Query psy3235
Match_columns 149
No_of_seqs 179 out of 1033
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 19:49:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3235.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3235hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xq2_A Sodium/glucose cotransp 45.8 1.5E+02 0.0053 25.9 10.5 71 40-118 519-591 (593)
2 2knc_A Integrin alpha-IIB; tra 41.8 44 0.0015 21.2 4.3 27 75-101 10-36 (54)
3 2l8s_A Integrin alpha-1; trans 37.8 42 0.0014 21.4 3.8 26 76-101 8-33 (54)
4 2k1a_A Integrin alpha-IIB; sin 36.8 50 0.0017 19.8 3.8 27 75-101 8-34 (42)
5 1rh5_B Preprotein translocase 16.4 2.1E+02 0.0072 18.9 4.3 26 79-104 39-64 (74)
6 2ww9_B Protein transport prote 15.2 1.9E+02 0.0064 19.6 3.8 24 80-103 53-76 (80)
7 2k9j_B Integrin beta-3; transm 9.9 3.1E+02 0.011 16.1 4.2 24 83-106 15-38 (43)
8 2gpv_G Nuclear receptor corepr 9.6 34 0.0012 18.7 -1.1 10 32-41 10-19 (26)
9 4b2v_A S64; toxin, ICK; NMR {S 8.9 78 0.0027 17.8 0.1 15 29-43 9-23 (32)
10 3zux_A Transporter, ASBTNM; tr 8.7 7.6E+02 0.026 19.8 9.5 27 7-33 165-191 (332)
No 1
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=45.79 E-value=1.5e+02 Score=25.85 Aligned_cols=71 Identities=11% Similarity=0.082 Sum_probs=23.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCCCccccCchhh
Q psy3235 40 VNSTGTKVVTLCLSAVIITINSTFFYDLLSRNHEELSWIIIGFLLVYGIFY--VIMVLYLLLHLIVSMGGDFKFNRSEFV 117 (149)
Q Consensus 40 ~ns~~~~ilawli~~vvi~lNi~llv~~l~~~~l~~~~~~~~~v~~~~~~Y--l~fl~YL~~~p~~~~~~~~l~~~~~~~ 117 (149)
+..+..+..+..+.++++.++..+ ... ++ .+...++.++.+... +.++-|...|-.++...+-- .+++++
T Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~f--~~~--~~---~~i~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 590 (593)
T 2xq2_A 519 VTDRSFNIAAYGIMIVLAVLYTLF--WVN--AD---AEITLIIFGVMAGVIGTILLISYGIKKLIKASYKSGG-SPGHHH 590 (593)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHH--HHC--TT---THHHHHHHHHHHHHHHHHHHHHHHHC------------------
T ss_pred ccCccchhhHHHHHHHHHHHHHHH--Hhc--ch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC-CCCccc
Confidence 333333555555555555554443 221 12 222222333333333 67777876665554433322 334444
Q ss_pred h
Q psy3235 118 S 118 (149)
Q Consensus 118 ~ 118 (149)
|
T Consensus 591 ~ 591 (593)
T 2xq2_A 591 H 591 (593)
T ss_dssp -
T ss_pred C
Confidence 3
No 2
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=41.84 E-value=44 Score=21.18 Aligned_cols=27 Identities=4% Similarity=0.172 Sum_probs=20.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3235 75 LSWIIIGFLLVYGIFYVIMVLYLLLHL 101 (149)
Q Consensus 75 ~~~~~~~~v~~~~~~Yl~fl~YL~~~p 101 (149)
.+||++++.++.+.+-++++.|+.++|
T Consensus 10 vp~wiIi~svl~GLllL~li~~~LwK~ 36 (54)
T 2knc_A 10 IPIWWVLVGVLGGLLLLTILVLAMWKV 36 (54)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 466677777777778888888888766
No 3
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=37.82 E-value=42 Score=21.36 Aligned_cols=26 Identities=12% Similarity=0.332 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3235 76 SWIIIGFLLVYGIFYVIMVLYLLLHL 101 (149)
Q Consensus 76 ~~~~~~~v~~~~~~Yl~fl~YL~~~p 101 (149)
+||++++.++.+.+-++++.|+.++|
T Consensus 8 p~WiIi~svl~GLLLL~Lii~~LwK~ 33 (54)
T 2l8s_A 8 PLWVILLSAFAGLLLLMLLILALWKI 33 (54)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 55667777777778888888888766
No 4
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=36.79 E-value=50 Score=19.82 Aligned_cols=27 Identities=4% Similarity=0.172 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3235 75 LSWIIIGFLLVYGIFYVIMVLYLLLHL 101 (149)
Q Consensus 75 ~~~~~~~~v~~~~~~Yl~fl~YL~~~p 101 (149)
.++|++++.++.+..-++++.|..+++
T Consensus 8 vp~wiIi~s~l~GLllL~li~~~LwK~ 34 (42)
T 2k1a_A 8 IPIWWVLVGVLGGLLLLTILVLAMWKV 34 (42)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456666666666777777777777654
No 5
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=16.39 E-value=2.1e+02 Score=18.93 Aligned_cols=26 Identities=8% Similarity=-0.078 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3235 79 IIGFLLVYGIFYVIMVLYLLLHLIVS 104 (149)
Q Consensus 79 ~~~~v~~~~~~Yl~fl~YL~~~p~~~ 104 (149)
-..+++.+....++|+++++..|+..
