Query psy3233
Match_columns 116
No_of_seqs 102 out of 291
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 19:46:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3233.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3233hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2001|consensus 99.9 4E-28 8.6E-33 202.8 6.7 103 6-116 301-404 (734)
2 KOG2000|consensus 99.6 9E-17 2E-21 139.2 3.8 100 14-116 416-520 (879)
3 PF04130 Spc97_Spc98: Spc97 / 99.5 1.2E-14 2.6E-19 117.6 5.3 104 12-116 206-320 (542)
4 PF10848 DUF2655: Protein of u 74.1 0.49 1.1E-05 29.8 -1.4 20 41-60 25-55 (82)
5 PF08183 SpoV: Stage V sporula 53.2 14 0.0003 18.8 1.8 19 24-46 4-22 (26)
6 PRK14741 spoVM stage V sporula 49.2 22 0.00047 18.0 2.1 15 32-46 8-22 (26)
7 PF10766 DUF2592: Protein of u 48.8 22 0.00048 19.9 2.3 29 31-59 11-39 (41)
8 KOG2065|consensus 42.7 22 0.00048 30.5 2.5 86 31-116 256-367 (679)
9 PRK04435 hypothetical protein; 39.1 22 0.00047 25.0 1.7 36 23-59 7-47 (147)
10 PF08788 NHR2: NHR2 domain lik 35.8 47 0.001 20.6 2.6 41 13-58 7-47 (67)
11 PF05534 HicB: HicB family; I 35.3 36 0.00079 19.7 2.0 27 22-52 18-45 (51)
12 PF08097 Toxin_26: Conotoxin T 30.3 15 0.00031 14.8 -0.2 6 52-57 5-10 (11)
13 PF05838 Glyco_hydro_108: Glyc 30.3 13 0.00027 23.9 -0.6 39 2-47 41-79 (83)
14 PF12186 AcylCoA_dehyd_C: Acyl 28.1 1.8E+02 0.004 19.9 4.8 19 45-63 1-19 (114)
15 KOG1617|consensus 27.6 36 0.00078 26.3 1.4 33 17-51 111-143 (243)
16 KOG0099|consensus 25.6 27 0.0006 28.0 0.4 30 17-49 259-291 (379)
17 KOG4186|consensus 24.2 68 0.0015 24.7 2.3 20 39-58 52-71 (233)
18 PHA02972 hypothetical protein; 22.4 57 0.0012 21.7 1.4 13 45-57 79-92 (109)
19 cd03572 ENTH_epsin_related ENT 21.3 2.1E+02 0.0046 19.6 4.1 14 47-60 56-69 (122)
20 PF10126 Nit_Regul_Hom: Unchar 21.3 61 0.0013 22.1 1.4 16 45-60 15-30 (110)
21 PF07311 Dodecin: Dodecin; In 21.0 97 0.0021 19.1 2.1 21 82-102 12-32 (66)
22 PHA03165 hypothetical protein; 20.5 19 0.00042 21.0 -1.0 21 14-35 13-33 (57)
No 1
>KOG2001|consensus
Probab=99.95 E-value=4e-28 Score=202.77 Aligned_cols=103 Identities=41% Similarity=0.702 Sum_probs=91.3
Q ss_pred cccccCCCCCCHHhhhccceeccCCCCChhhHHHHHHHHhhhHHHHHHHHhhCCCcchhhhhHHhhhhhhccccC-Cchh
Q psy3233 6 LENDVLDGKYSEDYWVQRYIIQNESNVPSFLEHVKDKILRTGKYLNVIRKCKASVQSKCLLDKQRQRAAEMKYME-STDS 84 (116)
Q Consensus 6 ~~k~~l~~~~~d~~W~~rY~lr~~~~iP~FL~~~a~kIL~TGK~lN~lR~c~~~~~~~~~~~~~~~~~~~l~~~~-~~~~ 84 (116)
++|+.+++||+|+||++||+||++ .||.||.+.|+|||.||||+||+|+||+.++.|... . .+.|.. ..+.
