BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy3233
         (116 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2MYS|A Chain A, Myosin Subfragment-1, Alpha Carbon Coordinates Only For
           The Two Light Chains
          Length = 843

 Score = 27.7 bits (60), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 23  RYIIQNESNVPSFLEH-VKDKILRTGKYLNVIRKCKASVQSKCLLDKQRQR 72
           R II NE+  P  +EH +    LR    L  IR C+    S+ L    +QR
Sbjct: 673 RCIIPNETXTPGAMEHELVLHQLRCNGVLEGIRICRKGFPSRVLYADFKQR 723


>pdb|1M8Q|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1M8Q|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1M8Q|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1M8Q|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1MVW|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1MVW|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1MVW|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1MVW|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1MVW|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1MVW|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O18|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O18|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O18|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O18|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O18|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O18|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O19|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O19|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O19|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O19|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O19|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O19|S Chain S, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O1A|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O1A|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O1A|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O1A|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O1A|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O1A|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O1B|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O1B|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O1B|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O1B|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O1C|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O1C|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O1C|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O1C|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O1C|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O1D|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O1D|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O1D|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O1D|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O1D|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O1D|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O1E|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O1E|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O1E|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O1E|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O1E|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O1E|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O1F|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O1F|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O1F|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O1F|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O1G|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O1G|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O1G|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O1G|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O1G|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O1G|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
          Length = 840

 Score = 27.7 bits (60), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 23  RYIIQNESNVPSFLEH-VKDKILRTGKYLNVIRKCKASVQSKCLLDKQRQR 72
           R II NE+  P  +EH +    LR    L  IR C+    S+ L    +QR
Sbjct: 670 RCIIPNETXTPGAMEHELVLHQLRCNGVLEGIRICRKGFPSRVLYADFKQR 720


>pdb|2EX4|A Chain A, Crystal Structure Of Human Methyltransferase Ad-003 In
           Complex With S-adenosyl-l-homocysteine
 pdb|2EX4|B Chain B, Crystal Structure Of Human Methyltransferase Ad-003 In
           Complex With S-adenosyl-l-homocysteine
          Length = 241

 Score = 27.7 bits (60), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 14/56 (25%), Positives = 30/56 (53%)

Query: 53  IRKCKASVQSKCLLDKQRQRAAEMKYMESTDSALIRMIDEAYHFASSSLLTLLMQD 108
           +R+CK S++   ++  +   A E   ++  DS++ R +D       S+ L+LL ++
Sbjct: 168 LRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEE 223


>pdb|2JT4|A Chain A, Solution Structure Of The Sla1 Sh3-3-Ubiquitin Complex
          Length = 71

 Score = 27.3 bits (59), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 2/35 (5%)

Query: 10 VLDGKYSEDYWVQRYIIQNESN-VPS-FLEHVKDK 42
          +LD K S+D+W+ + +   +S  VP+ F+E V+DK
Sbjct: 33 ILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPVRDK 67


>pdb|2W4A|M Chain M, Isometrically Contracting Insect Asynchronous Flight
           Muscle
 pdb|2W4G|M Chain M, Isometrically Contracting Insect Asynchronous Flight
           Muscle Quick Frozen After A Quick Stretch Step
 pdb|2W4H|M Chain M, Isometrically Contracting Insect Asynchronous Flight
           Muscle Quick Frozen After A Quick Release Step
          Length = 840

 Score = 27.3 bits (59), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 23  RYIIQNESNVPSFLEH-VKDKILRTGKYLNVIRKCKASVQSKCLLDKQRQR 72
           R II NE+  P  +EH +    LR    L  IR C+    S+ L    +QR
Sbjct: 670 RCIIPNETKTPGAMEHELVLHQLRCNGVLEGIRICRKGFPSRVLYADFKQR 720


>pdb|2AAA|A Chain A, Calcium Binding In Alpha-Amylases: An X-Ray Diffraction
           Study At 2.1 Angstroms Resolution Of Two Enzymes From
           Aspergillus
          Length = 484

 Score = 26.9 bits (58), Expect = 3.0,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 4   EKLENDVLDGKYSEDYWVQR-YIIQNESNVPSFLEHVKDKILRTGKYLNV 52
           E+L  D  DG+    YW Q+ Y + +       L+ + D +   G YL V
Sbjct: 67  EQLPQDTADGEAYHGYWQQKIYDVNSNFGTADNLKSLSDALHARGMYLMV 116


>pdb|4ATG|A Chain A, Taf6 C-Terminal Domain From Antonospora Locustae
          Length = 196

 Score = 26.6 bits (57), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 10/27 (37%), Positives = 18/27 (66%)

Query: 32 VPSFLEHVKDKILRTGKYLNVIRKCKA 58
          VP F++H+ + IL++ K   V++ C A
Sbjct: 42 VPYFIQHISELILKSFKEAEVLKTCIA 68


>pdb|1MU2|A Chain A, Crystal Structure Of Hiv-2 Reverse Transcriptase
          Length = 555

 Score = 25.4 bits (54), Expect = 8.0,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 23/38 (60%)

Query: 15  YSEDYWVQRYIIQNESNVPSFLEHVKDKILRTGKYLNV 52
           Y E+  ++  + +++ N  ++  H ++KIL+ GKY  V
Sbjct: 319 YQEEKELEATVQKDQDNQWTYKIHQEEKILKVGKYAKV 356


>pdb|1MU2|B Chain B, Crystal Structure Of Hiv-2 Reverse Transcriptase
          Length = 426

 Score = 25.4 bits (54), Expect = 8.5,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 23/38 (60%)

Query: 15  YSEDYWVQRYIIQNESNVPSFLEHVKDKILRTGKYLNV 52
           Y E+  ++  + +++ N  ++  H ++KIL+ GKY  V
Sbjct: 314 YQEEKELEATVQKDQDNQWTYKIHQEEKILKVGKYAKV 351


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.132    0.369 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,085,779
Number of Sequences: 62578
Number of extensions: 102197
Number of successful extensions: 278
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 274
Number of HSP's gapped (non-prelim): 10
length of query: 116
length of database: 14,973,337
effective HSP length: 79
effective length of query: 37
effective length of database: 10,029,675
effective search space: 371097975
effective search space used: 371097975
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)