Query psy324
Match_columns 101
No_of_seqs 113 out of 1107
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 19:54:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy324.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/324hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00014 myosin-A; Provisional 100.0 7.5E-37 1.6E-41 250.6 7.4 97 3-100 454-550 (821)
2 COG5022 Myosin heavy chain [Cy 100.0 7.5E-37 1.6E-41 256.2 5.9 97 3-100 420-517 (1463)
3 cd01384 MYSc_type_XI Myosin mo 100.0 4.6E-36 1E-40 242.3 7.8 96 4-100 360-455 (674)
4 cd01381 MYSc_type_VII Myosin m 100.0 5.7E-36 1.2E-40 241.7 8.2 93 7-100 358-450 (671)
5 cd01383 MYSc_type_VIII Myosin 100.0 5.8E-36 1.3E-40 241.8 7.6 92 8-100 362-453 (677)
6 cd01387 MYSc_type_XV Myosin mo 100.0 8E-36 1.7E-40 241.0 7.9 92 8-100 358-449 (677)
7 cd01382 MYSc_type_VI Myosin mo 100.0 7.8E-36 1.7E-40 242.3 7.5 92 8-100 394-485 (717)
8 cd01385 MYSc_type_IX Myosin mo 100.0 1.2E-35 2.6E-40 240.5 7.6 91 9-100 374-465 (692)
9 cd01377 MYSc_type_II Myosin mo 100.0 1.4E-35 3.1E-40 240.1 8.0 97 3-100 366-463 (693)
10 cd01378 MYSc_type_I Myosin mot 100.0 1.3E-35 2.7E-40 239.8 7.3 91 7-98 362-453 (674)
11 cd01379 MYSc_type_III Myosin m 100.0 1.3E-35 2.9E-40 239.0 7.3 91 9-100 371-461 (653)
12 cd01380 MYSc_type_V Myosin mot 100.0 4.8E-35 1.1E-39 237.0 7.5 92 7-100 364-455 (691)
13 smart00242 MYSc Myosin. Large 100.0 8.6E-35 1.9E-39 235.1 7.6 97 3-100 361-457 (677)
14 cd00124 MYSc Myosin motor doma 100.0 4.8E-34 1.1E-38 230.8 7.1 96 4-100 355-450 (679)
15 cd01386 MYSc_type_XVIII Myosin 100.0 4.5E-33 9.8E-38 227.3 7.5 97 4-100 366-482 (767)
16 PF00063 Myosin_head: Myosin h 100.0 3.4E-33 7.3E-38 225.7 6.1 92 8-100 361-453 (689)
17 KOG0164|consensus 100.0 5.3E-32 1.2E-36 216.7 5.6 91 9-100 373-463 (1001)
18 KOG0161|consensus 100.0 4.1E-32 8.9E-37 234.1 5.1 92 7-100 444-536 (1930)
19 KOG0163|consensus 100.0 1.4E-30 3E-35 209.7 6.3 91 8-99 448-538 (1259)
20 KOG0162|consensus 99.9 7.9E-29 1.7E-33 199.0 4.4 91 6-97 378-469 (1106)
21 KOG0160|consensus 99.9 6E-28 1.3E-32 197.5 6.1 93 6-100 363-455 (862)
22 KOG4229|consensus 99.9 5E-25 1.1E-29 183.7 4.7 91 9-100 425-515 (1062)
23 COG5019 CDC3 Septin family pro 52.5 26 0.00057 27.5 4.1 40 7-47 78-118 (373)
24 KOG2655|consensus 51.5 23 0.00049 27.7 3.6 39 8-47 76-115 (366)
25 cd01850 CDC_Septin CDC/Septin. 48.3 27 0.00058 25.7 3.5 35 11-46 63-98 (276)
26 KOG1547|consensus 39.3 59 0.0013 24.7 4.0 55 9-65 102-158 (336)
27 PF00735 Septin: Septin; Inte 36.1 56 0.0012 24.2 3.6 38 9-47 61-99 (281)
28 COG2153 ElaA Predicted acyltra 32.4 21 0.00045 24.7 0.7 29 36-64 116-144 (155)
29 cd01852 AIG1 AIG1 (avrRpt2-ind 25.4 49 0.0011 22.5 1.6 16 10-25 48-63 (196)
30 PF03193 DUF258: Protein of un 25.1 18 0.0004 24.9 -0.6 13 13-25 89-101 (161)
31 PF04548 AIG1: AIG1 family; I 24.8 51 0.0011 23.0 1.6 14 10-23 48-61 (212)
32 cd06482 ACD_HspB10 Alpha cryst 24.4 86 0.0019 19.2 2.4 20 4-23 2-21 (87)
33 KOG3043|consensus 20.6 84 0.0018 23.3 2.1 15 10-24 40-54 (242)
34 PF00009 GTP_EFTU: Elongation 20.6 50 0.0011 22.3 0.9 17 8-24 67-83 (188)
No 1
>PTZ00014 myosin-A; Provisional
Probab=100.00 E-value=7.5e-37 Score=250.60 Aligned_cols=97 Identities=30% Similarity=0.504 Sum_probs=92.2
Q ss_pred CCCCCCCceeEEeeeccCcccCCCCcchhhhhhhhhhhHhhhHHhhhhhhhHHHHhhhcCceeeeeeecCchhHHHhhhc
Q psy324 3 LQKKGSYRTLETQLGLKCYELMSNRDGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG 82 (101)
Q Consensus 3 ~~~~~~~~~~IgiLDi~GFE~~~~~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~ldli~~ 82 (101)
|.+......+||||||||||+|+ .|||||||||||||+||++|++++|+.++++|.+|||.|..++|.||++|+|||++
T Consensus 454 l~~~~~~~~~IGiLDI~GFE~f~-~NSfEQLcINy~NEkLQq~F~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~idLie~ 532 (821)
T PTZ00014 454 IEPPGGFKVFIGMLDIFGFEVFK-NNSLEQLFINITNEMLQKNFVDIVFERESKLYKDEGISTEELEYTSNESVIDLLCG 532 (821)
T ss_pred hcCCcccCceEEEEecccccccC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCcHHHHHHHhc
Confidence 44555677899999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccchhhhhcCCC
Q psy324 83 KPNGLLCVLDDQAKSCDR 100 (101)
Q Consensus 83 ~p~Gll~iLDee~~~~~~ 100 (101)
||.|||++|||||++|+.