T Consensus 39 k~~~iG~~imG~IGfiIkli~ipIn~ 64 (74)
T 1rh5_B 39 KVTALGISLLGIIGYIIHVPATYIKG 64 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34556666778888889998888764
No 6
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=15.16 E-value=1.9e+02 Score=19.59 Aligned_cols=24 Identities=8% Similarity=-0.166 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy3235 80 IGFLLVYGIFYVIMVLYLLLHLIV 103 (149)
Q Consensus 80 ~~~v~~~~~~Yl~fl~YL~~~p~~ 103 (149)
..+++.+....++|+++|+..|+.
T Consensus 53 ~t~iG~~imG~IGfiIkLI~iPIn 76 (80)
T 2ww9_B 53 AVGIGFIAVGIIGYAIKLIHIPIR 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Confidence 455666667788888888888875
No 7
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=9.93 E-value=3.1e+02 Score=16.09 Aligned_cols=24 Identities=13% Similarity=0.325 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcC
Q psy3235 83 LLVYGIFYVIMVLYLLLHLIVSMG 106 (149)
Q Consensus 83 v~~~~~~Yl~fl~YL~~~p~~~~~ 106 (149)
-++.+++-+++++.++|+-+....
T Consensus 15 gvi~~ivliGl~lLliwk~~~~i~ 38 (43)
T 2k9j_B 15 SVMGAILLIGLAALLIWKLLITIH 38 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhee
Confidence 344456778888888888877654
No 8
>2gpv_G Nuclear receptor corepressor 2; estrogen related receptor, ERR, ERRG, ESRRG, nuclear recepto steroid receptor, SMRT, tamoxifen, transcription; HET: OHT; 2.85A {Homo sapiens}
Probab=9.65 E-value=34 Score=18.65 Aligned_cols=10 Identities=20% Similarity=0.551 Sum_probs=7.4
Q ss_pred CCCccccccc
Q psy3235 32 NPNIMGDFVN 41 (149)
Q Consensus 32 ~k~iMG~f~n 41 (149)
+|.+||+|-.
T Consensus 10 rkalmg~yd~ 19 (26)
T 2gpv_G 10 RKALMGKYDQ 19 (26)
T ss_pred HHHHccchhh
Confidence 5778998854
No 9
>4b2v_A S64; toxin, ICK; NMR {Sicarius dolichocephalus}
Probab=8.85 E-value=78 Score=17.78 Aligned_cols=15 Identities=33% Similarity=0.736 Sum_probs=11.3
Q ss_pred HhcCCCccccccchh
Q psy3235 29 FTSNPNIMGDFVNST 43 (149)
Q Consensus 29 fts~k~iMG~f~ns~ 43 (149)
|+.+++.||++--++
T Consensus 9 fcpdpekmgdwccgr 23 (32)
T 4b2v_A 9 FCPDPEKMGDWCCGR 23 (32)
T ss_dssp BCCCTTTTCCCCSSE
T ss_pred cCCChHHhcchhhhH
Confidence 678899999875443
No 10
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=8.72 E-value=7.6e+02 Score=19.80 Aligned_cols=27 Identities=11% Similarity=0.105 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHhcCC
Q psy3235 7 MNDILNTVMSLQLPFAVLPTIAFTSNP 33 (149)
Q Consensus 7 L~~~~QVllSlqLPfaLIPLL~fts~k 33 (149)
.....+++..+.+|+++.-+++-...+
T Consensus 165 ~~~~~~l~~~vllP~~lG~l~r~~~~~ 191 (332)
T 3zux_A 165 AGMLMSIVKMVLLPIVLGLIVHKVLGS 191 (332)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344677788889999999988654433
Done!