Query psy3240
Match_columns 274
No_of_seqs 332 out of 1782
Neff 6.2
Searched_HMMs 46136
Date Fri Aug 16 19:55:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3240.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3240hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0111 SerA Phosphoglycerate 100.0 2.4E-51 5.2E-56 385.0 20.7 204 9-273 110-319 (324)
2 PRK15409 bifunctional glyoxyla 100.0 9.4E-51 2E-55 380.9 22.0 206 9-273 110-319 (323)
3 COG1052 LdhA Lactate dehydroge 100.0 1.9E-49 4E-54 372.1 21.3 207 8-273 109-322 (324)
4 PRK06487 glycerate dehydrogena 100.0 3.1E-48 6.8E-53 362.9 21.8 201 8-272 109-316 (317)
5 PRK08410 2-hydroxyacid dehydro 100.0 8E-48 1.7E-52 359.3 21.0 197 9-267 107-311 (311)
6 PRK13243 glyoxylate reductase; 100.0 1E-47 2.2E-52 361.6 21.9 205 9-273 111-322 (333)
7 PLN02306 hydroxypyruvate reduc 100.0 4.9E-47 1.1E-51 363.2 21.6 206 9-273 130-354 (386)
8 PRK06932 glycerate dehydrogena 100.0 5.5E-47 1.2E-51 354.2 20.7 197 9-267 109-314 (314)
9 PRK07574 formate dehydrogenase 100.0 6.9E-47 1.5E-51 361.9 21.3 205 9-272 158-366 (385)
10 PLN02928 oxidoreductase family 100.0 1.4E-46 3E-51 355.8 21.6 200 8-270 128-342 (347)
11 PLN03139 formate dehydrogenase 100.0 2.7E-46 5.9E-51 357.8 21.6 202 9-269 165-370 (386)
12 PRK11790 D-3-phosphoglycerate 100.0 3.8E-46 8.3E-51 359.6 20.6 202 9-274 119-327 (409)
13 PRK15469 ghrA bifunctional gly 100.0 1.1E-45 2.3E-50 345.3 20.4 200 9-274 106-308 (312)
14 KOG0069|consensus 100.0 1.1E-45 2.3E-50 345.9 20.0 206 8-274 127-336 (336)
15 TIGR01327 PGDH D-3-phosphoglyc 100.0 3E-45 6.6E-50 363.1 21.1 205 8-274 105-312 (525)
16 PF02826 2-Hacid_dh_C: D-isome 100.0 4.5E-46 9.8E-51 321.2 12.8 173 9-241 3-178 (178)
17 PRK13581 D-3-phosphoglycerate 100.0 3.6E-45 7.7E-50 362.7 20.8 204 9-274 108-313 (526)
18 KOG0068|consensus 100.0 4.6E-44 1E-48 331.4 16.1 202 9-272 114-319 (406)
19 PRK06436 glycerate dehydrogena 100.0 1.1E-42 2.3E-47 323.9 20.9 193 9-273 92-289 (303)
20 PRK12480 D-lactate dehydrogena 100.0 9E-43 1.9E-47 327.8 20.1 202 9-273 113-330 (330)
21 PRK08605 D-lactate dehydrogena 100.0 2E-41 4.3E-46 318.8 21.6 203 9-273 113-332 (332)
22 PRK15438 erythronate-4-phospha 100.0 3.4E-39 7.3E-44 308.1 18.5 167 37-267 111-281 (378)
23 PRK00257 erythronate-4-phospha 100.0 5.6E-39 1.2E-43 307.1 18.8 169 37-268 111-283 (381)
24 KOG0067|consensus 99.8 4.6E-19 9.9E-24 166.8 8.5 194 10-268 140-341 (435)
25 PTZ00075 Adenosylhomocysteinas 99.7 7.3E-17 1.6E-21 158.0 13.2 103 37-146 249-352 (476)
26 PLN02494 adenosylhomocysteinas 99.6 1.8E-15 3.9E-20 148.0 11.0 104 37-144 249-354 (477)
27 PF03446 NAD_binding_2: NAD bi 99.6 8.4E-16 1.8E-20 130.6 7.5 115 43-157 2-119 (163)
28 COG2084 MmsB 3-hydroxyisobutyr 99.6 3.8E-15 8.2E-20 137.9 10.0 114 43-156 1-119 (286)
29 PRK13403 ketol-acid reductoiso 99.6 4.9E-15 1.1E-19 139.1 9.7 92 38-130 12-104 (335)
30 TIGR00936 ahcY adenosylhomocys 99.6 2E-14 4.3E-19 139.0 12.4 105 38-146 191-297 (406)
31 PLN02712 arogenate dehydrogena 99.5 9.9E-14 2.1E-18 141.8 12.6 138 26-193 353-492 (667)
32 PLN02256 arogenate dehydrogena 99.5 6.9E-13 1.5E-17 124.0 14.6 123 40-192 34-158 (304)
33 PRK12490 6-phosphogluconate de 99.5 2.4E-13 5.3E-18 126.1 10.7 112 43-155 1-117 (299)
34 COG0287 TyrA Prephenate dehydr 99.5 1.1E-12 2.4E-17 121.3 14.7 139 42-243 3-148 (279)
35 PRK15461 NADH-dependent gamma- 99.5 2.7E-13 5.9E-18 125.7 10.0 114 43-156 2-119 (296)
36 PRK07417 arogenate dehydrogena 99.5 4.8E-13 1E-17 122.9 11.2 140 43-242 1-143 (279)
37 PRK11559 garR tartronate semia 99.4 3.5E-13 7.6E-18 124.1 10.0 114 43-156 3-120 (296)
38 TIGR01505 tartro_sem_red 2-hyd 99.4 3E-13 6.4E-18 124.5 9.4 112 44-155 1-116 (291)
39 PRK06545 prephenate dehydrogen 99.4 1.5E-12 3.2E-17 123.9 13.7 143 43-242 1-150 (359)
40 PRK09599 6-phosphogluconate de 99.4 9.6E-13 2.1E-17 122.1 10.8 113 43-156 1-118 (301)
41 PRK15059 tartronate semialdehy 99.4 1.7E-12 3.8E-17 120.4 10.3 112 44-155 2-116 (292)
42 PLN02350 phosphogluconate dehy 99.4 1.8E-12 3.9E-17 128.3 9.9 112 44-156 8-131 (493)
43 PRK08818 prephenate dehydrogen 99.4 9.4E-12 2E-16 119.3 13.7 110 40-191 2-115 (370)
44 PRK07502 cyclohexadienyl dehyd 99.3 1.9E-11 4.1E-16 113.5 14.1 145 41-242 5-155 (307)
45 PF00670 AdoHcyase_NAD: S-aden 99.3 3.4E-12 7.5E-17 109.2 8.3 103 38-144 19-123 (162)
46 PRK08655 prephenate dehydrogen 99.3 2.8E-11 6E-16 118.3 15.4 118 43-191 1-122 (437)
47 TIGR02853 spore_dpaA dipicolin 99.3 5.1E-12 1.1E-16 117.2 9.3 98 37-139 146-248 (287)
48 KOG0409|consensus 99.3 7.4E-12 1.6E-16 115.9 9.2 117 40-156 33-154 (327)
49 PLN02712 arogenate dehydrogena 99.3 1E-11 2.2E-16 127.1 11.2 124 38-191 48-173 (667)
50 PRK05476 S-adenosyl-L-homocyst 99.3 1.5E-11 3.3E-16 119.6 11.8 103 38-144 208-312 (425)
51 TIGR00872 gnd_rel 6-phosphoglu 99.3 1.8E-11 4E-16 113.6 10.9 113 43-157 1-118 (298)
52 PRK05479 ketol-acid reductoiso 99.3 1.3E-11 2.8E-16 116.6 9.5 95 38-134 13-109 (330)
53 PLN02858 fructose-bisphosphate 99.3 1.4E-11 3.1E-16 134.3 10.6 116 41-156 3-124 (1378)
54 TIGR01692 HIBADH 3-hydroxyisob 99.3 1.4E-11 3E-16 113.6 8.8 110 47-156 1-114 (288)
55 PTZ00142 6-phosphogluconate de 99.3 2.3E-11 5.1E-16 119.9 10.1 115 43-158 2-127 (470)
56 PRK08507 prephenate dehydrogen 99.2 1.2E-10 2.5E-15 106.7 12.6 89 43-135 1-94 (275)
57 PLN02858 fructose-bisphosphate 99.2 4E-11 8.7E-16 130.9 10.6 115 42-156 324-444 (1378)
58 cd00401 AdoHcyase S-adenosyl-L 99.2 1E-10 2.2E-15 113.6 12.2 104 37-144 197-302 (413)
59 TIGR00873 gnd 6-phosphoglucona 99.2 6E-11 1.3E-15 117.0 10.1 114 44-158 1-124 (467)
60 TIGR00518 alaDH alanine dehydr 99.2 4.5E-11 9.7E-16 114.6 8.2 131 39-191 164-304 (370)
61 PRK14806 bifunctional cyclohex 99.2 2.6E-10 5.6E-15 117.5 14.0 144 43-242 4-153 (735)
62 PRK11199 tyrA bifunctional cho 99.2 2.7E-10 5.9E-15 109.2 13.2 106 41-191 97-203 (374)
63 PF07991 IlvN: Acetohydroxy ac 99.1 1.5E-10 3.2E-15 99.1 7.4 94 40-135 2-97 (165)
64 PRK08306 dipicolinate synthase 99.1 3.5E-10 7.5E-15 105.4 9.9 92 37-133 147-242 (296)
65 TIGR00465 ilvC ketol-acid redu 99.1 6.2E-10 1.4E-14 104.6 9.9 96 40-137 1-98 (314)
66 COG0686 Ald Alanine dehydrogen 99.1 2.4E-10 5.2E-15 106.5 6.3 132 38-191 164-305 (371)
67 cd01075 NAD_bind_Leu_Phe_Val_D 99.0 1.7E-09 3.6E-14 95.4 10.1 117 37-160 23-143 (200)
68 PLN02545 3-hydroxybutyryl-CoA 99.0 1.4E-09 3.1E-14 100.3 9.4 96 43-138 5-126 (295)
69 PRK05225 ketol-acid reductoiso 99.0 7.2E-10 1.6E-14 108.3 7.0 90 38-129 32-128 (487)
70 PF02153 PDH: Prephenate dehyd 99.0 5E-09 1.1E-13 95.6 12.0 129 57-242 1-134 (258)
71 PRK09260 3-hydroxybutyryl-CoA 99.0 2.5E-09 5.4E-14 98.5 9.2 96 43-138 2-124 (288)
72 cd01065 NAD_bind_Shikimate_DH 98.9 5.9E-09 1.3E-13 86.5 9.7 113 38-155 15-137 (155)
73 PRK08293 3-hydroxybutyryl-CoA 98.9 2.4E-08 5.3E-13 92.0 13.4 100 43-144 4-130 (287)
74 COG1023 Gnd Predicted 6-phosph 98.9 1.2E-08 2.6E-13 92.4 9.6 115 43-158 1-120 (300)
75 PRK07066 3-hydroxybutyryl-CoA 98.8 1.9E-08 4.1E-13 95.0 10.7 100 43-144 8-129 (321)
76 COG0499 SAM1 S-adenosylhomocys 98.8 1E-08 2.2E-13 97.3 8.6 102 39-144 206-309 (420)
77 PF03807 F420_oxidored: NADP o 98.8 6.6E-09 1.4E-13 79.9 6.0 88 44-134 1-96 (96)
78 PRK14619 NAD(P)H-dependent gly 98.8 1.5E-08 3.3E-13 94.4 9.5 83 41-136 3-86 (308)
79 PRK07530 3-hydroxybutyryl-CoA 98.8 1.9E-08 4.1E-13 92.8 9.5 98 43-144 5-129 (292)
80 PLN02688 pyrroline-5-carboxyla 98.8 1.8E-08 4E-13 91.3 9.2 98 43-144 1-105 (266)
81 PRK11064 wecC UDP-N-acetyl-D-m 98.8 3.9E-08 8.5E-13 95.6 11.8 108 43-150 4-137 (415)
82 PF01262 AlaDh_PNT_C: Alanine 98.8 4.3E-09 9.3E-14 90.0 4.5 124 38-183 16-168 (168)
83 TIGR03026 NDP-sugDHase nucleot 98.8 8.4E-08 1.8E-12 92.8 12.9 102 43-144 1-132 (411)
84 PRK14194 bifunctional 5,10-met 98.8 2.6E-08 5.5E-13 93.2 9.0 79 37-134 154-233 (301)
85 PRK09287 6-phosphogluconate de 98.8 2.3E-08 5E-13 98.5 8.3 105 53-158 1-115 (459)
86 PRK15182 Vi polysaccharide bio 98.7 7.4E-08 1.6E-12 94.1 10.3 112 43-155 7-145 (425)
87 PRK14618 NAD(P)H-dependent gly 98.7 6.3E-08 1.4E-12 90.7 8.6 101 42-148 4-123 (328)
88 PRK07819 3-hydroxybutyryl-CoA 98.7 1.2E-07 2.7E-12 87.7 10.2 99 43-142 6-131 (286)
89 PRK06129 3-hydroxyacyl-CoA deh 98.7 1.4E-07 3E-12 87.9 10.6 117 43-190 3-145 (308)
90 PRK12491 pyrroline-5-carboxyla 98.7 6.7E-08 1.5E-12 89.0 7.9 101 42-146 2-109 (272)
