RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3231
(420 letters)
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 40.7 bits (96), Expect = 6e-06
Identities = 8/37 (21%), Positives = 19/37 (51%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKL 128
+ + C+ C K F ++ H+ H ++ +KC++
Sbjct: 3 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 39
Score = 32.3 bits (74), Expect = 0.006
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 258 AKFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 293
K Y C C K F+ D + H + H E + C
Sbjct: 3 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 38
Score = 31.1 bits (71), Expect = 0.015
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 150 KIFTCAQCDKAFSLKSNLSKHVR--HHMENVKQCKI 183
K + C C K FS +L+ H++ H E +C++
Sbjct: 4 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 39
Score = 28.8 bits (65), Expect = 0.095
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 122 KKYKCKLCARMYRYKWNLKAHLKM-HKGPKIFTC 154
K Y C+ C + + +L H+K H + C
Sbjct: 4 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 37
Score = 26.1 bits (58), Expect = 0.83
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 4 KTYTCDFCSAAFALKHSIADHIQTEHMG 31
K Y C C F+ + HI+ H
Sbjct: 4 KPYICQSCGKGFSRPDHLNGHIKQVHTS 31
Score = 26.1 bits (58), Expect = 0.84
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 204 RRFKCPCCERIFTSETRMRNHIDMKHADENLFKCK 238
+ + C C + F+ + HI H E KC+
Sbjct: 4 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 38
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 40.4 bits (94), Expect = 1e-05
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 122 KKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
K Y C+ C + + +K H+ MH G + + C C K F +K +L H++ H
Sbjct: 2 KLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53
Score = 36.6 bits (84), Expect = 3e-04
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMH 146
++ + C+ C KSF HKS RHM+ + Y C +C + ++ K +L H+K+H
Sbjct: 1 DKLYPCQ-CGKSFTHKSQRDRHMSMHLG-LRPYGCGVCGKKFKMKHHLVGHMKIH 53
Score = 30.4 bits (68), Expect = 0.043
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 150 KIFTCAQCDKAFSLKSNLSKHVRHHM-ENVKQCKICLEIFEDDEVLEEHVKSH 201
K++ C QC K+F+ KS +H+ H+ C +C + F+ L H+K H
Sbjct: 2 KLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53
Score = 26.6 bits (58), Expect = 0.90
Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 259 KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHFFHH 312
K Y C +C K F + +H + Y C C F+ K LV H H
Sbjct: 2 KLYPC-QCGKSFTHKSQRDRHMSMHLGLRP-YGCGVCGKKFKMKHHLVGHMKIH 53
Score = 25.0 bits (54), Expect = 3.2
Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 232 ENLFKCKKCLKVFSD--EIKFHLHGRAHAKFYRCSECEKRFATEDIMRQHFR 281
+ L+ C+ C K F+ + H+ + Y C C K+F + + H +
Sbjct: 1 DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK 51
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 38.4 bits (90), Expect = 4e-05
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 144 KMHKGPKIFTCAQCDKAFSLKSNLSKHV-RHHMENV 178
+ H G K + C C F+ + H+ + H ENV
Sbjct: 1 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENV 36
Score = 33.8 bits (78), Expect = 0.002
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATH 118
E+ ++C +C F ++ H+ H
Sbjct: 6 EKPYECYICHARFTQSGTMKMHILQKH 32
Score = 27.3 bits (61), Expect = 0.36
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 259 KFYRCSECEKRFATEDIMRQHFRNYHNKE 287