T Consensus 533 k~~GIl~lLDEec~~p~~ 550 (821)
T PTZ00014 533 KGKSVLSILEDQCLAPGG 550 (821)
T ss_pred CCccHHHHHHHHhCCCCC
Confidence 999999999999999975
No 2
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=100.00 E-value=7.5e-37 Score=256.17 Aligned_cols=97 Identities=42% Similarity=0.807 Sum_probs=90.0
Q ss_pred CCCCCCCceeEEeeeccCcccCCCCcchhhhhhhhhhhHhhhHHhhhhhhhHHHHhhhcCceeeeeeecCchhHHHhhhc
Q psy324 3 LQKKGSYRTLETQLGLKCYELMSNRDGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG 82 (101)
Q Consensus 3 ~~~~~~~~~~IgiLDi~GFE~~~~~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~ldli~~ 82 (101)
|..++...+|||||||||||+|+ .||||||||||+||+||++|++|+|+.+|++|.+|||.|.+++|.||++|+|||++
T Consensus 420 L~~~~~~~~fIGVLDIyGFEiFE-kNSFEQlCINYtNEKLQQ~Fn~h~FklEQEeY~kE~IeW~~Idy~DnQ~~IDLIE~ 498 (1463)
T COG5022 420 LDHSAAASNFIGVLDIYGFEIFE-KNSFEQLCINYTNEKLQQFFNQHMFKLEQEEYVKEGIEWSFIDYFDNQPCIDLIEK 498 (1463)
T ss_pred ccCccccccceeEEeecchhhhc-cCcHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCcchhHHHhc
Confidence 33444468999999999999999 99999999999999999999999999999999999999999999999999999996
Q ss_pred -CCCcccccchhhhhcCCC
Q psy324 83 -KPNGLLCVLDDQAKSCDR 100 (101)
Q Consensus 83 -~p~Gll~iLDee~~~~~~ 100 (101)
.|.|||++|||||..|-.
T Consensus 499 ~~p~GIlslLDEE~~~p~a 517 (1463)
T COG5022 499 KNPLGILSLLDEECVMPHA 517 (1463)
T ss_pred cCCCchHhhhcHHhcCCCC
Confidence 378999999999999853
No 3
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=100.00 E-value=4.6e-36 Score=242.29 Aligned_cols=96 Identities=43% Similarity=0.687 Sum_probs=91.4
Q ss_pred CCCCCCceeEEeeeccCcccCCCCcchhhhhhhhhhhHhhhHHhhhhhhhHHHHhhhcCceeeeeeecCchhHHHhhhcC
Q psy324 4 QKKGSYRTLETQLGLKCYELMSNRDGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGK 83 (101)
Q Consensus 4 ~~~~~~~~~IgiLDi~GFE~~~~~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~ldli~~~ 83 (101)
.+......+||||||||||+|+ .|+|||||||||||+||++|++++|..++++|.+|||.|..++|.||++|+|||+++
T Consensus 360 ~~~~~~~~~IgiLDI~GFE~f~-~NsfEQLcINyaNEkLQ~~f~~~if~~eq~eY~~EgI~~~~i~~~DN~~~ldLie~~ 438 (674)
T cd01384 360 GQDPDSKSLIGVLDIYGFESFK-TNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKK 438 (674)
T ss_pred cCCCCCCeEEEEEecccccccC-cCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccCCChHHHHHHHhcC
Confidence 4445567899999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccchhhhhcCCC
Q psy324 84 PNGLLCVLDDQAKSCDR 100 (101)
Q Consensus 84 p~Gll~iLDee~~~~~~ 100 (101)
|.|||++|||||++|++
T Consensus 439 ~~Gil~lLdee~~~p~~ 455 (674)
T cd01384 439 PGGIIALLDEACMFPKS 455 (674)
T ss_pred CccHHHHHHHHHcCCCC
Confidence 99999999999999975
No 4
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=100.00 E-value=5.7e-36 Score=241.71 Aligned_cols=93 Identities=43% Similarity=0.702 Sum_probs=90.0
Q ss_pred CCCceeEEeeeccCcccCCCCcchhhhhhhhhhhHhhhHHhhhhhhhHHHHhhhcCceeeeeeecCchhHHHhhhcCCCc
Q psy324 7 GSYRTLETQLGLKCYELMSNRDGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNG 86 (101)
Q Consensus 7 ~~~~~~IgiLDi~GFE~~~~~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~ldli~~~p~G 86 (101)
.....+||||||||||+|+ .|+|||||||||||+||++|++++|+.++++|.+|||.|.+++|.||++|+|||++||.|
T Consensus 358 ~~~~~~IgiLDIfGFE~f~-~NsfEQLcINy~NEkLQ~~f~~~vf~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~kp~G 436 (671)
T cd01381 358 QQSRNSIGVLDIFGFENFD-VNSFEQLCINFANENLQQFFVQHIFKLEQEEYNLEHINWQHIEFVDNQDALDLIAIKPLN 436 (671)
T ss_pred ccccceEEEEecCCcccCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccCccCcHHHHHHHhcCCCC
Confidence 4567899999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhhhcCCC
Q psy324 87 LLCVLDDQAKSCDR 100 (101)
Q Consensus 87 ll~iLDee~~~~~~ 100 (101)
||++|||||++|++
T Consensus 437 il~lLDee~~~p~~ 450 (671)
T cd01381 437 IMSLIDEESKFPKG 450 (671)
T ss_pred cceechHhhcCCCC
Confidence 99999999999975
No 5
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=100.00 E-value=5.8e-36 Score=241.81 Aligned_cols=92 Identities=45% Similarity=0.798 Sum_probs=89.0
Q ss_pred CCceeEEeeeccCcccCCCCcchhhhhhhhhhhHhhhHHhhhhhhhHHHHhhhcCceeeeeeecCchhHHHhhhcCCCcc
Q psy324 8 SYRTLETQLGLKCYELMSNRDGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGL 87 (101)
Q Consensus 8 ~~~~~IgiLDi~GFE~~~~~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~ldli~~~p~Gl 87 (101)
....+||||||||||+|+ .|||||||||||||+||++|++++|..++++|.+|||.|..++|.||++|+|||+++|.||
T Consensus 362 ~~~~~IgiLDI~GFE~f~-~NsfEQLcINyaNEkLQ~~f~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~ldLie~kp~Gi 440 (677)
T cd01383 362 RTGRSISILDIYGFESFD-KNSFEQFCINYANERLQQHFNRHLFKLEQEEYEEDGIDWTKVEFEDNQECLDLFEKKPLGL 440 (677)
T ss_pred cccceEEEeeccccccCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccH
Confidence 346799999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhhcCCC
Q psy324 88 LCVLDDQAKSCDR 100 (101)
Q Consensus 88 l~iLDee~~~~~~ 100 (101)
|++|||||++|++
T Consensus 441 l~lLdee~~~p~~ 453 (677)
T cd01383 441 LSLLDEESTFPNA 453 (677)
T ss_pred HHHhHHHHcCCCC
Confidence 9999999999975
No 6
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=100.00 E-value=8e-36 Score=241.04 Aligned_cols=92 Identities=46% Similarity=0.686 Sum_probs=88.9