T Consensus 301 ~~k~~l~ed~~d~YW~~RY~ir~d-qiP~fL~~~adkIL~tGKYLNVvReC~~~v~~p~~~------n-~~~~~~~~~e~ 372 (734)
T KOG2001|consen 301 ITKEDLPEDYTDKYWDQRYTIRKD-QIPGFLLSEADKILRTGKYLNVVRECGKIVTIPQSS------N-EINDPADLMES 372 (734)
T ss_pred hhhhcCchhhhHHHHHHhheechh-hcchHHHHHHHHHHHhhhHHHHHHHhCccCCCCcch------h-hhccccccchh
Confidence 788999999999999999999999 999999999999999999999999999999877321 0 233320 2369
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccchhccC
Q psy3233 85 ALIRMIDEAYHFASSSLLTLLMQDYDLVNRIR 116 (116)
Q Consensus 85 ~~~~~Id~ay~~As~~Ll~lL~~~~~L~~hL~ 116 (116)
.++..|+.||.+||..||++|+++|+|.+|||
T Consensus 373 ~~~e~I~~ay~~A~~~lL~ll~~e~dL~~hLr 404 (734)
T KOG2001|consen 373 NHEEYIKKAYEFANEILLKLLFEEYDLVGHLR 404 (734)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 99999999999999999999999999999996
No 2
>KOG2000|consensus
Probab=99.64 E-value=9e-17 Score=139.22 Aligned_cols=100 Identities=24% Similarity=0.430 Sum_probs=84.6
Q ss_pred CCCHHhhhccceeccCCCCChhhHH-HHHHHHhhhHHHHHHHHhhCCCcchhhhhHH---h-hhhhhccccCCchhHHHH
Q psy3233 14 KYSEDYWVQRYIIQNESNVPSFLEH-VKDKILRTGKYLNVIRKCKASVQSKCLLDKQ---R-QRAAEMKYMESTDSALIR 88 (116)
Q Consensus 14 ~~~d~~W~~rY~lr~~~~iP~FL~~-~a~kIL~TGK~lN~lR~c~~~~~~~~~~~~~---~-~~~~~l~~~~~~~~~~~~ 88 (116)
.-.|++|+++|.++.. |||.||.. +|.|||+|||++||+|.||....|....+.. . .....+.|+ .+..++.
T Consensus 416 ~~~d~lw~~~~~l~~~-~lP~Fi~~~~a~kI~l~GKsinfL~~~c~e~~w~~e~~~~~~~~~s~~~~l~~~--~~~~l~~ 492 (879)
T KOG2000|consen 416 VKDDRLWHDGYKLRYE-MLPSFIPMELAQKILLIGKSINFLRDCCNEQTWSDEIDAKASVEESSTRDLEYA--SDVGLLG 492 (879)
T ss_pred cccccccccccccchh-hcccccCHHHHHHHHHhhhHHHHHHHhccccccccchhHHHHHhhhhhhhhccC--CChhHHH
Confidence 3448999999999999 99999999 9999999999999999999987765443321 0 112266776 6999999
Q ss_pred HHHHHHHHHHHHHHHHHhccccchhccC
Q psy3233 89 MIDEAYHFASSSLLTLLMQDYDLVNRIR 116 (116)
Q Consensus 89 ~Id~ay~~As~~Ll~lL~~~~~L~~hL~ 116 (116)
.|++||....++|.++|.+.|+|.+|++
T Consensus 493 ~v~~ay~e~inhl~~ll~~~~~l~dh~~ 520 (879)
T KOG2000|consen 493 SVSEAYSEIVNHLNDILEEVISLLDHNQ 520 (879)
T ss_pred HHhhhhccchHHHHHHHHHHhhHHHHHH
Confidence 9999999999999999999999999974
No 3
>PF04130 Spc97_Spc98: Spc97 / Spc98 family; InterPro: IPR007259 Members of this family are spindle pole body (SBP) components such as Spc97, Spc98 and gamma-tubulin. The SPB functions as the microtubule-organising centre in yeast, with the microtubule cytoskeleton playing an essential role in chromosome segregation, cellular organisation and vesicle trafficking in eukaryotic cells. In most cells, the centrosome is the primary microtubule-organising centre that nucleates and organises microtubules. Gamma-tubulin localises to centrosomes and is required for microtubule nucleation. In Saccharomyces cerevisiae, gamma-tubulin forms a stable complex with Spc97 and Spc98 [].; GO: 0000226 microtubule cytoskeleton organization, 0000922 spindle pole, 0005815 microtubule organizing center; PDB: 3RIP_A.
