 5 SSGRSYSCPVCEKSFSEDRLIKSHIKTNH 33
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 81
Score = 27.8 bits (62), Expect = 1.5
Identities = 8/62 (12%), Positives = 17/62 (27%), Gaps = 6/62 (9%)
Query: 236 KCKKCLKVFSDEIKFHLHGRAHAKFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYC 295
C C + + + H + + C C+ D + C C
Sbjct: 17 FCHGCSLLMTGPFMVAGEFKYHPECFACMSCKVIIEDGDAY------ALVQHATLYCGKC 70
Query: 296 YD 297
++
Sbjct: 71 HN 72
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 26.7 bits (58), Expect = 1.5
Identities = 10/29 (34%), Positives = 21/29 (72%)
Query: 122 KKYKCKLCARMYRYKWNLKAHLKMHKGPK 150
K + C+ C +++++K +L+AHL++H K
Sbjct: 8 KIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 26.4 bits (57), Expect = 2.1
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 150 KIFTCAQCDKAFSLKSNLSKHVRHH 174
KIFTC C+K F K +L H+R H
Sbjct: 8 KIFTCEYCNKVFKFKHSLQAHLRIH 32
Score = 25.6 bits (55), Expect = 3.7
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 3 LKTYTCDFCSAAFALKHSIADHIQT 27
K +TC++C+ F KHS+ H++
Sbjct: 7 GKIFTCEYCNKVFKFKHSLQAHLRI 31
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein,
helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis}
SCOP: g.37.1.4 g.37.1.4
Length = 127
Score = 28.8 bits (63), Expect = 1.6
Identities = 20/93 (21%), Positives = 33/93 (35%), Gaps = 7/93 (7%)
Query: 180 QCKICLEIFEDDEVLEEHVKS--HQN---RRFKCPCCERIFTSETRMRNHIDMKHADENL 234
QCK+C + + H +S H N R E ++ ++ ++
Sbjct: 34 QCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGEDRS 93
Query: 235 FKCKKCLKVFSDEI--KFHLHGRAHAKFYRCSE 265
C C FS + + H G+ H K R E
Sbjct: 94 KCCPVCNMTFSSPVVAESHYIGKTHIKNLRLRE 126
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 29.8 bits (66), Expect = 1.6
Identities = 4/49 (8%), Positives = 13/49 (26%)
Query: 126 CKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
+ + H + +G K + ++ +L +
Sbjct: 183 SEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLS 231
Score = 29.0 bits (64), Expect = 2.8
Identities = 10/55 (18%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 69 SYARRQVEYEQEQQIPAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKK 123
Y +R QE + + E++ + E + D+ ++R + + Q K
Sbjct: 185 DYMKRLHSMSQET--IHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQGK 237
Score = 28.2 bits (62), Expect = 4.2
Identities = 3/41 (7%), Positives = 14/41 (34%)
Query: 106 HKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMH 146
H + +K+ + + ++ +L+ + +
Sbjct: 191 HSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLS 231
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 26.4 bits (58), Expect = 1.7
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 152 FTCAQCDKAFSLKSNLSKHVRHHMEN 177
F C +C K F +L+ H+ H
Sbjct: 3 FACPECPKRFMRSDHLTLHILLHENK 28
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Length = 32
Score = 26.2 bits (57), Expect = 2.0
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 340 FTCPFCQRKYKIEKHLEKHIESCIQL 365
F CP C +++ L KHI++ +
Sbjct: 3 FACPACPKRFMRSDALSKHIKTAFIV 28
Score = 24.3 bits (52), Expect = 9.6
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 152 FTCAQCDKAFSLKSNLSKHVR 172
F C C K F LSKH++
Sbjct: 3 FACPACPKRFMRSDALSKHIK 23
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 26.4 bits (57), Expect = 2.1
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 122 KKYKCKLCARMYRYKWNLKAHLKMHKGPK 150
K +KC LC R K NLKAH+ H K
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI,
protein structure initiative, center for eukaryotic
structural genomics, CESG; NMR {Homo sapiens} SCOP:
g.37.1.4
Length = 124
Score = 28.5 bits (63), Expect = 2.2
Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 3/62 (4%)
Query: 220 RMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHAKFYRCSECEKRFATEDIMRQH 279
R R +D H + + + E L G +RC C + F ++ H
Sbjct: 13 RRRPDLDEIHRELRPQGSARPQPDPNAEFDPDLPGGGL---HRCLACARYFIDSTNLKTH 69
