RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3233
(116 letters)
>3rip_A Gamma-tubulin complex component 4; helix bundles, gamma-tubulin
ring complex, gamma-TURC, struc protein; 2.30A {Homo
sapiens}
Length = 677
Score = 47.3 bits (111), Expect = 2e-07
Identities = 15/120 (12%), Positives = 51/120 (42%), Gaps = 8/120 (6%)
Query: 4 EKLENDVLDGKYSEDYWVQRYIIQNESNVPSFL-EHVKDKILRTGKYLNVIRKCKASVQS 62
E + +++ + ++++ + +PS++ V +KIL G+ + + ++
Sbjct: 237 ELQDLRLIEEENMLAPSLKQFSL-RVEILPSYIPVRVAEKILFVGESVQMFENQNVNLTR 295
Query: 63 KCLLDKQRQRAAEMK------YMESTDSALIRMIDEAYHFASSSLLTLLMQDYDLVNRIR 116
K + K ++ + + +++D + L L++++ DL+ +++
Sbjct: 296 KGSILKNQEDTFAAELHRLKQQPLFSLVDFEQVVDRIRSTVAEHLWKLMVEESDLLGQLK 355
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.5 bits (73), Expect = 0.019
Identities = 20/122 (16%), Positives = 41/122 (33%), Gaps = 23/122 (18%)
Query: 4 EKLENDVLDGKYSEDYWVQRYI------IQNESNVPSF------LEHVKDKILRTGKYLN 51
+ ++D L Y + Y+ +I I++ + F ++ KI N
Sbjct: 457 KTFDSDDLIPPYLDQYFYS-HIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWN 515
Query: 52 VIRKCKASVQSKCLLDKQRQRAAEMKYMESTDSALIRMIDEAYHFASSSLLTLLMQDY-D 110
S+ + L + + Y+ D R+++ F L+ Y D
Sbjct: 516 ----ASGSILN-TLQQLKFYK----PYICDNDPKYERLVNAILDFLPKIEENLICSKYTD 566
Query: 111 LV 112
L+
Sbjct: 567 LL 568
Score = 31.4 bits (70), Expect = 0.049
Identities = 20/128 (15%), Positives = 46/128 (35%), Gaps = 24/128 (18%)
Query: 1 MSIEKLEN------DVLDGKYSEDYWVQRYIIQNESNVPS-FLEHVKDKILRTGKYLNVI 53
++ +KL +VL+ + + + +++P+ L ++ + +
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS-----LIWFDVIKSDV 404
Query: 54 RKCKASVQSKCLLDKQRQRAA--------EMKYMESTDSALIRMIDEAY----HFASSSL 101
+ L++KQ + + E+K + AL R I + Y F S L
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDL 464
Query: 102 LTLLMQDY 109
+ + Y
Sbjct: 465 IPPYLDQY 472
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 0.22
Identities = 5/18 (27%), Positives = 12/18 (66%), Gaps = 4/18 (22%)
Query: 2 SIEKLENDVLDGK-YSED 18
+++KL+ + K Y++D
Sbjct: 21 ALKKLQASL---KLYADD 35
>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase
domain, multitargeted small M kinase inhibitor; HET:
ITI; 2.70A {Homo sapiens}
Length = 327
Score = 27.2 bits (61), Expect = 1.4
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 47 GKYLNVIRKCKASVQSKCLLDKQRQRAAEMKYMES 81
G L+ +R+ K ++ S+ LL+ Q A M Y+E
Sbjct: 101 GCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLED 135
>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene,
ATP-binding, cell cycle, disea mutation, glycoprotein,
membrane, nucleotide-binding; HET: 03P; 1.50A {Homo
sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A*
1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A*
2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A*
2jiu_A* ...
Length = 327
Score = 25.8 bits (57), Expect = 3.6
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 47 GKYLNVIRKCKASVQSKCLLDKQRQRAAEMKYMES 81
G L+ +R+ K ++ S+ LL+ Q A M Y+E
Sbjct: 101 GCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLED 135
>4e5w_A Tyrosine-protein kinase JAK1; kinase domain,
transferase-transferase inhibit complex; HET: PTR 0NT;
1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A*
3eyh_A*
Length = 302
Score = 25.7 bits (57), Expect = 3.8
Identities = 9/35 (25%), Positives = 12/35 (34%)
Query: 47 GKYLNVIRKCKASVQSKCLLDKQRQRAAEMKYMES 81
G + K K + K L Q M Y+ S
Sbjct: 110 GSLKEYLPKNKNKINLKQQLKYAVQICKGMDYLGS 144
>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive
kinase, HER3, ATP-binding, cell membrane, membrane,
nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB:
3lmg_A*
Length = 325
Score = 25.7 bits (57), Expect = 4.0
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 47 GKYLNVIRKCKASVQSKCLLDKQRQRAAEMKYMES 81
G L+ +R+ + ++ + LL+ Q A M Y+E
Sbjct: 99 GSLLDHVRQHRGALGPQLLLNWGVQIAKGMYYLEE 133
>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP
binding, phosphorylation, intracellular,
transferase-transferase inhibitor complex; HET: IAQ;
1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A*
3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A*
3mj1_A* 3mj2_A*
Length = 267
Score = 25.6 bits (57), Expect = 4.6
Identities = 7/35 (20%), Positives = 13/35 (37%)
Query: 47 GKYLNVIRKCKASVQSKCLLDKQRQRAAEMKYMES 81
G + +R + ++ LL M Y+E
Sbjct: 88 GCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEE 122
>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN
inhibitor, ATP-binding mutation, membrane,
nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A
{Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A*
Length = 327
Score = 25.4 bits (56), Expect = 5.7
Identities = 8/35 (22%), Positives = 17/35 (48%)
Query: 47 GKYLNVIRKCKASVQSKCLLDKQRQRAAEMKYMES 81
G + +++ +A + + LL Q M+Y+ S