Probab=99.52 E-value=1.2e-14 Score=117.56 Aligned_cols=104 Identities=28% Similarity=0.577 Sum_probs=59.0
Q ss_pred CCCCCHHhhhccceeccCCCCChhh-HHHHHHHHhhhHHHHHHHHhhCCCcchhhhhH----------HhhhhhhccccC
Q psy3233 12 DGKYSEDYWVQRYIIQNESNVPSFL-EHVKDKILRTGKYLNVIRKCKASVQSKCLLDK----------QRQRAAEMKYME 80 (116)
Q Consensus 12 ~~~~~d~~W~~rY~lr~~~~iP~FL-~~~a~kIL~TGK~lN~lR~c~~~~~~~~~~~~----------~~~~~~~l~~~~ 80 (116)
....++.+|+++|+++++ ++|.|+ .++|++|+.+||++++||.|+........... .........+..
T Consensus 206 ~~~~~~~~w~~~f~l~~~-~~P~fl~~~~a~~Il~~Gk~~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (542)
T PF04130_consen 206 NSESSEDFWDDRFVLRES-RVPSFLSKDLAEKILEIGKSLRLLRSCNPEHEWCSDQELSSDLCLSDKESSESSSLQPFEP 284 (542)
T ss_dssp ------------EEE-GG-GS-TTS-HHHHHHHHHHHHHHHT------S------TT-SHHH----HHHHHHHHHHT-SS
T ss_pred cCcccchhhccCEEECcc-cCChhcCHHHHHHHHHHHHHHHHHHHhccccccchhccchhhhhhhhhhhhhHHHhccccc
Confidence 455678999999999999 999999 55999999999999999999877543211100 000111111222
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhccccchhccC
Q psy3233 81 STDSALIRMIDEAYHFASSSLLTLLMQDYDLVNRIR 116 (116)
Q Consensus 81 ~~~~~~~~~Id~ay~~As~~Ll~lL~~~~~L~~hL~ 116 (116)
.....++..|++.|..+|+.|+++|+++++|.+||+
T Consensus 285 ~~~~~l~~~i~~~~~~~~~~l~~~l~~~~~l~~~l~ 320 (542)
T PF04130_consen 285 LDQDKLESKIESQYKLVNKSLLDLLFEDYNLLEHLK 320 (542)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 578999999999999999999999999999999984
No 4
>PF10848 DUF2655: Protein of unknown function (DUF2655); InterPro: IPR020371 This entry contains proteins with no known function.
Probab=74.15 E-value=0.49 Score=29.78 Aligned_cols=20 Identities=30% Similarity=0.393 Sum_probs=15.2
Q ss_pred HHHHhhhHH-----------HHHHHHhhCCC
Q psy3233 41 DKILRTGKY-----------LNVIRKCKASV 60 (116)
Q Consensus 41 ~kIL~TGK~-----------lN~lR~c~~~~ 60 (116)
++|+.|||- -||||+||.+.
T Consensus 25 e~~~~tgkdcnpqpanclkd~~vlrhccv~d 55 (82)
T PF10848_consen 25 EIFPSTGKDCNPQPANCLKDQYVLRHCCVDD 55 (82)
T ss_pred cccccCCCCCCCCchhhhhhhhhhhhhcccC
Confidence 567888864 56999998764
No 5
>PF08183 SpoV: Stage V sporulation protein family; InterPro: IPR012609 This family consists of the stage V sporulation (SpoV) proteins of Bacillus subtilis which includes SpoVM. SpoVM is an small, 26 residue-long protein that is produced in the mother cell chamber of the sporangium during the process of sporulation in B. subtilis. SpoVM forms an amphipathic alpha-helix and is recruited to the polar septum shortly after the sporangium undergoes asymmetric division. The function of SpoVM depends on proper subcellular localisation [].