Q ss_pred CCceeEEeeeccCcccCCCCcchhhhhhhhhhhHhhhHHhhhhhhhHHHHhhhcCceeeeeeecCchhHHHhhhcCCCcc
Q psy324 8 SYRTLETQLGLKCYELMSNRDGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGL 87 (101)
Q Consensus 8 ~~~~~IgiLDi~GFE~~~~~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~ldli~~~p~Gl 87 (101)
....+||||||||||+|. .|+|||||||||||+||++|++++|..++++|.+|||.|..++|.||++|+|||++||.||
T Consensus 358 ~~~~~IgILDIfGFE~f~-~NsfEQLcINyaNEkLQ~~f~~~vF~~eq~eY~~EgI~~~~i~f~dN~~~ldLi~~kp~Gi 436 (677)
T cd01387 358 QDTLSIAILDIYGFEDLS-FNSFEQLCINYANENLQYLFNKIVFQEEQEEYIREQLDWTEIAFADNQPVINLISLKPYGI 436 (677)
T ss_pred CCCceEEEEecCccccCC-CCCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCcCChHHHHHHHhcCCCch
Confidence 346799999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhhcCCC
Q psy324 88 LCVLDDQAKSCDR 100 (101)
Q Consensus 88 l~iLDee~~~~~~ 100 (101)
|++|||||++|++
T Consensus 437 l~lLdee~~~p~~ 449 (677)
T cd01387 437 LRILDDQCCFPQA 449 (677)
T ss_pred HHHHHHHhcCCCC
Confidence 9999999999975
No 7
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=100.00 E-value=7.8e-36 Score=242.29 Aligned_cols=92 Identities=35% Similarity=0.681 Sum_probs=89.1
Q ss_pred CCceeEEeeeccCcccCCCCcchhhhhhhhhhhHhhhHHhhhhhhhHHHHhhhcCceeeeeeecCchhHHHhhhcCCCcc
Q psy324 8 SYRTLETQLGLKCYELMSNRDGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGL 87 (101)
Q Consensus 8 ~~~~~IgiLDi~GFE~~~~~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~ldli~~~p~Gl 87 (101)
....+||||||||||+|+ .|+|||||||||||+||++|++++|..++++|.+|||+|.+++|.||++|+|||++||.||
T Consensus 394 ~~~~~IgiLDIfGFE~f~-~NsfEQLcINyaNEkLQ~~f~~~if~~Eq~~Y~~EgI~~~~i~~~DN~~~ldLie~k~~Gi 472 (717)
T cd01382 394 TSSNFIGVLDIAGFEYFE-HNSFEQFCINYCNEKLQQFFNERILKEEQELYQREGLGVNEVHYVDNQDCIDLIEAKLNGI 472 (717)
T ss_pred CCCcEEEEEeccccccCC-CCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccHHHHHHHhcCCccH
Confidence 357899999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhhcCCC
Q psy324 88 LCVLDDQAKSCDR 100 (101)
Q Consensus 88 l~iLDee~~~~~~ 100 (101)
|++|||||++|++
T Consensus 473 l~lLDee~~~p~~ 485 (717)
T cd01382 473 LDILDEENRLPQP 485 (717)
T ss_pred HHHhHHHhcCCCC
Confidence 9999999999975
No 8
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=100.00 E-value=1.2e-35 Score=240.48 Aligned_cols=91 Identities=51% Similarity=0.870 Sum_probs=88.5
Q ss_pred CceeEEeeeccCcccCCCC-cchhhhhhhhhhhHhhhHHhhhhhhhHHHHhhhcCceeeeeeecCchhHHHhhhcCCCcc
Q psy324 9 YRTLETQLGLKCYELMSNR-DGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGL 87 (101)
Q Consensus 9 ~~~~IgiLDi~GFE~~~~~-n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~ldli~~~p~Gl 87 (101)
...+||||||||||+|+ . |+|||||||||||+||++|++++|..++++|..|||.|..++|.||++|+|||++||.||
T Consensus 374 ~~~~IgiLDI~GFE~f~-~~NsfEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~f~dN~~~ldLie~k~~Gi 452 (692)
T cd01385 374 SGLSIGVLDIFGFEDFG-RCNSFEQLCINYANEQLQYYFNQHIFKLEQEEYQGEGITWTNIEYTDNVGCIQLFSKKPTGL 452 (692)
T ss_pred cceEEEEEecCccccCC-CCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccH
Confidence 46899999999999999 7 999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhhcCCC
Q psy324 88 LCVLDDQAKSCDR 100 (101)
Q Consensus 88 l~iLDee~~~~~~ 100 (101)
|++|||||++|++
T Consensus 453 l~lLdee~~~p~~ 465 (692)
T cd01385 453 LYLLDEESNFPHA 465 (692)
T ss_pred HHHhHHHhcCCCC
Confidence 9999999999976
No 9
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=100.00 E-value=1.4e-35 Score=240.10 Aligned_cols=97 Identities=40% Similarity=0.721 Sum_probs=91.8
Q ss_pred CCCCCCCceeEEeeeccCcccCCCCcchhhhhhhhhhhHhhhHHhhhhhhhHHHHhhhcCceeeeeee-cCchhHHHhhh
Q psy324 3 LQKKGSYRTLETQLGLKCYELMSNRDGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVE 81 (101)
Q Consensus 3 ~~~~~~~~~~IgiLDi~GFE~~~~~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~dn~~~ldli~ 81 (101)
|.++.....+||||||||||+|+ .|+|||||||||||+||++|++++|+.++++|.+|||.|..++| .||++|++||+
T Consensus 366 l~~~~~~~~~IgiLDIfGFE~f~-~NsfEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~~~~dn~~~ldLie 444 (693)
T cd01377 366 LDTKQQRAYFIGVLDIAGFEIFD-FNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWTFIDFGLDLQPTIDLIE 444 (693)
T ss_pred hCCCCCCCceEEEEecccccccC-CCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCCcHHHHHHHh
Confidence 45556678999999999999999 99999999999999999999999999999999999999999999 59999999999
Q ss_pred cCCCcccccchhhhhcCCC
Q psy324 82 GKPNGLLCVLDDQAKSCDR 100 (101)
Q Consensus 82 ~~p~Gll~iLDee~~~~~~ 100 (101)
+||.|||++|||||++|++
T Consensus 445 ~~~~Gil~lLdee~~~~~~ 463 (693)
T cd01377 445 KNPMGILSLLDEECVFPKA 463 (693)
T ss_pred cCCCchHhhhhHHhcCCCC
Confidence 9999999999999999865
No 10
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=100.00 E-value=1.3e-35 Score=239.83 Aligned_cols=91 Identities=37% Similarity=0.720 Sum_probs=88.6
Q ss_pred CCCceeEEeeeccCcccCCCCcchhhhhhhhhhhHhhhHHhhhhhhhHHHHhhhcCceeeeeeecCchhHHHhhhc-CCC
Q psy324 7 GSYRTLETQLGLKCYELMSNRDGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG-KPN 85 (101)
Q Consensus 7 ~~~~~~IgiLDi~GFE~~~~~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~ldli~~-~p~ 85 (101)
.....+||||||||||+|+ .|+|||||||||||+||++|++++|..++++|.+|||.|..++|.||++|+|||++ +|.