91 PRK08268 3-hydroxy-acyl-CoA de 98.6 9.3E-08 2E-12 95.3 9.2 100 43-146 8-134 (507)
92 PRK14188 bifunctional 5,10-met 98.6 1.2E-07 2.5E-12 88.7 8.9 80 37-135 153-233 (296)
93 COG0059 IlvC Ketol-acid reduct 98.6 1E-07 2.2E-12 88.8 8.3 89 39-128 15-105 (338)
94 PRK15057 UDP-glucose 6-dehydro 98.6 2.2E-07 4.9E-12 89.7 11.0 107 43-151 1-136 (388)
95 PRK13302 putative L-aspartate 98.6 1.8E-07 3.9E-12 86.2 9.8 107 41-152 5-118 (271)
96 PRK07679 pyrroline-5-carboxyla 98.6 1.5E-07 3.2E-12 86.5 9.0 99 41-144 2-109 (279)
97 PRK06130 3-hydroxybutyryl-CoA 98.6 1.7E-07 3.6E-12 87.1 8.9 100 43-144 5-125 (311)
98 PRK05808 3-hydroxybutyryl-CoA 98.6 1.8E-07 3.9E-12 85.8 9.1 99 43-144 4-128 (282)
99 PRK14189 bifunctional 5,10-met 98.6 1.7E-07 3.7E-12 87.1 8.4 80 37-135 153-233 (285)
100 PRK07531 bifunctional 3-hydrox 98.6 2.1E-07 4.6E-12 92.4 9.6 104 43-148 5-130 (495)
101 KOG1370|consensus 98.6 1.5E-07 3.2E-12 87.9 7.7 93 40-136 212-305 (434)
102 PF10727 Rossmann-like: Rossma 98.6 7.2E-08 1.6E-12 79.6 5.1 91 40-132 8-104 (127)
103 PRK06035 3-hydroxyacyl-CoA deh 98.6 3.4E-07 7.4E-12 84.5 10.0 99 43-144 4-131 (291)
104 PRK00094 gpsA NAD(P)H-dependen 98.6 1.8E-07 3.9E-12 86.6 8.1 91 43-135 2-108 (325)
105 PRK06476 pyrroline-5-carboxyla 98.5 2.6E-07 5.6E-12 83.8 8.0 97 44-146 2-105 (258)
106 COG2085 Predicted dinucleotide 98.5 3.7E-07 8E-12 81.2 8.7 88 43-133 2-94 (211)
107 PRK14179 bifunctional 5,10-met 98.5 3.5E-07 7.5E-12 85.0 8.5 78 37-133 153-231 (284)
108 TIGR01724 hmd_rel H2-forming N 98.5 6.6E-07 1.4E-11 84.3 10.4 87 54-141 32-125 (341)
109 PRK13304 L-aspartate dehydroge 98.5 4.7E-07 1E-11 83.0 8.9 93 43-140 2-100 (265)
110 PRK07680 late competence prote 98.5 5.1E-07 1.1E-11 82.6 8.7 102 43-148 1-110 (273)
111 PF01488 Shikimate_DH: Shikima 98.5 2.2E-07 4.8E-12 76.8 5.4 99 38-139 8-116 (135)
112 TIGR02279 PaaC-3OHAcCoADH 3-hy 98.5 5.9E-07 1.3E-11 89.6 9.3 94 42-136 5-125 (503)
113 cd01080 NAD_bind_m-THF_DH_Cycl 98.4 1.3E-06 2.8E-11 75.3 9.2 82 38-138 40-122 (168)
114 PRK14175 bifunctional 5,10-met 98.4 1.2E-06 2.7E-11 81.4 9.0 79 37-134 153-232 (286)
115 TIGR00561 pntA NAD(P) transhyd 98.3 2E-06 4.3E-11 85.9 9.1 94 39-133 161-285 (511)
116 cd05213 NAD_bind_Glutamyl_tRNA 98.3 4.3E-06 9.2E-11 78.3 9.6 98 40-139 176-280 (311)
117 KOG2380|consensus 98.3 2.4E-06 5.2E-11 81.0 7.8 105 42-148 52-159 (480)
118 PRK12557 H(2)-dependent methyl 98.3 5.8E-06 1.3E-10 78.8 10.4 92 54-146 32-131 (342)
119 PRK10792 bifunctional 5,10-met 98.3 6.8E-06 1.5E-10 76.5 10.3 77 37-132 154-231 (285)
120 PF02737 3HCDH_N: 3-hydroxyacy 98.2 1.7E-06 3.7E-11 75.0 5.4 98 44-144 1-124 (180)
121 PF01210 NAD_Gly3P_dh_N: NAD-d 98.2 3E-06 6.6E-11 71.6 6.7 90 44-135 1-106 (157)
122 PRK06444 prephenate dehydrogen 98.2 3.6E-06 7.8E-11 74.4 7.2 62 43-136 1-63 (197)
123 TIGR01035 hemA glutamyl-tRNA r 98.2 3.2E-06 6.8E-11 82.4 7.4 98 39-139 177-284 (417)
124 PF02882 THF_DHG_CYH_C: Tetrah 98.2 5E-06 1.1E-10 71.3 7.3 81 37-136 31-112 (160)
125 PRK06928 pyrroline-5-carboxyla 98.2 7.6E-06 1.6E-10 75.3 8.7 101 43-147 2-111 (277)
126 PRK14192 bifunctional 5,10-met 98.2 9.6E-06 2.1E-10 75.4 9.3 79 37-134 154-233 (283)
127 PTZ00431 pyrroline carboxylate 98.2 1E-05 2.2E-10 73.8 9.3 87 41-133 2-92 (260)
128 PRK11880 pyrroline-5-carboxyla 98.2 6.3E-06 1.4E-10 74.7 7.8 96 43-144 3-104 (267)
129 PRK00045 hemA glutamyl-tRNA re 98.1 5E-06 1.1E-10 81.0 7.4 93 39-134 179-282 (423)
130 cd05191 NAD_bind_amino_acid_DH 98.1 1.9E-05 4.1E-10 60.2 9.1 68 38-132 19-86 (86)
131 cd05311 NAD_bind_2_malic_enz N 98.1 4.1E-05 8.8E-10 68.8 12.7 91 37-132 20-128 (226)
132 PRK14176 bifunctional 5,10-met 98.1 9.1E-06 2E-10 75.7 8.7 78 37-133 159-237 (287)
133 PRK00258 aroE shikimate 5-dehy 98.1 5.5E-06 1.2E-10 76.3 7.2 117 37-155 118-242 (278)
134 cd05212 NAD_bind_m-THF_DH_Cycl 98.1 2.3E-05 5E-10 65.7 10.3 80 37-135 23-103 (140)
135 PRK14178 bifunctional 5,10-met 98.1 8.1E-06 1.7E-10 75.8 8.2 79 37-134 147-226 (279)
136 PRK05472 redox-sensing transcr 98.1 3.7E-06 8.1E-11 74.5 5.5 108 41-148 83-201 (213)
137 PRK06141 ornithine cyclodeamin 98.1 7.8E-06 1.7E-10 76.7 7.9 110 40-156 123-242 (314)
138 PRK14191 bifunctional 5,10-met 98.1 8.9E-06 1.9E-10 75.7 8.1 79 37-134 152-231 (285)
139 PRK07634 pyrroline-5-carboxyla 98.1 1.4E-05 3.1E-10 71.3 8.9 99 41-144 3-109 (245)
140 PRK08229 2-dehydropantoate 2-r 98.1 1E-05 2.2E-10 75.9 8.2 102 43-148 3-122 (341)
141 TIGR00507 aroE shikimate 5-deh 98.1 1.5E-05 3.3E-10 73.0 9.1 113 38-155 113-235 (270)
142 TIGR01915 npdG NADPH-dependent 98.1 1.1E-05 2.4E-10 71.6 7.7 90 43-135 1-104 (219)
143 PLN00203 glutamyl-tRNA reducta 98.1 6.9E-06 1.5E-10 82.3 6.9 94 39-135 263-372 (519)
144 PRK09424 pntA NAD(P) transhydr 98.1 1.1E-05 2.3E-10 80.7 8.0 95 39-133 162-286 (509)
145 cd01079 NAD_bind_m-THF_DH NAD 98.0 3.9E-05 8.5E-10 67.8 9.8 95 37-138 57-162 (197)
146 PRK14183 bifunctional 5,10-met 98.0 2.1E-05 4.5E-10 73.1 8.3 78 37-133 152-230 (281)
147 cd01076 NAD_bind_1_Glu_DH NAD( 98.0 4.6E-05 9.9E-10 68.7 9.7 113 38-158 27-161 (227)
148 PRK14170 bifunctional 5,10-met 98.0 4.2E-05 9.1E-10 71.2 9.6 81 36-135 151-232 (284)
149 COG0373 HemA Glutamyl-tRNA red 98.0 1.9E-05 4.2E-10 76.9 7.6 92 39-133 175-275 (414)
150 PRK09310 aroDE bifunctional 3- 98.0 4E-05 8.6E-10 76.1 9.8 107 37-155 327-437 (477)
151 PRK14190 bifunctional 5,10-met 98.0 4.3E-05 9.3E-10 71.2 9.4 80 37-135 153-233 (284)
152 COG0345 ProC Pyrroline-5-carbo 98.0 2.6E-05 5.7E-10 72.0 7.9 96 43-146 2-107 (266)
153 PF03721 UDPG_MGDP_dh_N: UDP-g 98.0 2E-05 4.3E-10 68.8 6.7 101 43-143 1-131 (185)
154 PRK14171 bifunctional 5,10-met 97.9 4.8E-05 1E-09 70.9 9.4 89 37-144 154-251 (288)
155 PRK14173 bifunctional 5,10-met 97.9 4.3E-05 9.4E-10 71.2 8.6 80 37-135 150-230 (287)
156 PRK13940 glutamyl-tRNA reducta 97.9 3.4E-05 7.3E-10 75.4 8.2 92 38-134 177-275 (414)
157 PRK06522 2-dehydropantoate 2-r 97.9 6.6E-05 1.4E-09 68.7 9.7 101 43-147 1-114 (304)
158 PRK14177 bifunctional 5,10-met 97.9 4.8E-05 1E-09 70.8 8.6 78 37-133 154-232 (284)
159 PRK14169 bifunctional 5,10-met 97.9 4.9E-05 1.1E-09 70.7 8.5 78 37-133 151-229 (282)
160 PRK14172 bifunctional 5,10-met 97.9 7.3E-05 1.6E-09 69.4 9.6 78 37-133 153-231 (278)
161 cd01078 NAD_bind_H4MPT_DH NADP 97.9 4.7E-05 1E-09 66.0 7.9 100 37-140 23-137 (194)
162 cd05211 NAD_bind_Glu_Leu_Phe_V 97.9 0.00011 2.3E-09 65.9 10.4 107 38-152 19-145 (217)
163 PRK14186 bifunctional 5,10-met 97.9 5.2E-05 1.1E-09 71.0 8.6 80 37-135 153-233 (297)
164 TIGR01546 GAPDH-II_archae glyc 97.9 4.5E-05 9.8E-10 72.5 8.2 86 45-133 1-109 (333)
165 PLN02353 probable UDP-glucose 97.9 0.00024 5.2E-09 70.6 13.5 105 43-147 2-142 (473)
166 PLN02516 methylenetetrahydrofo 97.9 6.8E-05 1.5E-09 70.3 9.0 78 37-133 162-240 (299)
167 COG0190 FolD 5,10-methylene-te 97.9 3.9E-05 8.5E-10 71.1 7.2 78 37-133 151-229 (283)
168 PRK14166 bifunctional 5,10-met 97.9 6.1E-05 1.3E-09 70.1 8.5 78 37-133 152-230 (282)
169 PRK12921 2-dehydropantoate 2-r 97.8 7.8E-05 1.7E-09 68.5 8.8 101 43-147 1-116 (305)
170 PRK14187 bifunctional 5,10-met 97.8 7E-05 1.5E-09 70.0 8.5 78 37-133 155-233 (294)
171 PRK14182 bifunctional 5,10-met 97.8 7.2E-05 1.6E-09 69.6 8.5 79 37-134 152-231 (282)
172 PLN02616 tetrahydrofolate dehy 97.8 6.3E-05 1.4E-09 72.0 8.3 78 37-133 226-304 (364)
173 PRK14180 bifunctional 5,10-met 97.8 7.8E-05 1.7E-09 69.4 8.6 78 37-133 153-231 (282)
174 cd05313 NAD_bind_2_Glu_DH NAD( 97.8 0.0001 2.3E-09 67.6 9.3 115 37-158 33-179 (254)
175 PRK14193 bifunctional 5,10-met 97.8 8.9E-05 1.9E-09 69.0 8.6 80 37-135 153-235 (284)
176 PLN02897 tetrahydrofolate dehy 97.8 8.1E-05 1.8E-09 70.9 8.3 78 37-133 209-287 (345)
177 COG0677 WecC UDP-N-acetyl-D-ma 97.8 0.00042 9.1E-09 67.1 13.2 105 43-148 10-144 (436)
178 PRK00676 hemA glutamyl-tRNA re 97.8 9.7E-05 2.1E-09 70.4 8.5 98 38-138 170-267 (338)
179 PRK14982 acyl-ACP reductase; P 97.8 0.0001 2.2E-09 70.3 8.6 98 36-139 149-253 (340)
180 COG1250 FadB 3-hydroxyacyl-CoA 97.8 0.00016 3.4E-09 68.1 9.6 94 42-136 3-123 (307)
181 PLN02819 lysine-ketoglutarate 97.8 3.7E-05 8E-10 82.4 6.0 128 39-191 200-389 (1042)
182 PRK14181 bifunctional 5,10-met 97.7 0.00012 2.7E-09 68.2 8.6 79 37-134 148-231 (287)
183 COG0362 Gnd 6-phosphogluconate 97.7 0.00017 3.6E-09 69.8 9.7 116 42-158 3-128 (473)
184 PRK07340 ornithine cyclodeamin 97.7 9.4E-05 2E-09 69.2 7.9 90 40-136 123-221 (304)