Probab=53.22 E-value=14 Score=18.83 Aligned_cols=19 Identities=37% Similarity=0.651 Sum_probs=14.4
Q ss_pred ceeccCCCCChhhHHHHHHHHhh
Q psy3233 24 YIIQNESNVPSFLEHVKDKILRT 46 (116)
Q Consensus 24 Y~lr~~~~iP~FL~~~a~kIL~T 46 (116)
|+|+ +|.|+..+..++|.+
T Consensus 4 YtIK----Lpkf~Gg~v~~~L~s 22 (26)
T PF08183_consen 4 YTIK----LPKFLGGVVRALLFS 22 (26)
T ss_pred eeee----chHHHhHHHHHHHHH
Confidence 5654 799999987777765
No 6
>PRK14741 spoVM stage V sporulation protein M; Provisional
Probab=49.23 E-value=22 Score=17.96 Aligned_cols=15 Identities=27% Similarity=0.578 Sum_probs=12.3
Q ss_pred CChhhHHHHHHHHhh
Q psy3233 32 VPSFLEHVKDKILRT 46 (116)
Q Consensus 32 iP~FL~~~a~kIL~T 46 (116)
+|.||.-+.+-|+.+
T Consensus 8 lpkflgg~vra~l~~ 22 (26)
T PRK14741 8 LPKFLGGIVRAMLGS 22 (26)
T ss_pred ccHHHHHHHHHHHHH
Confidence 899999987777765
No 7
>PF10766 DUF2592: Protein of unknown function (DUF2592); InterPro: IPR019702 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae. Some members are annotated as ybhY.
Probab=48.76 E-value=22 Score=19.95 Aligned_cols=29 Identities=28% Similarity=0.346 Sum_probs=25.7
Q ss_pred CCChhhHHHHHHHHhhhHHHHHHHHhhCC
Q psy3233 31 NVPSFLEHVKDKILRTGKYLNVIRKCKAS 59 (116)
Q Consensus 31 ~iP~FL~~~a~kIL~TGK~lN~lR~c~~~ 59 (116)
|||.+..-+---|..-|.-.|++...|+.
T Consensus 11 MVPVvma~ilglIyGlGevfN~iS~~Gh~ 39 (41)
T PF10766_consen 11 MVPVVMALILGLIYGLGEVFNLISKIGHS 39 (41)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 78999888888999999999999987764
No 8
>KOG2065|consensus
Probab=42.67 E-value=22 Score=30.53 Aligned_cols=86 Identities=19% Similarity=0.342 Sum_probs=55.0
Q ss_pred CCChhhHH-HHHHHHhhhHHHHHHHHh-hCCC------cchh---hhhH---------Hh-----hhhhhcccc-CCchh
Q psy3233 31 NVPSFLEH-VKDKILRTGKYLNVIRKC-KASV------QSKC---LLDK---------QR-----QRAAEMKYM-ESTDS 84 (116)
Q Consensus 31 ~iP~FL~~-~a~kIL~TGK~lN~lR~c-~~~~------~~~~---~~~~---------~~-----~~~~~l~~~-~~~~~ 84 (116)
..|.|..- ++.|+|..||-..|+..- +... +.+. +.|. .+ ++...+.-. ...-.
