Query psy3233
Match_columns 116
No_of_seqs 102 out of 291
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 19:46:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3233.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3233hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rip_A Gamma-tubulin complex c 99.8 1.9E-19 6.4E-24 151.2 4.3 99 17-116 250-355 (677)
2 1wq6_A AML1-ETO; NHR2, oncopro 52.0 11 0.00039 22.7 2.6 46 8-58 7-52 (72)
3 2j5d_A BNIP3 TM, BCL2/adenovir 22.7 1.1E+02 0.0036 16.8 3.2 23 34-56 19-42 (45)
4 2r28_C Serine/threonine-protei 21.4 50 0.0017 16.1 1.5 15 39-53 8-22 (26)
5 1nla_A Transcriptional repress 20.7 57 0.002 19.1 2.0 27 22-52 8-35 (64)
6 2cc6_A VNG1446H, dodecin; flav 19.6 50 0.0017 19.7 1.6 22 82-103 12-33 (68)
7 2lyc_A Spindle and kinetochore 19.2 35 0.0012 22.9 0.9 17 45-61 99-116 (130)
8 2ux9_A Dodecin; flavoprotein; 19.1 52 0.0018 19.6 1.6 22 82-103 14-35 (69)
9 2yiz_A Dodecin; flavoprotein, 18.9 58 0.002 19.4 1.7 22 82-103 14-35 (69)
10 2vxa_A Dodecin; flavoprotein, 18.3 56 0.0019 19.7 1.6 22 82-103 15-36 (72)
No 1
>3rip_A Gamma-tubulin complex component 4; helix bundles, gamma-tubulin ring complex, gamma-TURC, struc protein; 2.30A {Homo sapiens}
Probab=99.76 E-value=1.9e-19 Score=151.25 Aligned_cols=99 Identities=14% Similarity=0.258 Sum_probs=72.4
Q ss_pred HHhhhccceeccCCCCChhhHH-HHHHHHhhhHHHHHHHHhhCCCcchhh--hhHHhh---hhhhc-cccCCchhHHHHH
Q psy3233 17 EDYWVQRYIIQNESNVPSFLEH-VKDKILRTGKYLNVIRKCKASVQSKCL--LDKQRQ---RAAEM-KYMESTDSALIRM 89 (116)
Q Consensus 17 d~~W~~rY~lr~~~~iP~FL~~-~a~kIL~TGK~lN~lR~c~~~~~~~~~--~~~~~~---~~~~l-~~~~~~~~~~~~~ 89 (116)
.+||+++|+||.+ |||.||++ +|+|||.||||+||||+||...+.... .+...+ ....+ ..+..+...|+..
T Consensus 250 ~~~w~~~y~l~~~-~lP~Fl~~~~A~kIl~~GKsln~lr~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~e~~ 328 (677)
T 3rip_A 250 LAPSLKQFSLRVE-ILPSYIPVRVAEKILFVGESVQMFENQNVNLTRKGSILKNQEDTFAAELHRLKQQPLFSLVDFEQV 328 (677)
T ss_dssp ---CCCCEEECGG-GSCTTSCHHHHHHHHHHHHHHHTCCC-CCSCC---CTTCSHHHHHHHHHHHHHTCSSCCHHHHHHH
T ss_pred ccchhcceeecHh-hCcCccCHHHHHHHHHhhHHHHHHHccCCCCCcccccccchHHHHHHHHHHHhccccCCHHHHHHH
Confidence 3689999999999 99999987 999999999999999998865321100 000000 00111 1111357799999
Q ss_pred HHHHHHHHHHHHHHHHhccccchhccC
Q psy3233 90 IDEAYHFASSSLLTLLMQDYDLVNRIR 116 (116)
Q Consensus 90 Id~ay~~As~~Ll~lL~~~~~L~~hL~ 116 (116)
|+++|..||+.|+++|+++|+|++||+
T Consensus 329 I~~~~~~as~~Ll~lL~~~~~L~~hL~ 355 (677)
T 3rip_A 329 VDRIRSTVAEHLWKLMVEESDLLGQLK 355 (677)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 999999999999999999999999984
No 2
>1wq6_A AML1-ETO; NHR2, oncoprotein; 2.00A {Homo sapiens}
Probab=52.00 E-value=11 Score=22.74 Aligned_cols=46 Identities=20% Similarity=0.600 Sum_probs=33.4
Q ss_pred cccCCCCCCHHhhhccceeccCCCCChhhHHHHHHHHhhhHHHHHHHHhhC
Q psy3233 8 NDVLDGKYSEDYWVQRYIIQNESNVPSFLEHVKDKILRTGKYLNVIRKCKA 58 (116)
Q Consensus 8 k~~l~~~~~d~~W~~rY~lr~~~~iP~FL~~~a~kIL~TGK~lN~lR~c~~ 58 (116)
++.++.-..+.-|.+... .+|.-|+-+..+|=.|-.+|.|||+|..