185 PRK14031 glutamate dehydrogena 97.7 0.00017 3.6E-09 71.1 9.9 110 37-153 223-362 (444)
186 TIGR02992 ectoine_eutC ectoine 97.7 0.00035 7.5E-09 66.0 11.1 88 41-134 128-226 (326)
187 PRK14168 bifunctional 5,10-met 97.7 0.00014 3.1E-09 68.1 8.4 81 36-135 155-240 (297)
188 TIGR02371 ala_DH_arch alanine 97.7 0.00014 3E-09 68.7 8.3 89 42-136 128-226 (325)
189 PRK14185 bifunctional 5,10-met 97.7 0.00016 3.5E-09 67.6 8.6 78 37-133 152-234 (293)
190 PRK14167 bifunctional 5,10-met 97.7 0.00016 3.5E-09 67.7 8.6 78 37-133 152-234 (297)
191 TIGR02437 FadB fatty oxidation 97.7 0.00014 2.9E-09 75.7 8.9 98 43-144 314-438 (714)
192 PRK09414 glutamate dehydrogena 97.7 0.00018 4E-09 70.8 9.3 111 37-154 227-364 (445)
193 PRK14184 bifunctional 5,10-met 97.7 0.00015 3.3E-09 67.6 8.3 77 37-132 152-233 (286)
194 TIGR02440 FadJ fatty oxidation 97.7 0.00014 3.1E-09 75.3 8.9 90 43-133 305-422 (699)
195 PRK11730 fadB multifunctional 97.7 0.00016 3.4E-09 75.2 8.8 98 43-144 314-438 (715)
196 PRK14174 bifunctional 5,10-met 97.7 0.00021 4.5E-09 66.9 8.7 78 37-133 154-236 (295)
197 PRK12549 shikimate 5-dehydroge 97.6 0.00024 5.2E-09 65.9 9.0 113 38-155 123-248 (284)
198 PRK06046 alanine dehydrogenase 97.6 0.00041 8.9E-09 65.5 10.4 88 42-136 129-227 (326)
199 TIGR02441 fa_ox_alpha_mit fatt 97.6 0.00014 3.1E-09 75.7 7.9 98 43-144 336-460 (737)
200 PF13241 NAD_binding_7: Putati 97.6 0.00013 2.8E-09 57.6 5.7 86 39-132 4-91 (103)
201 PRK06249 2-dehydropantoate 2-r 97.6 0.0024 5.3E-08 59.5 15.2 100 42-145 5-118 (313)
202 PF00389 2-Hacid_dh: D-isomer 97.6 0.00081 1.7E-08 54.9 10.1 32 242-273 102-133 (133)
203 PRK12439 NAD(P)H-dependent gly 97.6 0.0002 4.3E-09 67.9 7.4 90 43-135 8-114 (341)
204 PRK11154 fadJ multifunctional 97.6 0.00033 7.1E-09 72.7 9.5 99 43-144 310-435 (708)
205 PRK08618 ornithine cyclodeamin 97.5 0.00038 8.3E-09 65.6 8.7 88 41-135 126-224 (325)
206 PF01408 GFO_IDH_MocA: Oxidore 97.5 0.0012 2.5E-08 52.2 10.1 104 44-151 2-114 (120)
207 TIGR02354 thiF_fam2 thiamine b 97.5 0.00042 9.2E-09 61.2 7.9 94 38-132 17-145 (200)
208 TIGR01921 DAP-DH diaminopimela 97.5 0.00044 9.4E-09 65.6 8.2 109 42-155 3-118 (324)
209 COG0334 GdhA Glutamate dehydro 97.4 0.0007 1.5E-08 65.8 9.3 95 37-137 202-317 (411)
210 smart00859 Semialdhyde_dh Semi 97.4 0.00052 1.1E-08 55.1 7.1 88 44-133 1-100 (122)
211 PRK14620 NAD(P)H-dependent gly 97.4 0.00055 1.2E-08 64.0 8.1 91 43-135 1-109 (326)
212 PRK06823 ornithine cyclodeamin 97.4 0.00071 1.5E-08 63.8 8.8 89 42-136 128-226 (315)
213 COG1064 AdhP Zn-dependent alco 97.4 0.00042 9.2E-09 66.0 7.2 88 41-134 166-261 (339)
214 TIGR01809 Shik-DH-AROM shikima 97.4 0.00082 1.8E-08 62.3 8.9 111 39-155 122-252 (282)
215 TIGR03376 glycerol3P_DH glycer 97.4 0.00055 1.2E-08 65.3 8.0 90 44-135 1-119 (342)
216 COG2423 Predicted ornithine cy 97.4 0.00066 1.4E-08 64.6 8.2 87 42-134 130-227 (330)
217 PTZ00345 glycerol-3-phosphate 97.3 0.00071 1.5E-08 65.1 8.2 93 42-136 11-133 (365)
218 COG0240 GpsA Glycerol-3-phosph 97.3 0.00078 1.7E-08 63.9 8.2 94 43-138 2-111 (329)
219 PRK13303 L-aspartate dehydroge 97.3 0.0012 2.7E-08 60.5 9.3 101 43-148 2-111 (265)
220 PRK14030 glutamate dehydrogena 97.3 0.001 2.2E-08 65.6 9.2 110 37-153 223-363 (445)
221 PRK06718 precorrin-2 dehydroge 97.3 0.00061 1.3E-08 60.2 6.7 72 38-109 6-83 (202)
222 PRK06407 ornithine cyclodeamin 97.3 0.001 2.2E-08 62.4 8.5 90 41-136 116-216 (301)
223 PRK08291 ectoine utilization p 97.3 0.00098 2.1E-08 63.0 8.4 87 41-133 131-228 (330)
224 PLN02477 glutamate dehydrogena 97.3 0.0013 2.8E-08 64.3 9.4 115 36-158 200-336 (410)
225 PRK11861 bifunctional prephena 97.3 0.00058 1.2E-08 70.5 7.4 87 100-242 1-87 (673)
226 PF02423 OCD_Mu_crystall: Orni 97.3 0.00048 1E-08 64.8 6.2 91 42-136 128-228 (313)
227 TIGR01470 cysG_Nterm siroheme 97.3 0.00066 1.4E-08 60.2 6.4 89 39-132 6-100 (205)
228 PTZ00079 NADP-specific glutama 97.2 0.0016 3.5E-08 64.3 9.3 111 37-153 232-372 (454)
229 COG1712 Predicted dinucleotide 97.2 0.002 4.4E-08 58.3 9.1 95 43-142 1-101 (255)
230 PRK12749 quinate/shikimate deh 97.2 0.0012 2.7E-08 61.4 8.1 115 37-155 119-254 (288)
231 PRK13301 putative L-aspartate 97.2 0.0021 4.5E-08 59.4 9.2 94 42-140 2-101 (267)
232 PF00208 ELFV_dehydrog: Glutam 97.2 0.00091 2E-08 61.0 6.6 114 39-159 29-173 (244)
233 PRK06199 ornithine cyclodeamin 97.1 0.0012 2.6E-08 63.8 7.5 91 42-135 155-262 (379)
234 PF13380 CoA_binding_2: CoA bi 97.1 0.0016 3.4E-08 52.7 6.7 101 43-154 1-106 (116)
235 COG0169 AroE Shikimate 5-dehyd 97.1 0.0022 4.7E-08 59.8 8.4 113 38-155 122-247 (283)
236 PF01118 Semialdhyde_dh: Semia 97.1 0.0013 2.8E-08 53.0 6.1 85 44-133 1-98 (121)
237 PRK12548 shikimate 5-dehydroge 97.1 0.0024 5.2E-08 59.3 8.2 114 38-155 122-257 (289)
238 PF02558 ApbA: Ketopantoate re 97.0 0.00075 1.6E-08 55.7 4.3 96 45-144 1-112 (151)
239 TIGR01850 argC N-acetyl-gamma- 97.0 0.0026 5.7E-08 60.6 8.2 91 43-138 1-105 (346)
240 PTZ00117 malate dehydrogenase; 97.0 0.0039 8.6E-08 58.7 9.1 93 40-133 3-123 (319)
241 PRK07589 ornithine cyclodeamin 96.9 0.0031 6.7E-08 60.4 8.1 91 42-136 129-229 (346)
242 PLN02520 bifunctional 3-dehydr 96.9 0.0033 7.1E-08 63.3 8.6 114 37-155 374-496 (529)
243 PF01113 DapB_N: Dihydrodipico 96.9 0.0054 1.2E-07 49.9 8.3 99 44-147 2-113 (124)
244 PRK01710 murD UDP-N-acetylmura 96.9 0.0075 1.6E-07 59.3 10.8 112 39-151 11-144 (458)
245 COG1004 Ugd Predicted UDP-gluc 96.9 0.016 3.4E-07 56.4 12.6 103 43-145 1-133 (414)
246 KOG2653|consensus 96.9 0.0036 7.8E-08 60.1 8.1 115 43-158 7-131 (487)
247 PRK00048 dihydrodipicolinate r 96.9 0.0065 1.4E-07 55.5 9.5 64 43-106 2-70 (257)
248 TIGR01763 MalateDH_bact malate 96.9 0.0059 1.3E-07 57.3 9.0 101 43-144 2-130 (305)
249 COG0771 MurD UDP-N-acetylmuram 96.9 0.0077 1.7E-07 59.6 10.2 131 39-220 4-156 (448)
250 PRK03369 murD UDP-N-acetylmura 96.8 0.0045 9.7E-08 61.5 8.3 116 35-150 5-143 (488)
251 PF02254 TrkA_N: TrkA-N domain 96.8 0.0088 1.9E-07 47.0 8.3 83 45-129 1-93 (116)
252 PRK14027 quinate/shikimate deh 96.8 0.0067 1.5E-07 56.4 8.7 113 38-155 123-250 (283)
253 TIGR02356 adenyl_thiF thiazole 96.8 0.0039 8.5E-08 54.9 6.8 37 38-74 17-54 (202)
254 COG1748 LYS9 Saccharopine dehy 96.7 0.0048 1E-07 59.9 7.8 102 43-151 2-117 (389)
255 cd05291 HicDH_like L-2-hydroxy 96.7 0.008 1.7E-07 56.1 8.9 96 43-140 1-123 (306)
256 COG5322 Predicted dehydrogenas 96.7 0.0027 5.9E-08 58.9 5.4 100 36-140 161-269 (351)
257 PF03720 UDPG_MGDP_dh_C: UDP-g 96.7 0.0041 8.8E-08 49.3 5.5 79 52-131 17-100 (106)
258 PRK11579 putative oxidoreducta 96.7 0.022 4.8E-07 53.7 11.5 105 43-152 5-117 (346)
259 PRK08306 dipicolinate synthase 96.6 0.014 3.1E-07 54.4 10.0 109 41-156 1-120 (296)
260 PRK08269 3-hydroxybutyryl-CoA 96.6 0.0054 1.2E-07 57.8 7.0 102 53-156 1-141 (314)
261 PRK12475 thiamine/molybdopteri 96.6 0.0052 1.1E-07 58.6 6.8 81 38-119 20-138 (338)
262 PRK00066 ldh L-lactate dehydro 96.6 0.012 2.6E-07 55.5 9.1 93 40-132 4-122 (315)
263 KOG0023|consensus 96.6 0.0047 1E-07 58.5 6.3 89 41-132 181-279 (360)
264 cd05292 LDH_2 A subgroup of L- 96.6 0.01 2.2E-07 55.6 8.5 90 43-132 1-116 (308)
265 PRK06719 precorrin-2 dehydroge 96.5 0.0059 1.3E-07 51.9 6.2 68 38-106 9-80 (157)
266 PRK09880 L-idonate 5-dehydroge 96.5 0.011 2.5E-07 55.1 8.4 89 40-133 168-267 (343)
267 PTZ00082 L-lactate dehydrogena 96.5 0.013 2.9E-07 55.3 8.6 64 40-104 4-82 (321)
268 PRK00683 murD UDP-N-acetylmura 96.5 0.0091 2E-07 57.9 7.7 67 42-108 3-71 (418)
269 PF00185 OTCace: Aspartate/orn 96.5 0.021 4.7E-07 48.5 9.1 98 41-138 1-129 (158)
270 PRK06223 malate dehydrogenase; 96.5 0.014 2.9E-07 54.3 8.5 62 43-105 3-79 (307)
271 PRK06270 homoserine dehydrogen 96.5 0.016 3.4E-07 55.2 9.1 111 43-153 3-147 (341)
272 PRK00436 argC N-acetyl-gamma-g 96.5 0.011 2.4E-07 56.2 8.1 90 43-137 3-104 (343)
273 PRK14106 murD UDP-N-acetylmura 96.4 0.035 7.5E-07 54.0 11.6 112 39-150 2-134 (450)
274 PRK04207 glyceraldehyde-3-phos 96.4 0.016 3.4E-07 55.3 8.9 65 43-107 2-89 (341)
275 TIGR01761 thiaz-red thiazoliny 96.4 0.028 6E-07 53.8 10.3 64 42-106 3-72 (343)
276 PRK09496 trkA potassium transp 96.4 0.011 2.5E-07 57.2 7.8 87 43-131 1-99 (453)
277 COG0026 PurK Phosphoribosylami 96.4 0.0083 1.8E-07 57.7 6.6 61 42-102 1-68 (375)
278 COG1648 CysG Siroheme synthase 96.4 0.011 2.4E-07 52.8 7.1 88 38-132 8-103 (210)