Query: 280 FR 281
FR
Sbjct: 70 FR 71
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein
ISL-1; protein-protein complex, LIM domain, Zn finger,
activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Length = 169
Score = 28.7 bits (64), Expect = 2.5
Identities = 19/98 (19%), Positives = 29/98 (29%), Gaps = 11/98 (11%)
Query: 206 FKCPCCERIFTSETRMRNHIDMKHAD-ENLF--KCKKCLKVFS-DEIKFHLHGRA-HAKF 260
KC C R D F KC C ++ H
Sbjct: 34 LKCSDCHVPLAERCFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHC 93
Query: 261 YRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDS 298
+ C C+++ AT D Y ++ VC Y++
Sbjct: 94 FACVVCKRQLATGDEF------YLMEDSRLVCKADYET 125
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
classical zinc finger, transcription; NMR {Homo sapiens}
Length = 30
Score = 25.9 bits (56), Expect = 2.6
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 377 KCRYCQRMFRNEDKLTAHELSHTMEK 402
C +CQR F + L H HT EK
Sbjct: 5 VCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 25.1 bits (54), Expect = 5.8
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 150 KIFTCAQCDKAFSLKSNLSKHVRHH 174
K + C C + F+ L +HVR H
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIH 26
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene,
transcription, developmental protein; 2.40A {Homo
sapiens} PDB: 2xjz_A
Length = 131
Score = 28.2 bits (63), Expect = 2.6
Identities = 22/121 (18%), Positives = 32/121 (26%), Gaps = 23/121 (19%)
Query: 233 NLFKCKKCLKVFSDEIKFHLHGRA-HAKFYRCSECEKRFATEDIMRQHFRNYHNKEDAYV 291
+L C C + D + H C C R + R + K +
Sbjct: 1 SLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLG------EVGRRLYYKLGRKL 54
Query: 292 CNYCYDSFETKSTLVDHFFHHGNPYMCNHC-FLMFPDEKNLR---NHECTSCFTCPFCQR 347
C Y G +C C + E +R CF C CQ+
Sbjct: 55 CRRDYLRL------------FGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQK 102
Query: 348 K 348
Sbjct: 103 H 103
>3k8k_A Alpha-amylase, SUSG; alpha8/BETA8 barrel, CBM, beta-sandwich,
membrane protein; 2.20A {Bacteroides thetaiotaomicron}
PDB: 3k8m_A* 3k8l_A*
Length = 669
Score = 29.3 bits (66), Expect = 2.9
Identities = 6/43 (13%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
Query: 39 KQYPAFRNGSFYIRADIEQPKVKVEHETIMSYARRQVEYEQEQ 81
YPA G+ + + + +++ I ++ + E+
Sbjct: 576 NTYPALAEGN-MTKHSVYNESQEKDYKPIAAWYM---TKDNEK 614
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue,
hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP:
c.31.1.5
Length = 235
Score = 28.3 bits (64), Expect = 3.7
Identities = 6/26 (23%), Positives = 10/26 (38%), Gaps = 2/26 (7%)
Query: 251 HLHGRAHAKFYRCSECEKRFATEDIM 276
H+HG RCS+ + +
Sbjct: 106 HMHGELLK--VRCSQSGQVLDWTGDV 129
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation,
transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus}
PDB: 1tbn_A 1tbo_A 2e73_A
Length = 674
Score = 28.8 bits (64), Expect = 4.2
Identities = 30/206 (14%), Positives = 57/206 (27%), Gaps = 34/206 (16%)
Query: 180 QCKICLEIFEDDEVLEEHVKSHQNRRFKCPCCERIFTSETRMRNHIDMKHADENLFKCKK 239
QC++C + H + H+ F CP ++ S+ H H + C
Sbjct: 67 QCQVCSFVV--------HKRCHEFVTFSCPGADKGPASDDPRSKHKFKIHTYSSPTFCDH 118
Query: 240 CLKVFSDEIKFHLHGRAHAKFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSF 299
C L+G H + +C C M H R N V + C
Sbjct: 119 C--------GSLLYGLIH-QGMKCDTCM--------MNVHKRCVMN-----VPSLCGTDH 156
Query: 300 ETKSTLVDHFFHHGNPYM----CNHCFLMFPDEKNLRNHECTSCFTCPFCQRKYKIEKHL 355
+ + H + + L+ D L + + K +
Sbjct: 157 TERRGRIYIQAHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTI 216
Query: 356 EKHIESCIQLNPTTTVLKTLQKCRYC 381
+ + + ++ + R
Sbjct: 217 KSSLNPEWNETFRFQLKESDKDRRLS 242
>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural
genomics, structural genomics consortium, SGC,
hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A*
Length = 355
Score = 28.6 bits (64), Expect = 4.2
Identities = 5/28 (17%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 251 HLHGRAHAKFYRCSECEKRFATEDIMRQ 278
