BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3240
(274 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GCG|A Chain A, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|B Chain B, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|C Chain C, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|D Chain D, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2WWR|A Chain A, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|B Chain B, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|C Chain C, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|D Chain D, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
Length = 330
Score = 115 bits (288), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 94/161 (58%), Gaps = 5/161 (3%)
Query: 25 GEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKP-EADKR 83
G W SW P ++CG L STVGI+G GRIG ++ +L P+ V +FLYT R +P EA +
Sbjct: 138 GGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEF 197
Query: 84 GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALI 143
AE + +L QSDFI++ +LTP T L N+ + MK A+ IN SRG +V+Q+ L
Sbjct: 198 QAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLY 257
Query: 144 DFIADIRVISISM-VTNEKHL---HRVFTLGDSFHKGHVSA 180
+A ++ + + VT+ + L H + TL + H+ +
Sbjct: 258 QALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGS 298
>pdb|2H1S|A Chain A, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|B Chain B, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|C Chain C, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|D Chain D, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2Q50|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|C Chain C, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|D Chain D, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
Length = 328
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 93/161 (57%), Gaps = 5/161 (3%)
Query: 25 GEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKP-EADKR 83
G W SW P ++CG L STVGI+G GRIG ++ +L P+ V +FLYT R +P EA +
Sbjct: 136 GGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEF 195
Query: 84 GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALI 143
AE + +L QSDFI++ +LTP T L N+ + K A+ IN SRG +V+Q+ L
Sbjct: 196 QAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKXKETAVFINISRGDVVNQDDLY 255
Query: 144 DFIADIRVISISM-VTNEKHL---HRVFTLGDSFHKGHVSA 180
+A ++ + + VT+ + L H + TL + H+ +
Sbjct: 256 QALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGS 296
>pdb|2CUK|A Chain A, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|B Chain B, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|C Chain C, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|D Chain D, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
Length = 311
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/242 (29%), Positives = 111/242 (45%), Gaps = 64/242 (26%)
Query: 25 GEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRG 84
G WK+W P + G LQ T+G+VG GRIG +V ++ + + + + +Y +R+ KP
Sbjct: 127 GLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRALAFGM-RVVYHARTPKPLP---- 181
Query: 85 AEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALID 144
++++L K++D + + + LTP+TH L+NR RL +MK GAIL+NT+RG LVD EAL++
Sbjct: 182 YPFLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALVE 241
Query: 145 FIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVL 204
+ +GH +F A
Sbjct: 242 AL----------------------------RGH-------------------LFGA---- 250
Query: 205 KAKKIRGAGLDVMYXXXXXXXXXXXXXDNCVILPHIGSAQIETRQEMARITAQNIINTFH 264
GLDV N VI PHIGSA TR+ MA + +N++
Sbjct: 251 --------GLDVTDPEPLPPGHPLYALPNAVITPHIGSAGRTTRERMAEVAVENLLAVLE 302
Query: 265 NK 266
+
Sbjct: 303 GR 304
>pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|B Chain B, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|C Chain C, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|D Chain D, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
Length = 333
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 77/127 (60%), Gaps = 6/127 (4%)
Query: 24 RGEWKSWAP---NFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEA 80
RGEW+S A F +L VGI+G G IG ++ +LIP+ V K Y SR +K
Sbjct: 125 RGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIARRLIPFGV-KLYYWSRHRKVNV 183
Query: 81 DKR-GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQ 139
+K A + +ID+L ++SD +I+ LT DT+H+IN R++ ++ G L+N RG LVD+
Sbjct: 184 EKELKARYMDIDELLEKSDIVILALPLTRDTYHIINEERVKKLE-GKYLVNIGRGALVDE 242
Query: 140 EALIDFI 146
+A+ + I
Sbjct: 243 KAVTEAI 249
>pdb|4E5P|A Chain A, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|B Chain B, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|C Chain C, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|D Chain D, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|E Chain E, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|F Chain F, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
Length = 332
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 69/120 (57%), Gaps = 2/120 (1%)
Query: 25 GEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKR- 83
G+++ W P F G L N+TVG +G G IGL++ ++L + + + ++ + ++R
Sbjct: 129 GQFRGWQPRFY-GTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHARKALDTQTEQRL 187
Query: 84 GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALI 143
G +L SDFI++ L DT HL+N L ++PGA+L+N RG +VD+ A++
Sbjct: 188 GLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVL 247
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 20/40 (50%)
Query: 233 NCVILPHIGSAQIETRQEMARITAQNIINTFHNKPMIYEV 272
N + PHIGSA R E+ R AQNI+ + I V
Sbjct: 286 NTLFTPHIGSAVRAVRLEIERCAAQNILQALAGERPINAV 325
>pdb|4E5M|A Chain A, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX
WITH NADP
pdb|4E5M|B Chain B, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX
WITH NADP
Length = 329
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 69/120 (57%), Gaps = 2/120 (1%)
Query: 25 GEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKR- 83
G+++ W P F G L N+TVG +G G IGL++ ++L + + + ++ + ++R
Sbjct: 129 GQFRGWQPRFY-GTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHARKALDTQTEQRL 187
Query: 84 GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALI 143
G +L SDFI++ L DT HL+N L ++PGA+L+N RG +VD+ A++
Sbjct: 188 GLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVL 247
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 20/40 (50%)
Query: 233 NCVILPHIGSAQIETRQEMARITAQNIINTFHNKPMIYEV 272
N + PHIGSA R E+ R AQNI+ + I V