279 cd00650 LDH_MDH_like NAD-depen 96.4 0.014 3.1E-07 53.1 7.9 94 45-140 1-125 (263)
280 PLN02968 Probable N-acetyl-gam 96.3 0.011 2.3E-07 57.3 7.3 95 40-140 36-142 (381)
281 PRK02472 murD UDP-N-acetylmura 96.3 0.045 9.7E-07 53.2 11.5 113 39-151 2-135 (447)
282 cd00757 ThiF_MoeB_HesA_family 96.3 0.0088 1.9E-07 53.5 6.0 36 38-73 17-53 (228)
283 cd08230 glucose_DH Glucose deh 96.3 0.015 3.3E-07 54.5 7.9 89 40-133 171-270 (355)
284 COG0569 TrkA K+ transport syst 96.3 0.006 1.3E-07 54.8 4.8 66 43-108 1-78 (225)
285 PRK08300 acetaldehyde dehydrog 96.2 0.027 5.9E-07 53.0 9.1 98 42-144 4-120 (302)
286 PRK10669 putative cation:proto 96.2 0.012 2.6E-07 59.3 7.0 86 42-129 417-512 (558)
287 PRK12550 shikimate 5-dehydroge 96.2 0.028 6E-07 52.0 8.8 107 42-155 122-237 (272)
288 TIGR02964 xanthine_xdhC xanthi 96.1 0.018 3.8E-07 52.6 7.3 100 42-162 100-199 (246)
289 PRK08644 thiamine biosynthesis 96.1 0.018 3.8E-07 51.3 7.1 37 38-74 24-61 (212)
290 TIGR03366 HpnZ_proposed putati 96.1 0.019 4.1E-07 52.2 7.3 89 40-133 119-219 (280)
291 PF02629 CoA_binding: CoA bind 96.1 0.015 3.3E-07 45.1 5.7 73 42-115 3-80 (96)
292 PRK01390 murD UDP-N-acetylmura 96.1 0.04 8.8E-07 53.9 10.0 113 39-151 6-141 (460)
293 PRK00141 murD UDP-N-acetylmura 96.1 0.014 2.9E-07 57.8 6.7 114 38-151 11-148 (473)
294 PRK00856 pyrB aspartate carbam 96.1 0.029 6.3E-07 52.8 8.6 99 39-138 153-271 (305)
295 PRK03659 glutathione-regulated 96.1 0.015 3.3E-07 59.4 7.1 90 42-133 400-499 (601)
296 KOG2304|consensus 96.1 0.0023 5E-08 58.1 1.0 105 40-144 9-145 (298)
297 PRK05690 molybdopterin biosynt 96.1 0.013 2.9E-07 53.2 6.0 36 38-73 28-64 (245)
298 PRK07688 thiamine/molybdopteri 96.0 0.021 4.5E-07 54.5 7.4 37 38-74 20-57 (339)
299 COG0673 MviM Predicted dehydro 96.0 0.024 5.3E-07 52.5 7.7 106 42-151 3-119 (342)
300 PRK05708 2-dehydropantoate 2-r 96.0 0.018 4E-07 53.7 6.8 103 43-148 3-119 (305)
301 PLN02586 probable cinnamyl alc 96.0 0.041 8.8E-07 52.1 9.1 88 41-133 183-279 (360)
302 PRK02006 murD UDP-N-acetylmura 96.0 0.02 4.3E-07 56.9 7.2 113 39-151 4-148 (498)
303 TIGR00036 dapB dihydrodipicoli 95.9 0.05 1.1E-06 50.0 9.3 64 43-106 2-78 (266)
304 PLN02353 probable UDP-glucose 95.9 0.042 9.1E-07 54.7 9.3 103 38-144 320-457 (473)
305 PLN02819 lysine-ketoglutarate 95.9 0.031 6.7E-07 60.5 8.8 107 40-152 567-698 (1042)
306 TIGR03026 NDP-sugDHase nucleot 95.9 0.046 9.9E-07 53.0 9.3 90 39-131 310-409 (411)
307 PRK00421 murC UDP-N-acetylmura 95.9 0.033 7.1E-07 54.7 8.3 113 39-151 4-134 (461)
308 PRK01713 ornithine carbamoyltr 95.9 0.062 1.3E-06 51.2 9.8 96 37-132 151-275 (334)
309 TIGR02822 adh_fam_2 zinc-bindi 95.9 0.028 6.1E-07 52.5 7.4 88 41-133 165-255 (329)
310 cd01339 LDH-like_MDH L-lactate 95.8 0.02 4.3E-07 53.2 6.3 60 45-105 1-75 (300)
311 PRK03562 glutathione-regulated 95.8 0.018 4E-07 59.0 6.6 88 42-131 400-497 (621)
312 PRK01438 murD UDP-N-acetylmura 95.8 0.026 5.6E-07 55.5 7.4 114 38-151 12-149 (480)
313 TIGR02355 moeB molybdopterin s 95.8 0.026 5.6E-07 51.2 6.8 37 38-74 20-57 (240)
314 PF13460 NAD_binding_10: NADH( 95.8 0.019 4.1E-07 48.3 5.5 64 45-109 1-73 (183)
315 TIGR00670 asp_carb_tr aspartat 95.8 0.088 1.9E-06 49.5 10.4 102 39-140 147-272 (301)
316 PRK10637 cysG siroheme synthas 95.8 0.023 5E-07 56.1 6.7 75 38-112 8-88 (457)
317 cd01486 Apg7 Apg7 is an E1-lik 95.8 0.029 6.2E-07 52.9 7.0 27 44-70 1-27 (307)
318 COG1893 ApbA Ketopantoate redu 95.7 0.034 7.3E-07 52.3 7.2 86 43-131 1-100 (307)
319 PRK14851 hypothetical protein; 95.7 0.0083 1.8E-07 62.2 3.4 66 2-71 7-72 (679)
320 PTZ00325 malate dehydrogenase; 95.7 0.089 1.9E-06 49.9 10.1 97 38-134 4-127 (321)
321 TIGR03215 ac_ald_DH_ac acetald 95.7 0.064 1.4E-06 50.1 9.0 215 43-272 2-238 (285)
322 TIGR01202 bchC 2-desacetyl-2-h 95.6 0.053 1.2E-06 50.1 8.3 87 40-133 143-232 (308)
323 cd05297 GH4_alpha_glucosidase_ 95.6 0.015 3.3E-07 56.8 4.9 113 43-155 1-168 (423)
324 PRK06019 phosphoribosylaminoim 95.6 0.035 7.5E-07 53.2 7.2 61 42-102 2-69 (372)
325 PF03447 NAD_binding_3: Homose 95.6 0.041 9E-07 43.7 6.5 84 49-137 1-95 (117)
326 PRK02255 putrescine carbamoylt 95.6 0.069 1.5E-06 51.0 9.1 95 38-132 150-272 (338)
327 PF13478 XdhC_C: XdhC Rossmann 95.6 0.0092 2E-07 49.7 2.8 92 45-162 1-92 (136)
328 PRK08223 hypothetical protein; 95.6 0.05 1.1E-06 50.9 7.9 112 38-156 23-150 (287)
329 TIGR02717 AcCoA-syn-alpha acet 95.6 0.081 1.8E-06 52.2 9.8 110 39-155 4-126 (447)
330 PRK00779 ornithine carbamoyltr 95.6 0.066 1.4E-06 50.3 8.8 116 15-132 117-265 (304)
331 PF05368 NmrA: NmrA-like famil 95.6 0.025 5.4E-07 49.7 5.5 63 45-107 1-75 (233)
332 cd01483 E1_enzyme_family Super 95.5 0.044 9.6E-07 45.0 6.7 107 44-158 1-122 (143)
333 cd05312 NAD_bind_1_malic_enz N 95.5 0.29 6.3E-06 45.7 12.7 31 36-66 19-53 (279)
334 PLN02527 aspartate carbamoyltr 95.5 0.084 1.8E-06 49.7 9.1 97 39-135 148-270 (306)
335 cd00300 LDH_like L-lactate deh 95.5 0.06 1.3E-06 50.2 8.1 88 45-132 1-115 (300)
336 TIGR01087 murD UDP-N-acetylmur 95.5 0.13 2.9E-06 49.8 10.7 107 44-151 1-129 (433)
337 PRK04308 murD UDP-N-acetylmura 95.4 0.076 1.7E-06 51.8 9.0 113 39-151 2-137 (445)
338 COG4007 Predicted dehydrogenas 95.4 0.063 1.4E-06 49.8 7.7 83 54-137 33-122 (340)
339 PRK04690 murD UDP-N-acetylmura 95.4 0.062 1.3E-06 53.1 8.3 111 40-150 6-141 (468)
340 PLN02178 cinnamyl-alcohol dehy 95.4 0.074 1.6E-06 50.9 8.4 88 41-133 178-274 (375)
341 cd05188 MDR Medium chain reduc 95.3 0.11 2.4E-06 45.3 8.9 92 40-136 133-236 (271)
342 cd05293 LDH_1 A subgroup of L- 95.3 0.098 2.1E-06 49.3 9.0 95 42-139 3-125 (312)
343 PRK09496 trkA potassium transp 95.3 0.07 1.5E-06 51.7 8.2 92 39-132 228-331 (453)
344 TIGR00658 orni_carb_tr ornithi 95.3 0.1 2.3E-06 49.0 9.1 94 39-132 145-264 (304)
345 PF00056 Ldh_1_N: lactate/mala 95.3 0.018 3.9E-07 47.9 3.4 94 43-138 1-122 (141)
346 cd01487 E1_ThiF_like E1_ThiF_l 95.3 0.045 9.9E-07 47.1 6.0 32 44-75 1-33 (174)
347 PRK05597 molybdopterin biosynt 95.2 0.04 8.7E-07 52.8 6.2 83 38-121 24-142 (355)
348 PRK08328 hypothetical protein; 95.2 0.073 1.6E-06 47.9 7.5 37 38-74 23-60 (231)
349 PRK05562 precorrin-2 dehydroge 95.2 0.066 1.4E-06 48.4 7.1 89 38-131 21-115 (223)
350 TIGR02853 spore_dpaA dipicolin 95.2 0.13 2.9E-06 47.8 9.4 107 42-155 1-118 (287)
351 PRK08762 molybdopterin biosynt 95.2 0.042 9E-07 52.9 6.2 36 39-74 132-168 (376)
352 PRK14874 aspartate-semialdehyd 95.2 0.053 1.2E-06 51.4 6.9 87 42-133 1-95 (334)
353 PRK02102 ornithine carbamoyltr 95.2 0.085 1.8E-06 50.3 8.2 94 39-132 152-273 (331)
354 PRK05086 malate dehydrogenase; 95.2 0.19 4E-06 47.4 10.4 91 43-133 1-119 (312)
355 PRK05600 thiamine biosynthesis 95.2 0.051 1.1E-06 52.5 6.7 82 38-120 37-154 (370)
356 PRK11891 aspartate carbamoyltr 95.2 0.11 2.5E-06 51.1 9.2 94 39-132 238-355 (429)
357 CHL00194 ycf39 Ycf39; Provisio 95.2 0.12 2.7E-06 47.7 9.1 63 43-105 1-73 (317)
358 PRK06392 homoserine dehydrogen 95.1 0.12 2.6E-06 49.1 9.0 108 44-152 2-137 (326)
359 cd08239 THR_DH_like L-threonin 95.1 0.095 2.1E-06 48.5 8.2 89 40-133 162-263 (339)
360 COG1063 Tdh Threonine dehydrog 95.1 0.097 2.1E-06 49.8 8.3 89 41-134 168-271 (350)
361 PRK07231 fabG 3-ketoacyl-(acyl 95.1 0.074 1.6E-06 46.5 7.0 38 39-76 2-40 (251)
362 KOG2741|consensus 95.1 0.23 5E-06 47.6 10.6 112 43-158 7-131 (351)
363 PRK03806 murD UDP-N-acetylmura 95.1 0.085 1.8E-06 51.3 8.1 112 39-151 3-132 (438)
364 TIGR03201 dearomat_had 6-hydro 95.1 0.068 1.5E-06 50.0 7.2 88 41-133 166-273 (349)
365 PRK04284 ornithine carbamoyltr 95.1 0.15 3.2E-06 48.6 9.5 94 39-132 152-274 (332)
366 PRK06349 homoserine dehydrogen 95.1 0.08 1.7E-06 51.9 7.8 65 43-107 4-83 (426)
367 PLN02602 lactate dehydrogenase 95.1 0.12 2.5E-06 49.7 8.8 95 43-140 38-160 (350)
368 PF03435 Saccharop_dh: Sacchar 95.1 0.029 6.2E-07 53.7 4.6 83 45-132 1-98 (386)
369 PRK11064 wecC UDP-N-acetyl-D-m 95.0 0.067 1.5E-06 52.2 7.2 70 37-106 315-396 (415)
370 PRK03515 ornithine carbamoyltr 95.0 0.086 1.9E-06 50.4 7.7 95 38-132 152-275 (336)
371 cd08281 liver_ADH_like1 Zinc-d 95.0 0.077 1.7E-06 50.2 7.4 88 41-133 191-291 (371)
372 cd01338 MDH_choloroplast_like 95.0 0.13 2.7E-06 48.8 8.7 97 43-141 3-135 (322)
373 PRK13814 pyrB aspartate carbam 95.0 0.11 2.4E-06 49.0 8.3 94 39-132 154-264 (310)
374 cd01492 Aos1_SUMO Ubiquitin ac 95.0 0.077 1.7E-06 46.6 6.8 38 38-75 17-55 (197)
375 TIGR01381 E1_like_apg7 E1-like 95.0 0.046 9.9E-07 56.3 6.0 34 38-71 334-367 (664)
