Query psy3235
Match_columns 149
No_of_seqs 179 out of 1033
Neff 4.9
Searched_HMMs 13730
Date Fri Aug 16 19:49:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3235.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/3235hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rh5b_ f.23.28.1 (B:) Preprot 20.0 85 0.0062 18.5 4.6 26 79-104 28-53 (56)
2 d2fsua1 c.67.2.1 (A:12-194) Ph 6.0 35 0.0026 24.4 -1.1 15 126-140 37-51 (183)
3 d1l6ha_ a.52.1.1 (A:) Non-spec 3.6 1.5E+02 0.011 18.0 0.7 24 111-135 39-62 (69)
4 d1jb0i_ f.23.17.1 (I:) Subunit 3.5 77 0.0056 17.3 -0.7 10 18-27 9-18 (38)
5 d1qxfa_ g.41.8.4 (A:) Ribosoma 3.0 1E+02 0.0076 18.1 -0.5 12 132-143 11-22 (58)
6 d1y1la_ c.44.1.1 (A:) Arsenate 2.8 2.2E+02 0.016 17.6 1.0 13 126-138 69-81 (124)
7 d1i6pa_ c.53.2.1 (A:) beta-car 2.7 3.5E+02 0.025 18.7 2.2 22 116-137 24-45 (214)
8 d1tuka1 a.52.1.1 (A:1-67) Non- 2.6 1.6E+02 0.011 17.7 0.0 15 111-125 38-52 (67)
9 d1lr7a1 g.3.11.3 (A:64-88) Dom 2.6 2.4E+02 0.018 13.8 0.8 11 133-143 2-12 (26)
10 d1n12a_ b.2.3.2 (A:) PapE pilu 2.6 2.3E+02 0.017 17.4 0.9 22 126-148 30-51 (138)
No 1
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=19.96 E-value=85 Score=18.49 Aligned_cols=26 Identities=8% Similarity=-0.078 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3235 79 IIGFLLVYGIFYVIMVLYLLLHLIVS 104 (149)
Q Consensus 79 ~~~~v~~~~~~Yl~fl~YL~~~p~~~ 104 (149)
...+++.+....++|++|++..|+..
T Consensus 28 ~v~~iG~~i~G~IGf~I~li~~~i~~ 53 (56)
T d1rh5b_ 28 KVTALGISLLGIIGYIIHVPATYIKG 53 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34556666778888888888888753
No 2
>d2fsua1 c.67.2.1 (A:12-194) Phosphonate metabolism protein PhnH {Escherichia coli [TaxId: 562]}
Probab=6.00 E-value=35 Score=24.41 Aligned_cols=15 Identities=27% Similarity=0.441 Sum_probs=12.2
Q ss_pred ccceeeeccCCCCCC
Q psy3235 126 RDNIVLTSCDNVSSL 140 (149)
Q Consensus 126 ~~~~~~~~~~~~~~~ 140 (149)
.-++.+|+||+++.+
T Consensus 37 ~~avllTL~D~~t~v 51 (183)
T d2fsua1 37 TTSVLLTLADNDTPV 51 (183)
T ss_dssp HHHHHHHHCCTTSCE
T ss_pred HHHHHHHHcCCCCCe
Confidence 345689999999985
No 3
>d1l6ha_ a.52.1.1 (A:) Non-specific lipid-transfer protein homologue (ns-LTP2) {Rice (Oryza sativa) [TaxId: 4530]}
Probab=3.59 E-value=1.5e+02 Score=17.97 Aligned_cols=24 Identities=21% Similarity=0.495 Sum_probs=16.1
Q ss_pred ccCchhhhhhccCccccceeeeccC
Q psy3235 111 FNRSEFVSKYIGSQLRDNIVLTSCD 135 (149)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (149)
|.+.+..++|++|++..- +++.|.
