RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy324
         (101 letters)



>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
           discoideum, class-I myosin MyoE [TaxId: 44689]}
          Length = 684

 Score = 71.6 bits (175), Expect = 8e-17
 Identities = 31/66 (46%), Positives = 44/66 (66%)

Query: 29  GFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 88
            FEQL IN+ NE LQ  F +   + EQEEY +EGI W++IE+ +N    +L+E KP GL+
Sbjct: 389 SFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLI 448

Query: 89  CVLDDQ 94
            +LD+ 
Sbjct: 449 SLLDEA 454


>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
           (Gallus gallus), pectoral muscle [TaxId: 9031]}
          Length = 794

 Score = 67.4 bits (164), Expect = 3e-15
 Identities = 31/75 (41%), Positives = 45/75 (60%)

Query: 24  MSNRDGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGK 83
           + + + FEQLCIN+ NE LQ +FN H+F  EQEEY KEGI W  I+F  +      +  K
Sbjct: 420 IFDFNSFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWEFIDFGMDLAACIELIEK 479

Query: 84  PNGLLCVLDDQAKSC 98
           P G+  +L+++    
Sbjct: 480 PMGIFSILEEECMFP 494


>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
           (Gallus gallus), pectoral muscle [TaxId: 9031]}
          Length = 710

 Score = 65.5 bits (159), Expect = 1e-14
 Identities = 35/78 (44%), Positives = 47/78 (60%), Gaps = 3/78 (3%)

Query: 24  MSNRDGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEG 82
           +   + FEQLCINY NE LQ  FN  +F  EQEEY +EGI W  I+F  D   C++L+E 
Sbjct: 392 IFEINSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIER 451

Query: 83  --KPNGLLCVLDDQAKSC 98
              P G+L +LD++    
Sbjct: 452 PTNPPGVLALLDEECWFP 469


>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
           scallop (Aequipecten irradians) [TaxId: 31199]}
          Length = 789

 Score = 65.5 bits (159), Expect = 1e-14
 Identities = 33/65 (50%), Positives = 43/65 (66%)

Query: 30  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 89
           FEQLCINY NE LQ +FN H+F  EQEEY KEGI W  I+F  +      +  KP G+L 
Sbjct: 424 FEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEKPMGILS 483

Query: 90  VLDDQ 94
           +L+++
Sbjct: 484 ILEEE 488


>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
           (Gallus gallus), Va isoform [TaxId: 9031]}
          Length = 730

 Score = 64.0 bits (155), Expect = 4e-14
 Identities = 38/65 (58%), Positives = 46/65 (70%), Gaps = 1/65 (1%)

Query: 30  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 89
           FEQ CINYANE LQ  FN HVF+ EQEEY KE I W  I+F DN  C+ L+E K  G+L 
Sbjct: 387 FEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVLD 445

Query: 90  VLDDQ 94
           +LD++
Sbjct: 446 LLDEE 450


>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
           {Dictyostelium discoideum [TaxId: 44689]}
          Length = 712

 Score = 60.9 bits (147), Expect = 6e-13
 Identities = 36/69 (52%), Positives = 49/69 (71%), Gaps = 2/69 (2%)

Query: 28  DGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG-KPN 85
           + FEQLCINY NE LQ +FN H+F+ EQEEY KE I W  I+F  D+   + L++G +P 
Sbjct: 417 NSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPP 476

Query: 86  GLLCVLDDQ 94
           G+L +LD+Q
Sbjct: 477 GILALLDEQ 485


>d1e93a_ e.5.1.1 (A:) Catalase I {Proteus mirabilis [TaxId: 584]}
          Length = 476

 Score = 28.3 bits (63), Expect = 0.16
 Identities = 12/56 (21%), Positives = 16/56 (28%), Gaps = 10/56 (17%)

Query: 26  NRDGFEQLCINYANEHLQYYFN--------QHVFQYEQEEYNKEGIRWRHIEFSDN 73
           +RDG  ++  N  N     Y          Q  F+            W H E  D 
Sbjct: 362 HRDGAMRVDGNSGNGI--TYEPNSGGVFQEQPDFKEPPLSIEGAADHWNHREDEDY 415


>d1iyka2 d.108.1.2 (A:225-451) N-myristoyl transferase, NMT {Yeast
           (Candida albicans) [TaxId: 5476]}
          Length = 227

 Score = 23.7 bits (51), Expect = 5.5
 Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 14/72 (19%)

Query: 20  CYELMSNRDGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQL 79
           C     N    +       +  L YY            +N    R   ++   +    ++
Sbjct: 169 CLTCQDNTYFLKDCKFGSGDGFLNYYL-----------FN---YRTFPMDGGIDKKTKEV 214

Query: 80  VEGKPNGLLCVL 91
           VE + +G+  VL
Sbjct: 215 VEDQTSGIGVVL 226


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.138    0.428 

Gapped
Lambda     K      H
   0.267   0.0521    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 374,081
Number of extensions: 15429
Number of successful extensions: 49
Number of sequences better than 10.0: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 14
Length of query: 101
Length of database: 2,407,596
Length adjustment: 62
Effective length of query: 39
Effective length of database: 1,556,336
Effective search space: 60697104
Effective search space used: 60697104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.4 bits)