376 TIGR01851 argC_other N-acetyl- 95.0 0.13 2.8E-06 48.7 8.6 77 43-132 2-80 (310)
377 PLN02383 aspartate semialdehyd 94.9 0.064 1.4E-06 51.3 6.6 87 41-132 6-100 (344)
378 PRK01368 murD UDP-N-acetylmura 94.9 0.068 1.5E-06 52.8 7.0 110 41-151 5-131 (454)
379 cd00762 NAD_bind_malic_enz NAD 94.9 0.47 1E-05 43.7 11.9 32 36-67 19-50 (254)
380 PRK07411 hypothetical protein; 94.9 0.068 1.5E-06 51.9 6.8 86 38-124 34-155 (390)
381 PRK10206 putative oxidoreducta 94.9 0.069 1.5E-06 50.7 6.7 66 44-109 3-77 (344)
382 COG1004 Ugd Predicted UDP-gluc 94.9 0.078 1.7E-06 51.7 7.1 87 40-130 308-406 (414)
383 cd08237 ribitol-5-phosphate_DH 94.9 0.14 3E-06 47.9 8.7 90 41-133 163-257 (341)
384 PRK11863 N-acetyl-gamma-glutam 94.8 0.12 2.6E-06 48.9 7.9 77 43-132 3-81 (313)
385 PRK04148 hypothetical protein; 94.8 0.064 1.4E-06 44.8 5.4 74 40-114 15-95 (134)
386 PRK05786 fabG 3-ketoacyl-(acyl 94.7 0.091 2E-06 45.7 6.6 37 39-75 2-39 (238)
387 TIGR03451 mycoS_dep_FDH mycoth 94.7 0.12 2.6E-06 48.5 7.9 88 41-133 176-277 (358)
388 PLN02948 phosphoribosylaminoim 94.7 0.12 2.6E-06 52.7 8.3 69 38-106 18-93 (577)
389 cd01336 MDH_cytoplasmic_cytoso 94.7 0.17 3.8E-06 47.9 8.8 96 43-140 3-134 (325)
390 PRK12562 ornithine carbamoyltr 94.7 0.22 4.8E-06 47.6 9.5 95 38-132 152-275 (334)
391 PLN02514 cinnamyl-alcohol dehy 94.7 0.16 3.5E-06 47.8 8.6 89 40-133 179-276 (357)
392 PRK03803 murD UDP-N-acetylmura 94.7 0.37 8.1E-06 47.0 11.3 110 42-151 6-135 (448)
393 PLN02740 Alcohol dehydrogenase 94.6 0.14 3.1E-06 48.7 8.1 89 40-133 197-301 (381)
394 cd05283 CAD1 Cinnamyl alcohol 94.5 0.17 3.8E-06 46.8 8.3 89 41-134 169-265 (337)
395 PRK15182 Vi polysaccharide bio 94.5 0.22 4.8E-06 48.9 9.4 96 37-136 309-416 (425)
396 TIGR03316 ygeW probable carbam 94.5 0.26 5.6E-06 47.5 9.5 94 39-132 167-313 (357)
397 PLN02342 ornithine carbamoyltr 94.4 0.26 5.6E-06 47.4 9.4 94 39-132 191-307 (348)
398 PF04016 DUF364: Domain of unk 94.4 0.11 2.5E-06 43.7 6.1 100 39-144 8-107 (147)
399 PRK08040 putative semialdehyde 94.4 0.12 2.5E-06 49.5 6.9 86 41-132 3-97 (336)
400 PRK03815 murD UDP-N-acetylmura 94.4 0.39 8.5E-06 46.7 10.7 106 43-150 1-115 (401)
401 cd08296 CAD_like Cinnamyl alco 94.4 0.21 4.6E-06 46.2 8.5 89 41-134 163-261 (333)
402 PRK07878 molybdopterin biosynt 94.4 0.1 2.3E-06 50.5 6.7 82 38-120 38-155 (392)
403 TIGR01772 MDH_euk_gproteo mala 94.3 0.26 5.7E-06 46.5 9.1 94 44-139 1-121 (312)
404 TIGR01759 MalateDH-SF1 malate 94.3 0.34 7.3E-06 46.0 9.8 97 43-141 4-136 (323)
405 PRK08192 aspartate carbamoyltr 94.3 0.28 6.1E-06 46.9 9.2 96 37-132 154-274 (338)
406 COG3288 PntA NAD/NADP transhyd 94.3 0.094 2E-06 49.7 5.8 94 38-132 160-281 (356)
407 cd00704 MDH Malate dehydrogena 94.2 0.27 5.8E-06 46.6 8.9 97 43-141 1-133 (323)
408 PRK07877 hypothetical protein; 94.2 0.14 3E-06 53.7 7.4 97 38-138 103-235 (722)
409 PRK06728 aspartate-semialdehyd 94.2 0.16 3.5E-06 48.8 7.3 86 41-132 4-99 (347)
410 TIGR01161 purK phosphoribosyla 94.1 0.14 3.1E-06 48.3 6.8 60 44-103 1-67 (352)
411 PRK05442 malate dehydrogenase; 94.0 0.27 5.8E-06 46.7 8.6 99 43-143 5-139 (326)
412 TIGR02825 B4_12hDH leukotriene 93.9 0.26 5.5E-06 45.4 8.0 88 40-133 137-238 (325)
413 PRK06128 oxidoreductase; Provi 93.9 0.31 6.7E-06 44.6 8.6 35 39-73 52-87 (300)
414 PRK06182 short chain dehydroge 93.9 0.25 5.4E-06 44.3 7.7 66 41-106 2-84 (273)
415 PRK08374 homoserine dehydrogen 93.9 0.33 7.2E-06 46.2 8.9 105 43-152 3-143 (336)
416 TIGR02818 adh_III_F_hyde S-(hy 93.9 0.21 4.5E-06 47.3 7.5 88 40-132 184-287 (368)
417 cd01337 MDH_glyoxysomal_mitoch 93.8 0.26 5.6E-06 46.5 8.0 95 43-139 1-122 (310)
418 cd08293 PTGR2 Prostaglandin re 93.8 0.29 6.3E-06 45.2 8.1 86 42-133 155-255 (345)
419 PRK12742 oxidoreductase; Provi 93.7 0.35 7.6E-06 42.0 8.1 36 39-74 3-39 (237)
420 KOG4230|consensus 93.7 0.13 2.9E-06 52.4 5.9 79 37-134 157-236 (935)
421 cd08255 2-desacetyl-2-hydroxye 93.7 0.26 5.6E-06 44.0 7.3 90 40-134 96-192 (277)
422 COG0039 Mdh Malate/lactate deh 93.6 0.35 7.5E-06 45.9 8.4 67 43-109 1-84 (313)
423 PRK05678 succinyl-CoA syntheta 93.6 0.68 1.5E-05 43.4 10.3 109 42-155 8-121 (291)
424 PRK02705 murD UDP-N-acetylmura 93.6 0.69 1.5E-05 45.1 10.8 108 44-151 2-136 (459)
425 PRK15076 alpha-galactosidase; 93.6 0.13 2.7E-06 50.7 5.7 113 43-155 2-170 (431)
426 PLN02827 Alcohol dehydrogenase 93.6 0.31 6.7E-06 46.5 8.2 89 40-133 192-296 (378)
427 cd08234 threonine_DH_like L-th 93.6 0.2 4.3E-06 45.9 6.7 91 40-135 158-260 (334)
428 cd08242 MDR_like Medium chain 93.4 0.26 5.5E-06 45.0 7.0 88 40-132 154-245 (319)
429 PRK10537 voltage-gated potassi 93.4 0.46 1E-05 46.3 9.1 86 41-129 239-333 (393)
430 PF00899 ThiF: ThiF family; I 93.4 0.071 1.5E-06 43.5 3.0 109 42-158 2-125 (135)
431 PRK10083 putative oxidoreducta 93.4 0.4 8.6E-06 44.2 8.3 90 40-134 159-261 (339)
432 cd08245 CAD Cinnamyl alcohol d 93.4 0.34 7.4E-06 44.4 7.8 89 40-133 161-257 (330)
433 PLN02214 cinnamoyl-CoA reducta 93.3 0.44 9.5E-06 44.7 8.7 68 39-106 7-91 (342)
434 PRK10309 galactitol-1-phosphat 93.3 0.26 5.7E-06 45.8 7.1 88 40-132 159-260 (347)
435 COG0078 ArgF Ornithine carbamo 93.3 0.74 1.6E-05 43.5 9.9 104 40-144 151-284 (310)
436 PF05222 AlaDh_PNT_N: Alanine 93.3 0.52 1.1E-05 39.1 8.0 92 56-158 18-116 (136)
437 cd05294 LDH-like_MDH_nadp A la 93.3 0.29 6.3E-06 45.9 7.3 63 43-106 1-82 (309)
438 PLN03154 putative allyl alcoho 93.2 0.37 8.1E-06 45.3 8.0 88 40-133 157-259 (348)
439 cd05290 LDH_3 A subgroup of L- 93.2 0.18 3.8E-06 47.5 5.7 89 44-132 1-119 (307)
440 cd08301 alcohol_DH_plants Plan 93.2 0.36 7.7E-06 45.5 7.9 89 40-133 186-290 (369)
441 cd08233 butanediol_DH_like (2R 93.2 0.43 9.3E-06 44.4 8.3 88 41-133 172-273 (351)
442 cd08295 double_bond_reductase_ 93.2 0.45 9.8E-06 44.1 8.4 88 40-133 150-252 (338)
443 COG2344 AT-rich DNA-binding pr 93.2 0.15 3.2E-06 45.2 4.7 65 43-107 85-157 (211)
444 PRK14573 bifunctional D-alanyl 93.2 0.62 1.4E-05 49.2 10.3 109 43-151 5-131 (809)
445 COG0281 SfcA Malic enzyme [Ene 93.2 2.6 5.6E-05 41.6 13.7 95 35-135 192-303 (432)
446 cd01491 Ube1_repeat1 Ubiquitin 93.2 0.38 8.3E-06 45.0 7.8 38 38-75 15-53 (286)
447 PRK13376 pyrB bifunctional asp 93.1 0.49 1.1E-05 47.9 9.0 96 37-132 169-293 (525)
448 PRK07232 bifunctional malic en 93.1 1.9 4.2E-05 45.5 13.6 97 35-136 178-288 (752)
449 TIGR01758 MDH_euk_cyt malate d 93.1 0.36 7.8E-06 45.8 7.7 96 44-141 1-132 (324)
450 PRK08324 short chain dehydroge 93.1 0.32 7E-06 50.3 8.0 40 37-76 417-457 (681)
451 PRK07806 short chain dehydroge 93.1 0.45 9.7E-06 41.7 7.8 37 39-75 3-40 (248)
452 PRK04663 murD UDP-N-acetylmura 93.0 1.2 2.6E-05 43.5 11.4 112 40-151 4-135 (438)
453 PF00070 Pyr_redox: Pyridine n 93.0 0.23 5E-06 36.7 5.0 33 44-76 1-33 (80)
454 PRK12937 short chain dehydroge 93.0 0.66 1.4E-05 40.4 8.8 37 39-75 2-39 (245)
455 PRK14804 ornithine carbamoyltr 93.0 0.44 9.5E-06 45.0 8.0 67 37-103 147-225 (311)
456 cd08300 alcohol_DH_class_III c 93.0 0.3 6.5E-06 46.1 7.0 88 40-132 185-288 (368)
457 PRK05993 short chain dehydroge 93.0 0.44 9.5E-06 43.0 7.8 36 41-76 3-39 (277)
458 TIGR01296 asd_B aspartate-semi 92.9 0.18 3.9E-06 48.0 5.4 84 44-132 1-92 (339)
459 TIGR01019 sucCoAalpha succinyl 92.8 0.86 1.9E-05 42.6 9.6 111 41-155 5-119 (286)
460 cd08277 liver_alcohol_DH_like 92.7 0.37 8.1E-06 45.4 7.3 89 40-133 183-287 (365)
461 PLN00106 malate dehydrogenase 92.7 0.32 6.8E-06 46.2 6.7 93 41-133 17-136 (323)
462 cd08274 MDR9 Medium chain dehy 92.7 0.49 1.1E-05 43.6 7.8 85 41-132 177-273 (350)
463 cd08285 NADP_ADH NADP(H)-depen 92.7 0.57 1.2E-05 43.5 8.3 88 41-133 166-267 (351)
464 cd08231 MDR_TM0436_like Hypoth 92.6 0.43 9.4E-06 44.5 7.5 88 41-133 177-281 (361)
465 TIGR02819 fdhA_non_GSH formald 92.5 0.73 1.6E-05 44.4 9.1 94 40-134 184-301 (393)
466 cd08294 leukotriene_B4_DH_like 92.5 0.6 1.3E-05 42.5 8.1 88 40-133 142-242 (329)
467 cd08289 MDR_yhfp_like Yhfp put 92.5 0.57 1.2E-05 42.6 7.9 87 41-133 146-244 (326)
468 TIGR01532 E4PD_g-proteo D-eryt 92.4 0.18 3.8E-06 48.0 4.6 30 44-73 1-34 (325)
469 PRK08664 aspartate-semialdehyd 92.4 0.41 9E-06 45.6 7.1 84 43-132 4-107 (349)
470 PF00289 CPSase_L_chain: Carba 92.4 0.36 7.9E-06 38.7 5.7 100 43-155 3-104 (110)
471 PRK12862 malic enzyme; Reviewe 92.4 2.1 4.6E-05 45.3 12.9 95 35-136 186-296 (763)
472 PRK12809 putative oxidoreducta 92.4 0.62 1.4E-05 47.9 8.9 68 40-107 308-406 (639)