T Consensus 256 a~~~~~sl~~~s~~l~v~~~~s~~~~~R~~~~i~F~~~~~~~~e~eld~dlt~G~ll~~~Ed~f~aml~dLk~~~~f~~~ 335 (679)
T KOG2065|consen 256 ALPGFFSLVLASKVLFVGQTVSVFKMGRNVKVINFKTDPLAAKEAELDSDLTYGQLLSGREDEFFAMLVDLKNEDTFNVF 335 (679)
T ss_pred ccccceeeeccccceeeccchHHHhhccceeeeeccCCchhhHHhhccccchhhhhcCCChHHHHHHHHhhhcCCceeee
Confidence 46777766 888888888888887742 1111 1111 0000 00 011122111 12456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccchhccC
Q psy3233 85 ALIRMIDEAYHFASSSLLTLLMQDYDLVNRIR 116 (116)
Q Consensus 85 ~~~~~Id~ay~~As~~Ll~lL~~~~~L~~hL~ 116 (116)
.|+..||..-..++.+|.+++.++-||.+||+
T Consensus 336 ~fE~vVd~ir~~va~hLw~l~V~e~DL~gqlk 367 (679)
T KOG2065|consen 336 RFEKVVDDIRNYVAAHLWELAVNEVDLEGQLK 367 (679)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHhHHhHHhHHH
Confidence 78999999999999999999999999999985
No 9
>PRK04435 hypothetical protein; Provisional
Probab=39.14 E-value=22 Score=25.00 Aligned_cols=36 Identities=19% Similarity=0.515 Sum_probs=27.4
Q ss_pred cceeccCCCCChhhHH--HHHHHHhhhHHHHH---HHHhhCC
Q psy3233 23 RYIIQNESNVPSFLEH--VKDKILRTGKYLNV---IRKCKAS 59 (116)
Q Consensus 23 rY~lr~~~~iP~FL~~--~a~kIL~TGK~lN~---lR~c~~~ 59 (116)
-|.++++ .+|--+.+ .|++.|.+||.-.+ ++..|..
T Consensus 7 ~~~v~~~-~lp~~~~k~~~~k~ll~~~~~~~~~ea~~~~gis 47 (147)
T PRK04435 7 FYLVRED-VLPEAVEKTLKAKELLKSGKVKSINEAVKQVGIS 47 (147)
T ss_pred EEEEecc-cChHHHHHHHHHHHHHHcCCCCcHHHHHHHhCcC
Confidence 3666777 99998888 89999999998665 4444543
No 10
>PF08788 NHR2: NHR2 domain like; InterPro: IPR014896 Transcriptional activation and repression are required for control of cell proliferation and differentiation during embryonic development and homeostasis in the adult organism. Perturbations of these processes can lead to the development of cancer []. The Eight-Twenty-One (ETO) gene product is able to form complexes with corepressors and deacetylases, such as nuclear receptor corepressor (N-CoR), which repress transcription when recruited by transcription factors []. The ETO gene derives its name from its association with many cases of acute myelogenous leukaemia (AML), in which a reciprocal translocation, t(8;21), brings together a large portion of the ETO gene from chromosome eight and part of the AML1 gene from chromosome 21. The human ETO gene family currently comprises three major subfamilies: ETO/myeloid transforming gene on chromosome 8 (MTG8); myeloid transforming gene related protein-1 (MTGR1) and myeloid transforming gene on chromosome 16 (MTG16). ETO proteins are composed of four evolutionarily conserved domains termed nervy homology regions (NHR) 1-4. NHR1 is thought to stabilise the formation of high molecular weight complexes, but is not directly responsible for repressor activity. NHR2 and its flanking sequence comprise the core repressor domain, which mediates 50% of the wild type repressor activity. Furthermore, there is evidence that the amphipathic helical structure of NHR2 promotes the formation of ETO/AML1 homodimers []. NHR3 and NHR4 have been shown to act in concert to bind N-CoR. NHR4 contains two zinc finger motifs, which are thought to play a role in protein interactions rather than DNA binding []. This entry represents the NHR2 (Nervy homology 2) domain found in ETO proteins. It mediates oligomerisation and protein-protein interactions, forming an alpha-helical tetramer []. ; PDB: 1WQ6_A.
Probab=35.76 E-value=47 Score=20.58 Aligned_cols=41 Identities=22% Similarity=0.561 Sum_probs=28.6
Q ss_pred CCCCHHhhhccceeccCCCCChhhHHHHHHHHhhhHHHHHHHHhhC
Q psy3233 13 GKYSEDYWVQRYIIQNESNVPSFLEHVKDKILRTGKYLNVIRKCKA 58 (116)
Q Consensus 13 ~~~~d~~W~~rY~lr~~~~iP~FL~~~a~kIL~TGK~lN~lR~c~~ 58 (116)
.-..++=|.+... .|+.-|+-+..+|=.|-+++-|||+|..