Sbjct: 286 NTLFTPHIGSAVRAVRLEIERCAAQNILQALAGERPINAV 325
>pdb|4E5K|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|B Chain B, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|C Chain C, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|D Chain D, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
Length = 329
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 70/120 (58%), Gaps = 2/120 (1%)
Query: 25 GEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKR- 83
G+++ W P F G L N+TVG +G G IGL++ ++L + + + +++ + ++R
Sbjct: 129 GKFRGWQPRFY-GTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRL 187
Query: 84 GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALI 143
G +L SDFI++ L DT HL+N L ++PGA+L+N RG +VD+ A++
Sbjct: 188 GLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVL 247
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 20/40 (50%)
Query: 233 NCVILPHIGSAQIETRQEMARITAQNIINTFHNKPMIYEV 272
N + PHIGSA R E+ R AQNI+ + I V
Sbjct: 286 NTLFTPHIGSAVRAVRLEIERCAAQNILQALAGERPINAV 325
>pdb|4E5N|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|B Chain B, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|C Chain C, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|D Chain D, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|E Chain E, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|F Chain F, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|G Chain G, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|H Chain H, Thermostable Phosphite Dehydrogenase In Complex With Nad
Length = 330
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 70/120 (58%), Gaps = 2/120 (1%)
Query: 25 GEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKR- 83
G+++ W P F G L N+TVG +G G IGL++ ++L + + + +++ + ++R
Sbjct: 129 GKFRGWQPRFY-GTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRL 187
Query: 84 GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALI 143
G +L SDFI++ L DT HL+N L ++PGA+L+N RG +VD+ A++
Sbjct: 188 GLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVL 247
Score = 31.2 bits (69), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 20/40 (50%)
Query: 233 NCVILPHIGSAQIETRQEMARITAQNIINTFHNKPMIYEV 272
N + PHIGSA R E+ R AQNI+ + I V
Sbjct: 286 NTLFTPHIGSAVRAVRLEIERCAAQNILQALAGERPINAV 325
>pdb|4EBF|A Chain A, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|B Chain B, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|C Chain C, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|D Chain D, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|E Chain E, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|F Chain F, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
Length = 334
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 69/120 (57%), Gaps = 2/120 (1%)
Query: 25 GEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKR- 83
G+++ W P F G L N+TVG +G G IGL+ ++L + + + +++ + ++R
Sbjct: 130 GQFRGWQPRFY-GTGLDNATVGFLGXGAIGLAXADRLQGWGATLQYHAAKALDTQTEQRL 188
Query: 84 GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALI 143
G +L SDFI++ L DT HL+N L ++PGA+L+N RG +VD+ A++
Sbjct: 189 GLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVL 248
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 20/40 (50%)
Query: 233 NCVILPHIGSAQIETRQEMARITAQNIINTFHNKPMIYEV 272
N + PHIGSA R E+ R AQNI+ + I V
Sbjct: 287 NTLFTPHIGSAVRAVRLEIERCAAQNILQALAGERPINAV 326
>pdb|3BA1|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus
Blu
pdb|3BAZ|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus
Blumei In Complex With Nadp+
Length = 333
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 85/173 (49%), Gaps = 9/173 (5%)
Query: 24 RGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKR 83
RG WK +F VGI+G GRIGL+V E+ + Y SRSKKP +
Sbjct: 148 RGAWKFG--DFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCP-ISYFSRSKKPNTNY- 203
Query: 84 GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALI 143
+ ++ +L SD +++ LTP+T H+INR ++++ P +LIN RG VD+ L+
Sbjct: 204 -TYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELV 262
Query: 144 DFIADIRVISISMVTNEKH---LHRVFTLGDSFHKGHV-SAFIFIHMIMGDTV 192
+ + R+ + E+ ++F L + HV S + +M D V
Sbjct: 263 SALVEGRLGGAGLDVFEREPEVPEKLFGLENVVLLPHVGSGTVETRKVMADLV 315
>pdb|1YGY|A Chain A, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase
From Mycobacterium Tuberculosis
pdb|1YGY|B Chain B, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase
From Mycobacterium Tuberculosis
pdb|3DC2|A Chain A, Crystal Structure Of Serine Bound D-3-Phosphoglycerate
Dehydrogenase From Mycobacterium Tuberculosis
pdb|3DC2|B Chain B, Crystal Structure Of Serine Bound D-3-Phosphoglycerate
Dehydrogenase From Mycobacterium Tuberculosis
Length = 529
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 63/118 (53%)
Query: 29 SWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHT 88
+W + G + TVG+VG GRIG V +++ + Y A + G E
Sbjct: 129 TWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIELL 188
Query: 89 NIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFI 146
++DDL ++DFI + TP+T LI++ L KPG I++N +RG LVD+ AL D I
Sbjct: 189 SLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAI 246
>pdb|3DDN|A Chain A, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound
D-3- Phosphoglycerate Dehydrogenase In Mycobacterium
Tuberculosis
pdb|3DDN|B Chain B, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound
D-3- Phosphoglycerate Dehydrogenase In Mycobacterium
Tuberculosis
Length = 528
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 63/118 (53%)
Query: 29 SWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHT 88
+W + G + TVG+VG GRIG V +++ + Y A + G E
Sbjct: 128 TWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIELL 187
Query: 89 NIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFI 146
++DDL ++DFI + TP+T LI++ L KPG I++N +RG LVD+ AL D I
Sbjct: 188 SLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAI 245
>pdb|1GDH|A Chain A, Crystal Structure Of A Nad-Dependent D-Glycerate
Dehydrogenase At 2.4 Angstroms Resolution
pdb|1GDH|B Chain B, Crystal Structure Of A Nad-Dependent D-Glycerate
Dehydrogenase At 2.4 Angstroms Resolution
Length = 320
Score = 77.4 bits (189), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 65/119 (54%), Gaps = 2/119 (1%)
Query: 27 WKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVS-KFLYTSR-SKKPEADKRG 84
W W P + G L N T+GI G G IG ++ ++ + + + T R S EA +
Sbjct: 131 WPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQA 190