473 TIGR03649 ergot_EASG ergot alk 92.4 0.66 1.4E-05 41.9 8.1 63 44-108 1-79 (285)
474 COG5495 Uncharacterized conser 92.3 0.27 5.9E-06 45.0 5.4 109 36-151 4-115 (289)
475 PLN02427 UDP-apiose/xylose syn 92.3 0.44 9.6E-06 45.2 7.2 70 35-104 7-94 (386)
476 cd05284 arabinose_DH_like D-ar 92.3 0.85 1.8E-05 41.9 8.9 91 40-135 166-269 (340)
477 PRK12769 putative oxidoreducta 92.3 0.4 8.8E-06 49.3 7.4 67 40-106 325-422 (654)
478 cd08269 Zn_ADH9 Alcohol dehydr 92.3 0.71 1.5E-05 41.5 8.2 89 40-133 128-230 (312)
479 COG0604 Qor NADPH:quinone redu 92.2 0.6 1.3E-05 44.1 7.9 86 42-133 143-242 (326)
480 PRK14852 hypothetical protein; 92.2 0.94 2E-05 49.0 10.1 207 38-272 328-550 (989)
481 PRK06550 fabG 3-ketoacyl-(acyl 92.2 0.4 8.7E-06 41.6 6.3 36 39-74 2-38 (235)
482 PRK05671 aspartate-semialdehyd 92.2 0.6 1.3E-05 44.6 7.9 84 43-132 5-97 (336)
483 PLN02896 cinnamyl-alcohol dehy 92.2 0.39 8.5E-06 45.0 6.6 71 36-106 4-89 (353)
484 cd08298 CAD2 Cinnamyl alcohol 92.2 0.51 1.1E-05 43.2 7.2 89 39-132 165-256 (329)
485 PRK06153 hypothetical protein; 92.1 0.074 1.6E-06 51.8 1.6 36 38-73 172-208 (393)
486 cd08256 Zn_ADH2 Alcohol dehydr 92.0 0.76 1.7E-05 42.7 8.3 88 40-132 173-274 (350)
487 PRK08217 fabG 3-ketoacyl-(acyl 92.0 0.61 1.3E-05 40.6 7.2 37 39-75 2-39 (253)
488 PRK07200 aspartate/ornithine c 92.0 0.65 1.4E-05 45.4 8.0 65 39-103 184-269 (395)
489 PRK07523 gluconate 5-dehydroge 91.9 0.61 1.3E-05 41.2 7.2 36 39-74 7-43 (255)
490 TIGR03466 HpnA hopanoid-associ 91.9 0.37 8E-06 43.8 5.9 63 43-105 1-73 (328)
491 TIGR03736 PRTRC_ThiF PRTRC sys 91.9 0.66 1.4E-05 42.5 7.4 25 40-64 9-33 (244)
492 PLN02662 cinnamyl-alcohol dehy 91.8 0.71 1.5E-05 42.1 7.7 65 41-105 3-85 (322)
493 cd08260 Zn_ADH6 Alcohol dehydr 91.8 0.93 2E-05 41.9 8.6 90 40-134 164-266 (345)
494 cd08278 benzyl_alcohol_DH Benz 91.8 0.95 2.1E-05 42.6 8.7 89 41-134 186-287 (365)
495 TIGR03570 NeuD_NnaD sugar O-ac 91.7 0.62 1.3E-05 39.4 6.8 63 44-106 1-68 (201)
496 KOG0022|consensus 91.6 0.27 5.9E-06 46.8 4.7 48 40-87 191-240 (375)
497 PLN00141 Tic62-NAD(P)-related 91.6 0.49 1.1E-05 42.1 6.2 69 38-106 13-95 (251)
498 COG2910 Putative NADH-flavin r 91.5 1 2.2E-05 40.0 7.9 65 43-107 1-73 (211)
499 PRK12814 putative NADPH-depend 91.5 1.5 3.2E-05 45.4 10.4 68 40-107 191-289 (652)
500 PRK06598 aspartate-semialdehyd 91.4 0.5 1.1E-05 45.8 6.5 84 43-132 2-98 (369)
No 1
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=100.00 E-value=2.4e-51 Score=384.97 Aligned_cols=204 Identities=38% Similarity=0.641 Sum_probs=179.8
Q ss_pred HHHHHHhhh--ccchhccCCCCccCCCCCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCc
Q psy3240 9 IYIDVIKYV--STPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAE 86 (274)
Q Consensus 9 ~~l~~~r~~--~~~~~~~~~w~~~~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~ 86 (274)
++|++.|.+ .....++|+|++ ....|.+|+||||||||+|+||+.+|+++++|||++++|++...+......+..
T Consensus 110 ~~L~~~R~~~~~~~~~~~g~W~~---~~~~g~el~gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~~~~~ 186 (324)
T COG0111 110 LLLALARRIPDADASQRRGEWDR---KAFRGTELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGVDGVV 186 (324)
T ss_pred HHHHHhcCchhhHHHHHcCCccc---cccccccccCCEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhccccce
Confidence 456666766 444457899986 234578999999999999999999999999999988888774554433333444
Q ss_pred -ccCHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccc
Q psy3240 87 -HTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHR 165 (274)
Q Consensus 87 -~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~ 165 (274)
..++++++++||+|++|+|+|++|++||+++.|++||+|++|||+|||++||++||++
T Consensus 187 ~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~--------------------- 245 (324)
T COG0111 187 GVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALLA--------------------- 245 (324)
T ss_pred ecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcceecHHHHHH---------------------
Confidence 4589999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCCCCCCccccCCcEEEccCCCCCcH
Q psy3240 166 VFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQI 245 (274)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~nvi~tPH~~~~t~ 245 (274)
||++|+|+||+||||++||+|+++|||++|||++|||+|+.|.
T Consensus 246 -------------------------------------AL~~G~i~gA~lDVf~~EPl~~~~pL~~~pnV~~TPHia~~T~ 288 (324)
T COG0111 246 -------------------------------------ALDSGKIAGAALDVFEEEPLPADSPLWDLPNVILTPHIGGSTD 288 (324)
T ss_pred -------------------------------------HHHcCCcceEEecCCCCCCCCCCChhhcCCCeEECCcccccCH
Confidence 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCC---CCCccc
Q psy3240 246 ETRQEMARITAQNIINTFHNKP---MIYEVP 273 (274)
Q Consensus 246 ~~~~~~~~~~~~ni~~~~~g~~---~~~~v~ 273 (274)
|++.+++.++++||.+|+.|++ ..+.|+
T Consensus 289 ea~~~~~~~~~~~i~~~l~g~~~~~~~~~v~ 319 (324)
T COG0111 289 EAQERVAEIVAENIVRYLAGGPVVNNAPEVD 319 (324)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCccccc
Confidence 9999999999999999999999 444443
No 2
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=100.00 E-value=9.4e-51 Score=380.95 Aligned_cols=206 Identities=36% Similarity=0.565 Sum_probs=183.8
Q ss_pred HHHHHHhhh--ccchhccCCCCccCCCCCCCCCCCCCEEEEEccChHHHHHHHHHc-cCCCeEEEEeCCCCChh-HhhcC
Q psy3240 9 IYIDVIKYV--STPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLI-PYKVSKFLYTSRSKKPE-ADKRG 84 (274)
Q Consensus 9 ~~l~~~r~~--~~~~~~~~~w~~~~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L~-~~G~~vv~~~~r~~~~~-a~~~g 84 (274)
++|++.|.+ .....++|+|+.+......|.+|+||||||||+|+||+.+|++++ +|||++++|++ ..... ....+
T Consensus 110 l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~-~~~~~~~~~~~ 188 (323)
T PRK15409 110 LVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNAR-RHHKEAEERFN 188 (323)
T ss_pred HHHHHHcCHHHHHHHHHcCCCcccCccccccCCCCCCEEEEEcccHHHHHHHHHHHhcCCCEEEEECC-CCchhhHHhcC
Confidence 567888887 455667899975432223578999999999999999999999998 99997655544 43333 34556
Q ss_pred CcccCHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhccccccc
Q psy3240 85 AEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLH 164 (274)
Q Consensus 85 ~~~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~ 164 (274)
+.+.+++|++++||+|++|+|+|++|+++|+++.|++||||++|||+|||++||++||++
T Consensus 189 ~~~~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~-------------------- 248 (323)
T PRK15409 189 ARYCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIA-------------------- 248 (323)
T ss_pred cEecCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCccccCHHHHHH--------------------
Confidence 777799999999999999999999999999999999999999999999999999999999
Q ss_pred ceeecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCCCCCCccccCCcEEEccCCCCCc
Q psy3240 165 RVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQ 244 (274)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~nvi~tPH~~~~t 244 (274)
||++|+|+||+||||++||+|.++|||.+|||++|||+|+.|
T Consensus 249 --------------------------------------AL~~g~i~gAaLDVf~~EP~~~~~pL~~~~nvilTPHia~~t 290 (323)
T PRK15409 249 --------------------------------------ALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVPHIGSAT 290 (323)
T ss_pred --------------------------------------HHHcCCeeEEEeecCCCCCCCCCchhhcCCCEEEcCcCCCCc
Confidence 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCccc
Q psy3240 245 IETRQEMARITAQNIINTFHNKPMIYEVP 273 (274)
Q Consensus 245 ~~~~~~~~~~~~~ni~~~~~g~~~~~~v~ 273 (274)
.+++.+++..+++||.+|+.|+++.+.|+
T Consensus 291 ~e~~~~~~~~~~~ni~~~~~g~~~~~~vn 319 (323)
T PRK15409 291 HETRYNMAACAVDNLIDALQGKVEKNCVN 319 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCcccC
Confidence 99999999999999999999999998886
No 3
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=100.00 E-value=1.9e-49 Score=372.12 Aligned_cols=207 Identities=43% Similarity=0.670 Sum_probs=189.6
Q ss_pred HHHHHHHhhh--ccchhccCCCCcc-CCCCCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-Hhhc
Q psy3240 8 FIYIDVIKYV--STPVSCRGEWKSW-APNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKR 83 (274)
Q Consensus 8 ~~~l~~~r~~--~~~~~~~~~w~~~-~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~ 83 (274)
.++|++.|.+ .....+.|+|..+ .+.++.|.+++|||+||||+|+||+++|+++++|||+ +.|+++.+.++ ....