Sbjct: 111 GCLRDFLQRHRARLDASRLLLYSSQICKGMEYLGS 145
>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase,
4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3,
2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43;
1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A*
3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A*
1k2p_A
Length = 283
Score = 25.3 bits (56), Expect = 6.0
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 47 GKYLNVIRKCKASVQSKCLLDKQRQRAAEMKYMES 81
G LN +R+ + Q++ LL+ + M+Y+ES
Sbjct: 104 GCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLES 138
>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural
genomics, structural genom consortium, SGC, ATP-binding,
membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A
3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*
Length = 281
Score = 24.9 bits (55), Expect = 6.8
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 50 LNVIRKCKASVQSKCLLDKQRQRAAEMKYMES 81
+ + + K S++ L+ Q M Y+ES
Sbjct: 100 GHYLERNKNSLKVLTLVLYSLQICKAMAYLES 131
>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP
binding, transferase-transfera inhibitor complex; HET:
046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A*
3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A*
3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A*
Length = 295
Score = 24.9 bits (55), Expect = 6.8
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 47 GKYLNVIRKCKASVQSKCLLDKQRQRAAEMKYMES 81
G + ++K K + LL Q M+Y+ +
Sbjct: 98 GSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGT 132
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2,
autoinhibition, ITAM, hydrogen bonding network, TCR
signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Length = 613
Score = 25.3 bits (55), Expect = 7.1
Identities = 5/32 (15%), Positives = 12/32 (37%)
Query: 50 LNVIRKCKASVQSKCLLDKQRQRAAEMKYMES 81
+ + + + + Q + MKY+E
Sbjct: 423 HKFLVGKREEIPVSNVAELLHQVSMGMKYLEE 454
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase,
integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB:
2j0k_A*
Length = 656
Score = 24.8 bits (54), Expect = 8.0
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 48 KYLNVIRKCKASVQSKCLLDKQRQRAAEMKYMES 81
+L + K S+ L+ Q + + Y+ES
Sbjct: 479 SFL---QVRKFSLDLASLILYAYQLSTALAYLES 509
>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase;
2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A*
1u54_A* 3eqr_A* 3eqp_B*
Length = 291
Score = 24.9 bits (55), Expect = 8.1
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 50 LNVIRKCKASVQSKCLLDKQRQRAAEMKYMES 81
L+ +RK + L Q A M Y+ES
Sbjct: 108 LDRLRKHQGHFLLGTLSRYAVQVAEGMGYLES 139
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding,
tyrosine-protein kinase, proto-oncogene, phosphoprotein,
disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo
sapiens}
Length = 326
Score = 24.6 bits (54), Expect = 8.2
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 47 GKYLNVIRKCKASVQSKCLLDKQRQRAAEMKYMES 81
G + ++K K + LL Q M+Y+ +
Sbjct: 129 GSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGT 163
>2h12_A Citrate synthase; acidophIle, acetic acid resistance, allostery,
transferase; HET: CMX; 1.85A {Acetobacter aceti}
Length = 436
Score = 24.9 bits (55), Expect = 8.3
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 26 IQNESNVPSFLEHVKDK 42
I + N+P+F+ VKDK
Sbjct: 286 IGKKENIPAFIAQVKDK 302
>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo
sapiens} SCOP: d.144.1.7
Length = 287
Score = 24.5 bits (54), Expect = 9.5
Identities = 5/32 (15%), Positives = 12/32 (37%)
Query: 50 LNVIRKCKASVQSKCLLDKQRQRAAEMKYMES 81
+ + + + + Q + MKY+E
Sbjct: 97 HKFLVGKREEIPVSNVAELLHQVSMGMKYLEE 128
>3l96_A Citrate synthase; quaternary, hexamer, GRAM-negative bacteri
allostery, oxaloacetate, acetylcoa, NADH, allosteric
enzyme transferase; 1.90A {Escherichia coli} PDB:
3l97_A* 3l98_A* 3l99_A 1k3p_A 1nxe_A 1nxg_A* 1owb_A*
1owc_A 4e6y_A
Length = 426
Score = 24.6 bits (54), Expect = 9.8
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 26 IQNESNVPSFLEHVKDK 42
I + N+P F+ KDK
Sbjct: 278 IGKKENIPEFVRRAKDK 294
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.132 0.369
Gapped
Lambda K H
0.267 0.0741 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,690,752
Number of extensions: 82116
Number of successful extensions: 219
Number of sequences better than 10.0: 1
Number of HSP's gapped: 218
Number of HSP's successfully gapped: 35
Length of query: 116
Length of database: 6,701,793
Length adjustment: 79
Effective length of query: 37
Effective length of database: 4,496,034
Effective search space: 166353258
Effective search space used: 166353258
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.4 bits)