T Consensus 362 ~~~~~~IgILDIfGFE~f~-~NsfEQLcINyaNEkLQ~~f~~~~F~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~~~~ 440 (674)
T cd01378 362 PGKNKVIGVLDIYGFEIFQ-KNSFEQFCINYVNEKLQQIFIELTLKAEQEEYVREGIKWTPIEYFNNKIVCDLIEGKRPP 440 (674)
T ss_pred ccCcceEEEEecccccccc-cccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCcCChHHHHHHHhcCCCc
Confidence 4568899999999999999 99999999999999999999999999999999999999999999999999999999 899
Q ss_pred cccccchhhhhcC
Q psy324 86 GLLCVLDDQAKSC 98 (101)
Q Consensus 86 Gll~iLDee~~~~ 98 (101)
|||++|||||++|
T Consensus 441 Gil~lLdee~~~p 453 (674)
T cd01378 441 GIFSILDDVCATP 453 (674)
T ss_pred chHHHHHHHHcCC
Confidence 9999999999999
No 11
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=100.00 E-value=1.3e-35 Score=238.98 Aligned_cols=91 Identities=42% Similarity=0.700 Sum_probs=88.5
Q ss_pred CceeEEeeeccCcccCCCCcchhhhhhhhhhhHhhhHHhhhhhhhHHHHhhhcCceeeeeeecCchhHHHhhhcCCCccc
Q psy324 9 YRTLETQLGLKCYELMSNRDGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 88 (101)
Q Consensus 9 ~~~~IgiLDi~GFE~~~~~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~ldli~~~p~Gll 88 (101)
...+||||||||||+|. .|+|||||||||||+||++|++++|..++++|.+|||+|..++|.||++|+|||++||.|||
T Consensus 371 ~~~~IgiLDI~GFE~f~-~NsfEQLcINyaNEkLQ~~f~~~vf~~Eq~eY~~EgI~~~~i~~~dN~~~ldli~~kp~Gil 449 (653)
T cd01379 371 DQLNVGILDIFGFENFK-KNSFEQLCINIANEQIQYYFNQHIFAWEQQEYLNEGVDARLVEYEDNRPLLDMFLQKPLGLL 449 (653)
T ss_pred ccceEEEEeccccccCC-CCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHhHccCCCcHH
Confidence 56799999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhcCCC
Q psy324 89 CVLDDQAKSCDR 100 (101)
Q Consensus 89 ~iLDee~~~~~~ 100 (101)
++|||||++|++
T Consensus 450 ~lLdee~~~~~~ 461 (653)
T cd01379 450 ALLDEESRFPQA 461 (653)
T ss_pred HHHHHHhcCCCC
Confidence 999999999975
No 12
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=100.00 E-value=4.8e-35 Score=236.95 Aligned_cols=92 Identities=45% Similarity=0.785 Sum_probs=88.1
Q ss_pred CCCceeEEeeeccCcccCCCCcchhhhhhhhhhhHhhhHHhhhhhhhHHHHhhhcCceeeeeeecCchhHHHhhhcCCCc
Q psy324 7 GSYRTLETQLGLKCYELMSNRDGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNG 86 (101)
Q Consensus 7 ~~~~~~IgiLDi~GFE~~~~~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~ldli~~~p~G 86 (101)
.....+||||||||||+|+ .|+|||||||||||+||++|++++|..++++|.+|||.|..++|.||++|+|||++ |.|
T Consensus 364 ~~~~~~IgiLDI~GFE~f~-~NsfEQLcINyaNEkLQ~~f~~~iF~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~-~~G 441 (691)
T cd01380 364 KKQTSFIGVLDIYGFETFE-KNSFEQFCINYANEKLQQQFNQHVFKLEQEEYLKEGIEWTFIDFYDNQPCIDLIES-KLG 441 (691)
T ss_pred CCccceEEEEecCcccccC-CCCHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCCCHHHHHHHhC-CCc
Confidence 4567899999999999999 99999999999999999999999999999999999999999999999999999996 689
Q ss_pred ccccchhhhhcCCC
Q psy324 87 LLCVLDDQAKSCDR 100 (101)
Q Consensus 87 ll~iLDee~~~~~~ 100 (101)
||++|||||++|++
T Consensus 442 il~lLdee~~~p~~ 455 (691)
T cd01380 442 ILSLLDEECRLPKG 455 (691)
T ss_pred hHHHhHHhhcCCCC
Confidence 99999999999975
No 13
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=100.00 E-value=8.6e-35 Score=235.14 Aligned_cols=97 Identities=46% Similarity=0.820 Sum_probs=92.2
Q ss_pred CCCCCCCceeEEeeeccCcccCCCCcchhhhhhhhhhhHhhhHHhhhhhhhHHHHhhhcCceeeeeeecCchhHHHhhhc
Q psy324 3 LQKKGSYRTLETQLGLKCYELMSNRDGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG 82 (101)
Q Consensus 3 ~~~~~~~~~~IgiLDi~GFE~~~~~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~ldli~~ 82 (101)
|.++.....+||||||||||+|. .|+|||||||||||+||++|++++|..++++|.+|||.|..++|.||++|++||++
T Consensus 361 l~~~~~~~~~IgiLDifGFE~f~-~NsfEQLcINyaNEkLq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dN~~~l~li~~ 439 (677)
T smart00242 361 LSFKDGSTYFIGVLDIYGFEIFE-VNSFEQLCINYANEKLQQFFNQHVFKLEQEEYEREGIDWTFIDFFDNQDCIDLIEK 439 (677)
T ss_pred hcCCCCCceEEEEEecccccccc-cCCHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHHc
Confidence 34455678999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccchhhhhcCCC
Q psy324 83 KPNGLLCVLDDQAKSCDR 100 (101)
Q Consensus 83 ~p~Gll~iLDee~~~~~~ 100 (101)
+|.||+++|||||++|++
T Consensus 440 ~~~Gil~lLdee~~~~~~ 457 (677)
T smart00242 440 KPPGILSLLDEECRFPKA 457 (677)
T ss_pred CCccHHHHHHHHhcCCCC
Confidence 999999999999999975
No 14
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=100.00 E-value=4.8e-34 Score=230.80 Aligned_cols=96 Identities=46% Similarity=0.807 Sum_probs=91.4
Q ss_pred CCCCCCceeEEeeeccCcccCCCCcchhhhhhhhhhhHhhhHHhhhhhhhHHHHhhhcCceeeeeeecCchhHHHhhhcC
Q psy324 4 QKKGSYRTLETQLGLKCYELMSNRDGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGK 83 (101)
