BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3233
(116 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9XYP7|GCP2_DROME Gamma-tubulin complex component 2 homolog OS=Drosophila
melanogaster GN=Grip84 PE=1 SV=2
Length = 852
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 65/114 (57%), Gaps = 12/114 (10%)
Query: 4 EKLENDVLDGKYSEDYWVQRYIIQNESNVPSFLEHVKDKILRTGKYLNVIRKCKASVQSK 63
E + D L YS+DYW +RY +++E +PSFL DKILRTGKYLNVIR+C V
Sbjct: 401 EVIHRDELPEHYSDDYWERRYTLRDE-QIPSFLAKYSDKILRTGKYLNVIRQCGKRVMP- 458
Query: 64 CLLDKQRQRAAEMKY-MESTDSALIRMIDEAYHFASSSLLTLLMQDYDLVNRIR 116
EM + T + +I++AY+FA+ LL +L+ + DL+ ++
Sbjct: 459 ---------TQEMNLEFDPTSERHVSVINDAYYFAARMLLDVLLTENDLMGHLQ 503
>sp|Q5R5J6|GCP2_PONAB Gamma-tubulin complex component 2 OS=Pongo abelii GN=TUBGCP2 PE=2
SV=1
Length = 902
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 60/102 (58%), Gaps = 10/102 (9%)
Query: 15 YSEDYWVQRYIIQNESNVPSFLEHVKDKILRTGKYLNVIRKCKASVQSKCLLDKQRQRAA 74
Y++ YW QRY I + +PSFL+ + DKIL TGKYLNV+R+C V A
Sbjct: 423 YNDKYWDQRYTIVQQ-QIPSFLQKMADKILSTGKYLNVVRECGHDVTCPV--------AK 473
Query: 75 EMKYMESTDSALIRMIDEAYHFASSSLLTLLMQDYDLVNRIR 116
E+ Y + A + I++A+++AS LL LM++ +LV +R
Sbjct: 474 EIIYT-LKERAYVEQIEKAFNYASKVLLDFLMEEKELVAHLR 514
>sp|Q9BSJ2|GCP2_HUMAN Gamma-tubulin complex component 2 OS=Homo sapiens GN=TUBGCP2 PE=1
SV=2
Length = 902
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 60/102 (58%), Gaps = 10/102 (9%)
Query: 15 YSEDYWVQRYIIQNESNVPSFLEHVKDKILRTGKYLNVIRKCKASVQSKCLLDKQRQRAA 74
Y++ YW QRY I + +PSFL+ + DKIL TGKYLNV+R+C V A
Sbjct: 423 YNDKYWDQRYTIVQQ-QIPSFLQKMADKILSTGKYLNVVRECGHDVTCPV--------AK 473
Query: 75 EMKYMESTDSALIRMIDEAYHFASSSLLTLLMQDYDLVNRIR 116
E+ Y + A + I++A+++AS LL LM++ +LV +R
Sbjct: 474 EIIYTLK-ERAYVEQIEKAFNYASKVLLDFLMEEKELVAHLR 514
>sp|Q921G8|GCP2_MOUSE Gamma-tubulin complex component 2 OS=Mus musculus GN=Tubgcp2 PE=2
SV=2
Length = 905
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 64/113 (56%), Gaps = 15/113 (13%)
Query: 4 EKLENDVLDGKYSEDYWVQRYIIQNESNVPSFLEHVKDKILRTGKYLNVIRKCKASVQSK 63
EK++ D Y++ YW QRY + + +PSFL+ V KIL TGKYLNV+R+C V
Sbjct: 417 EKIQED-----YNDKYWDQRYTVLPQ-QIPSFLQKVAGKILSTGKYLNVVRECGHDVTCP 470
Query: 64 CLLDKQRQRAAEMKYMESTDSALIRMIDEAYHFASSSLLTLLMQDYDLVNRIR 116
A E+ Y + A + I++A+++AS LL LM++ +LV +R
Sbjct: 471 V--------AKEIIYTLK-ERAYVEQIEKAFNYASKVLLDFLMEEKELVAHLR 514
>sp|Q9Y705|ALP4_SCHPO Spindle pole body component alp4 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=alp4 PE=1 SV=1
Length = 784
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 11 LDGKYSEDYWVQRYIIQNESNVPSFLEHVKDKILRTGKYLNVIRKCKASVQSKCLLDKQR 70
LD Y+++YW +RY+I+ E VP L +++K+L GKYLNV+ +C+ V + L+ +
Sbjct: 323 LDEDYTDEYWEKRYVIR-EDQVPPQLLDLQNKVLFAGKYLNVVLECRKGVNNLASLNAKD 381
Query: 71 QRAAEMKYMESTD 83
++ + + D
Sbjct: 382 DTQNQLLWPSTFD 394