T Consensus 109 aLiLa~~R~~~~~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIiG~GrIG~avA~r~~~Fgm~-v~y~~~~~~~~~~~~~ 187 (324)
T COG1052 109 ALILALARRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIGQAVARRLKGFGMK-VLYYDRSPNPEAEKEL 187 (324)
T ss_pred HHHHHHhhchHHHHHHHhcCcccccCCcccccccCCCCCEEEEECCCHHHHHHHHHHhcCCCE-EEEECCCCChHHHhhc
Confidence 3789999998 7778889999876 4556789999999999999999999999999999995 55555555444 4555
Q ss_pred CCcccCHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccc
Q psy3240 84 GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHL 163 (274)
Q Consensus 84 g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~ 163 (274)
++.+.+++|++++||+|++|||+|++|+|+||++.|++||+|++|||+|||++||++||++
T Consensus 188 ~~~y~~l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~------------------- 248 (324)
T COG1052 188 GARYVDLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQALID------------------- 248 (324)
T ss_pred CceeccHHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHH-------------------
Confidence 6788889999999999999999999999999999999999999999999999999999999
Q ss_pred cceeecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCCCCCCccccCCc---EEEccCC
Q psy3240 164 HRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDN---CVILPHI 240 (274)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~n---vi~tPH~ 240 (274)
||++|+|+|||||||+.||.+.++||+..+| |++|||+
T Consensus 249 ---------------------------------------AL~~g~i~gaglDV~e~Ep~~~d~~l~~l~~~~~vvltPHi 289 (324)
T COG1052 249 ---------------------------------------ALKSGKIAGAGLDVFENEPALFDHPLLRLDNFPNVVLTPHI 289 (324)
T ss_pred ---------------------------------------HHHhCCcceEEeeecCCCCCCCChhHhhccCCCCEEEcccc
Confidence 9999999999999999999988999998877 9999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHcCCCCCCccc
Q psy3240 241 GSAQIETRQEMARITAQNIINTFHNKPMIYEVP 273 (274)
Q Consensus 241 ~~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~ 273 (274)
||+|.+++.+|+..+++|+.+|+.|++..++|+
T Consensus 290 a~at~ea~~~m~~~~~~nl~~~~~g~~~~~~v~ 322 (324)
T COG1052 290 ASATEEARKAMAELALENLEAFFDGGVPPNEVN 322 (324)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence 999999999999999999999999999999886
No 4
>PRK06487 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=3.1e-48 Score=362.90 Aligned_cols=201 Identities=29% Similarity=0.450 Sum_probs=175.3
Q ss_pred HHHHHHHhhh--ccchhccCCCCccCCC---CCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhh
Q psy3240 8 FIYIDVIKYV--STPVSCRGEWKSWAPN---FMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADK 82 (274)
Q Consensus 8 ~~~l~~~r~~--~~~~~~~~~w~~~~~~---~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~ 82 (274)
.++|+..|.+ .....++|.|..+... ...+.+|.||||||||+|+||+.+|+++++|||++++|++ .....
T Consensus 109 ~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~-~~~~~--- 184 (317)
T PRK06487 109 ALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQL-PGRPA--- 184 (317)
T ss_pred HHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECC-CCCcc---
Confidence 3567777777 4455677999865321 1235789999999999999999999999999997666654 32221
Q ss_pred cCCcccCHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhccccc
Q psy3240 83 RGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKH 162 (274)
Q Consensus 83 ~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~ 162 (274)
.....+++|++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||++
T Consensus 185 -~~~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~------------------ 245 (317)
T PRK06487 185 -RPDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALAD------------------ 245 (317)
T ss_pred -cccccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHH------------------
Confidence 2345689999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCCCCCCcccc--CCcEEEccCC
Q psy3240 163 LHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQ--LDNCVILPHI 240 (274)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~--~~nvi~tPH~ 240 (274)
||++|+|+||+||||++||+|.++|||. +|||++|||+
T Consensus 246 ----------------------------------------AL~~g~i~gAaLDVf~~EP~~~~~pl~~~~~pnvilTPHi 285 (317)
T PRK06487 246 ----------------------------------------ALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHS 285 (317)
T ss_pred ----------------------------------------HHHcCCeeEEEeecCCCCCCCCCCchhhcCCCCEEECCcc
Confidence 9999999999999999999999999995 8999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHcCCCCCCcc
Q psy3240 241 GSAQIETRQEMARITAQNIINTFHNKPMIYEV 272 (274)
Q Consensus 241 ~~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~v 272 (274)
|+.|.+++++++..+++||.+|++|+|+ +.|
T Consensus 286 a~~t~e~~~~~~~~~~~ni~~~~~g~~~-~~v 316 (317)
T PRK06487 286 AWGSREARQRIVGQLAENARAFFAGKPL-RVV 316 (317)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHcCCCC-cCC
Confidence 9999999999999999999999999875 444
No 5
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=100.00 E-value=8e-48 Score=359.31 Aligned_cols=197 Identities=28% Similarity=0.431 Sum_probs=173.0
Q ss_pred HHHHHHhhh--ccchhccCCCCccCCCC---CCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhc
Q psy3240 9 IYIDVIKYV--STPVSCRGEWKSWAPNF---MCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKR 83 (274)
Q Consensus 9 ~~l~~~r~~--~~~~~~~~~w~~~~~~~---~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~ 83 (274)
++|++.|.+ .....++|.|..+.... ..+.+|.||||||||+|+||+.+|+++++|||++++|++. ... ...
T Consensus 107 l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~-~~~--~~~ 183 (311)
T PRK08410 107 MLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTS-GKN--KNE 183 (311)
T ss_pred HHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEECCCHHHHHHHHHHhhcCCEEEEECCC-ccc--ccc
Confidence 677888887 45556789997532211 1257999999999999999999999999999977666653 222 123
Q ss_pred CCcccCHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccc
Q psy3240 84 GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHL 163 (274)
Q Consensus 84 g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~ 163 (274)
++...+++|++++||+|++|+|+|++|+++|+++.|++||||++|||+|||++||++||++
T Consensus 184 ~~~~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~------------------- 244 (311)
T PRK08410 184 EYERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAK------------------- 244 (311)
T ss_pred CceeecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccCHHHHHH-------------------
Confidence 4556799999999999999999999999999999999999999999999999999999999
Q ss_pred cceeecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCCCCCCccccC---CcEEEccCC
Q psy3240 164 HRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQL---DNCVILPHI 240 (274)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~---~nvi~tPH~ 240 (274)
||++|+|+ |+||||++||+|+++|||.+ |||++|||+
T Consensus 245 ---------------------------------------AL~~g~i~-AaLDV~~~EP~~~~~pL~~~~~~~NvilTPH~ 284 (311)
T PRK08410 245 ---------------------------------------ALDEKDIY-AGLDVLEKEPMEKNHPLLSIKNKEKLLITPHI 284 (311)
T ss_pred ---------------------------------------HHHcCCeE-EEEecCCCCCCCCCChhhccCCCCCEEECCcc
Confidence 99999999 99999999999999999986 899999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHcCCC
Q psy3240 241 GSAQIETRQEMARITAQNIINTFHNKP 267 (274)
Q Consensus 241 ~~~t~~~~~~~~~~~~~ni~~~~~g~~ 267 (274)
|+.|.++..++...+++|+.+|++|+.
T Consensus 285 a~~t~e~~~~~~~~~~~nl~~~~~g~~ 311 (311)
T PRK08410 285 AWASKEARKTLIEKVKENIKDFLEGGK 311 (311)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999863
No 6
>PRK13243 glyoxylate reductase; Reviewed
Probab=100.00 E-value=1e-47 Score=361.62 Aligned_cols=205 Identities=38% Similarity=0.608 Sum_probs=181.8
Q ss_pred HHHHHHhhh--ccchhccCCCCcc----CCCCCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-Hh
Q psy3240 9 IYIDVIKYV--STPVSCRGEWKSW----APNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-AD 81 (274)
Q Consensus 9 ~~l~~~r~~--~~~~~~~~~w~~~----~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~ 81 (274)
++|+..|.+ .....++|.|... .+....|.+|+||+|||||+|+||+.+|++|++|||++++|++. .... ..
T Consensus 111 l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g~~L~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~-~~~~~~~ 189 (333)
T PRK13243 111 LLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRT-RKPEAEK 189 (333)
T ss_pred HHHHHHhCHHHHHHHHHcCCCCccccccccccccccCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCC-CChhhHH
Confidence 567777877 4445567999752 22234578999999999999999999999999999977666654 3333 33
Q ss_pred hcCCcccCHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccc
Q psy3240 82 KRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEK 161 (274)
Q Consensus 82 ~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~ 161 (274)
..++...++++++++||+|++|+|++++|+++++++.|++||+|++|||+|||++||++||++
T Consensus 190 ~~~~~~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~----------------- 252 (333)
T PRK13243 190 ELGAEYRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVK----------------- 252 (333)
T ss_pred HcCCEecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHH-----------------
Confidence 456666799999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCCCCCCccccCCcEEEccCCC
Q psy3240 162 HLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIG 241 (274)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~nvi~tPH~~ 241 (274)
+|++|+|+||+||||++||+| ++|||++|||++|||+|
T Consensus 253 -----------------------------------------aL~~g~i~gAaLDV~~~EP~~-~~pL~~~~nvilTPHia 290 (333)
T PRK13243 253 -----------------------------------------ALKEGWIAGAGLDVFEEEPYY-NEELFSLKNVVLAPHIG 290 (333)
T ss_pred -----------------------------------------HHHcCCeEEEEeccCCCCCCC-CchhhcCCCEEECCcCC
Confidence 999999999999999999998 89999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHcCCCCCCccc
Q psy3240 242 SAQIETRQEMARITAQNIINTFHNKPMIYEVP 273 (274)
Q Consensus 242 ~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~ 273 (274)
+.|.++..++...+++||.+|+.|+++.|.|+
T Consensus 291 ~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~v~ 322 (333)
T PRK13243 291 SATFEAREGMAELVAENLIAFKRGEVPPTLVN 322 (333)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHcCCCCCcccC
Confidence 99999999999999999999999999999886
No 7
>PLN02306 hydroxypyruvate reductase
Probab=100.00 E-value=4.9e-47 Score=363.23 Aligned_cols=206 Identities=30% Similarity=0.526 Sum_probs=180.0
Q ss_pred HHHHHHhhh--ccchhccCCCCccCCCCCCCCCCCCCEEEEEccChHHHHHHHHHc-cCCCeEEEEeCCCCChhH---hh
Q psy3240 9 IYIDVIKYV--STPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLI-PYKVSKFLYTSRSKKPEA---DK 82 (274)
Q Consensus 9 ~~l~~~r~~--~~~~~~~~~w~~~~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L~-~~G~~vv~~~~r~~~~~a---~~ 82 (274)
++|++.|.+ .....++|.|+.|.+....|.+|.||||||||+|.||+.+|++++ +|||++++|++....... ..