Q Consensus 4 ~~~~~~~~~IgiLDi~GFE~~~~~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~ldli~~~ 83 (101)
.++.....+||||||||||+|. .|+|||||||||||+||++|++++|..++++|..|||.|..++|.||++|+|||+++
T Consensus 355 ~~~~~~~~~IgiLDi~GFE~f~-~NsfEQLcINy~NEkLq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dn~~~ldli~~~ 433 (679)
T cd00124 355 KPKDGRSLFIGILDIFGFEIFE-KNSFEQLCINYANEKLQQFFNQHVFKLEQEEYQEEGIDWESIDFTDNQEVIDLIEKK 433 (679)
T ss_pred cCCCCCCceeeEEeccccccCC-CCCHHHHhcccchHHHHHHHHHHHHHHHHHHHHhcCCCccCCcCCCCHHHHHHHhcC
Confidence 4445678899999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccchhhhhcCCC
Q psy324 84 PNGLLCVLDDQAKSCDR 100 (101)
Q Consensus 84 p~Gll~iLDee~~~~~~ 100 (101)
|.||+++|||||++|++
T Consensus 434 ~~Gi~~lLdee~~~~~~ 450 (679)
T cd00124 434 PGGLLSLLDEECLFPKG 450 (679)
T ss_pred CCcHHHHHHHHhCCCCC
Confidence 99999999999999965
No 15
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=99.98 E-value=4.5e-33 Score=227.32 Aligned_cols=97 Identities=25% Similarity=0.351 Sum_probs=86.7
Q ss_pred CCCCCCceeEEeeeccCcccCCC-----CcchhhhhhhhhhhHhhhHHhhhhhhhHHHHhhhcCceeeeeee-cCchhHH
Q psy324 4 QKKGSYRTLETQLGLKCYELMSN-----RDGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCL 77 (101)
Q Consensus 4 ~~~~~~~~~IgiLDi~GFE~~~~-----~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~dn~~~l 77 (101)
++......+||||||||||+|+. .|+|||||||||||+||++|++++|+.++++|..|||+|..+.+ .||++|+
T Consensus 366 ~~~~~~~~~IgiLDIfGFE~f~~n~~~~~NsfEQLcINyaNEkLQq~f~~~vF~~Eq~eY~~EGI~~~~~~~~~dn~~~i 445 (767)
T cd01386 366 SSSHHSIASIMLVDTPGFQNPASQGKDRAATFEELCHNYLQERLQLLFHHRTFVQPLERYAEEGVEVEFDLAEPSPGTTV 445 (767)
T ss_pred CCCCCCCcEEEEEecccccccccccccCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCchhhH
Confidence 44445568999999999999972 38999999999999999999999999999999999999986655 7999999
Q ss_pred HhhhcCC--------------CcccccchhhhhcCCC
Q psy324 78 QLVEGKP--------------NGLLCVLDDQAKSCDR 100 (101)
Q Consensus 78 dli~~~p--------------~Gll~iLDee~~~~~~ 100 (101)
+||+++| .|||++|||||++|+.
T Consensus 446 ~lid~~p~~~~~~~~~~~~~~~GIl~lLDEec~~p~~ 482 (767)
T cd01386 446 ALVDQAPQQVVVPAGLRAEDARGLLWLLDEEALVPGS 482 (767)
T ss_pred HHhhcccccccccchhhccCCCchhhhhhHhhcCCCC
Confidence 9999865 5999999999999985
No 16
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=99.98 E-value=3.4e-33 Score=225.66 Aligned_cols=92 Identities=48% Similarity=0.821 Sum_probs=82.7
Q ss_pred CCceeEEeeeccCcccCCCCcchhhhhhhhhhhHhhhHHhhhhhhhHHHHhhhcCceeeeeee-cCchhHHHhhhcCCCc
Q psy324 8 SYRTLETQLGLKCYELMSNRDGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNG 86 (101)
Q Consensus 8 ~~~~~IgiLDi~GFE~~~~~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~dn~~~ldli~~~p~G 86 (101)
...++||||||||||++. .|+|||||||||||+||++|++++|..++++|.+|||.|..++| .||++|+|||+++|.|
T Consensus 361 ~~~~~IgILDi~GFE~~~-~N~fEQLciNyanErLq~~f~~~~f~~e~~~y~~EgI~~~~i~~~~dn~~~ldLi~~~~~G 439 (689)
T PF00063_consen 361 ENSSSIGILDIFGFENFS-VNSFEQLCINYANERLQQFFNQHIFKSEQEEYKEEGIDWPFIDFNPDNQPCLDLIEKKPKG 439 (689)
T ss_dssp S-SEEEEEEEEE-B---S-SB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCS-GCGHHHHHHHHHHSSTTS
T ss_pred cccccCcccCcccccccc-ccccccceeeeccccccceeeeecccccccccccccccccccccccCchhhhhhhccccCC
Confidence 578999999999999998 99999999999999999999999999999999999999999999 9999999999999999
Q ss_pred ccccchhhhhcCCC
Q psy324 87 LLCVLDDQAKSCDR 100 (101)
Q Consensus 87 ll~iLDee~~~~~~ 100 (101)
||++|||||++|++
T Consensus 440 il~lLdee~~~~~~ 453 (689)
T PF00063_consen 440 ILSLLDEECLLPRG 453 (689)
T ss_dssp HHHHHHHHCTSTTS
T ss_pred HHHHhhhhhhcccc
Confidence 99999999999974
No 17
>KOG0164|consensus
Probab=99.97 E-value=5.3e-32 Score=216.66 Aligned_cols=91 Identities=38% Similarity=0.684 Sum_probs=88.4
Q ss_pred CceeEEeeeccCcccCCCCcchhhhhhhhhhhHhhhHHhhhhhhhHHHHhhhcCceeeeeeecCchhHHHhhhcCCCccc
Q psy324 9 YRTLETQLGLKCYELMSNRDGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 88 (101)
Q Consensus 9 ~~~~IgiLDi~GFE~~~~~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~ldli~~~p~Gll 88 (101)
..+.||||||||||+|+ .|||||||||||||+||+.|++-+++.||+||.+|||+|.+++|.+|..++||++.+..||+
T Consensus 373 ~~~Vigvldiygfeif~-~NSFEQfcINYCNEKLQQlFIel~LKqEQEEY~rEgI~W~~i~YFnN~iIcdLvE~~~~GIl 451 (1001)
T KOG0164|consen 373 GNTVIGVLDIYGFEIFQ-DNSFEQFCINYCNEKLQQLFIELVLKQEQEEYEREGIEWTHIDYFNNKIICDLVEQPHKGIL 451 (1001)
T ss_pred CceEEEEEEeeeEEeec-CCcHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCCceehhhcCCceeeehhccCccchh
Confidence 36899999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhcCCC
Q psy324 89 CVLDDQAKSCDR 100 (101)
Q Consensus 89 ~iLDee~~~~~~ 100 (101)
+||||||+.||.