K Y C C RF M+ H H +
Sbjct: 7 KPYECYICHARFTQSGTMKMHILQKHTEN 35
Score = 25.7 bits (57), Expect = 1.1
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMH 146
TH +K Y+C +C + +K H+
Sbjct: 2 THSGEKPYECYICHARFTQSGTMKMHILQK 31
Score = 24.6 bits (54), Expect = 2.9
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 4 KTYTCDFCSAAFALKHSIADHIQTEHMGN 32
K Y C C A F ++ HI +H N
Sbjct: 7 KPYECYICHARFTQSGTMKMHILQKHTEN 35
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 37.2 bits (87), Expect = 9e-05
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 145 MHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
+H G K + C +C KAFS S L +H R H
Sbjct: 1 IHSGEKPYGCVECGKAFSRSSILVQHQRVH 30
Score = 30.7 bits (70), Expect = 0.019
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHM 114
E+ + C C K+F S + +H
Sbjct: 5 EKPYGCVECGKAFSRSSILVQHQ 27
Score = 28.4 bits (64), Expect = 0.12
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 118 HDLQKKYKCKLCARMYRYKWNLKAHLKMHKG 148
H +K Y C C + + L H ++H G
Sbjct: 2 HSGEKPYGCVECGKAFSRSSILVQHQRVHTG 32
Score = 25.3 bits (56), Expect = 1.5
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 259 KFYRCSECEKRFATEDIMRQHFR 281
K Y C EC K F+ I+ QH R
Sbjct: 6 KPYGCVECGKAFSRSSILVQHQR 28
Score = 23.7 bits (52), Expect = 6.0
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 229 HADENLFKCKKCLKVFSDEIKFHLHGRAH 257
H+ E + C +C K FS H R H
Sbjct: 2 HSGEKPYGCVECGKAFSRSSILVQHQRVH 30
Score = 23.3 bits (51), Expect = 7.7
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 284 HNKEDAYVCNYCYDSFETKSTLVDH 308
H+ E Y C C +F S LV H
Sbjct: 2 HSGEKPYGCVECGKAFSRSSILVQH 26
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 36.6 bits (85), Expect = 2e-04
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 142 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHM 175
+ G K F C CD++FS +L+ H + HM
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM 35
Score = 28.2 bits (63), Expect = 0.14
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHM 114
+ F+C C +SF ++ H
Sbjct: 9 IKPFQCPDCDRSFSRSDHLALHR 31
Score = 26.6 bits (59), Expect = 0.54
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMH 146
K ++C C R + +L H K H
Sbjct: 5 GSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 23.2 bits (50), Expect = 9.8
Identities = 7/31 (22%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFR 281
R K ++C +C++ F+ D + H +
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRK 32
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 36.2 bits (84), Expect = 3e-04
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 144 KMHKGPKIFTCAQCDKAFSLKSNLSKHVR-HHMEN 177
+ H G K + C+ CDK F K L H + +H N
Sbjct: 1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN 35
Score = 30.4 bits (69), Expect = 0.022
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHMAATHD 119
E+ + C C K+F K + H HD
Sbjct: 6 EKPYACSHCDKTFRQKQLLDMHFKRYHD 33
Score = 28.9 bits (65), Expect = 0.091
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPK 150
TH +K Y C C + +R K L H K + P
Sbjct: 2 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN 35
Score = 26.9 bits (60), Expect = 0.45
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 259 KFYRCSECEKRFATEDIMRQHFRNYHNK 286
K Y CS C+K F + ++ HF+ YH+
Sbjct: 7 KPYACSHCDKTFRQKQLLDMHFKRYHDP 34
Score = 24.2 bits (53), Expect = 3.9