T Consensus 7 ~~lt~~~~~deWk-----h~~~mLnCI~~MVeKTrRsl~vLrR~qe 47 (67)
T PF08788_consen 7 HRLTEREWADEWK-----HLDHMLNCIMDMVEKTRRSLAVLRRCQE 47 (67)
T ss_dssp -S--HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCccccHHHHhc-----CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444544432 4677788888899999999999999976
No 11
>PF05534 HicB: HicB family; InterPro: IPR008651 This family consists of several bacterial HicB related proteins. The function of HicB is unknown although it is thought to be involved in pilus formation. It has been speculated that HicB performs a function antagonistic to that of pili and yet is necessary for invasion of certain niches [].
Probab=35.34 E-value=36 Score=19.68 Aligned_cols=27 Identities=19% Similarity=0.381 Sum_probs=21.8
Q ss_pred ccceeccCCCCChhhHH-HHHHHHhhhHHHHH
Q psy3233 22 QRYIIQNESNVPSFLEH-VKDKILRTGKYLNV 52 (116)
Q Consensus 22 ~rY~lr~~~~iP~FL~~-~a~kIL~TGK~lN~ 52 (116)
.+|+|| ||..|-. ++..--.-|.|+|-
T Consensus 18 g~~~lR----i~~~Lh~~l~~~A~~~gvSlN~ 45 (51)
T PF05534_consen 18 GKFNLR----IPPELHRALAEAAAAEGVSLNQ 45 (51)
T ss_pred Cceeee----CCHHHHHHHHHHHHHhCCCHHH
Confidence 688888 4555555 99999999999995
No 12
>PF08097 Toxin_26: Conotoxin T-superfamily; InterPro: IPR012631 This family consists of the T-superfamily of conotoxins. Eight different T-superfamily peptides from five Conus species were identified. These peptides share a consensus signal sequence, and a conserved arrangement of cysteine residues. T-superfamily peptides were found expressed in venom ducts of all major feeding types of Conus, suggesting that the T-superfamily is a large and diverse group of peptides, widely distributed in the 500 different Conus species [].; GO: 0005576 extracellular region
Probab=30.34 E-value=15 Score=14.85 Aligned_cols=6 Identities=67% Similarity=1.038 Sum_probs=4.0
Q ss_pred HHHHhh
Q psy3233 52 VIRKCK 57 (116)
Q Consensus 52 ~lR~c~ 57 (116)
|||.||
T Consensus 5 virycc 10 (11)
T PF08097_consen 5 VIRYCC 10 (11)
T ss_pred hhheec
Confidence 567765
No 13
>PF05838 Glyco_hydro_108: Glycosyl hydrolase 108; InterPro: IPR008565 This family consists of several hypothetical bacterial sequences as well as one viral sequence Q9MC03 from SWISSPROT, the function of this family is unknown.; PDB: 2NR7_A 2IKB_B 2IS5_A.
Probab=30.29 E-value=13 Score=23.94 Aligned_cols=39 Identities=21% Similarity=0.469 Sum_probs=25.3
Q ss_pred cccccccccCCCCCCHHhhhccceeccCCCCChhhHHHHHHHHhhh
Q psy3233 2 SIEKLENDVLDGKYSEDYWVQRYIIQNESNVPSFLEHVKDKILRTG 47 (116)
Q Consensus 2 ~~~~~~k~~l~~~~~d~~W~~rY~lr~~~~iP~FL~~~a~kIL~TG 47 (116)
+|.+++++.-.+.|..+||. .++-+ .+| ..+|..+|-++
T Consensus 41 d~~~Lt~~~A~~iY~~~yW~---~~~~d-~lp---~~la~~~fD~a 79 (83)
T PF05838_consen 41 DMRDLTRDQAKAIYRRDYWD---PLGCD-QLP---QPLALVLFDTA 79 (83)
T ss_dssp -CCCS-HHHHHHCHHHHTTC---CCTGG-GSS---HHHHHHHHHHH
T ss_pred chhhcCHHHHHHHHHHHhcC---ccchh-hcC---HHHHHHHhhhh
Confidence 45667777777788888997 35555 677 55776666553
No 14
>PF12186 AcylCoA_dehyd_C: Acyl-CoA dehydrogenase C terminal; InterPro: IPR020964 This entry represents the C-terminal alpha helical domain of some bacterial Acyl-CoA dehydrogenases. It is found in association with PF02770 from PFAM, PF00441 from PFAM, PF02771 from PFAM. There is a conserved ARRL sequence motif. ; PDB: 2OKU_A.