T Consensus 7 ~e~~~~~~~~~~~~eeWk-----hi~~mLnCI~~MVEKTrRsltvLrRcQe 52 (72)
T 1wq6_A 7 EEMIDHRLTDREWAEEWK-----HLDHLLNCIMDMVEKTRRSLTVLRRCQE 52 (72)
T ss_dssp ----CCSCCHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcccCCCccHHHHHH-----hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666666666553 5788888899999999999999999976
No 3
>2j5d_A BNIP3 TM, BCL2/adenovirus E1B 19 kDa protein-interacting protein 3; membrane protein, mitochondrion, transmembrane, transmembrane domain, membrane; NMR {Homo sapiens} PDB: 2ka1_A 2ka2_A
Probab=22.68 E-value=1.1e+02 Score=16.84 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=18.3
Q ss_pred hhhHH-HHHHHHhhhHHHHHHHHh
Q psy3233 34 SFLEH-VKDKILRTGKYLNVIRKC 56 (116)
Q Consensus 34 ~FL~~-~a~kIL~TGK~lN~lR~c 56 (116)
.|+++ +...||.+|=+|++=|+.
T Consensus 19 ~~~psll~shiL~~GlgIyIGkRL 42 (45)
T 2j5d_A 19 VFLPSLLLSHLLAIGLGIYIGRRL 42 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHhcceEEeeeee
Confidence 36667 899999999999886653
No 4
>2r28_C Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform; protein-peptide complex, acetylation, calcium, methylation; 1.86A {Homo sapiens} PDB: 2jzi_B
Probab=21.38 E-value=50 Score=16.07 Aligned_cols=15 Identities=33% Similarity=0.554 Sum_probs=12.1
Q ss_pred HHHHHHhhhHHHHHH
Q psy3233 39 VKDKILRTGKYLNVI 53 (116)
Q Consensus 39 ~a~kIL~TGK~lN~l 53 (116)
+-+||+..||--.+.
T Consensus 8 ir~KI~aigkmsRmf 22 (26)
T 2r28_C 8 IRNKIRAIGKMARVF 22 (26)
T ss_pred HHHHHHHHHHHHHHH
Confidence 789999999976543
No 5
>1nla_A Transcriptional repressor ARC; 3(10) helix, beta-ribbon, beta-sheet, structural switching; NMR {Enterobacteria phage P22} SCOP: a.43.1.1
Probab=20.68 E-value=57 Score=19.05 Aligned_cols=27 Identities=15% Similarity=0.278 Sum_probs=21.1
Q ss_pred ccceeccCCCCChhhHH-HHHHHHhhhHHHHH
Q psy3233 22 QRYIIQNESNVPSFLEH-VKDKILRTGKYLNV 52 (116)
Q Consensus 22 ~rY~lr~~~~iP~FL~~-~a~kIL~TGK~lN~ 52 (116)
.+|+|| ||.=|-. ++..--.-|+|+|-
T Consensus 8 ~~f~lR----lp~eLh~~l~~~A~~~GrSlN~ 35 (64)
T 1nla_A 8 PQFLNR----WPREVLDLVRKVAEENGRSVNS 35 (64)
T ss_dssp CGGGGS----SCHHHHHHHHHHHHHHTSCHHH
T ss_pred CceEee----CCHHHHHHHHHHHHHhCCCHHH
Confidence 467776 6777766 88888889999996
No 6
>2cc6_A VNG1446H, dodecin; flavoprotein, flavin, flavin-like ligands; HET: LUM; 1.27A {Halobacterium salinarum} SCOP: d.230.2.1 PDB: 2cc7_A* 2cc8_A* 2cc9_A 2ccb_A* 2ccc_A* 2cif_A* 2cjc_A* 1mog_A* 2vx9_A* 2cie_A* 2vkf_A* 2vkg_A*
Probab=19.58 E-value=50 Score=19.66 Aligned_cols=22 Identities=18% Similarity=0.247 Sum_probs=18.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHH
Q psy3233 82 TDSALIRMIDEAYHFASSSLLT 103 (116)
Q Consensus 82 ~~~~~~~~Id~ay~~As~~Ll~ 103 (116)
.+.++++.|+.|-.+||+.|-+
T Consensus 12 S~~S~edAi~nAi~~AskTl~n 33 (68)
T 2cc6_A 12 SEESFTAAADDAIDRAEDTLDN 33 (68)
T ss_dssp ESSCHHHHHHHHHHHHHHHCSC
T ss_pred CCCCHHHHHHHHHHHHHhcccC
Confidence 4678999999999999998754
No 7
>2lyc_A Spindle and kinetochore-associated protein 1 HOMO; SKA1, microtubule, SKA1-MTBD, protein binding; NMR {Caenorhabditis elegans}
Probab=19.15 E-value=35 Score=22.85 Aligned_cols=17 Identities=6% Similarity=0.038 Sum_probs=13.1
Q ss_pred hhhHH-HHHHHHhhCCCc
Q psy3233 45 RTGKY-LNVIRKCKASVQ 61 (116)
Q Consensus 45 ~TGK~-lN~lR~c~~~~~ 61 (116)
.|||. |++||+|+.-..