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 284 HNKEDAYVCNYCYDSFETKSTLVDHFFHHGNP 315
H E Y C++C +F K L HF + +P
Sbjct: 3 HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP 34
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 33.0 bits (76), Expect = 0.002
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 150 KIFTCAQCDKAFSLKSNLSKHVRHH 174
K F C C + FS +L+ H+R H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTH 26
Score = 29.5 bits (67), Expect = 0.048
Identities = 5/23 (21%), Positives = 14/23 (60%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHM 114
++ F+C +C ++F ++ H+
Sbjct: 1 QKPFQCRICMRNFSRSDHLTTHI 23
Score = 27.2 bits (61), Expect = 0.26
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 121 QKKYKCKLCARMYRYKWNLKAHLKMHKG 148
QK ++C++C R + +L H++ H G
Sbjct: 1 QKPFQCRICMRNFSRSDHLTTHIRTHTG 28
Score = 24.5 bits (54), Expect = 2.9
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 259 KFYRCSECEKRFATEDIMRQHFR 281
K ++C C + F+ D + H R
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIR 24
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 32.6 bits (75), Expect = 0.004
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 150 KIFTCAQCDKAFSLKSNLSKHVRHH 174
+ F C C +AF+ + +L +H R H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH 25
Score = 28.0 bits (63), Expect = 0.15
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 93 RKFKCEMCPKSFDHKSNIRRHM 114
R F CE+C ++F + +++RH
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHY 22
Score = 28.0 bits (63), Expect = 0.15
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 122 KKYKCKLCARMYRYKWNLKAHLKMHKGPK 150
+ + C++C R + + +LK H + H K
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 25.3 bits (56), Expect = 1.5
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 377 KCRYCQRMFRNEDKLTAHELSHTMEK 402
C C R F ++ L H SHT EK
Sbjct: 4 VCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 23.7 bits (52), Expect = 4.5
Identities = 6/23 (26%), Positives = 15/23 (65%)
Query: 259 KFYRCSECEKRFATEDIMRQHFR 281
+ + C C + FA ++ +++H+R
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYR 23
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 35
Score = 32.8 bits (75), Expect = 0.004
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 146 HKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENV 178
G + F C C AF+ K+N ++H++ H + +
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDTL 34
Score = 26.6 bits (59), Expect = 0.47
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 118 HDLQKKYKCKLCARMYRYKWNLKAHLKMH 146
++ + C++C + K N HLK+H
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVH 30
Score = 26.6 bits (59), Expect = 0.56
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHM 114
+R F C +C +F K+N RH+
Sbjct: 5 KRPFVCRICLSAFTTKANCARHL 27
Score = 23.6 bits (51), Expect = 8.1
Identities = 5/27 (18%), Positives = 12/27 (44%)
Query: 259 KFYRCSECEKRFATEDIMRQHFRNYHN 285
+ + C C F T+ +H + + +
Sbjct: 6 RPFVCRICLSAFTTKANCARHLKVHTD 32
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 32.4 bits (74), Expect = 0.005
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 142 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
+ + + C +C K+FS S+LSKH R H
Sbjct: 3 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTH 35
Score = 28.2 bits (63), Expect = 0.15
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 112 RHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKG 148