Query: 85 AEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALI 143
H ++D L S F + + TP+T + N+A ++S+ GAI++NT+RG LVD E ++
Sbjct: 191 TFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVV 249
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 4/91 (4%)
Query: 182 IFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYXXXXXXXXXXXXXDNCVILPHIG 241
I ++ GD V + +A L+A ++ AG DV + N + PHIG
Sbjct: 233 IVVNTARGDLVDNELVVAA---LEAGRLAYAGFDV-FAGEPNINEGYYDLPNTFLFPHIG 288
Query: 242 SAQIETRQEMARITAQNIINTFHNKPMIYEV 272
SA + R++MA I F M Y +
Sbjct: 289 SAATQAREDMAHQANDLIDALFGGADMSYAL 319
>pdb|2DBR|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|B Chain B, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|C Chain C, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|D Chain D, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|E Chain E, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|F Chain F, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBZ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P61)
pdb|2DBZ|B Chain B, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P61)
Length = 334
Score = 74.3 bits (181), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 80/129 (62%), Gaps = 6/129 (4%)
Query: 25 GEWKSWA----PNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEA 80
GEWK P + G + T+GI+G GRIG ++ ++ + + + LY SR++K E
Sbjct: 129 GEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNM-RILYYSRTRKEEV 187
Query: 81 DKR-GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQ 139
++ AE ++DL ++SDF+++ LT +T+HLIN RL+ MK AILIN +RG++VD
Sbjct: 188 ERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIARGKVVDT 247
Query: 140 EALIDFIAD 148
AL+ + +
Sbjct: 248 NALVKALKE 256
>pdb|2DLD|A Chain A, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate
pdb|2DLD|B Chain B, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate
Length = 337
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 71/134 (52%), Gaps = 3/134 (2%)
Query: 30 WAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTN 89
WAP G +++ VG+VG G IG V +++ +K + K PE +K+G +
Sbjct: 136 WAPT--IGREVRDQVVGVVGTGHIG-QVFMRIMEGFGAKVIAYDIFKNPELEKKGYYVDS 192
Query: 90 IDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADI 149
+DDL KQ+D I + P H+IN + MK G +++N SRG+LVD +A+I +
Sbjct: 193 LDDLYKQADVISLHVPDVPANVHMINDKSIAEMKDGVVIVNCSRGRLVDTDAVIRGLDSG 252
Query: 150 RVISISMVTNEKHL 163
++ M T E +
Sbjct: 253 KIFGFVMDTYEDEV 266
>pdb|2GSD|A Chain A, Nad-dependent Formate Dehydrogenase From Bacterium
Moraxella Sp.c2 In Complex With Nad And Azide
Length = 402
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 61/110 (55%), Gaps = 4/110 (3%)
Query: 45 VGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAE---HTNIDDLCKQSDFII 101
VG V GRIGL VL L P+ + YT R + PEA ++ H +D+ D +
Sbjct: 195 VGTVAAGRIGLRVLRLLAPFDM-HLHYTDRHRLPEAVEKELNLTWHATREDMYGACDVVT 253
Query: 102 ITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRV 151
+ L P+T H+IN L+ K GA L+NT+RG+L D++A++ + R+
Sbjct: 254 LNCPLHPETEHMINDETLKLFKRGAYLVNTARGKLCDRDAIVRALESGRL 303
>pdb|2GUG|A Chain A, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|B Chain B, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|C Chain C, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|D Chain D, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
Length = 401
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 64/115 (55%), Gaps = 4/115 (3%)
Query: 40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAE---HTNIDDLCKQ 96
L+ VG V GRIGL+VL +L P+ V YT R + PE+ ++ H +D+
Sbjct: 190 LEAMHVGTVAAGRIGLAVLRRLAPFDV-HLHYTDRHRLPESVEKELNLTWHATREDMYPV 248
Query: 97 SDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRV 151
D + + L P+T H+IN L+ K GA ++NT+RG+L D++A+ + R+
Sbjct: 249 CDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRL 303
>pdb|2GO1|A Chain A, Nad-Dependent Formate Dehydrogenase From Pseudomonas
Sp.101
Length = 401
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 64/115 (55%), Gaps = 4/115 (3%)
Query: 40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAE---HTNIDDLCKQ 96
L+ VG V GRIGL+VL +L P+ V YT R + PE+ ++ H +D+
Sbjct: 190 LEAMHVGTVAAGRIGLAVLRRLAPFDV-HLHYTDRHRLPESVEKELNLTWHATREDMYPV 248
Query: 97 SDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRV 151
D + + L P+T H+IN L+ K GA ++NT+RG+L D++A+ + R+
Sbjct: 249 CDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRL 303
>pdb|3FN4|A Chain A, Apo-form Of Nad-dependent Formate Dehydrogenase From
Bacterium Moraxella Sp.c-1 In Closed Conformation
Length = 401
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 61/110 (55%), Gaps = 4/110 (3%)
Query: 45 VGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAE---HTNIDDLCKQSDFII 101
VG V GRIGL VL L P+ + YT R + PEA ++ H +D+ D +
Sbjct: 194 VGTVAAGRIGLRVLRLLAPFDM-HLHYTDRHRLPEAVEKELNLTWHATREDMYGACDVVT 252
Query: 102 ITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRV 151
+ L P+T H+IN L+ K GA L+NT+RG+L D++A++ + R+
Sbjct: 253 LNCPLHPETEHMINDETLKLFKRGAYLVNTARGKLCDRDAIVRALESGRL 302
>pdb|2NAC|A Chain A, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAC|B Chain B, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAD|A Chain A, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAD|B Chain B, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
Length = 393
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 64/115 (55%), Gaps = 4/115 (3%)
Query: 40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAE---HTNIDDLCKQ 96
L+ VG V GRIGL+VL +L P+ V YT R + PE+ ++ H +D+
Sbjct: 189 LEAMHVGTVAAGRIGLAVLRRLAPFDV-HLHYTDRHRLPESVEKELNLTWHATREDMYPV 247
Query: 97 SDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRV 151
D + + L P+T H+IN L+ K GA ++NT+RG+L D++A+ + R+
Sbjct: 248 CDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRL 302
>pdb|2DBQ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (I41)
Length = 334
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 78/129 (60%), Gaps = 6/129 (4%)
Query: 25 GEWKSWA----PNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEA 80
GEWK P + G + T+GI+G GRIG ++ ++ + + LY SR++K E
Sbjct: 129 GEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFN-XRILYYSRTRKEEV 187
Query: 81 DKR-GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQ 139
++ AE ++DL ++SDF+++ LT +T+HLIN RL+ K AILIN +RG++VD
Sbjct: 188 ERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLXKKTAILINIARGKVVDT 247
Query: 140 EALIDFIAD 148
AL+ + +
Sbjct: 248 NALVKALKE 256