T Consensus 39 Y~k~P~~~~yv~spnark-v~~aCg 62 (69)
T d1l6ha_ 39 FAKDPRYGRYVNSPNARK-AVSSCG 62 (69)
T ss_dssp HTTCSSHHHHTTTTTGGG-CCCCCS
T ss_pred eccCccHHHHcCCHHHHH-HHHhcC
Confidence 456777888999976543 455663
No 4
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=3.45 E-value=77 Score=17.27 Aligned_cols=10 Identities=30% Similarity=0.846 Sum_probs=6.3
Q ss_pred hhHHHHHHHH
Q psy3235 18 QLPFAVLPTI 27 (149)
Q Consensus 18 qLPfaLIPLL 27 (149)
-||-.++|++
T Consensus 9 yLPwI~iPvv 18 (38)
T d1jb0i_ 9 FLPWIFIPVV 18 (38)
T ss_dssp THHHHHHHHH
T ss_pred hcchhHHHHH
Confidence 3667777764
No 5
>d1qxfa_ g.41.8.4 (A:) Ribosomal protein S27e {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=3.02 E-value=1e+02 Score=18.14 Aligned_cols=12 Identities=8% Similarity=0.348 Sum_probs=9.6
Q ss_pred eccCCCCCCCcc
Q psy3235 132 TSCDNVSSLPST 143 (149)
Q Consensus 132 ~~~~~~~~~~~~ 143 (149)
..|+|++-+||-
T Consensus 11 ~~C~n~~ivFsh 22 (58)
T d1qxfa_ 11 PDCEHEQVIFDH 22 (58)
T ss_dssp TTTCCEEEEESS
T ss_pred CCCCCeEEEEec
Confidence 469999988874
No 6
>d1y1la_ c.44.1.1 (A:) Arsenate reductase ArsC {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=2.79 E-value=2.2e+02 Score=17.65 Aligned_cols=13 Identities=23% Similarity=0.588 Sum_probs=10.1
Q ss_pred ccceeeeccCCCC
Q psy3235 126 RDNIVLTSCDNVS 138 (149)
Q Consensus 126 ~~~~~~~~~~~~~ 138 (149)
++-.++|.||++.
T Consensus 69 ~~D~Vitm~~~~~ 81 (124)
T d1y1la_ 69 DFDLIVTVCEESS 81 (124)
T ss_dssp GCSCEEEEECSSC
T ss_pred hhhhhhhcccccc
Confidence 4457999999875
No 7
>d1i6pa_ c.53.2.1 (A:) beta-carbonic anhydrase {Escherichia coli [TaxId: 562]}
Probab=2.74 E-value=3.5e+02 Score=18.68 Aligned_cols=22 Identities=18% Similarity=0.181 Sum_probs=16.9
Q ss_pred hhhhhccCccccceeeeccCCC
Q psy3235 116 FVSKYIGSQLRDNIVLTSCDNV 137 (149)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~ 137 (149)
+.++....|..+..+|+-||.-
T Consensus 24 ~f~~la~gQ~P~~~vi~CsDSR 45 (214)
T d1i6pa_ 24 FFEKLAQAQKPRFLWIGCSDSR 45 (214)
T ss_dssp TTHHHHSCCCCSEEEEEETTCS
T ss_pred HHHHHhcCCCCceEEEEEcCCC
Confidence 3455556799999999999964
No 8
>d1tuka1 a.52.1.1 (A:1-67) Non-specific lipid-transfer protein homologue (ns-LTP2) {Triticum turgidum [TaxId: 4571]}
Probab=2.63 E-value=1.6e+02 Score=17.75 Aligned_cols=15 Identities=20% Similarity=0.379 Sum_probs=11.1
Q ss_pred ccCchhhhhhccCcc
Q psy3235 111 FNRSEFVSKYIGSQL 125 (149)
Q Consensus 111 ~~~~~~~~~~~~~~~ 125 (149)
|.+.+..++|++|++
T Consensus 38 Y~kdP~~~~yv~spn 52 (67)
T d1tuka1 38 YAKDPTYGQYIRSPH 52 (67)
T ss_dssp HTTCTTTHHHHTSHH
T ss_pred ecCCccHHHHcCCHH
Confidence 456777888998865
No 9
>d1lr7a1 g.3.11.3 (A:64-88) Domain of follistatin {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=2.63 E-value=2.4e+02 Score=13.80 Aligned_cols=11 Identities=36% Similarity=0.824 Sum_probs=7.7
Q ss_pred ccCCCCCCCcc
Q psy3235 133 SCDNVSSLPST 143 (149)
Q Consensus 133 ~~~~~~~~~~~ 143 (149)
.|||+.-=|..
T Consensus 2 tcdnvdcgpgk 12 (26)
T d1lr7a1 2 TCENVDCGPGK 12 (26)
T ss_dssp CSTTCCCCTTE
T ss_pred cccccccCCCc
Confidence 59998766544
No 10
>d1n12a_ b.2.3.2 (A:) PapE pilus subunit {Escherichia coli [TaxId: 562]}
Probab=2.62 E-value=2.3e+02 Score=17.39 Aligned_cols=22 Identities=5% Similarity=0.147 Sum_probs=0.0
Q ss_pred ccceeeeccCCCCCCCccccCCC
Q psy3235 126 RDNIVLTSCDNVSSLPSTRLSGN 148 (149)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~ 148 (149)
.+.|.++-||+..++ ..+++++
T Consensus 30 ~f~i~l~c~~~~~~~-~v~~~~t 51 (138)
T d1n12a_ 30 EFTVNMRCPYNLGTM-KVTITAT 51 (138)
T ss_dssp EEEEEEECSCCCSCE-EEEEECS
T ss_pred EeEEEEeccCCccce-eEEEeee
Done!