R +++YKC C + + + +L H + H G
Sbjct: 2 RSEW-QQRERRRYKCDECGKSFSHSSDLSKHRRTHTG 37
Score = 25.5 bits (56), Expect = 1.4
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 92 ERKFKCEMCPKSFDHKSNIRRHM 114
R++KC+ C KSF H S++ +H
Sbjct: 10 RRRYKCDECGKSFSHSSDLSKHR 32
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 31.0 bits (71), Expect = 0.011
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 150 KIFTCAQCDKAFSLKSNLSKHVRHH 174
K + C +C KAFS S L H R H
Sbjct: 1 KPYKCLECGKAFSQNSGLINHQRIH 25
Score = 24.5 bits (54), Expect = 2.6
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 95 FKCEMCPKSFDHKSNIRRHM 114
+KC C K+F S + H
Sbjct: 3 YKCLECGKAFSQNSGLINHQ 22
Score = 24.1 bits (53), Expect = 4.3
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 122 KKYKCKLCARMYRYKWNLKAHLKMH 146
K YKC C + + L H ++H
Sbjct: 1 KPYKCLECGKAFSQNSGLINHQRIH 25
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 30.4 bits (69), Expect = 0.021
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 150 KIFTCAQCDKAFSLKSNLSKHVRHH 174
K F C +C K F +LSKH++ H
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIKTH 25
Score = 28.5 bits (64), Expect = 0.12
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 122 KKYKCKLCARMYRYKWNLKAHLKMHKGPK 150
KK+ C C + + +L H+K H+ K
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIKTHQNKK 29
Score = 26.2 bits (58), Expect = 0.82
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 95 FKCEMCPKSFDHKSNIRRHM 114
F C CPK F ++ +H+
Sbjct: 3 FACPECPKRFMRSDHLSKHI 22
Score = 24.2 bits (53), Expect = 3.5
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 377 KCRYCQRMFRNEDKLTAHELSHTMEK 402
C C + F D L+ H +H +K
Sbjct: 4 ACPECPKRFMRSDHLSKHIKTHQNKK 29
Score = 23.8 bits (52), Expect = 5.4
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 259 KFYRCSECEKRFATEDIMRQHFR 281
K + C EC KRF D + +H +
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIK 23
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 28.8 bits (65), Expect = 0.079
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 149 PKIFTCAQCDKAFSLKSNLSKHVRHH 174
P + T + C K F+ L +H R H
Sbjct: 2 PFMCTWSYCGKRFTRSDELQRHKRTH 27
Score = 23.4 bits (51), Expect = 7.1
Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 122 KKYKC--KLCARMYRYKWNLKAHLKMHKGPK 150
+ + C C + + L+ H + H G K
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 23.0 bits (50), Expect = 9.2
Identities = 8/24 (33%), Positives = 10/24 (41%), Gaps = 2/24 (8%)
Query: 93 RKFKC--EMCPKSFDHKSNIRRHM 114
R F C C K F ++RH
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHK 24
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 30
Score = 27.7 bits (62), Expect = 0.18
Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 150 KIFTCAQ--CDKAFSLKSNLSKHVRHH 174
K C C K++S NL H+R H
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHLRSH 27
Score = 23.4 bits (51), Expect = 6.8
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 122 KKYKCK--LCARMYRYKWNLKAHLKMHKG 148
K +KC C + Y NLK HL+ H G
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHLRSHTG 29
Score = 23.1 bits (50), Expect = 8.1
Identities = 8/24 (33%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
Query: 93 RKFKC--EMCPKSFDHKSNIRRHM 114
+ KC E C KS+ N++ H+
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHL 24
>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 53