>pdb|4G2N|A Chain A, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|B Chain B, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|C Chain C, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|D Chain D, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
Length = 345
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 64/123 (52%), Gaps = 2/123 (1%)
Query: 25 GEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRG 84
G W W P + G L +GI G GRIG ++ + + ++ Y +R++ A + G
Sbjct: 156 GSWPGWGPTQLLGXGLTGRRLGIFGXGRIGRAIATRARGFGLA-IHYHNRTRLSHALEEG 214
Query: 85 A-EHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALI 143
A H +D L SD +I + P+ ++ R+ + GA++IN SRG L++ +ALI
Sbjct: 215 AIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLINDDALI 274
Query: 144 DFI 146
+ +
Sbjct: 275 EAL 277
>pdb|2FSS|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|B Chain B, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|C Chain C, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|D Chain D, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
Length = 365
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 56/100 (56%), Gaps = 3/100 (3%)
Query: 40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--ADKRGAEHT-NIDDLCKQ 96
++ T+ +G GRIG VLE+L+P+ + LY P+ +K GA NI++L Q
Sbjct: 163 IEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEEKVGARRVENIEELVAQ 222
Query: 97 SDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQL 136
+D + + + L T LIN+ L K GA L+NT+RG +
Sbjct: 223 ADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAI 262
>pdb|3KB6|A Chain A, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|B Chain B, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|C Chain C, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|D Chain D, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
Length = 334
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
Query: 40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDF 99
L T+G++G GRIG V + + K L K+ + ++G +T++D+L K+SD
Sbjct: 139 LNRLTLGVIGTGRIGSRVAXYGLAFG-XKVLCYDVVKREDLKEKGCVYTSLDELLKESDV 197
Query: 100 IIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEAL 142
I + T +THH IN R+ K G LINT+RG++VD +AL
Sbjct: 198 ISLHVPYTKETHHXINEERISLXKDGVYLINTARGKVVDTDAL 240
>pdb|2J6I|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|B Chain B, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|C Chain C, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|D Chain D, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
Length = 364
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 56/100 (56%), Gaps = 3/100 (3%)
Query: 40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--ADKRGAEHT-NIDDLCKQ 96
++ T+ +G GRIG VLE+L+P+ + LY P+ +K GA NI++L Q
Sbjct: 162 IEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEEKVGARRVENIEELVAQ 221
Query: 97 SDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQL 136
+D + + + L T LIN+ L K GA L+NT+RG +
Sbjct: 222 ADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAI 261
>pdb|1J49|A Chain A, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J49|B Chain B, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
Length = 333
Score = 67.4 bits (163), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 62/114 (54%), Gaps = 3/114 (2%)
Query: 30 WAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTN 89
WAP G +++ VG+VG G IG V +++ +K + + PE +K+G +
Sbjct: 136 WAPT--IGREVRDQVVGVVGTGHIG-QVFMQIMEGFGAKVITYDIFRNPELEKKGYYVDS 192
Query: 90 IDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALI 143
+DDL KQ+D I + P H+IN + MK +++N SRG LVD +A+I
Sbjct: 193 LDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVI 246
>pdb|1J4A|A Chain A, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|B Chain B, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|C Chain C, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|D Chain D, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
Length = 333
Score = 67.4 bits (163), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 62/114 (54%), Gaps = 3/114 (2%)
Query: 30 WAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTN 89
WAP G +++ VG+VG G IG V +++ +K + + PE +K+G +
Sbjct: 136 WAPT--IGREVRDQVVGVVGTGHIG-QVFMQIMEGFGAKVITYDIFRNPELEKKGYYVDS 192
Query: 90 IDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALI 143
+DDL KQ+D I + P H+IN + MK +++N SRG LVD +A+I
Sbjct: 193 LDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVI 246
>pdb|3NAQ|A Chain A, Apo-Form Of Nad-Dependent Formate Dehydrogenase From
Higher-Plant Arabidopsis Thaliana
pdb|3NAQ|B Chain B, Apo-Form Of Nad-Dependent Formate Dehydrogenase From
Higher-Plant Arabidopsis Thaliana
Length = 357
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 69/125 (55%), Gaps = 3/125 (2%)
Query: 24 RGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKR 83
+GEW + L+ T+G VG GRIG +L++L P+ + + PE +K
Sbjct: 153 KGEWNVAGIAYRA-YDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKE 211
Query: 84 -GAEHT-NIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEA 141
GA+ +++++ + D I+I LT T + N+ + +K G +++N +RG +++++A
Sbjct: 212 TGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQA 271
Query: 142 LIDFI 146
++D +
Sbjct: 272 VVDAV 276
>pdb|3N7U|A Chain A, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|B Chain B, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|C Chain C, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|D Chain D, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|E Chain E, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|F Chain F, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|G Chain G, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|H Chain H, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|I Chain I, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|J Chain J, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|K Chain K, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|L Chain L, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3JTM|A Chain A, Structure Of Recombinant Formate Dehydrogenase From
Arabidopsis Thaliana
Length = 351
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 69/125 (55%), Gaps = 3/125 (2%)
Query: 24 RGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKR 83
+GEW + L+ T+G VG GRIG +L++L P+ + + PE +K
Sbjct: 147 KGEWNVAGIAYRA-YDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKE 205
Query: 84 -GAEHT-NIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEA 141
GA+ +++++ + D I+I LT T + N+ + +K G +++N +RG +++++A