T Consensus 99 kt~~~~L~iLRHl~RL~E 116 (130)
T 2lyc_A 99 PSFAKAIPCLRHIRRIRE 116 (130)
T ss_dssp SCHHHHHHHHHTTTSCCC
T ss_pred hhhhHHHHHHHhhchHHH
Confidence 46666 999999998644
No 8
>2ux9_A Dodecin; flavoprotein; HET: FMN COA; 1.4A {Thermus thermophilus} SCOP: d.230.2.1 PDB: 2cz8_A* 2deg_A 2deh_A 2dev_A 2v21_A* 2v18_A* 2vyx_A* 2v19_A*
Probab=19.12 E-value=52 Score=19.64 Aligned_cols=22 Identities=23% Similarity=0.206 Sum_probs=18.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHH
Q psy3233 82 TDSALIRMIDEAYHFASSSLLT 103 (116)
Q Consensus 82 ~~~~~~~~Id~ay~~As~~Ll~ 103 (116)
...++++.|+.|-.+||+.|-+
T Consensus 14 S~~S~edAi~nAi~~AskTl~n 35 (69)
T 2ux9_A 14 SEEGLEAAIQAALARARKTLRH 35 (69)
T ss_dssp ESSCHHHHHHHHHHHHHHHCCC
T ss_pred CCCCHHHHHHHHHHHHHhcccC
Confidence 4778999999999999998743
No 9
>2yiz_A Dodecin; flavoprotein, flavin binding protein, protein-engineering, P storage protein; HET: COA FMN GOL; 1.70A {Mycobacterium tuberculosis} PDB: 3oqt_A 2yj0_A*
Probab=18.92 E-value=58 Score=19.44 Aligned_cols=22 Identities=9% Similarity=0.086 Sum_probs=18.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHH
Q psy3233 82 TDSALIRMIDEAYHFASSSLLT 103 (116)
Q Consensus 82 ~~~~~~~~Id~ay~~As~~Ll~ 103 (116)
...++++.|+.|-.+|++.|-+
T Consensus 14 S~~S~edAi~nAi~~AskTl~n 35 (69)
T 2yiz_A 14 SPDGVDAAIQGGLARAAQTMRA 35 (69)
T ss_dssp ETTCHHHHHHHHHHHHHHHCCC
T ss_pred CCCCHHHHHHHHHHHHHhcccC
Confidence 4778999999999999998743
No 10
>2vxa_A Dodecin; flavoprotein, flavin, riboflavin, lumichrome, archaea; HET: RBF; 2.60A {Halorhodospira halophila}
Probab=18.30 E-value=56 Score=19.68 Aligned_cols=22 Identities=14% Similarity=0.182 Sum_probs=18.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHH
Q psy3233 82 TDSALIRMIDEAYHFASSSLLT 103 (116)
Q Consensus 82 ~~~~~~~~Id~ay~~As~~Ll~ 103 (116)
...++++.|+.|-.+||+.|-+
T Consensus 15 S~~S~edAi~nAi~~AskTl~n 36 (72)
T 2vxa_A 15 SPNGIEEAVNNAIARAGETLRH 36 (72)
T ss_dssp ESSCHHHHHHHHHHHHHHHCCC
T ss_pred CCCCHHHHHHHHHHHHHhhccC
Confidence 4778999999999999998743
Done!