>sp|Q95ZG3|SPC97_DICDI Spindle pole body component 97 OS=Dictyostelium discoideum GN=spc97
PE=2 SV=2
Length = 1335
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 70/150 (46%), Gaps = 40/150 (26%)
Query: 6 LENDVLDGKYSEDYWVQRYIIQNESNVPSFLEHVKDKILRTGKYLNVIRKCKASVQSKCL 65
L+ D ++ +++ YW QRY I+ + +P +L+ KIL TGKYLNV+R+C S+ +
Sbjct: 632 LKRDNINRDFNDLYWEQRYQIR-QDQIPKYLQSHALKILTTGKYLNVVRECNQSISQQQQ 690
Query: 66 LDKQ------------------------RQRAAEMKYMESTDSALIRM------------ 89
+K + + + + ST +++I
Sbjct: 691 HNKSDNNNNNNNNVKLNSQQQLLLLKLNTTQQQQQQQLSSTSASMIPTTIIEYSKNENVY 750
Query: 90 ---IDEAYHFASSSLLTLLMQDYDLVNRIR 116
I++AY +AS LL LL+ + L++R++
Sbjct: 751 IDKIEKAYDYASGILLNLLINERHLISRLK 780
>sp|Q8WWQ2|HPSE2_HUMAN Inactive heparanase-2 OS=Homo sapiens GN=HPSE2 PE=1 SV=3
Length = 592
Score = 37.7 bits (86), Expect = 0.020, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 35 FLEHVKDKILRTGKYLNVIRKCKASVQSKCLLDKQRQRAAEM------KYMESTDSALI- 87
+L++ +D I+R+ L+ + CK + +L+ QR++AA+M + +T S LI
Sbjct: 143 YLKNYEDDIVRSDVALDKQKGCKIAQHPDVMLELQREKAAQMHLVLLKEQFSNTYSNLIL 202
Query: 88 --RMIDEAYHFASSSLLTLL 105
R +D+ Y+FA S L L+
Sbjct: 203 TARSLDKLYNFADCSGLHLI 222
>sp|B2RY83|HPSE2_MOUSE Inactive heparanase-2 OS=Mus musculus GN=Hpse2 PE=2 SV=1
Length = 592
Score = 36.6 bits (83), Expect = 0.052, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 35 FLEHVKDKILRTGKYLNVIRKCKASVQSKCLLDKQRQRAAEMKYM------ESTDSALI- 87
+L++ +D I+R+ L+ + CK + +L+ QR++A++M + +T S LI
Sbjct: 143 YLKNYEDDIVRSDVALDKQKGCKIAQHPDVMLELQREKASQMHLVLLKEQYSNTYSNLIL 202
Query: 88 --RMIDEAYHFASSSLLTLL 105
R +D+ Y+FA S L L+
Sbjct: 203 TARSLDKLYNFADCSGLHLI 222
>sp|Q96RT7|GCP6_HUMAN Gamma-tubulin complex component 6 OS=Homo sapiens GN=TUBGCP6 PE=1
SV=3
Length = 1819
Score = 33.1 bits (74), Expect = 0.56, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 19 YWVQRYII---QNESNVPSFLEHVKDKILRTGKYLNVIRKC 56
YW Y++ + E VP FL+H+ I GK +N+++ C
Sbjct: 568 YWTHGYVLISKEVEDCVPVFLKHIAHDIYVCGKTINLLKLC 608
>sp|P38863|SPC97_YEAST Spindle pole body component SPC97 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SPC97 PE=1 SV=1
Length = 823
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 14/82 (17%)
Query: 42 KILRTGKYLNVIRKCKASVQSKCLLDKQRQRAAEMKYMESTDSA-------LIRMIDEAY 94
K+LRTG L V+R AS+Q + ++++ E D A L +D+ Y
Sbjct: 346 KMLRTGILLKVVR---ASLQIPTI----PSNSSDITIQEINDFADLMEGSNLELYVDKCY 398
Query: 95 HFASSSLLTLLMQDYDLVNRIR 116
A+ L L Q YDL+N ++
Sbjct: 399 SRANEIFLKLFFQGYDLINVLK 420
>sp|A3DF23|PRMA_CLOTH Ribosomal protein L11 methyltransferase OS=Clostridium
thermocellum (strain ATCC 27405 / DSM 1237) GN=prmA
PE=3 SV=1
Length = 313
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 2 SIEKLENDVLDGKYSEDYWVQRYIIQNESNVPSFLEHVKDKILRTGKYLNV 52
SI+ ++++ L+ ED V+ Y E+NVP + +K+K+ G +LNV
Sbjct: 47 SIDYVDDEFLN-SLGEDVVVKAYF-PGETNVPELVSLIKEKLAFIGTFLNV 95