Sbjct: 206 TGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQA 265
Query: 142 LIDFI 146
++D +
Sbjct: 266 VVDAV 270
>pdb|1DXY|A Chain A, Structure Of D-2-Hydroxyisocaproate Dehydrogenase
Length = 333
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 63/133 (47%), Gaps = 2/133 (1%)
Query: 37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQ 96
G L TVG++G G IG ++ + Y K D ++ +++DL KQ
Sbjct: 140 GKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMK--GDHPDFDYVSLEDLFKQ 197
Query: 97 SDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISM 156
SD I + H+IN A MKPGAI+INT+R L+D +A++ + ++ + +
Sbjct: 198 SDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGI 257
Query: 157 VTNEKHLHRVFTL 169
T E + L
Sbjct: 258 DTYEYETEDLLNL 270
>pdb|2YQ4|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|B Chain B, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|C Chain C, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|D Chain D, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ5|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|B Chain B, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|C Chain C, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|D Chain D, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
Length = 343
Score = 63.9 bits (154), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 66/127 (51%), Gaps = 17/127 (13%)
Query: 29 SWAPNFMCGPALQNSTVGIVGCGRIGLSVLE-------KLIPYKVSKFLYTSRSKKPEAD 81
+W N + + N TVG++G G IG +V E K+I Y V+ PE +
Sbjct: 136 TWPSNLISN-EIYNLTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAY--------NPEFE 186
Query: 82 KRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEA 141
+T+ D + K++D + + + L P T ++I +L+ MK A LIN +RG+LVD A
Sbjct: 187 PF-LTYTDFDTVLKEADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGELVDTGA 245
Query: 142 LIDFIAD 148
LI + D
Sbjct: 246 LIKALQD 252
>pdb|1MX3|A Chain A, Crystal Structure Of Ctbp Dehydrogenase Core Holo Form
Length = 347
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 62/122 (50%), Gaps = 1/122 (0%)
Query: 40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEH-TNIDDLCKQSD 98
++ T+GI+G GR+G +V + + + Y G + + + DL SD
Sbjct: 166 IRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSD 225
Query: 99 FIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVT 158
+ + L HHLIN ++ M+ GA L+NT+RG LVD++AL + + R+ ++
Sbjct: 226 CVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDV 285
Query: 159 NE 160
+E
Sbjct: 286 HE 287
>pdb|3GG9|A Chain A, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|B Chain B, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|C Chain C, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|D Chain D, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
Length = 352
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 59/113 (52%), Gaps = 1/113 (0%)
Query: 32 PNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRG-AEHTNI 90
PNF G L+ T+GI G G+IG V + ++ ++ + K A G A +
Sbjct: 150 PNFGIGRVLKGQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENSKERARADGFAVAESK 209
Query: 91 DDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALI 143
D L +QSD + + L +T +I A L MKP A+ +NTSR +LV++ ++
Sbjct: 210 DALFEQSDVLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEENGMV 262
>pdb|1HL3|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK
PEPTIDE
pdb|2HU2|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND RRTGAPPAL
Peptide
Length = 358
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 62/122 (50%), Gaps = 1/122 (0%)
Query: 40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEH-TNIDDLCKQSD 98
++ T+GI+G GR+G +V + + + Y G + + + DL SD
Sbjct: 169 IRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGIERALGLQRVSTLQDLLFHSD 228
Query: 99 FIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVT 158
+ + L HHLIN ++ M+ GA L+NT+RG LVD++AL + + R+ ++
Sbjct: 229 CVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDV 288
Query: 159 NE 160
+E
Sbjct: 289 HE 290
>pdb|1HKU|A Chain A, CtbpBARS: A DUAL-Function Protein Involved In
Transcription Corepression And Golgi Membrane Fission
Length = 358
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 62/122 (50%), Gaps = 1/122 (0%)
Query: 40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEH-TNIDDLCKQSD 98
++ T+GI+G GR+G +V + + + Y G + + + DL SD
Sbjct: 169 IRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGIERALGLQRVSTLQDLLFHSD 228
Query: 99 FIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVT 158
+ + L HHLIN ++ M+ GA L+NT+RG LVD++AL + + R+ ++
Sbjct: 229 CVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDV 288
Query: 159 NE 160
+E
Sbjct: 289 HE 290
>pdb|2OME|A Chain A, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|B Chain B, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|C Chain C, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|D Chain D, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|E Chain E, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|F Chain F, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|G Chain G, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|H Chain H, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
Length = 336
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 1/122 (0%)
Query: 40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHT-NIDDLCKQSD 98
++ T+G++G GR G +V + + S Y + G + + DL QSD
Sbjct: 150 IRGETLGLIGFGRTGQAVAVRAKAFGFSVIFYDPYLQDGIERSLGVQRVYTLQDLLYQSD 209
Query: 99 FIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVT 158
+ + L HHLIN ++ M+ GA L+N +RG LVD++AL + + R+ ++
Sbjct: 210 CVSLHCNLNEHNHHLINDFTIKQMRQGAFLVNAARGGLVDEKALAQALKEGRIRGAALDV 269
Query: 159 NE 160
+E
Sbjct: 270 HE 271
>pdb|2EKL|A Chain A, Structure Of St1218 Protein From Sulfolobus Tokodaii
Length = 313
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 72/138 (52%), Gaps = 9/138 (6%)
Query: 16 YVSTPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIG--LSVLEKLIPYKVSKFLYTS 73
Y S ++ G +K + G L T+GIVG GRIG + ++ + KV Y
Sbjct: 121 YTSMALAKSGIFKK-----IEGLELAGKTIGIVGFGRIGTKVGIIANAMGMKV--LAYDI 173
Query: 74 RSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSR 133
+ +A+K A+ ++++L K SD I + ++ D +I+ + E MK I++NTSR
Sbjct: 174 LDIREKAEKINAKAVSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSR 233
Query: 134 GQLVDQEALIDFIADIRV 151
V+ +AL+D+I +V
Sbjct: 234 AVAVNGKALLDYIKKGKV 251
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 232 DNCVILPHIGSAQIETRQEMARITAQNIINTFHNKPMI 269
+ ++ HIG+ E ++ +A +T QN++N MI