Score = 28.4 bits (63), Expect = 0.20
Identities = 8/20 (40%), Positives = 9/20 (45%)
Query: 316 YMCNHCFLMFPDEKNLRNHE 335
C C +F D LR HE
Sbjct: 7 LPCGLCGKVFTDANRLRQHE 26
Score = 28.0 bits (62), Expect = 0.28
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 206 FKCPCCERIFTSETRMRNH 224
C C ++FT R+R H
Sbjct: 7 LPCGLCGKVFTDANRLRQH 25
Score = 25.7 bits (56), Expect = 2.0
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 151 IFTCAQCDKAFSLKSNLSKHVRHH 174
I C C K F+ + L +H H
Sbjct: 6 ILPCGLCGKVFTDANRLRQHEAQH 29
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 29
Score = 26.9 bits (60), Expect = 0.39
Identities = 9/27 (33%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 150 KIFTCAQ--CDKAFSLKSNLSKHVRHH 174
+ + C CD+ FS ++L++H+R H
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHIRIH 27
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 27.0 bits (60), Expect = 0.41
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 96 KCEMCPKSFDHKSNIRRHMAATHDLQKKYKCK 127
C KSF+ K +++ HM H + Y C+
Sbjct: 5 PEPACGKSFNFKKHLKEHM-KLHSDTRDYICE 35
Score = 26.2 bits (58), Expect = 0.79
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 153 TCAQCDKAFSLKSNLSKHVRHH 174
C K+F+ K +L +H++ H
Sbjct: 5 PEPACGKSFNFKKHLKEHMKLH 26
Score = 25.5 bits (56), Expect = 1.7
Identities = 9/33 (27%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 124 YKCK--LCARMYRYKWNLKAHLKMHKGPKIFTC 154
+ C C + + +K +LK H+K+H + + C
Sbjct: 2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYIC 34
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 32
Score = 26.5 bits (59), Expect = 0.65
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 150 KIFTCAQ--CDKAFSLKSNLSKHVRHH 174
+ ++C CDKAF +L +H + H
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKSH 28
Score = 23.8 bits (52), Expect = 4.7
Identities = 7/25 (28%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 92 ERKFKC--EMCPKSFDHKSNIRRHM 114
+R + C C K+F ++ RH
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHK 25
>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 47
Score = 26.8 bits (59), Expect = 0.70
Identities = 6/45 (13%), Positives = 23/45 (51%)
Query: 106 HKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPK 150
+ +I +++ D + C + ++ ++N+++H++ H +
Sbjct: 3 PRGSIDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 24.1 bits (52), Expect = 6.8
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 138 NLKAHLKMHKGPKIFTCAQCD--KAFSLKSNLSKHVRHH 174
++ ++K K F C K F + N+ H++ H
Sbjct: 6 SIDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQTH 43
>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 26.2 bits (58), Expect = 0.74
Identities = 14/27 (51%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 150 KIFTCAQ--CDKAFSLKSNLSKHVRHH 174
K F C C K FSL NL HVR H
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTHVRIH 27
>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 67
Score = 27.0 bits (60), Expect = 0.84
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 261 YRCSECEKRFATEDIMRQHFR 281
+RC C + F ++ HFR
Sbjct: 16 HRCLACARYFIDSTNLKTHFR 36
>d1h7ea_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid
(CMP-KDO)synthetase {Escherichia coli, KpsU [TaxId:
562]}
Length = 245
Score = 28.8 bits (63), Expect = 1.2
Identities = 14/185 (7%), Positives = 35/185 (18%), Gaps = 15/185 (8%)
Query: 182 KICLEIFEDDEVLEEHVKSHQNRRFKCPCCERIFTSETRMRNHIDMKHADENLFKCKKCL 241
