RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3233
(116 letters)
>gnl|CDD|217915 pfam04130, Spc97_Spc98, Spc97 / Spc98 family. The spindle pole
body (SPB) functions as the microtubule-organising
centre in yeast. Members of this family are spindle pole
body (SBP) components such as Spc97 and Spc98 that form
a complex with gamma-tubulin. This family of proteins
includes the grip motif 1 and grip moti 2.
Length = 528
Score = 76.8 bits (189), Expect = 1e-17
Identities = 39/120 (32%), Positives = 62/120 (51%), Gaps = 7/120 (5%)
Query: 3 IEKLENDVLDGKYSEDYWVQRYIIQNESNVPSFL-EHVKDKILRTGKYLNVIRKCKASVQ 61
I++ E++ + S++YW +RY + E +PSFL + + KIL GK LN +R+C S
Sbjct: 193 IKENESEEVLSDDSDEYWEERYTL-REDMLPSFLPKELARKILEIGKSLNFLRECCKSHP 251
Query: 62 SKCLLDKQRQRAAEMKYMES-----TDSALIRMIDEAYHFASSSLLTLLMQDYDLVNRIR 116
+ + SAL +ID AY AS SLL LL+++YDL+ ++
Sbjct: 252 LAKDQSLALSLREALVSLLKLFSSLDTSALELLIDSAYLEASKSLLDLLLEEYDLLGHLQ 311
>gnl|CDD|197283 cd09187, PLDc_FAM83G_N, N-terminal phospholipase D-like domain of
the uncharacterized protein Family with sequence
similarity 83G. N-terminal phospholipase D (PLD)-like
domain of the uncharacterized protein, Family with
sequence similarity 83G (FAM83G). Since the N-terminal
PLD-like domain of FAM83 proteins shows only trace
similarity to the PLD catalytic domain and lacks the
functionally important histidine residue, FAM83 proteins
may share a similar three-dimensional fold with PLD
enzymes, but are most unlikely to carry PLD activity.
The N-terminus of FAM83G shows high homology to other
FAM83 family members, indicating that FAM83G might have
arisen early in vertebrate evolution by duplication of a
gene in the FAM83 family.
Length = 275
Score = 27.9 bits (62), Expect = 1.2
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 9 DVLDGKYSEDYWVQRYIIQNESNVPSFLEHVKDKILRTGKYLNV-IRKC 56
D+LD + V YII +E+NV FL+ + + G N+ +R C
Sbjct: 159 DLLDAGFKRK--VPVYIILDETNVKYFLQMCERAQMHRGHLKNLRVRSC 205
>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein
Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family;
Fes subfamily; catalytic (c) domain. Fes subfamily
members include Fes (or Fps), Fer, and similar proteins.
The PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Fes
subfamily proteins are cytoplasmic (or nonreceptor) tyr
kinases containing an N-terminal region with FCH
(Fes/Fer/CIP4 homology) and coiled-coil domains,
followed by a SH2 domain, and a C-terminal catalytic
domain. The genes for Fes (feline sarcoma) and Fps
(Fujinami poultry sarcoma) were first isolated from
tumor-causing retroviruses. The viral oncogenes encode
chimeric Fes proteins consisting of Gag sequences at the
N-termini, resulting in unregulated tyr kinase activity.
Fes and Fer kinases play roles in haematopoiesis,
inflammation and immunity, growth factor signaling,
cytoskeletal regulation, cell migration and adhesion,
and the regulation of cell-cell interactions. Fes and
Fer show redundancy in their biological functions.
Length = 251
Score = 27.0 bits (60), Expect = 2.4
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 47 GKYLNVIRKCKASVQSKCLLDKQRQRAAEMKYMES 81
G L +RK K + K LL AA M+Y+ES
Sbjct: 77 GSLLTFLRKKKNRLTVKKLLQMSLDAAAGMEYLES 111
>gnl|CDD|218881 pfam06070, Herpes_UL32, Herpesvirus large structural phosphoprotein
UL32. The large phosphorylated protein (UL32-like) of
herpes viruses is the polypeptide most frequently
reactive in immuno-blotting analyses with antisera when
compared with other viral proteins.
Length = 777
Score = 27.2 bits (60), Expect = 2.5
Identities = 18/117 (15%), Positives = 42/117 (35%), Gaps = 12/117 (10%)
Query: 4 EKLENDVLDGKYSEDYWVQRYIIQNESNVPSFLEHVKDKILRTGKYLNVIRKCKASVQSK 63
++LE ++ + + + N L + +K++ G+ + + ++ K
Sbjct: 159 QELEENLRAA-RNNMLVYTVLDLNDPRNENGPLVNAVNKLVYLGRLILALSTSWRELEKK 217
Query: 64 CLLDKQRQRAAEMKYMESTDS--------ALIRMIDEAYHFASSSLLTLLMQDYDLV 112
CL +K + S L +D + +LL L +D+D+
Sbjct: 218 CLDRINELCKRLVKELRRCPSFASVYCRNILKHPVD---GTSVDTLLERLEEDFDIY 271
>gnl|CDD|240214 cd05710, SIS_1, A subgroup of the SIS domain. SIS (Sugar
ISomerase) domains are found in many phosphosugar
isomerases and phosphosugar binding proteins. SIS
domains are also found in proteins that regulate the
expression of genes involved in synthesis of
phosphosugars.
Length = 120
Score = 26.0 bits (58), Expect = 4.0
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 24 YIIQNESNVPSFLEHVKDKILRTGKYLN 51
Y ++ ES +P F+ + + + K L
Sbjct: 19 YFLKKESKLPVFVYNAAEFLHTGPKRLT 46
>gnl|CDD|235053 PRK02610, PRK02610, histidinol-phosphate aminotransferase;
Provisional.