Sbjct: 276 ERVIVTTHIGAQTKEAQKRVAEMTTQNLLNAMKELGMI 313
>pdb|1XDW|A Chain A, Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase From
Acidaminococcus Fermentans
Length = 331
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 62/113 (54%), Gaps = 2/113 (1%)
Query: 34 FMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDL 93
FM ++N TVG+VG GRIG + I + + + + + + ++D++
Sbjct: 138 FMFSKEVRNCTVGVVGLGRIGRVAAQ--IFHGMGATVIGEDVFEIKGIEDYCTQVSLDEV 195
Query: 94 CKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFI 146
++SD I I + + ++ R L+ MK GAIL+N +RGQLVD EA+I+ +
Sbjct: 196 LEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAV 248
>pdb|1WWK|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Pyrococcus Horikoshii Ot3
pdb|1WWK|B Chain B, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Pyrococcus Horikoshii Ot3
Length = 307
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 45/80 (56%)
Query: 69 FLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAIL 128
LY + A + + +++ L K+SD + I L T+HLIN RL+ MK AIL
Sbjct: 169 LLYDPYPNEERAKEVNGKFVDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAIL 228
Query: 129 INTSRGQLVDQEALIDFIAD 148
INTSRG +VD AL+ + +
Sbjct: 229 INTSRGPVVDTNALVKALKE 248
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 54/130 (41%), Gaps = 9/130 (6%)
Query: 134 GQLVDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVG 193
G+ VD E L+ +D+ I + +V + HL + + K I I+ G V
Sbjct: 185 GKFVDLETLLKE-SDVVTIHVPLVESTYHL-----INEERLKLMKKTAILINTSRGPVVD 238
Query: 194 IYFIFSASDVLKAKKIRGAGLDVMYXXXXXXXXXXXXXDNCVILPHIGSAQIETRQEMAR 253
+ A LK I GAGLDV DN V+ PHIG++ +E ++
Sbjct: 239 TNALVKA---LKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTPHIGASTVEAQERAGV 295
Query: 254 ITAQNIINTF 263
A+ ++
Sbjct: 296 EVAEKVVKIL 305
>pdb|3GA0|A Chain A, Ctbp1BARS GLY172->glu Mutant Structure: Impairing Nad(H)
Binding And Dimerization
Length = 358
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 1/122 (0%)
Query: 40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEH-TNIDDLCKQSD 98
++ T+GI+G R+G +V + + + Y G + + + DL SD
Sbjct: 169 IRGETLGIIGLERVGQAVALRAKAFGFNVLFYDPYLSDGIERALGLQRVSTLQDLLFHSD 228
Query: 99 FIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVT 158
+ + L HHLIN ++ M+ GA L+NT+RG LVD++AL + + R+ ++
Sbjct: 229 CVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDV 288
Query: 159 NE 160
+E
Sbjct: 289 HE 290
>pdb|2W2L|D Chain D, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a
Length = 348
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 64/119 (53%), Gaps = 8/119 (6%)
Query: 50 CGRIGLSVLEKLIPYKVSKFL------YTSRSKKPEADKR-GAEHTN-IDDLCKQSDFII 101
G +GL ++K I K L Y E +K GAE + +++L ++SD +
Sbjct: 166 LGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVS 225
Query: 102 ITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNE 160
++ THHLI+ A +MKPG+ ++NT+RG ++ Q+ALI + +++S + +E
Sbjct: 226 VSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHE 284
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 203 VLKAKKIRGAGLDVMYXXXXXXXXXXXXXDNCVILPHIGSAQIETRQEMARITAQNIIN- 261
LK+ K+ AGLDV + + + HIG IET E R+T NI
Sbjct: 269 ALKSGKLLSAGLDV-HEFEPQVSKELIEMKHVTLTTHIGGVAIETFHEFERLTMTNIDRF 327
Query: 262 TFHNKPMI 269
KP++
Sbjct: 328 LLQGKPLL 335
>pdb|2W2K|B Chain B, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis
D-Mandelate Dehydrogenase At 1.8a
Length = 348
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 64/119 (53%), Gaps = 8/119 (6%)
Query: 50 CGRIGLSVLEKLIPYKVSKFL------YTSRSKKPEADKR-GAEHTN-IDDLCKQSDFII 101
G +GL ++K I K L Y E +K GAE + +++L ++SD +
Sbjct: 166 LGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVS 225
Query: 102 ITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNE 160
++ THHLI+ A +MKPG+ ++NT+RG ++ Q+ALI + +++S + +E
Sbjct: 226 VSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHE 284
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 203 VLKAKKIRGAGLDVMYXXXXXXXXXXXXXDNCVILPHIGSAQIETRQEMARITAQNIIN- 261
LK+ K+ AGLDV + + + HIG IET E R+T NI
Sbjct: 269 ALKSGKLLSAGLDV-HEFEPNVSKELIEMKHVTLTTHIGGVAIETFHEFERLTMTNIDRF 327
Query: 262 TFHNKPMI 269
KP++
Sbjct: 328 LLQGKPLL 335
>pdb|2W2K|A Chain A, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis
D-Mandelate Dehydrogenase At 1.8a.
pdb|2W2L|A Chain A, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a.
pdb|2W2L|B Chain B, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a.
pdb|2W2L|C Chain C, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a
Length = 348
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 64/119 (53%), Gaps = 8/119 (6%)
Query: 50 CGRIGLSVLEKLIPYKVSKFL------YTSRSKKPEADKR-GAEHTN-IDDLCKQSDFII 101
G +GL ++K I K L Y E +K GAE + +++L ++SD +
Sbjct: 166 LGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVS 225
Query: 102 ITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNE 160
++ THHLI+ A +MKPG+ ++NT+RG ++ Q+ALI + +++S + +E
Sbjct: 226 VSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHE 284
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 203 VLKAKKIRGAGLDVMYXXXXXXXXXXXXXDNCVILPHIGSAQIETRQEMARITAQNIIN- 261
LK+ K+ AGLDV + + + HIG IET E R+T NI
Sbjct: 269 ALKSGKLLSAGLDV-HEFEPQVSKELIEMKHVTLTTHIGGVAIETFHEFERLTMTNIDRF 327
Query: 262 TFHNKPMI 269
KP++
Sbjct: 328 LLQGKPLL 335
>pdb|2P9G|A Chain A, Crystal Structure Of Serine Bound G336v,G337v Double
Mutant Of E.Coli Phosphoglycerate Dehydrogenase
pdb|2P9G|B Chain B, Crystal Structure Of Serine Bound G336v,G337v Double
Mutant Of E.Coli Phosphoglycerate Dehydrogenase
Length = 410
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 60/126 (47%), Gaps = 9/126 (7%)
Query: 24 RGEWKSWAPNFMCGPALQNSTVGIVGCGRIG--LSVLEKLIPYKVSKFLYTSRSKKPEAD 81
RG W A + +GI+G G IG L +L + + V + Y +K P +
Sbjct: 136 RGVWNKLAAGSFEA---RGKKLGIIGYGHIGTQLGILAESLGMYV--YFYDIENKLPLGN 190
Query: 82 KRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEA 141
+H + DL SD + + P T +++ + MKPG++LIN SRG +VD A
Sbjct: 191 ATQVQH--LSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPA 248
Query: 142 LIDFIA 147
L D +A
Sbjct: 249 LADALA 254
>pdb|2P9C|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9C|B Chain B, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|A Chain A, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|B Chain B, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|C Chain C, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|D Chain D, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2PA3|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
Length = 410