T Consensus 452 ailDe~Cl~~G~ 463 (1001)
T KOG0164|consen 452 AILDEACLRPGT 463 (1001)
T ss_pred hhhhHHhcCCCc
Confidence 999999999985
No 18
>KOG0161|consensus
Probab=99.97 E-value=4.1e-32 Score=234.07 Aligned_cols=92 Identities=41% Similarity=0.750 Sum_probs=88.7
Q ss_pred CCCceeEEeeeccCcccCCCCcchhhhhhhhhhhHhhhHHhhhhhhhHHHHhhhcCceeeeeee-cCchhHHHhhhcCCC
Q psy324 7 GSYRTLETQLGLKCYELMSNRDGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPN 85 (101)
Q Consensus 7 ~~~~~~IgiLDi~GFE~~~~~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~dn~~~ldli~~~p~ 85 (101)
.+..+|||||||||||+|+ .||||||||||+||+||++|++++|..++++|.+|||.|.+++| .|-+||++||+ +|+
T Consensus 444 ~~~~~fIgvLDiaGFEIfe-~nSFEQLciNytnEkLQqfFnh~mFvlEqeeY~~EgIew~fidfG~Dlq~~idLIE-kp~ 521 (1930)
T KOG0161|consen 444 QQRDYFIGVLDIAGFEIFE-FNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWDFIDFGLDLQPTIDLIE-KPM 521 (1930)
T ss_pred cccCCcceeeeeccccccC-cCCHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHhCCceeeeccccchhhhHHHHh-chh
Confidence 5678999999999999999 99999999999999999999999999999999999999999999 89999999999 588
Q ss_pred cccccchhhhhcCCC
Q psy324 86 GLLCVLDDQAKSCDR 100 (101)
Q Consensus 86 Gll~iLDee~~~~~~ 100 (101)
||+|+|||||++|+-
T Consensus 522 Gi~slLdEEc~~PkA 536 (1930)
T KOG0161|consen 522 GILSLLDEECVVPKA 536 (1930)
T ss_pred hHHHHHHHHHhcCCC
Confidence 999999999999984
No 19
>KOG0163|consensus
Probab=99.96 E-value=1.4e-30 Score=209.69 Aligned_cols=91 Identities=41% Similarity=0.714 Sum_probs=88.8
Q ss_pred CCceeEEeeeccCcccCCCCcchhhhhhhhhhhHhhhHHhhhhhhhHHHHhhhcCceeeeeeecCchhHHHhhhcCCCcc
Q psy324 8 SYRTLETQLGLKCYELMSNRDGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGL 87 (101)
Q Consensus 8 ~~~~~IgiLDi~GFE~~~~~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~ldli~~~p~Gl 87 (101)
.++.+||||||+|||.|. +|||||||||||||+||++|++++++.+|+.|..||+.++.+.|.||++|++||+.|..||
T Consensus 448 ~St~fiGVLDiAGFEyf~-~NSFEQFCINyCNEKLQ~FFNerILkeEQElYekEGLnv~ei~f~DNqDcIeL~E~K~~Gi 526 (1259)
T KOG0163|consen 448 KSTFFIGVLDIAGFEYFA-VNSFEQFCINYCNEKLQKFFNERILKEEQELYEKEGLNVPEIEFTDNQDCIELIEAKSNGI 526 (1259)
T ss_pred cccceeEEEeeccceeee-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEeccchhHHHHHHHhccch
Confidence 467899999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhhcCC
Q psy324 88 LCVLDDQAKSCD 99 (101)
Q Consensus 88 l~iLDee~~~~~ 99 (101)
+.|||||.++|.
T Consensus 527 fdlLDEEaklP~ 538 (1259)
T KOG0163|consen 527 FDLLDEEAKLPK 538 (1259)
T ss_pred hhhhhhhccCCC
Confidence 999999999996
No 20
>KOG0162|consensus
Probab=99.95 E-value=7.9e-29 Score=199.00 Aligned_cols=91 Identities=38% Similarity=0.716 Sum_probs=86.1
Q ss_pred CCCCceeEEeeeccCcccCCCCcchhhhhhhhhhhHhhhHHhhhhhhhHHHHhhhcCceeeeeeecCchhHHHhhhc-CC
Q psy324 6 KGSYRTLETQLGLKCYELMSNRDGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG-KP 84 (101)
Q Consensus 6 ~~~~~~~IgiLDi~GFE~~~~~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~ldli~~-~p 84 (101)
+++...+||||||||||+|+ .|||||+||||.||+||+.|++-+++.||++|.+|||.|.++.|.||.-++|||+. .|
T Consensus 378 ~~~~~~sIGiLDIYGFEIFe-~N~FEQ~CINfVNEKLQQIFIeLTLKaEQEeYvrE~I~WTpIkYFnNKvVCDLIE~K~P 456 (1106)
T KOG0162|consen 378 KGSEEYSIGILDIYGFEIFE-NNGFEQFCINFVNEKLQQIFIELTLKAEQEEYVREGIKWTPIKYFNNKVVCDLIENKRP 456 (1106)
T ss_pred CCccccceeeEEeeeeeecc-cCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcccccchhhcCCeeeeehhhccCC
Confidence 45568899999999999999 99999999999999999999999999999999999999999999999999999986 58
Q ss_pred Ccccccchhhhhc
Q psy324 85 NGLLCVLDDQAKS 97 (101)
Q Consensus 85 ~Gll~iLDee~~~ 97 (101)
+||+++|||.|..
T Consensus 457 PGims~ldD~~At 469 (1106)
T KOG0162|consen 457 PGIMSALDDVCAT 469 (1106)
T ss_pred chHHHHHHHHHHH
Confidence 8999999999864
No 21
>KOG0160|consensus
Probab=99.94 E-value=6e-28 Score=197.53 Aligned_cols=93 Identities=46% Similarity=0.753 Sum_probs=88.8
Q ss_pred CCCCceeEEeeeccCcccCCCCcchhhhhhhhhhhHhhhHHhhhhhhhHHHHhhhcCceeeeeeecCchhHHHhhhcCCC
Q psy324 6 KGSYRTLETQLGLKCYELMSNRDGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPN 85 (101)
Q Consensus 6 ~~~~~~~IgiLDi~GFE~~~~~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~ldli~~~p~ 85 (101)
......+||||||||||.|. .|+||||||||+||+||+.|.+|+|+.++++|..|+|.|..++|.||++|+++++. |.