+ L++ EV + + + I T +
Sbjct: 35 ERALQVAGVAEVWVATDDPRVEQAVQAFGGKAIMTRNDHESGTDRLVEVMHK-------- 86
Query: 242 KVFSDEIKFHLHGRAHAKFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFET 301
++ ++ + + + A +
Sbjct: 87 ------VEADIYINLQGDEPMIRPRDVETLLQGMRDDPALPVATLCHAISAAEAAEPSTV 140
Query: 302 KSTLVDHFFHHGNPYMCNHCFLMFPDEKNLRNHECTSCFTCPFCQRKYKIEKHLEKHIES 361
K + + L++ + E E+ ES
Sbjct: 141 KVVVNTRQDALYFSRSPIPYPRNAEKARYLKHVGIYAYRRDVLQNYSQLPESMPEQ-AES 199
Query: 362 CIQLN 366
QL
Sbjct: 200 LEQLR 204
>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 135
Score = 27.0 bits (59), Expect = 2.2
Identities = 6/84 (7%), Positives = 21/84 (25%), Gaps = 6/84 (7%)
Query: 114 MAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRH 173
+ + + ++ A+ + + + N + V
Sbjct: 57 VMGNLEFLIDNGIHAVVGTTGFTAERFQQVESW------LVAKPNTSVLIAPNFTSFVPG 110
Query: 174 HMENVKQCKICLEIFEDDEVLEEH 197
+ V++ + E L +
Sbjct: 111 VLLAVRRIAERPGLTVGLEPLLDL 134
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 26.6 bits (58), Expect = 2.3
Identities = 14/85 (16%), Positives = 33/85 (38%), Gaps = 11/85 (12%)
Query: 169 KHVRHHMENVKQCKICLEIFEDDEVLE----------EHVKSHQNRRFKCPCCERIFTSE 218
++V + M+ + +C ICLE+ ++ + + + + +CP C+ T
Sbjct: 12 QNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71
Query: 219 TRMRNHIDMKHADENLFKCKKCLKV 243
+ + E L K ++
Sbjct: 72 SLQESTR-FSQLVEELLKIICAFQL 95
>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 24.2 bits (53), Expect = 3.8
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 157 CDKAFSLKSNLSKHVRHH 174
C+K F+ +NL H+ H
Sbjct: 10 CNKKFAQSTNLKSHILTH 27
>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 37
Score = 24.3 bits (52), Expect = 3.9
Identities = 7/22 (31%), Positives = 15/22 (68%)
Query: 149 PKIFTCAQCDKAFSLKSNLSKH 170
P F C++C K F+ ++ +++H
Sbjct: 2 PAAFVCSKCGKTFTRRNTMARH 23
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa)
[TaxId: 4530]}
Length = 55
Score = 24.8 bits (54), Expect = 3.9
Identities = 10/41 (24%), Positives = 14/41 (34%), Gaps = 11/41 (26%)
Query: 175 MENVKQCKICLEIFEDDEVLEEHVKSHQNRRFKCPCCERIF 215
M++ +C +CL ED E P C F
Sbjct: 2 MDDGVECAVCLAELEDGEEA-----------RFLPRCGHGF 31
>d1z2la1 c.56.5.4 (A:4-212,A:330-413) Allantoate amidohydrolase AllC
catalytic domain {Escherichia coli [TaxId: 562]}
Length = 293
Score = 27.0 bits (59), Expect = 4.0
Identities = 14/132 (10%), Positives = 27/132 (20%)
Query: 271 ATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHFFHHGNPYMCNHCFLMFPDEKN 330
A + + Q+ E + F + F NP + +
Sbjct: 102 AIDWLKTQYGAPLRTVEVVAMAEEEGSRFPYVFWGSKNIFGLANPDDVRNICDAKGNSFV 161
Query: 331 LRNHECTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDK 390
C + I+ +E HIE L + + +
Sbjct: 162 DAMKACGFTLPNAPLTPRQDIKAFVELHIEQGCVLESNGQSIGVVNAIVPMNKELVATLT 221
Query: 391 LTAHELSHTMEK 402
Sbjct: 222 ELCEREKLNYRV 233
>d1ltka_ c.86.1.1 (A:) Phosphoglycerate kinase {Malaria parasite
(Plasmodium falciparum) [TaxId: 5833]}
Length = 417
Score = 27.4 bits (60), Expect = 4.0
Identities = 29/234 (12%), Positives = 61/234 (26%), Gaps = 23/234 (9%)
Query: 141 AHLKMHKGPKIFTCAQCDKAFSLK---SNLSKHVRHHMENVKQCKICLEIFEDDEVLEEH 197
+H G + ++ ++LK L + + + C + + E
Sbjct: 64 SHCGRPDGLR-------NEKYTLKPVAETLKGLLGEEVLFLNDCVGKEVEDKINAAKENS 116
Query: 198 VKSHQNRRFKCPCCERIFTSETRMRNHIDMKHADENLFKCK--KCLKVFSDEIK---FHL 252
V +N RF E N + D F+ K VF ++
Sbjct: 117 VILLENLRF---HIEEEGKGVDANGNKVKANKEDVEKFQNDLTKLADVFINDAFGTAHRA 173