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 60/126 (47%), Gaps = 9/126 (7%)
Query: 24 RGEWKSWAPNFMCGPALQNSTVGIVGCGRIG--LSVLEKLIPYKVSKFLYTSRSKKPEAD 81
RG W A + +GI+G G IG L +L + + V + Y +K P +
Sbjct: 136 RGVWNKLAAGSFEA---RGKKLGIIGYGHIGTQLGILAESLGMYV--YFYDIENKLPLGN 190
Query: 82 KRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEA 141
+H + DL SD + + P T +++ + MKPG++LIN SRG +VD A
Sbjct: 191 ATQVQH--LSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPA 248
Query: 142 LIDFIA 147
L D +A
Sbjct: 249 LADALA 254
>pdb|3K5P|A Chain A, Crystal Structure Of Amino Acid-Binding Act: D-Isomer
Specific 2- Hydroxyacid Dehydrogenase Catalytic Domain
From Brucella Melitensis
Length = 416
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 58/129 (44%), Gaps = 2/129 (1%)
Query: 20 PVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE 79
P S W + ++ T+GIVG G IG V ++ Y + K
Sbjct: 134 PRSVSAHAGGWEKTAIGSREVRGKTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKLQY 193
Query: 80 ADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQ 139
+ + A ++D+L K SD + + + T LI A+L MK GA LIN +RG VD
Sbjct: 194 GNVKPA--ASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDL 251
Query: 140 EALIDFIAD 148
EAL + +
Sbjct: 252 EALAKVLQE 260
>pdb|1PSD|A Chain A, The Allosteric Ligand Site In The Vmax-Type Cooperative
Enzyme Phosphoglycerate Dehydrogenase
pdb|1PSD|B Chain B, The Allosteric Ligand Site In The Vmax-Type Cooperative
Enzyme Phosphoglycerate Dehydrogenase
Length = 409
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 60/126 (47%), Gaps = 9/126 (7%)
Query: 24 RGEWKSWAPNFMCGPALQNSTVGIVGCGRIG--LSVLEKLIPYKVSKFLYTSRSKKPEAD 81
RG W A + +GI+G G IG L +L + + V + Y +K P +
Sbjct: 135 RGVWNKLAAGSF---EARGKKLGIIGYGHIGTQLGILAESLGMYV--YFYDIENKLPLGN 189
Query: 82 KRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEA 141
+H + DL SD + + P T +++ + MKPG++LIN SRG +VD A
Sbjct: 190 ATQVQH--LSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPA 247
Query: 142 LIDFIA 147
L D +A
Sbjct: 248 LCDALA 253
>pdb|3OET|A Chain A, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|B Chain B, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|C Chain C, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|D Chain D, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|E Chain E, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|F Chain F, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|G Chain G, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|H Chain H, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
Length = 381
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Query: 37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHT--NIDDLC 94
G +L++ T+GIVG G +G + +L + L P RG E +D+L
Sbjct: 114 GFSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLC-----DPPRAARGDEGDFRTLDELV 168
Query: 95 KQSDFIIITSALTPD----THHLINRARLESMKPGAILINTSRGQLVDQEALI 143
+++D + + L D T HL + + +KPGAILIN RG +VD AL+
Sbjct: 169 QEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDNAALL 221
>pdb|2G76|A Chain A, Crystal Structure Of Human 3-Phosphoglycerate
Dehydrogenase
pdb|2G76|B Chain B, Crystal Structure Of Human 3-Phosphoglycerate
Dehydrogenase
Length = 335
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 3/119 (2%)
Query: 25 GEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRG 84
G+W+ FM G L T+GI+G GRIG V ++ + + Y + G
Sbjct: 151 GKWER--KKFM-GTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISPEVSASFG 207
Query: 85 AEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALI 143
+ ++++ DFI + + L P T L+N K G ++N +RG +VD+ AL+
Sbjct: 208 VQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALL 266
>pdb|4DGS|A Chain A, The Crystals Structure Of Dehydrogenase From Rhizobium
Meliloti
Length = 340
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 71/145 (48%), Gaps = 6/145 (4%)
Query: 25 GEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRG 84
G W + G + + +G++G G+IG ++ + + S Y +RS D
Sbjct: 155 GRWAA-GEQLPLGHSPKGKRIGVLGLGQIGRALASRAEAFGXS-VRYWNRSTLSGVDW-- 210
Query: 85 AEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALID 144
H + DL + SD + + A + T ++++ + L+++ P I++N +RG +VD++ALI+
Sbjct: 211 IAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDEDALIE 270
Query: 145 FI--ADIRVISISMVTNEKHLHRVF 167
+ I + + NE + F
Sbjct: 271 ALKSGTIAGAGLDVFVNEPAIRSEF 295
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 202 DVLKAKKIRGAGLDVMYXXXXXXXXXXXXXDNCVILPHIGSAQIETRQEMARITAQNIIN 261
+ LK+ I GAGLDV + N V+ PH GSA +ETR ++ N+
Sbjct: 270 EALKSGTIAGAGLDV-FVNEPAIRSEFHTTPNTVLXPHQGSATVETRXAXGKLVLANLAA 328
Query: 262 TFHNK 266
F +
Sbjct: 329 HFAGE 333
>pdb|4HY3|A Chain A, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
pdb|4HY3|B Chain B, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
pdb|4HY3|C Chain C, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
pdb|4HY3|D Chain D, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
Length = 365
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 62/124 (50%)
Query: 40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDF 99
+ S +GIVG G +G ++ L ++ ++ + ++ G E +++D+ +SDF
Sbjct: 174 IAGSEIGIVGFGDLGKALRRVLSGFRARIRVFDPWLPRSXLEENGVEPASLEDVLTKSDF 233
Query: 100 IIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTN 159
I + +A+T + + S + GA I SR +VD +AL ++ +++ S V
Sbjct: 234 IFVVAAVTSENKRFLGAEAFSSXRRGAAFILLSRADVVDFDALXAAVSSGHIVAASDVYP 293
Query: 160 EKHL 163
E+ L
Sbjct: 294 EEPL 297
>pdb|1YBA|A Chain A, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|B Chain B, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|C Chain C, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|D Chain D, The Active Form Of Phosphoglycerate Dehydrogenase
Length = 410
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 57/126 (45%), Gaps = 9/126 (7%)
Query: 24 RGEWKSWAPNFMCGPALQNSTVGIVGCGRIG--LSVLEKLIPYKVSKFLYTSRSKKPEAD 81
RG W A + +GI+G G IG L +L + + V + Y +K P +
Sbjct: 136 RGVWNKLAAGSF---EARGKKLGIIGYGHIGTQLGILAESLGXYV--YFYDIENKLPLGN 190
Query: 82 KRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEA 141
+H + DL SD + + P T + + KPG++LIN SRG +VD A
Sbjct: 191 ATQVQH--LSDLLNXSDVVSLHVPENPSTKNXXGAKEISLXKPGSLLINASRGTVVDIPA 248
Query: 142 LIDFIA 147
L D +A
Sbjct: 249 LCDALA 254
>pdb|3HG7|A Chain A, Crystal Structure Of D-Isomer Specific 2-Hydroxyacid
Dehydrogenase Family Protein From Aeromonas Salmonicida
Subsp. Salmonicida A449
Length = 324
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 5/120 (4%)
