Query psy3233
Match_columns 116
No_of_seqs 102 out of 291
Neff 6.8
Searched_HMMs 13730
Date Fri Aug 16 19:47:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3233.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/3233hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1lzia_ c.68.1.9 (A:) Glycosyl 33.3 2.1 0.00015 30.8 -1.7 15 42-56 57-71 (283)
2 d2a1va1 d.198.3.1 (A:4-134) Hy 28.9 15 0.0011 22.4 2.1 35 81-115 96-131 (131)
3 d2ikba1 d.2.1.9 (A:1-163) Hypo 28.7 7.9 0.00057 25.2 0.8 55 2-60 47-105 (163)
4 d1o7qa_ c.68.1.9 (A:) alpha-1, 25.5 5.4 0.00039 28.6 -0.6 28 84-111 112-139 (287)
5 d2cc6a1 d.230.2.1 (A:2-65) Fla 24.2 16 0.0012 20.2 1.4 22 82-103 11-32 (64)
6 d2ux9a1 d.230.2.1 (A:2-67) Unc 22.5 18 0.0013 20.1 1.4 22 82-103 13-34 (66)
7 d1h3oa_ a.22.1.3 (A:) TAF(II)- 19.4 18 0.0013 19.1 0.9 11 39-49 8-18 (50)
8 d1ln1a_ d.129.3.2 (A:) Phospha 19.4 41 0.003 21.0 3.0 27 30-58 174-201 (203)
9 d1wira_ g.37.1.5 (A:) Protein 17.7 25 0.0018 21.6 1.5 17 44-60 55-71 (121)
10 d1s2xa_ a.47.3.1 (A:) Cag-Z {H 13.5 44 0.0032 21.0 1.8 25 31-55 136-167 (180)
No 1
>d1lzia_ c.68.1.9 (A:) Glycosyltransferase A catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.27 E-value=2.1 Score=30.85 Aligned_cols=15 Identities=13% Similarity=0.403 Sum_probs=12.3
Q ss_pred HHHhhhHHHHHHHHh
Q psy3233 42 KILRTGKYLNVIRKC 56 (116)
Q Consensus 42 kIL~TGK~lN~lR~c 56 (116)
-++.||||++|++.-
T Consensus 57 ~vfATGkY~~Fl~~f 71 (283)
T d1lzia_ 57 TVFAIKKYVAFLKLF 71 (283)
T ss_dssp EEEECGGGGGGHHHH
T ss_pred EEEEeChHHHHHHHH
Confidence 357899999998873
No 2
>d2a1va1 d.198.3.1 (A:4-134) Hypothetical protein DR2400 {Deinococcus radiodurans [TaxId: 1299]}
Probab=28.94 E-value=15 Score=22.38 Aligned_cols=35 Identities=9% Similarity=0.190 Sum_probs=26.8
Q ss_pred CchhHHHHHHHHHHHHHH-HHHHHHHhccccchhcc
Q psy3233 81 STDSALIRMIDEAYHFAS-SSLLTLLMQDYDLVNRI 115 (116)
Q Consensus 81 ~~~~~~~~~Id~ay~~As-~~Ll~lL~~~~~L~~hL 115 (116)
.+...+.++|+.+|..+. +.|-+-......|.++|
T Consensus 96 v~~~~l~~ll~~Sy~lV~~k~l~K~~~~~l~~~~~~ 131 (131)
T d2a1va1 96 VPAELLGELLRGSYLLVTKKGFTKAERKELGLPDSL 131 (131)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHSCHHHHHHHTCCSSC
T ss_pred CCHHHHHHHHHHHHHHHhcccCCHHHHHHcCCCCCC
Confidence 578899999999999975 45777666666666654
No 3
>d2ikba1 d.2.1.9 (A:1-163) Hypothetical protein NMB1012 {Neisseria meningitidis [TaxId: 487]}
Probab=28.71 E-value=7.9 Score=25.20 Aligned_cols=55 Identities=11% Similarity=0.329 Sum_probs=37.2
Q ss_pred cccccccccCCCCCCHHhhhccceeccCCCCChhhHH-HHHHHHhhh--HHHHHHHH-hhCCC
Q psy3233 2 SIEKLENDVLDGKYSEDYWVQRYIIQNESNVPSFLEH-VKDKILRTG--KYLNVIRK-CKASV 60 (116)
Q Consensus 2 ~~~~~~k~~l~~~~~d~~W~~rY~lr~~~~iP~FL~~-~a~kIL~TG--K~lN~lR~-c~~~~ 60 (116)
++++++++...+.|...||.. ++-+ .+|.=|.. +-+...+.| ..+-+|.+ |+..+
T Consensus 47 dv~~lt~~~a~~iY~~~YW~~---~~~d-~l~~~la~~~FD~aVN~G~~~A~k~LQ~al~v~v 105 (163)
T d2ikba1 47 SMRAMTREQAISIYRKAFWER---YRAD-QMPEAVAFQFFDACVNHGYGNAARMLQRAAGVPD 105 (163)
T ss_dssp CGGGCCHHHHHHHHHHHTTTT---TTGG-GSCHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCC
T ss_pred HHHHCCHHHHHHHHHHHccch---hccc-ccCHHHHHHHHhHhhcCCccHHHHHHHHHhCccc
Confidence 467788888888888999975 3445 67854444 445544555 77888888 55544
No 4
>d1o7qa_ c.68.1.9 (A:) alpha-1,3-galactosyltransferase catalytic domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=25.48 E-value=5.4 Score=28.60 Aligned_cols=28 Identities=4% Similarity=0.051 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy3233 84 SALIRMIDEAYHFASSSLLTLLMQDYDL 111 (116)
Q Consensus 84 ~~~~~~Id~ay~~As~~Ll~lL~~~~~L 111 (116)
..+...=-..++.-++.+.+.+..++|.