Query: 253 HGRAHAKFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHFFHH 312
H E + + K L+ +
Sbjct: 174 HSSMVGVKLNVKASGFLMKKELEYFSKALENPQRPLLAIL--GGAKVSDKIQLIKNLLDK 231
Query: 313 GNPYMCNHCFLMFPDEKNLRNHECTSCFTCPFCQRKYK--IEKHLEKHIESCIQ 364
+ M + + +K L N + + + +EK K+++ +
Sbjct: 232 VD-RMIIGGGMAYTFKKVLNNMKIGTSLFDEAGSKIVGEIMEKAKAKNVQIFLP 284
>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 31
Score = 24.0 bits (52), Expect = 4.2
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 261 YRCSECEKRFATEDIMRQHFRNYHN 285
Y C C + F D++ +H + H+
Sbjct: 2 YPCGLCNRAFTRRDLLIRHAQKIHS 26
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase
8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 348
Score = 27.0 bits (58), Expect = 4.4
Identities = 23/221 (10%), Positives = 44/221 (19%), Gaps = 4/221 (1%)
Query: 96 KCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCA 155
K + + +L L + + + + + F A
Sbjct: 87 KDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAA 146
Query: 156 QCDKAFSLKSNLSKHVRHHMENVKQCKICLEIFEDDEVLEEHVKSHQNRRFKCPCCERIF 215
+ + N S V K CL ++ +
Sbjct: 147 EHAWQKHKQLNESIIVALFQGQFKSTVQCLT----CHKKSRTFEAFMYLSLPLASTSKCT 202
Query: 216 TSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHAKFYRCSECEKRFATEDI 275
+ + K D N F C C K + +
Sbjct: 203 LQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQK 262
Query: 276 MRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHFFHHGNPY 316
++ D + K L H+G
Sbjct: 263 LQTSVDFPLENLDLSQYVIGPKNNLKKYNLFSVSNHYGGLD 303
>d1fy7a_ d.108.1.1 (A:) Histone acetyltransferase ESA1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 273
Score = 27.1 bits (60), Expect = 4.4
Identities = 7/43 (16%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
Query: 325 FPDEKNLRNHECTSCFTCPFCQRKYKIEKHLEKHIESCIQLNP 367
+P E + + F + + +K E++ + C +P
Sbjct: 24 YPIE----LTDEDFIYIDDFTLQYFGSKKQYERYRKKCTLRHP 62
>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 35
Score = 24.3 bits (52), Expect = 4.8
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 378 CRYCQRMFRNEDKLTAHELSHTMEKTF 404
C C ++FR+ L H+LSH+ EK +
Sbjct: 8 CEICGKIFRDVYHLNRHKLSHSGEKPY 34
>d1mtyd_ a.25.1.2 (D:) Methane monooxygenase hydrolase alpha subunit
{Methylococcus capsulatus [TaxId: 414]}
Length = 512
Score = 27.1 bits (60), Expect = 4.9
Identities = 9/45 (20%), Positives = 19/45 (42%)
Query: 174 HMENVKQCKICLEIFEDDEVLEEHVKSHQNRRFKCPCCERIFTSE 218
+++ V Q C + + L H + + F ER++ +E
Sbjct: 402 YIDRVSQVPFCPSLAKGASTLRVHEYNGEMHTFSDQWGERMWLAE 446
>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 23.8 bits (51), Expect = 5.1
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 121 QKKYKCKLCARMYRYKWNLKAHLKMHKG 148
++ +KC++C R L HL+ H G
Sbjct: 1 ERPFKCQICPYASRNSSQLTVHLRSHTG 28
>d2fzcb2 g.41.7.1 (B:101-153) Aspartate carbamoyltransferase,
Regulatory-chain, C-terminal domain {Escherichia coli
[TaxId: 562]}
Length = 53
Score = 24.3 bits (53), Expect = 5.9
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 247 EIKFHLHGRAHAKFYRCSECEKRFATEDIMR 277
F + RA+ +C CEK F+ ++
Sbjct: 22 SSSFAVRKRANDIALKCKYCEKEFSHNVVLA 52
>d2ogqa1 d.223.1.2 (A:371-494) Serine/threonine-protein kinase plk
C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 124
Score = 25.6 bits (56), Expect = 5.9
Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 4/42 (9%)
Query: 279 HFRNYHNKEDAYVCNYCYDSFETKSTLVDHFFHHGNPYMCNH 320