Probab=28.11 E-value=1.8e+02 Score=19.89 Aligned_cols=19 Identities=32% Similarity=0.550 Sum_probs=13.6
Q ss_pred hhhHHHHHHHHhhCCCcch
Q psy3233 45 RTGKYLNVIRKCKASVQSK 63 (116)
Q Consensus 45 ~TGK~lN~lR~c~~~~~~~ 63 (116)
+||-|++.||++-...-.|
T Consensus 1 TnGtYl~~i~E~~~~~~~~ 19 (114)
T PF12186_consen 1 TNGTYLAIIREYEQAEVSP 19 (114)
T ss_dssp HHTHHHHHHHTGGGS---G
T ss_pred CCchHHHHHHHHHhcccCH
Confidence 5899999999987664333
No 15
>KOG1617|consensus
Probab=27.63 E-value=36 Score=26.29 Aligned_cols=33 Identities=24% Similarity=0.300 Sum_probs=24.4
Q ss_pred HHhhhccceeccCCCCChhhHHHHHHHHhhhHHHH
Q psy3233 17 EDYWVQRYIIQNESNVPSFLEHVKDKILRTGKYLN 51 (116)
Q Consensus 17 d~~W~~rY~lr~~~~iP~FL~~~a~kIL~TGK~lN 51 (116)
|-|=..||.++. .+=+||+++|+|+|.|==++.
T Consensus 111 DGyIARk~~l~S--~~Gs~LDPlADkvlit~~~l~ 143 (243)
T KOG1617|consen 111 DGYIARKMRLGS--IAGSVLDPLADKVLITCLTLC 143 (243)
T ss_pred HHHHHhhccccc--hhhhccChHHHHHHHHHHHHH
Confidence 344455556554 488999999999999877766
No 16
>KOG0099|consensus
Probab=25.59 E-value=27 Score=27.98 Aligned_cols=30 Identities=33% Similarity=0.615 Sum_probs=23.7
Q ss_pred HHhhhccceeccCCCCChhhHH---HHHHHHhhhHH
Q psy3233 17 EDYWVQRYIIQNESNVPSFLEH---VKDKILRTGKY 49 (116)
Q Consensus 17 d~~W~~rY~lr~~~~iP~FL~~---~a~kIL~TGK~ 49 (116)
...|+.|+-=.-+ |--||++ +|+||+ +|||
T Consensus 259 ksiWnNRwL~tis--vIlFLNKqDllaeKi~-Agk~ 291 (379)
T KOG0099|consen 259 KSIWNNRWLRTIS--VILFLNKQDLLAEKIL-AGKS 291 (379)
T ss_pred HHHHhhhHHhhhh--eeEEecHHHHHHHHHH-cchh
Confidence 3789999854444 7889988 899986 7999
No 17
>KOG4186|consensus
Probab=24.20 E-value=68 Score=24.70 Aligned_cols=20 Identities=35% Similarity=0.526 Sum_probs=17.3
Q ss_pred HHHHHHhhhHHHHHHHHhhC
Q psy3233 39 VKDKILRTGKYLNVIRKCKA 58 (116)
Q Consensus 39 ~a~kIL~TGK~lN~lR~c~~ 58 (116)
.++|+|..||.+|.++.--+
T Consensus 52 ~~RK~~Rl~k~l~~~~~~~~ 71 (233)
T KOG4186|consen 52 LARKVLRLGKDLNMFQAALQ 71 (233)
T ss_pred HHHHHHHhhhhHHHHHHHHh
Confidence 89999999999999887443
No 18
>PHA02972 hypothetical protein; Provisional
Probab=22.37 E-value=57 Score=21.67 Aligned_cols=13 Identities=46% Similarity=0.979 Sum_probs=9.6
Q ss_pred hhhHH-HHHHHHhh
Q psy3233 45 RTGKY-LNVIRKCK 57 (116)
Q Consensus 45 ~TGK~-lN~lR~c~ 57 (116)
.|||+ +|.+|+..
