RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3233
         (116 letters)



>d1tbna_ g.49.1.1 (A:) Protein kinase c-gamma {Rat (Rattus rattus)
          [TaxId: 10117]}
          Length = 66

 Score = 26.5 bits (58), Expect = 0.28
 Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 8/48 (16%)

Query: 33 PSFLEHVKDKILRTGK--------YLNVIRKCKASVQSKCLLDKQRQR 72
          P+F +H    +              +NV R+C  SV S C +D   +R
Sbjct: 19 PTFCDHCGSLLYGLVHQGMKCSCCEMNVHRRCVRSVPSLCGVDHTERR 66


>d1kzyc1 c.15.1.4 (C:1714-1866) 53BP1 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 153

 Score = 26.5 bits (58), Expect = 0.72
 Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 2/43 (4%)

Query: 39  VKDKILRTGKYLNVIRKCKASVQSKCLLD--KQRQRAAEMKYM 79
           + D+  RT KY   +      V    + D     Q      Y+
Sbjct: 92  IADQHCRTRKYFLCLASGIPCVSHVWVHDSCHANQLQNYRNYL 134


>d1xa6a3 g.49.1.1 (A:209-270) Beta-chimaerin, middle domain {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 62

 Score = 23.0 bits (49), Expect = 4.8
 Identities = 5/33 (15%), Positives = 11/33 (33%)

Query: 33 PSFLEHVKDKILRTGKYLNVIRKCKASVQSKCL 65
          P + E+  + +            C  +V  +C 
Sbjct: 15 PHWCEYCANFMWGLIAQGVRCSDCGLNVHKQCS 47


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.132    0.369 

Gapped
Lambda     K      H
   0.267   0.0568    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 414,843
Number of extensions: 16530
Number of successful extensions: 45
Number of sequences better than 10.0: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 8
Length of query: 116
Length of database: 2,407,596
Length adjustment: 73
Effective length of query: 43
Effective length of database: 1,405,306
Effective search space: 60428158
Effective search space used: 60428158
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.2 bits)