+ E + +S K TL+ +F + YM H
Sbjct: 82 QYIERDGTESYLTVSSHPNSLMKKITLLKYFRN----YMSEH 119
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine
herpesvirus 1 [TaxId: 10326]}
Length = 68
Score = 24.5 bits (53), Expect = 6.1
Identities = 9/46 (19%), Positives = 15/46 (32%), Gaps = 8/46 (17%)
Query: 180 QCKICLEIFEDDEVL--------EEHVKSHQNRRFKCPCCERIFTS 217
+C ICLE + + + + CP C+ S
Sbjct: 7 RCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 25.5 bits (55), Expect = 7.6
Identities = 13/105 (12%), Positives = 28/105 (26%), Gaps = 12/105 (11%)
Query: 212 ERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHAKFYRCSECEKRFA 271
+ + A + + +C C + G + C +C+K
Sbjct: 26 QERIGRLVDRLETMRKNVAGDGVNRCILCGEQL---------GMLGSASVVCEDCKKNVC 76
Query: 272 TEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHFFHHGNPY 316
T+ + + ++C C + E FF
Sbjct: 77 TKCGVETS---NNRPHPVWLCKICLEQREVWKRSGAWFFKGFPKQ 118
>d1h9aa1 c.2.1.3 (A:1-181,A:413-426) Glucose 6-phosphate
dehydrogenase, N-terminal domain {Leuconostoc
mesenteroides [TaxId: 1245]}
Length = 195
Score = 25.8 bits (56), Expect = 7.9
Identities = 16/128 (12%), Positives = 34/128 (26%), Gaps = 14/128 (10%)
Query: 249 KFHLHGRAHAKFYRCSECEKRF-ATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVD 307
F + G A + + +D + E + + + L +
Sbjct: 38 HFAIVGTARQALNDDEFKQLVRDSIKDFTDDQAQAEAFIEHFSYRAHDVTDAASYAVLKE 97
Query: 308 HFFHHGNPYMC--NHCFLM------FPD-EKNLRNHECTSCFTCPFCQRKYKIEKHLEKH 358
+ + N F M F K L++ + + IEK
Sbjct: 98 AIEEAADKFDIDGNRIFYMSVAPRFFGTIAKYLKSEGLLA----DTGYNRLMIEKPFGTS 153
Query: 359 IESCIQLN 366
++ +L
Sbjct: 154 YDTAAELQ 161
>d1pg5b2 g.41.7.1 (B:105-160) Aspartate carbamoyltransferase,
Regulatory-chain, C-terminal domain {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 56
Score = 23.9 bits (52), Expect = 8.1
Identities = 13/51 (25%), Positives = 17/51 (33%), Gaps = 5/51 (9%)
Query: 232 ENLFKCK--KCLKVFSDEI--KFHLHGRAHAKFYRCSECEKRFATEDIMRQ 278
+ + KC C+ E F K RC CE +IM Q
Sbjct: 4 KGILKCPNPYCITSNDVEAIPTFKTLTEKPLK-MRCEYCETIIDENEIMSQ 53
>d2omoa1 d.58.4.11 (A:1-98) Hypothetical protein NE0621
{Nitrosomonas europaea [TaxId: 915]}
Length = 98
Score = 25.0 bits (54), Expect = 8.3
Identities = 2/24 (8%), Positives = 9/24 (37%)
Query: 183 ICLEIFEDDEVLEEHVKSHQNRRF 206
+ E ++ + H ++ +
Sbjct: 51 VLYEAYKTRKDAAAHKETAHYLTW 74
>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 26
Score = 23.1 bits (49), Expect = 9.2
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 154 CAQCDKAFSLKSNLSKHVRHH 174
C C K FS K L H+R H
Sbjct: 4 CEVCGKCFSRKDKLKTHMRCH 24
>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 37
Score = 23.1 bits (50), Expect = 9.9
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 121 QKKYKCKLCARMYRYKWNLKAHLKMHKGPK 150
+ Y C C R +R L H+ +H+ +
Sbjct: 3 PRSYTCSFCKREFRSAQALGGHMNVHRRDR 32
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.134 0.433
Gapped
Lambda K H
0.267 0.0472 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,637,520
Number of extensions: 82469
Number of successful extensions: 1044
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1024
Number of HSP's successfully gapped: 368
Length of query: 420
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 332
Effective length of database: 1,199,356
Effective search space: 398186192
Effective search space used: 398186192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (25.2 bits)