T Consensus 79 ktgKfi~nYIRev~ 92 (109)
T PHA02972 79 KTGKFIINYIREVR 92 (109)
T ss_pred hhhHHHHHHHHHHH
Confidence 49999 56688754
No 19
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=21.29 E-value=2.1e+02 Score=19.64 Aligned_cols=14 Identities=21% Similarity=0.131 Sum_probs=10.2
Q ss_pred hHHHHHHHHhhCCC
Q psy3233 47 GKYLNVIRKCKASV 60 (116)
Q Consensus 47 GK~lN~lR~c~~~~ 60 (116)
=|+|-+|+.||...
T Consensus 56 ~K~Lrilk~l~~~G 69 (122)
T cd03572 56 LKVLKIIKHLCEKG 69 (122)
T ss_pred HHHHHHHHHHHhhC
Confidence 47788888876654
No 20
>PF10126 Nit_Regul_Hom: Uncharacterized protein, homolog of nitrogen regulatory protein PII; InterPro: IPR019296 This family consists of various hypothetical archaeal proteins. It includes a putative nitrogen regulatory protein PII homolog.
Probab=21.27 E-value=61 Score=22.11 Aligned_cols=16 Identities=19% Similarity=0.239 Sum_probs=13.8
Q ss_pred hhhHHHHHHHHhhCCC
Q psy3233 45 RTGKYLNVIRKCKASV 60 (116)
Q Consensus 45 ~TGK~lN~lR~c~~~~ 60 (116)
+.||.||.|-+||...
T Consensus 15 NlGKaINaLte~GITG 30 (110)
T PF10126_consen 15 NLGKAINALTEGGITG 30 (110)
T ss_pred HHHHHHHHHHhcCccE
Confidence 5699999999999874
No 21
>PF07311 Dodecin: Dodecin; InterPro: IPR009923 This entry represents proteins with a Dodecin-like topology. Dodecin flavoprotein is a small dodecameric flavin-binding protein from Halobacterium salinarium (Halobacterium halobium) that contains two flavins stacked in a single binding pocket between two tryptophan residues to form an aromatic tetrade []. Dodecin binds riboflavin, although it appears to have a broad specificity for flavins. Lumichrome, a molecule associated with flavin metabolism, appears to be a ligand of dodecin, which could act as a waste-trapping device. ; PDB: 2VYX_L 2DEG_F 2V18_K 2V19_D 2UX9_B 2CZ8_E 2V21_F 2CC8_A 2CCB_A 2VX9_A ....
Probab=20.95 E-value=97 Score=19.12 Aligned_cols=21 Identities=19% Similarity=0.126 Sum_probs=18.5
Q ss_pred chhHHHHHHHHHHHHHHHHHH
Q psy3233 82 TDSALIRMIDEAYHFASSSLL 102 (116)
Q Consensus 82 ~~~~~~~~Id~ay~~As~~Ll 102 (116)
...++++.|+.|-.+|++.|-
T Consensus 12 S~~S~edAv~~Av~~A~kTl~ 32 (66)
T PF07311_consen 12 SPKSWEDAVQNAVARASKTLR 32 (66)
T ss_dssp ESSHHHHHHHHHHHHHHHHSS
T ss_pred CCCCHHHHHHHHHHHHhhchh
Confidence 478899999999999999864
No 22
>PHA03165 hypothetical protein; Provisional
Probab=20.55 E-value=19 Score=21.01 Aligned_cols=21 Identities=24% Similarity=0.610 Sum_probs=15.0
Q ss_pred CCCHHhhhccceeccCCCCChh
Q psy3233 14 KYSEDYWVQRYIIQNESNVPSF 35 (116)
Q Consensus 14 ~~~d~~W~~rY~lr~~~~iP~F 35 (116)
...|.+|+.-|.+... .+-.|
T Consensus 13 rgadefwegtyilvva-fvlaf 33 (57)
T PHA03165 13 RGADEFWEGTYILVVA-FVLAF 33 (57)
T ss_pred CCchhhhcceehhHHH-HHHHH
Confidence 4568999999988765 44444
Done!