T Consensus 112 ~~Wp~iTL~Rm~~i~~~i~~~~~~e~Dy 139 (287)
T d1o7qa_ 112 KRWQDISMMRMKTIGEHIVAHIQHEVDF 139 (287)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTHHHHCSE
T ss_pred CCCchhHHHHHHHHHHHHHHhhhccCCe
Confidence 3466666667777777777766666654
No 5
>d2cc6a1 d.230.2.1 (A:2-65) Flavin-binding protein dodecin {Archaeon Halobacterium salinarum [TaxId: 2242]}
Probab=24.18 E-value=16 Score=20.20 Aligned_cols=22 Identities=18% Similarity=0.247 Sum_probs=18.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHH
Q psy3233 82 TDSALIRMIDEAYHFASSSLLT 103 (116)
Q Consensus 82 ~~~~~~~~Id~ay~~As~~Ll~ 103 (116)
.+.++++.|+.|-.+||+.|-+
T Consensus 11 S~~S~edAi~~Ai~~AskTl~n 32 (64)
T d2cc6a1 11 SEESFTAAADDAIDRAEDTLDN 32 (64)
T ss_dssp ESSCHHHHHHHHHHHHHHHCSC
T ss_pred CCCCHHHHHHHHHHHHhhCccC
Confidence 4778999999999999998753
No 6
>d2ux9a1 d.230.2.1 (A:2-67) Uncharacterized protein TTHA1431 {Thermus thermophilus [TaxId: 274]}
Probab=22.51 E-value=18 Score=20.11 Aligned_cols=22 Identities=23% Similarity=0.206 Sum_probs=18.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHH
Q psy3233 82 TDSALIRMIDEAYHFASSSLLT 103 (116)
Q Consensus 82 ~~~~~~~~Id~ay~~As~~Ll~ 103 (116)
.+.++++.|+.|-.+||+.|-+
T Consensus 13 S~~S~edAi~~Ai~~AskTl~n 34 (66)
T d2ux9a1 13 SEEGLEAAIQAALARARKTLRH 34 (66)
T ss_dssp ESSCHHHHHHHHHHHHHHHCCC
T ss_pred CCCCHHHHHHHHHHHhhhCccC
Confidence 4778999999999999998743
No 7
>d1h3oa_ a.22.1.3 (A:) TAF(II)-135, (TAF(II)-130, hTAF4), histone fold domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.42 E-value=18 Score=19.10 Aligned_cols=11 Identities=36% Similarity=0.643 Sum_probs=8.9
Q ss_pred HHHHHHhhhHH
Q psy3233 39 VKDKILRTGKY 49 (116)
Q Consensus 39 ~a~kIL~TGK~ 49 (116)
+..+|+.+||-
T Consensus 8 Lq~ri~~I~~k 18 (50)
T d1h3oa_ 8 LQRRILEIGKK 18 (50)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 88888888874
No 8
>d1ln1a_ d.129.3.2 (A:) Phosphatidylcholine transfer protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.39 E-value=41 Score=21.01 Aligned_cols=27 Identities=15% Similarity=0.309 Sum_probs=19.3
Q ss_pred CCCChhhHH-HHHHHHhhhHHHHHHHHhhC
Q psy3233 30 SNVPSFLEH-VKDKILRTGKYLNVIRKCKA 58 (116)
Q Consensus 30 ~~iP~FL~~-~a~kIL~TGK~lN~lR~c~~ 58 (116)
|.||.||-. ++.+. .-+.++-||+|+.
T Consensus 174 G~iP~~lvn~~~~~~--~~~~~~~l~k~~~ 201 (203)
T d1ln1a_ 174 GQIPSWLINWAAKNG--VPNFLKDMARACQ 201 (203)
T ss_dssp SCCCHHHHHHHHHTH--HHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHH--HHHHHHHHHHHHh
Confidence 479999888 44442 3388888998764
No 9
>d1wira_ g.37.1.5 (A:) Protein arginine N-methyltransferase 3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=17.70 E-value=25 Score=21.63 Aligned_cols=17 Identities=29% Similarity=0.243 Sum_probs=12.6
Q ss_pred HhhhHHHHHHHHhhCCC
Q psy3233 44 LRTGKYLNVIRKCKASV 60 (116)
Q Consensus 44 L~TGK~lN~lR~c~~~~ 60 (116)
+..=|-||+||.+....
T Consensus 55 Y~~IKLINYIR~~~~~~ 71 (121)
T d1wira_ 55 YGYIKLINFIRLKNPTV 71 (121)
T ss_dssp HHHHHHHHHHHHTCCCH
T ss_pred cceEEEEeeeecccCch
Confidence 44558899999986653
No 10
>d1s2xa_ a.47.3.1 (A:) Cag-Z {Helicobacter pylori [TaxId: 210]}
Probab=13.48 E-value=44 Score=20.98 Aligned_cols=25 Identities=40% Similarity=0.574 Sum_probs=18.5
Q ss_pred CCChhhHH----HHHHHHhh---hHHHHHHHH
Q psy3233 31 NVPSFLEH----VKDKILRT---GKYLNVIRK 55 (116)
Q Consensus 31 ~iP~FL~~----~a~kIL~T---GK~lN~lR~ 55 (116)
.+|.|+.- +|-.||.. ||.+|-|-+
T Consensus 136 ylppfidgnmmgvafqilgiddfgkklneivq 167 (180)
T d1s2xa_ 136 YLPPFIDGNMMGVAFQILGIDDFGKKLNEIVQ 167 (180)
T ss_dssp GCCTTCCHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred hCCCccCCccceeeeeeecchhHhHHHHHHHH
Confidence 58999965 78888865 788876543
Done!