RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy3235
         (149 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 31.6 bits (71), Expect = 0.091
 Identities = 13/85 (15%), Positives = 27/85 (31%), Gaps = 22/85 (25%)

Query: 9   DILNTVMSLQLPFAVLPTIAFTS-------------NPNIMGDFVNSTGTKVVTLCLSAV 55
           D L ++     P +  P I                  P  +  ++         L ++AV
Sbjct: 229 DYLLSI-----PIS-CPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGL-VTAV 281

Query: 56  IITINSTF--FYDLLSRNHEELSWI 78
            I    ++  F+  + +    L +I
Sbjct: 282 AIAETDSWESFFVSVRKAITVLFFI 306


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.326    0.140    0.404 

Gapped
Lambda     K      H
   0.267   0.0616    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,163,123
Number of extensions: 118080
Number of successful extensions: 307
Number of sequences better than 10.0: 1
Number of HSP's gapped: 306
Number of HSP's successfully gapped: 5
Length of query: 149
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 64
Effective length of database: 4,328,508
Effective search space: 277024512
Effective search space used: 277024512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.4 bits)