Query: 39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEAD-KRGAEHTNIDDLCKQS 97
L+ T+ I+G G IG + + + K L SRS + A + + ++ + Q+
Sbjct: 137 GLKGRTLLILGTGSIGQHIAHTGKHFGM-KVLGVSRSGRERAGFDQVYQLPALNKMLAQA 195
Query: 98 DFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMV 157
D I+ T +THHL +R E KPGAIL N RG +++ D + +R + M
Sbjct: 196 DVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEG---DLLTALRTGKLGMA 252
>pdb|1SC6|A Chain A, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|B Chain B, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|C Chain C, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|D Chain D, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
Length = 404
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 6/105 (5%)
Query: 45 VGIVGCGRIG--LSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIII 102
+GI+G G IG L +L + + V + Y +K P + +H + DL SD + +
Sbjct: 148 LGIIGYGHIGTQLGILAESLGXYV--YFYDIENKLPLGNATQVQH--LSDLLNXSDVVSL 203
Query: 103 TSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIA 147
P T + + KPG++LIN SRG +VD AL D +A
Sbjct: 204 HVPENPSTKNXXGAKEISLXKPGSLLINASRGTVVDIPALADALA 248
>pdb|2O4C|A Chain A, Crystal Structure Of D-erythronate-4-phosphate
Dehydrogenase Complexed With Nad
pdb|2O4C|B Chain B, Crystal Structure Of D-erythronate-4-phosphate
Dehydrogenase Complexed With Nad
Length = 380
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 79 EADKRGAEHTNIDDLCKQSDFIIITSALTPD----THHLINRARLESMKPGAILINTSRG 134
+A + E +++ L ++D I + + L D T HL++ RL +++PG L+N SRG
Sbjct: 150 QAREPDGEFVSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRG 209
Query: 135 QLVDQEAL 142
+VD +AL
Sbjct: 210 AVVDNQAL 217
>pdb|3EVT|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Lactobacillus Plantarum
Length = 324
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 25/46 (54%)
Query: 98 DFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALI 143
+FI+ LTP THHL + + K +LIN RG VD AL+
Sbjct: 193 NFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALM 238
>pdb|3GVX|A Chain A, Crystal Structure Of Glycerate Dehydrogenase Related
Protein From Thermoplasma Acidophilum
pdb|3GVX|B Chain B, Crystal Structure Of Glycerate Dehydrogenase Related
Protein From Thermoplasma Acidophilum
Length = 290
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%)
Query: 92 DLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIAD 148
DL +QSDF++I LT T +N L + + ++N +R +V + I F+ +
Sbjct: 169 DLFRQSDFVLIAIPLTDKTRGXVNSRLLANARKNLTIVNVARADVVSKPDXIGFLKE 225
>pdb|3ULK|A Chain A, E. Coli Ketol-Acid Reductoisomerase In Complex With Nadph
And Mg2+
pdb|3ULK|B Chain B, E. Coli Ketol-Acid Reductoisomerase In Complex With Nadph
And Mg2+
Length = 491
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 44/97 (45%), Gaps = 11/97 (11%)
Query: 40 LQNSTVGIVGCGRIGLSVLEKL------IPYKVSK-FLYTSRSKKPEADKRGAEHTNIDD 92
LQ V IVGCG GL+ + I Y + K + R+ +A + G + ++
Sbjct: 35 LQGKKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEE 94
Query: 93 LCKQSDFIIITSALTPDTHHL-INRARLESMKPGAIL 128
L Q+D +I LTPD H + R MK GA L
Sbjct: 95 LIPQADLVI---NLTPDKQHSDVVRTVQPLMKDGAAL 128
>pdb|3KBO|A Chain A, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|B Chain B, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|C Chain C, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|D Chain D, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3PP8|A Chain A, 2.1 Angstrom Crystal Structure Of Putative Oxidoreductase
(Ycdw) From Salmonella Typhimurium
Length = 315
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 50/129 (38%), Gaps = 7/129 (5%)
Query: 44 TVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIIT 103
+VGI G G +G V E L + ++ K + + Q+ +I
Sbjct: 141 SVGIXGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVESYVGREELRAFLNQTRVLINL 200
Query: 104 SALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFI-------ADIRVISISM 156
T T +IN L+ + GA ++N +RG V + L+ + A + V S
Sbjct: 201 LPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAXLDVFSQEP 260
Query: 157 VTNEKHLHR 165
+ E L R
Sbjct: 261 LPQESPLWR 269
>pdb|1YRL|A Chain A, Escherichia Coli Ketol-Acid Reductoisomerase
pdb|1YRL|B Chain B, Escherichia Coli Ketol-Acid Reductoisomerase
pdb|1YRL|C Chain C, Escherichia Coli Ketol-Acid Reductoisomerase
pdb|1YRL|D Chain D, Escherichia Coli Ketol-Acid Reductoisomerase
Length = 491
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 44/97 (45%), Gaps = 11/97 (11%)
Query: 40 LQNSTVGIVGCGRIGLSVLEKL------IPYKVSK-FLYTSRSKKPEADKRGAEHTNIDD 92
LQ V IVGCG GL+ + I Y + K + R+ +A + G + ++
Sbjct: 35 LQGKKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEE 94
Query: 93 LCKQSDFIIITSALTPDTHHL-INRARLESMKPGAIL 128
L Q+D +I LTPD H + R MK GA L
Sbjct: 95 LIPQADLVI---NLTPDKQHSDVVRTVQPLMKDGAAL 128
>pdb|3AUP|A Chain A, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|B Chain B, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|C Chain C, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|D Chain D, Crystal Structure Of Basic 7s Globulin From Soybean
Length = 403
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 41/213 (19%), Positives = 81/213 (38%), Gaps = 27/213 (12%)
Query: 29 SWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIP-YKVSKFLYTSRSKKPEADKR---G 84
S AP+F+ L +T G+ G G +S+ +L + + + T S+ P + G
Sbjct: 140 SCAPSFLVQKGLPRNTQGVAGLGHAPISLPNQLASHFGLQRQFTTCLSRYPTSKGAIIFG 199
Query: 85 AEHTNIDDLCKQS-----DFIIITSALTPDTHHLINRARLE--SMKP------------- 124
N+ Q F +T L + + +N R+ S+ P
Sbjct: 200 DAPNNMRQFQNQDIFHDLAFTPLTITLQGEYNVRVNSIRINQHSVFPLNKISSTIVGSTS 259
Query: 125 GAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFI 184
G +I+TS +V Q+++ + + + + V G F+ ++A+ +
Sbjct: 260 GGTMISTSTPHMVLQQSVYQAFTQVFA---QQLPKQAQVKSVAPFGLCFNSNKINAYPSV 316
Query: 185 HMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVM 217
++M G + S D++ + L VM
Sbjct: 317 DLVMDKPNGPVWRISGEDLMVQAQPGVTCLGVM 349
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,446,796
Number of Sequences: 62578
Number of extensions: 264541
Number of successful extensions: 854
Number of sequences better than 100.0: 63
Number of HSP's better than 100.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 718
Number of HSP's gapped (non-prelim): 101
length of query: 274
length of database: 14,973,337
effective HSP length: 97
effective length of query: 177
effective length of database: 8,903,271
effective search space: 1575878967
effective search space used: 1575878967
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)