T Consensus 363 ~~~~~~~igVLDiYgFEsF~-~nsfeQfcINyanEkLqq~fnqHvfk~Eqeey~~e~i~Ws~ief~dNq~~~~lie~-~~ 440 (862)
T KOG0160|consen 363 DPKAERFIGVLDIYGFESFE-VNSFEQFCINYANEKLQQQFNQHVFKLEQEEYTKEEIDWSGIEFRDNQECLDLIEK-PL 440 (862)
T ss_pred CCCccceeeeehcccccccc-cCcHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHhhccccccccCcCccchhhhhcc-cc
Confidence 34468999999999999999 99999999999999999999999999999999999999999999999999999996 99
Q ss_pred cccccchhhhhcCCC
Q psy324 86 GLLCVLDDQAKSCDR 100 (101)
Q Consensus 86 Gll~iLDee~~~~~~ 100 (101)
|++++|||||++|.+
T Consensus 441 Gi~~Llde~c~lp~~ 455 (862)
T KOG0160|consen 441 GILALLDEECMLPKG 455 (862)
T ss_pred chhhccchhccCCCC
Confidence 999999999999965
No 22
>KOG4229|consensus
Probab=99.91 E-value=5e-25 Score=183.69 Aligned_cols=91 Identities=47% Similarity=0.796 Sum_probs=88.2
Q ss_pred CceeEEeeeccCcccCCCCcchhhhhhhhhhhHhhhHHhhhhhhhHHHHhhhcCceeeeeeecCchhHHHhhhcCCCccc
Q psy324 9 YRTLETQLGLKCYELMSNRDGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 88 (101)
Q Consensus 9 ~~~~IgiLDi~GFE~~~~~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~ldli~~~p~Gll 88 (101)
....||||||||||+|. .|+|||+|+|||||++|.++.+++|..++++|..|+|.|..+.|.||..|+++|..||+||+
T Consensus 425 ~~~~IgiLdiFgfE~f~-~nsfEq~~in~Ane~lQ~~fnqhIf~~Eq~ey~~e~I~w~~i~~~dN~~~ldli~~kp~gil 503 (1062)
T KOG4229|consen 425 DILSIGILDIFGFENFE-RNSFEQLCINLANEQLQYYFNQHIFALEQEEYDNESIDWRNIEFADNRRRLDLISPKPMGIL 503 (1062)
T ss_pred ccceeehhhhhcccchh-hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCCCeeeeeeeeccchhhhhccCccchh
Confidence 46899999999999998 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhcCCC
Q psy324 89 CVLDDQAKSCDR 100 (101)
Q Consensus 89 ~iLDee~~~~~~ 100 (101)
.+||||+.||+.
T Consensus 504 ~liDees~fP~~ 515 (1062)
T KOG4229|consen 504 SLIDEESRFPKA 515 (1062)
T ss_pred heecccCcCCch
Confidence 999999999974
No 23
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=52.48 E-value=26 Score=27.47 Aligned_cols=40 Identities=8% Similarity=0.200 Sum_probs=27.9
Q ss_pred CCCceeEEeeeccCcccCCCCcch-hhhhhhhhhhHhhhHHh
Q psy324 7 GSYRTLETQLGLKCYELMSNRDGF-EQLCINYANEHLQYYFN 47 (101)
Q Consensus 7 ~~~~~~IgiLDi~GFE~~~~~n~~-eql~iN~~nE~l~~~~~ 47 (101)
.++...+.|+|+|||-.+- .|+. -+-.++|..++..+|+.
T Consensus 78 ~~~~~~l~vIDtpGfGD~i-dNs~~we~I~~yI~~q~d~yl~ 118 (373)
T COG5019 78 DGFHLNLTVIDTPGFGDFI-DNSKCWEPIVDYIDDQFDQYLD 118 (373)
T ss_pred CCeEEEEEEeccCCccccc-cccccHHHHHHHHHHHHHHHHH
Confidence 4577889999999998766 4532 24556777776666653
No 24
>KOG2655|consensus
Probab=51.51 E-value=23 Score=27.74 Aligned_cols=39 Identities=10% Similarity=0.160 Sum_probs=29.0
Q ss_pred CCceeEEeeeccCcccCCCCcchh-hhhhhhhhhHhhhHHh
Q psy324 8 SYRTLETQLGLKCYELMSNRDGFE-QLCINYANEHLQYYFN 47 (101)
Q Consensus 8 ~~~~~IgiLDi~GFE~~~~~n~~e-ql~iN~~nE~l~~~~~ 47 (101)
++.-.+.|+|+|||--+- -|+.. +-.++|..++..+|+.
T Consensus 76 g~~l~LtvidtPGfGD~v-dns~~w~pi~~yi~~q~~~yl~ 115 (366)
T KOG2655|consen 76 GVKLNLTVIDTPGFGDAV-DNSNCWRPIVNYIDSQFDQYLD 115 (366)
T ss_pred CeEEeeEEeccCCCcccc-cccccchhhhHHHHHHHHHHHh
Confidence 566778999999997765 44432 5677888888888774
No 25
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=48.33 E-value=27 Score=25.73 Aligned_cols=35 Identities=9% Similarity=0.114 Sum_probs=24.2
Q ss_pred eeEEeeeccCcccCCCCcch-hhhhhhhhhhHhhhHH
Q psy324 11 TLETQLGLKCYELMSNRDGF-EQLCINYANEHLQYYF 46 (101)
Q Consensus 11 ~~IgiLDi~GFE~~~~~n~~-eql~iN~~nE~l~~~~ 46 (101)
-.+.|+|+|||..+. .|+. -+-.++|..+++..|.