Length = 374
Score = 26.2 bits (58), Expect = 4.6
Identities = 13/36 (36%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 73 AAEMKYMESTDSALIRMIDEAY-HFASSSLLTLLMQ 107
AAE++++ S ++ +IDEAY F+ ++L+ L Q
Sbjct: 187 AAELEWLRSLPEDILVVIDEAYFEFSQTTLVGELAQ 222
>gnl|CDD|213552 TIGR00691, spoT_relA, (p)ppGpp synthetase, RelA/SpoT family. The
functions of E. coli RelA and SpoT differ somewhat. RelA
(EC 2.7.6.5) produces pppGpp (or ppGpp) from ATP and GTP
(or GDP). SpoT (EC 3.1.7.2) degrades ppGpp, but may also
act as a secondary ppGpp synthetase. The two proteins
are strongly similar. In many species, a single homolog
to SpoT and RelA appears reponsible for both ppGpp
synthesis and ppGpp degradation. (p)ppGpp is a
regulatory metabolite of the stringent response, but
appears also to be involved in antibiotic biosynthesis
in some species [Cellular processes, Adaptations to
atypical conditions].
Length = 683
Score = 26.2 bits (58), Expect = 5.4
Identities = 9/32 (28%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 65 LLDKQRQRAAEMKYMESTDSALIRMIDEAYHF 96
L++ Q++ A +++E+ S L +E Y F
Sbjct: 336 LVEWQQESANFFEFIENLKSDLFN--EEIYVF 365
>gnl|CDD|132524 TIGR03485, cas_csx13_N, CRISPR-associated protein Cas8a1/Csx13,
MYXAN subtype. Members of this family are found among
cas (CRISPR-Associated) genes close to CRISPR repeats in
Leptospira interrogans (a spirochete), Myxococcus
xanthus (a delta-proteobacterium), and Lyngbya sp. PCC
8106 (a cyanobacterium). It is found with other cas
genes in Anabaena variabilis ATCC 29413. In Lyngbya sp.,
the protein is split into two tandem genes. This model
corresponds to the N-terminal region or upstream gene;
the C-terminal region is described by TIGR03486.
CRISPR/cas systems are associated with prokaryotic
acquired resistance to phage and other exogenous DNA.
Length = 316
Score = 26.0 bits (57), Expect = 5.4
Identities = 8/40 (20%), Positives = 16/40 (40%)
Query: 47 GKYLNVIRKCKASVQSKCLLDKQRQRAAEMKYMESTDSAL 86
K N + C+ V +KQ++ A + + T+
Sbjct: 260 NKKDNSLNGCEVIVIGTVAWNKQQKVRALVMRIHPTEKVN 299
>gnl|CDD|187844 cd09713, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c.
CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Large proteins, some contain Zn-finger domain; signature
gene for I-C subtype; also known as Csx13_N family.
Length = 316
Score = 26.0 bits (57), Expect = 5.5
Identities = 8/40 (20%), Positives = 16/40 (40%)
Query: 47 GKYLNVIRKCKASVQSKCLLDKQRQRAAEMKYMESTDSAL 86
K N + C+ V +KQ++ A + + T+
Sbjct: 260 NKKDNSLNGCEVIVIGTVAWNKQQKVRALVMRIHPTEKVN 299
>gnl|CDD|133046 cd06424, UGGPase, UGGPase catalyzes the synthesis of
UDP-Glucose/UDP-Galactose. UGGPase:
UDP-Galactose/Glucose Pyrophosphorylase catalyzes the
reversible production of UDP-Glucose/UDP-Galactose and
pyrophosphate (PPi) from
Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its
dual substrate specificity distinguishes it from the
single substrate enzyme UDP-glucose pyrophosphorylase.
It may play a key role in the galactose metabolism in
raffinose oligosaccharide (RFO) metabolizing plants. RFO
raffinose is a major photoassimilate and is a
galactosylderivative of sucrose (Suc) containing a
galactose (Gal) moiety. Upon arriving at the sink
tissue, the Gal moieties of the RFOs are initially
removed by alpha-galactosidase and then are
phosphorylated to Gal-1-P. Gal-1-P is converted to
UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc
via an epimerase reaction. The UDP-Glc can be directly
utilized in cell wall metabolism or in Suc synthesis.
However, for the Suc synthesis UDP-Glc must be further
metabolized to Glc-1-P. This can be carried out either
by the UGPase in the reverse direction or by the dual
substrate PPase itself operating in the reverse
direction. According to the latter possibility, the
three-step pathway of Gal-1-P to Glc-1-P could be
carried out by a single PPase, functioning sequentially
in reverse directions separated by the epimerase
reaction.
Length = 315
Score = 25.1 bits (55), Expect = 9.3
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 10/35 (28%)
Query: 77 KYMESTDSALIRMIDEAYHFASSSLLTLLMQDYDL 111
KY ++T + F S + L +MQD L
Sbjct: 265 KYKDATKT----------AFKSPTRLECMMQDIPL 289
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.132 0.369
Gapped
Lambda K H
0.267 0.0732 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,681,655
Number of extensions: 464696
Number of successful extensions: 418
Number of sequences better than 10.0: 1
Number of HSP's gapped: 417
Number of HSP's successfully gapped: 25
Length of query: 116
Length of database: 10,937,602
Length adjustment: 79
Effective length of query: 37
Effective length of database: 7,433,636
Effective search space: 275044532
Effective search space used: 275044532
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.2 bits)