>sp|Q3AQX4|UVRC_CHLCH UvrABC system protein C OS=Chlorobium chlorochromatii (strain CaD3)
GN=uvrC PE=3 SV=1
Length = 629
Score = 29.6 bits (65), Expect = 5.6, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 53 IRKCKASVQSKCLLDKQRQRAAEM-KYMESTDSALIRMIDEAYHFASSSL 101
I KCK + + D+ RQ E+ K ++ SALIR + E H A++ L
Sbjct: 187 IHKCKGACEGLQPEDEYRQMIDEIIKLLKGKTSALIRSLTENMHLAATEL 236
>sp|Q96ST3|SIN3A_HUMAN Paired amphipathic helix protein Sin3a OS=Homo sapiens GN=SIN3A PE=1
SV=2
Length = 1273
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 4 EKLENDVLDGKYSEDYWVQRYIIQNESNVPSFLEHVKDKILRTGKYLNVIRKCKASVQSK 63
E+ +D ++ + DY V+RY+ +++ P EH+ K + + L IRKC+ + +
Sbjct: 1086 EENSDDPVEAERWSDY-VERYM-NSDTTSPELREHLAQKPVFLPRNLRRIRKCQRGREQQ 1143
Query: 64 CLLDKQRQRAAEMKYMESTDS 84
+K+ + K ME+ DS
Sbjct: 1144 ---EKEGKEGNSKKTMENVDS 1161
>sp|Q8C561|LMBD2_MOUSE LMBR1 domain-containing protein 2 OS=Mus musculus GN=Lmbrd2 PE=2
SV=1
Length = 694
Score = 29.6 bits (65), Expect = 6.4, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 29 ESNVPSFLEHVKDKILRTGKYLNVIRKCKASVQSKCLLDKQRQRAAEMKYMESTD 83
E N+ +E V+ K+ + KY + +RKC ++ KC D Q + M E D
Sbjct: 241 EENLEDVMEEVR-KVNESIKYNHPLRKCVDTILKKCPTDYQEKMGRNMDDYEDFD 294
>sp|Q2T9N3|NTM1A_BOVIN N-terminal Xaa-Pro-Lys N-methyltransferase 1 OS=Bos taurus GN=NTMT1
PE=2 SV=3
Length = 223
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 30/56 (53%)
Query: 53 IRKCKASVQSKCLLDKQRQRAAEMKYMESTDSALIRMIDEAYHFASSSLLTLLMQD 108
+R+CK ++ ++ + A E ++ DS++ R +D + S+ L+LL Q+
Sbjct: 150 LRRCKRGLRPNGIIVIKDNMAQEGVILDDVDSSVCRALDVVHRIVRSAGLSLLAQE 205
>sp|P08318|PP150_HCMVA Large structural phosphoprotein OS=Human cytomegalovirus (strain
AD169) GN=UL32 PE=1 SV=1
Length = 1048
Score = 28.9 bits (63), Expect = 9.1, Method: Composition-based stats.
Identities = 26/115 (22%), Positives = 58/115 (50%), Gaps = 7/115 (6%)
Query: 3 IEKLENDVLDGKYSEDYWVQRYIIQNESNVPSFLEHVKDKILRTGKYLNVIRKCKASVQS 62
++++E + L+G + V+ + + + + L + +K++ TG+ + +R+ ++
Sbjct: 164 VQRIEEN-LEGVRRNMFCVKPLDLNLDRHANTALVNAVNKLVYTGRLIMNVRRSWEELER 222
Query: 63 KCLLDKQRQ---RAAEMKYMESTDSALIR-MIDEAYHFASS--SLLTLLMQDYDL 111
KCL Q + E++ S DS R ++ A S +LL LL++D+D+
Sbjct: 223 KCLARIQERCKLLVKELRMCLSFDSNYCRNILKHAVENGDSADTLLELLIEDFDI 277
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.132 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,819,799
Number of Sequences: 539616
Number of extensions: 1322298
Number of successful extensions: 3903
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 3881
Number of HSP's gapped (non-prelim): 26
length of query: 116
length of database: 191,569,459
effective HSP length: 84
effective length of query: 32
effective length of database: 146,241,715
effective search space: 4679734880
effective search space used: 4679734880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)