T Consensus 63 ~~l~iiDTpGfgd~~-~~~~~~~~i~~yi~~q~~~~l 98 (276)
T cd01850 63 LKLTVIDTPGFGDNI-NNSDCWKPIVDYIDDQFDQYL 98 (276)
T ss_pred EEEEEEecCCccccc-cchhhHHHHHHHHHHHHHHHH
Confidence 357899999998765 4432 2566677777776665
No 26
>KOG1547|consensus
Probab=39.27 E-value=59 Score=24.67 Aligned_cols=55 Identities=9% Similarity=0.123 Sum_probs=34.5
Q ss_pred CceeEEeeeccCcccCCCCc--chhhhhhhhhhhHhhhHHhhhhhhhHHHHhhhcCcee
Q psy324 9 YRTLETQLGLKCYELMSNRD--GFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRW 65 (101)
Q Consensus 9 ~~~~IgiLDi~GFE~~~~~n--~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~ 65 (101)
..--+.|+|+|||--+- .| -+ +-.+-|.||+--+|...-+-........+-.+.+
T Consensus 102 VklkltviDTPGfGDqI-nN~ncW-ePI~kyIneQye~yL~eElni~R~kripDTRVHc 158 (336)
T KOG1547|consen 102 VKLKLTVIDTPGFGDQI-NNDNCW-EPIEKYINEQYEQYLREELNIAREKRIPDTRVHC 158 (336)
T ss_pred eEEEEEEecCCCccccc-Cccchh-HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEE
Confidence 45568899999998766 33 34 4556788888777765544443333334444443
No 27
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=36.08 E-value=56 Score=24.22 Aligned_cols=38 Identities=8% Similarity=0.077 Sum_probs=24.6
Q ss_pred CceeEEeeeccCcccCCCCcch-hhhhhhhhhhHhhhHHh
Q psy324 9 YRTLETQLGLKCYELMSNRDGF-EQLCINYANEHLQYYFN 47 (101)
Q Consensus 9 ~~~~IgiLDi~GFE~~~~~n~~-eql~iN~~nE~l~~~~~ 47 (101)
..-.+.|+|+|||...- .|.. -+..++|..++...+..
T Consensus 61 ~~l~LtiiDTpGfGd~i-~n~~~~~~I~~yI~~qf~~~l~ 99 (281)
T PF00735_consen 61 VKLNLTIIDTPGFGDNI-DNSDCWEPIVDYIESQFDSYLE 99 (281)
T ss_dssp EEEEEEEEEEC-CSSSS-THCHHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCccccc-cchhhhHHHHHHHHHHHHHHHH
Confidence 44567899999998654 3432 24666888877776643
No 28
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=32.38 E-value=21 Score=24.65 Aligned_cols=29 Identities=34% Similarity=0.450 Sum_probs=25.6
Q ss_pred hhhhhHhhhHHhhhhhhhHHHHhhhcCce
Q psy324 36 NYANEHLQYYFNQHVFQYEQEEYNKEGIR 64 (101)
Q Consensus 36 N~~nE~l~~~~~~~~f~~~~~~y~~Egi~ 64 (101)
--|++.||.+|.+.-|....++|.+.||+
T Consensus 116 l~AQahLq~fYa~~GFv~~~e~yledGIp 144 (155)
T COG2153 116 LGAQAHLQDFYASFGFVRVGEEYLEDGIP 144 (155)
T ss_pred EehHHHHHHHHHHhCcEEcCchhhcCCCC
Confidence 34788899999999999999999999996
No 29
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=25.38 E-value=49 Score=22.49 Aligned_cols=16 Identities=6% Similarity=-0.280 Sum_probs=12.7
Q ss_pred ceeEEeeeccCcccCC
Q psy324 10 RTLETQLGLKCYELMS 25 (101)
Q Consensus 10 ~~~IgiLDi~GFE~~~ 25 (101)
...|-|+|+|||-...
T Consensus 48 ~~~i~viDTPG~~d~~ 63 (196)
T cd01852 48 GRRVNVIDTPGLFDTS 63 (196)
T ss_pred CeEEEEEECcCCCCcc
Confidence 3568999999987654
No 30
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=25.11 E-value=18 Score=24.85 Aligned_cols=13 Identities=0% Similarity=-0.002 Sum_probs=9.6
Q ss_pred EEeeeccCcccCC
Q psy324 13 ETQLGLKCYELMS 25 (101)
Q Consensus 13 IgiLDi~GFE~~~ 25 (101)
.-|+|+|||..+.
T Consensus 89 ~~iIDTPGf~~~~ 101 (161)
T PF03193_consen 89 GYIIDTPGFRSFG 101 (161)
T ss_dssp EEEECSHHHHT--
T ss_pred cEEEECCCCCccc
Confidence 4689999999887
No 31
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=24.77 E-value=51 Score=23.01 Aligned_cols=14 Identities=7% Similarity=-0.296 Sum_probs=9.3
Q ss_pred ceeEEeeeccCccc
Q psy324 10 RTLETQLGLKCYEL 23 (101)
Q Consensus 10 ~~~IgiLDi~GFE~ 23 (101)
...|-|+|+|||-.
T Consensus 48 g~~v~VIDTPGl~d 61 (212)
T PF04548_consen 48 GRQVTVIDTPGLFD 61 (212)
T ss_dssp TEEEEEEE--SSEE
T ss_pred ceEEEEEeCCCCCC
Confidence 46789999999844
No 32
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=24.36 E-value=86 Score=19.18 Aligned_cols=20 Identities=5% Similarity=0.027 Sum_probs=15.4
Q ss_pred CCCCCCceeEEeeeccCccc
Q psy324 4 QKKGSYRTLETQLGLKCYEL 23 (101)
Q Consensus 4 ~~~~~~~~~IgiLDi~GFE~ 23 (101)
+++-+...++--+|+|||+-
T Consensus 2 ~~~~~~~~~~v~adlPG~~k 21 (87)
T cd06482 2 AASCDSSNVLASVDVCGFEP 21 (87)
T ss_pred cccccCCEEEEEEECCCCCH
Confidence 44556678888899999974
No 33
>KOG3043|consensus
Probab=20.60 E-value=84 Score=23.27 Aligned_cols=15 Identities=7% Similarity=0.080 Sum_probs=12.9
Q ss_pred ceeEEeeeccCcccC
Q psy324 10 RTLETQLGLKCYELM 24 (101)
Q Consensus 10 ~~~IgiLDi~GFE~~ 24 (101)
...|+|-|+|||+-.
T Consensus 40 ~~li~i~DvfG~~~~ 54 (242)
T KOG3043|consen 40 KVLIVIQDVFGFQFP 54 (242)
T ss_pred eEEEEEEeeeccccH
Confidence 678999999999864
No 34
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=20.57 E-value=50 Score=22.27 Aligned_cols=17 Identities=12% Similarity=-0.134 Sum_probs=13.5
Q ss_pred CCceeEEeeeccCcccC
Q psy324 8 SYRTLETQLGLKCYELM 24 (101)
Q Consensus 8 ~~~~~IgiLDi~GFE~~ 24 (101)
.....|.++|+||.+.|
T Consensus 67 ~~~~~i~~iDtPG~~~f 83 (188)
T PF00009_consen 67 ENNRKITLIDTPGHEDF 83 (188)
T ss_dssp ESSEEEEEEEESSSHHH
T ss_pred ccccceeecccccccce
Confidence 35678999999998764
Done!