LHG C++C+ ++ + ++
Sbjct: 131 ELHGNMFV--EECAKCKTQYVRDTVVGT 156
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken
structural genomics/proteomics initiative, RSGI, NPPSFA;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 72
Score = 26.2 bits (58), Expect = 4.5
Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 10/64 (15%)
Query: 236 KCKKCLK-VFSDEIKFHLHGRA-HAKFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 293
C C + V K G+ H + CS CE+ + R++ + A+ C
Sbjct: 7 GCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGS--------RSFVPDKGAHYCV 58
Query: 294 YCYD 297
CY+
Sbjct: 59 PCYE 62
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding
domain, structural genomics, struc genomics consortium,
SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}
Length = 318
Score = 28.5 bits (64), Expect = 4.7
Identities = 5/28 (17%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 251 HLHGRAHAKFYRCSECEKRFATEDIMRQ 278
LHG C++C+ ++ + ++
Sbjct: 131 ELHGNMFV--EECAKCKTQYVRDTVVGT 156
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium
rectale}
Length = 373
Score = 28.3 bits (63), Expect = 4.7
Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
Query: 170 HVRHHMENV--KQCKICLEIFEDDEVLEEHVKSHQNRRFKCPCCERIFTSETRMRNHIDM 227
H HH EN+ + KI + + + D+ + + N ++ FT E +
Sbjct: 7 HHHHHHENLYFQGMKIKVALLDKDKEYLDRLTGVFNTKYADKLEVYSFTDEKNAIESVKE 66
Query: 228 KHAD 231
D
Sbjct: 67 YRID 70
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 26
Score = 25.0 bits (54), Expect = 5.2
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 150 KIFTCAQCDKAFSLKSNLSKHVRHH 174
K + C +C K F S L+ H+RHH
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3;
intramolecular (fusion) protein-protein complex, protein
binding/transcription complex; NMR {Mus musculus}
Length = 182
Score = 27.6 bits (61), Expect = 5.3
Identities = 19/98 (19%), Positives = 29/98 (29%), Gaps = 11/98 (11%)
Query: 206 FKCPCCERIFTSETRMRNHIDMKHAD-ENLF--KCKKCLKVFS-DEIKFHLHGRA-HAKF 260
KC C R D F KC C ++ H
Sbjct: 88 LKCSDCHVPLAERCFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHC 147
Query: 261 YRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDS 298
+ C C+++ AT D Y ++ VC Y++
Sbjct: 148 FACVVCKRQLATGDEF------YLMEDSRLVCKADYET 179
Score = 27.2 bits (60), Expect = 7.7
Identities = 18/101 (17%), Positives = 32/101 (31%), Gaps = 22/101 (21%)
Query: 262 RCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHFFHHGNPYMCNHC 321
C+ C++ I++ R++H C+ C+ + F + Y +
Sbjct: 62 MCAGCDQHILDRFILKALDRHWH--SKCLKCSDCHVPLAER-----CFSRGESVYCKDDF 114
Query: 322 FLMF------------PDEKNLR---NHECTSCFTCPFCQR 347
F F P + R CF C C+R
Sbjct: 115 FKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKR 155
>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 43
Score = 25.6 bits (55), Expect = 5.3
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 261 YRCSECEKRFATEDIMRQHFRNYHN 285
+ C+EC+ RF+ E +++H H+
Sbjct: 11 FFCNECDCRFSEEASLKRHTLQTHS 35
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: g.39.1.3 g.39.1.3
Length = 73
Score = 26.2 bits (57), Expect = 5.8
Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 235 FKCKKCLKVFSDEIKFHLHGRAHAKFYRCSECEKRFATEDIMRQH 279
C +C ++F++ + +L G + + C + TED
Sbjct: 32 ALCVRCGQMFAEGEEMYLQG---SSIW-HPACRQAARTEDSGPSS 72
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein
of testis, proliferation potential-related protein,
protein P2P-R; NMR {Homo sapiens}
Length = 74
Score = 26.2 bits (58), Expect = 5.9
Identities = 11/57 (19%), Positives = 16/57 (28%), Gaps = 14/57 (24%)
Query: 180 QCKICLEIFED------------DEVLEEHVKSHQNRRFKCPCCERIFTSETRMRNH 224
C IC +I D DE + + CP C + S +
Sbjct: 17 LCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDE--HTCPTCHQNDVSPDALSGP 71
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 25.8 bits (57), Expect = 6.6
Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 10/64 (15%)
Query: 236 KCKKCLK-VFSDEIKFHLHGRA-HAKFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 293
C++C K + K G + H + C C++ T +++ K++ C
Sbjct: 7 GCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGT--------KSFIPKDNQNFCV 58
Query: 294 YCYD 297
CY+
Sbjct: 59 PCYE 62
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 27.3 bits (60), Expect = 6.7
Identities = 10/55 (18%), Positives = 16/55 (29%), Gaps = 10/55 (18%)
Query: 195 EEHVKSHQNRRFKCPCCERIFTSETRMRNHI-DMKHADENLFKCKKCLKVFSDEI 248
+ N CP C + + D + C C V SD++
Sbjct: 11 AGRRGPNLNIVLTCPEC------KVYPPKIVERFSEGD--VV-CALCGLVLSDKL 56
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Length = 66
Score = 25.7 bits (57), Expect = 6.7
Identities = 10/61 (16%), Positives = 22/61 (36%), Gaps = 8/61 (13%)
Query: 236 KCKKCLKVFSDEIKFHLHGRAHAKFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYC 295
C C + + + + H + + C++CEK F ++ ++ C
Sbjct: 7 ICGACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGH--------RHYERKGLAYCETH 58
Query: 296 Y 296
Y
Sbjct: 59 Y 59
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 24.8 bits (54), Expect = 7.3
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 259 KFYRCSECEKRFATEDIMRQHFRNYHN 285
K Y C C + F D++ +H + H+
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIHS 27
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent
deacetylase, sirtuin, substrate peptide comple
hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens}
PDB: 3gls_A 3glt_A* 3glu_A
Length = 285
Score = 27.7 bits (62), Expect = 7.9
Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 7/45 (15%)
Query: 251 HLHGRAHAKFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYC 295
HG + C+ C++ F EDI + C C
Sbjct: 132 EAHGTFAS--ATCTVCQRPFPGEDIRADVMA-----DRVPRCPVC 169
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 35
Score = 24.8 bits (53), Expect = 8.8
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 206 FKCPCCERIFTSETRMRNHIDMKHAD 231
+ C C + F S R+R+HI H
Sbjct: 8 YVCALCLKKFVSSIRLRSHIREVHGA 33
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1,
LIM domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Length = 101
Score = 26.2 bits (58), Expect = 8.8
Identities = 15/101 (14%), Positives = 26/101 (25%), Gaps = 24/101 (23%)
Query: 262 RCSECEKRFATEDIMRQHF-RNYHNKEDAYVCNYCYDSFETKSTLVDHFFHHGNPYMCNH 320
C EC K + + R +H + + C C ++ CN
Sbjct: 7 GCVECRKPIGADSKEVHYKNRFWH--DTCFRCAKCLHPLANET----FVAKDNKIL-CNK 59
Query: 321 CFLM-------------FPDEKNLR---NHECTSCFTCPFC 345
C ++N+ CF+ P
Sbjct: 60 CTTREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFSGPSS 100
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 74
Score = 25.5 bits (56), Expect = 8.9
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 165 SNLSKHVRHHMENVKQCKICLEIFEDDEVL 194
S+ S + + C +CLE F+ + L
Sbjct: 2 SSGSSGKVKELNLHELCAVCLEDFKPRDEL 31
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 80
Score = 25.8 bits (57), Expect = 9.1
Identities = 9/62 (14%), Positives = 23/62 (37%), Gaps = 8/62 (12%)
Query: 236 KCKKCLKVFSDEIKFHLHGRAHAKFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYC 295
+C +C K + + H + C+ C+ A + + ++++ C C
Sbjct: 17 RCARCSKTLTQGGVTYRDQPWHRECLVCTGCQTPLAGQ--------QFTSRDEDPYCVAC 68
Query: 296 YD 297
+
Sbjct: 69 FG 70
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.134 0.433
Gapped
Lambda K H
0.267 0.0544 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,354,672
Number of extensions: 373950
Number of successful extensions: 4056
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3473
Number of HSP's successfully gapped: 1271
Length of query: 420
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 324
Effective length of database: 4,021,377
Effective search space: 1302926148
Effective search space used: 1302926148
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 59 (26.9 bits)