T Consensus 130 liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~ 209 (386)
T PLN02306 130 LSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTA 209 (386)
T ss_pred HHHHHHhChHHHHHHHHcCCCccccccccCCcCCCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhh
Confidence 677888888 334456789988876555688999999999999999999999985 999977777654322111 11
Q ss_pred cC------------Ccc-cCHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhh
Q psy3240 83 RG------------AEH-TNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADI 149 (274)
Q Consensus 83 ~g------------~~~-~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~ 149 (274)
.+ +.. .+++|++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||++
T Consensus 210 ~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~----- 284 (386)
T PLN02306 210 YGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVE----- 284 (386)
T ss_pred hcccccccccccccccccCCHHHHHhhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHH-----
Confidence 11 122 489999999999999999999999999999999999999999999999999999999
Q ss_pred hheeehhhcccccccceeecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCCCCCCccc
Q psy3240 150 RVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLL 229 (274)
Q Consensus 150 ~i~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~ 229 (274)
||++|+|+||+||||++||++ ++|||
T Consensus 285 -----------------------------------------------------AL~sg~i~gAaLDVf~~EP~~-~~~L~ 310 (386)
T PLN02306 285 -----------------------------------------------------HLKANPMFRVGLDVFEDEPYM-KPGLA 310 (386)
T ss_pred -----------------------------------------------------HHHhCCeeEEEEeCCCCCCCC-cchHh
Confidence 999999999999999999985 57899
Q ss_pred cCCcEEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCccc
Q psy3240 230 QLDNCVILPHIGSAQIETRQEMARITAQNIINTFHNKPMIYEVP 273 (274)
Q Consensus 230 ~~~nvi~tPH~~~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~ 273 (274)
++|||++|||+|+.|.++++++...+++||.+|++|+++.+.|+
T Consensus 311 ~~pNVilTPHiag~T~e~~~~~~~~~~~ni~~~~~g~~~~~~~~ 354 (386)
T PLN02306 311 DMKNAVVVPHIASASKWTREGMATLAALNVLGKLKGYPVWGDPN 354 (386)
T ss_pred hCCCEEECCccccCcHHHHHHHHHHHHHHHHHHHcCCCCccccc
Confidence 99999999999999999999999999999999999999999887
No 8
>PRK06932 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=5.5e-47 Score=354.17 Aligned_cols=197 Identities=30% Similarity=0.388 Sum_probs=169.7
Q ss_pred HHHHHHhhh--ccchhccCCCCccCC---CCCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhc
Q psy3240 9 IYIDVIKYV--STPVSCRGEWKSWAP---NFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKR 83 (274)
Q Consensus 9 ~~l~~~r~~--~~~~~~~~~w~~~~~---~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~ 83 (274)
++|+..|.+ .....++|.|..+.. ....+.+|+||||||||+|.||+.+|+++++|||+++.|+ +..... .
T Consensus 109 l~l~~~R~~~~~~~~~~~~~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~-~~~~~~---~ 184 (314)
T PRK06932 109 MIFALKHSLMGWYRDQLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAE-HKGASV---C 184 (314)
T ss_pred HHHHHHhChHHHHHHHHcCCCCcCccccccCCcccccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEEC-CCcccc---c
Confidence 566777766 334456789975321 1124579999999999999999999999999999766554 332211 1
Q ss_pred CCcccCHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccc
Q psy3240 84 GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHL 163 (274)
Q Consensus 84 g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~ 163 (274)
...+.+++|++++||+|++|+|+|++|+++|+++.|++||||++|||+|||++||++||++
T Consensus 185 ~~~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~------------------- 245 (314)
T PRK06932 185 REGYTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLD------------------- 245 (314)
T ss_pred ccccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHH-------------------
Confidence 1234689999999999999999999999999999999999999999999999999999999
Q ss_pred cceeecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCCCCCCccc----cCCcEEEccC
Q psy3240 164 HRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLL----QLDNCVILPH 239 (274)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~----~~~nvi~tPH 239 (274)
||++|+|+||+||||++||+|.++||| ++|||++|||
T Consensus 246 ---------------------------------------aL~~g~i~gAaLDV~~~EP~~~~~pl~~~~~~~pnvilTPH 286 (314)
T PRK06932 246 ---------------------------------------ALENGKIAGAALDVLVKEPPEKDNPLIQAAKRLPNLLITPH 286 (314)
T ss_pred ---------------------------------------HHHcCCccEEEEecCCCCCCCCCChhhHhhcCCCCEEECCc
Confidence 999999999999999999999999998 4899999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q psy3240 240 IGSAQIETRQEMARITAQNIINTFHNKP 267 (274)
Q Consensus 240 ~~~~t~~~~~~~~~~~~~ni~~~~~g~~ 267 (274)
+|+.|.++++++...+++||.+|++|+.
T Consensus 287 ia~~t~e~~~~~~~~~~~ni~~~~~~g~ 314 (314)
T PRK06932 287 IAWASDSAVTTLVNKVAQNIEEFVQQGK 314 (314)
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999998763
No 9
>PRK07574 formate dehydrogenase; Provisional
Probab=100.00 E-value=6.9e-47 Score=361.93 Aligned_cols=205 Identities=29% Similarity=0.497 Sum_probs=180.7
Q ss_pred HHHHHHhhh--ccchhccCCCCccCCCCCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCC
Q psy3240 9 IYIDVIKYV--STPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGA 85 (274)
Q Consensus 9 ~~l~~~r~~--~~~~~~~~~w~~~~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~ 85 (274)
++|+.+|.+ .....++|+|..... ...+.+|+||+|||||+|+||+.+|++|++|||++++|++...... ....++
T Consensus 158 l~L~l~R~~~~~~~~~~~g~W~~~~~-~~~~~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~ 236 (385)
T PRK07574 158 MILALVRNYEPSHRQAVEGGWNIADC-VSRSYDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGL 236 (385)
T ss_pred HHHHHHcCHHHHHHHHHhCCCCcccc-cccceecCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCc
Confidence 567778877 445566799975422 1246899999999999999999999999999997666654432222 344566
Q ss_pred cc-cCHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhccccccc
Q psy3240 86 EH-TNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLH 164 (274)
Q Consensus 86 ~~-~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~ 164 (274)
.. .+++|++++||+|++|+|++++|+++|+++.|++||+|++|||+|||++||++||++
T Consensus 237 ~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~-------------------- 296 (385)
T PRK07574 237 TYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVR-------------------- 296 (385)
T ss_pred eecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHH--------------------
Confidence 54 589999999999999999999999999999999999999999999999999999999
Q ss_pred ceeecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCCCCCCccccCCcEEEccCCCCCc
Q psy3240 165 RVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQ 244 (274)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~nvi~tPH~~~~t 244 (274)
||++|+|+||+||||++||+|.++|||.+|||++|||+|+.|
T Consensus 297 --------------------------------------AL~sG~i~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~T 338 (385)
T PRK07574 297 --------------------------------------ALESGHLAGYAGDVWFPQPAPADHPWRTMPRNGMTPHISGTT 338 (385)
T ss_pred --------------------------------------HHHhCCccEEEEecCCCCCCCCCChHHhCCCeEECCccccCc
Confidence 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCcc
Q psy3240 245 IETRQEMARITAQNIINTFHNKPMIYEV 272 (274)
Q Consensus 245 ~~~~~~~~~~~~~ni~~~~~g~~~~~~v 272 (274)
.+++++++..+++||++|+.|+++.++-
T Consensus 339 ~e~~~~~~~~~~~ni~~~~~G~~~~~~~ 366 (385)
T PRK07574 339 LSAQARYAAGTREILECFFEGRPIRDEY 366 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCc
Confidence 9999999999999999999999998763
No 10
>PLN02928 oxidoreductase family protein
Probab=100.00 E-value=1.4e-46 Score=355.78 Aligned_cols=200 Identities=25% Similarity=0.448 Sum_probs=174.1
Q ss_pred HHHHHHHhhh--ccchhccCCCCccCCCCCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhh---
Q psy3240 8 FIYIDVIKYV--STPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADK--- 82 (274)
Q Consensus 8 ~~~l~~~r~~--~~~~~~~~~w~~~~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~--- 82 (274)
+++|+++|.+ ......+|.|.. ..+.+|.||+|||||+|.||+.+|++|++|||++++|+++........
T Consensus 128 ~l~L~~~R~~~~~~~~~~~~~w~~-----~~~~~l~gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~ 202 (347)
T PLN02928 128 YLMLGLLRKQNEMQISLKARRLGE-----PIGDTLFGKTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLI 202 (347)
T ss_pred HHHHHHHhCHHHHHHHHHcCCccc-----ccccCCCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhcc
Confidence 3667778877 333445678853 246799999999999999999999999999997776655422211110
Q ss_pred ----------cCCcccCHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhhe
Q psy3240 83 ----------RGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVI 152 (274)
Q Consensus 83 ----------~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~ 152 (274)
......+++|++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||++
T Consensus 203 ~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~-------- 274 (347)
T PLN02928 203 PNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLA-------- 274 (347)
T ss_pred ccccccccccccCcccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHH--------
Confidence 11245689999999999999999999999999999999999999999999999999999999
Q ss_pred eehhhcccccccceeecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCCCCCCccccCC
Q psy3240 153 SISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLD 232 (274)
Q Consensus 153 ~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~ 232 (274)
||++|+|+||+||||++||+|+++|||.+|
T Consensus 275 --------------------------------------------------AL~~g~i~gAaLDV~~~EP~~~~~pL~~~~ 304 (347)
T PLN02928 275 --------------------------------------------------ALESGHLGGLAIDVAWSEPFDPDDPILKHP 304 (347)
T ss_pred --------------------------------------------------HHHcCCeeEEEEccCCCCCCCCCChhhcCC
Confidence 999999999999999999999999999999
Q ss_pred cEEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCC
Q psy3240 233 NCVILPHIGSAQIETRQEMARITAQNIINTFHNKPMIY 270 (274)
Q Consensus 233 nvi~tPH~~~~t~~~~~~~~~~~~~ni~~~~~g~~~~~ 270 (274)
||++|||+|+.|.+++++++..+++|+.+|+.|+|+.+
T Consensus 305 nviiTPHia~~t~~~~~~~~~~~~~nl~~~~~g~~~~~ 342 (347)
T PLN02928 305 NVIITPHVAGVTEYSYRSMGKIVGDAALQLHAGRPLTG 342 (347)
T ss_pred CEEECCcCCCChHHHHHHHHHHHHHHHHHHHCCCCCCc
Confidence 99999999999999999999999999999999998765
No 11
>PLN03139 formate dehydrogenase; Provisional
Probab=100.00 E-value=2.7e-46 Score=357.79 Aligned_cols=202 Identities=27% Similarity=0.488 Sum_probs=178.5
Q ss_pred HHHHHHhhh--ccchhccCCCCccCCCCCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCC
Q psy3240 9 IYIDVIKYV--STPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGA 85 (274)
Q Consensus 9 ~~l~~~r~~--~~~~~~~~~w~~~~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~ 85 (274)
++|+++|.+ .....++|.|.... ....+.+|.||+|||||+|+||+.+|++|++|||++++|++...... ....|+
T Consensus 165 liL~l~R~~~~~~~~~~~g~W~~~~-~~~~~~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~ 243 (386)
T PLN03139 165 RILILLRNFLPGYHQVVSGEWNVAG-IAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGA 243 (386)
T ss_pred HHHHHHcCcHHHHHHHHhCCCcccc-ccCCCcCCCCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCc
Confidence 577888877 45566789997421 12356899999999999999999999999999997766654433333 445566
Q ss_pred ccc-CHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhccccccc
Q psy3240 86 EHT-NIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLH 164 (274)
Q Consensus 86 ~~~-sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~ 164 (274)
... +++|++++||+|++|+|++++|+++|+++.|++||+|++|||+|||++||++||++
T Consensus 244 ~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~-------------------- 303 (386)
T PLN03139 244 KFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVAD-------------------- 303 (386)
T ss_pred eecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHH--------------------
Confidence 654 89999999999999999999999999999999999999999999999999999999
Q ss_pred ceeecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCCCCCCccccCCcEEEccCCCCCc
Q psy3240 165 RVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQ 244 (274)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~nvi~tPH~~~~t 244 (274)
||++|+|+||+||||++||+|.++|||.+|||++|||+|+.|
T Consensus 304 --------------------------------------AL~sG~l~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~t 345 (386)
T PLN03139 304 --------------------------------------ACSSGHIGGYGGDVWYPQPAPKDHPWRYMPNHAMTPHISGTT 345 (386)
T ss_pred --------------------------------------HHHcCCceEEEEcCCCCCCCCCCChhhcCCCeEEcccccccC
Confidence 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCC
Q psy3240 245 IETRQEMARITAQNIINTFHNKPMI 269 (274)
Q Consensus 245 ~~~~~~~~~~~~~ni~~~~~g~~~~ 269 (274)
.+++.+++..+++|+.+|+.|+++.
T Consensus 346 ~~~~~r~~~~~~~nl~~~~~G~~~~ 370 (386)
T PLN03139 346 IDAQLRYAAGVKDMLDRYFKGEDFP 370 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 9999999999999999999999754
No 12
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=3.8e-46 Score=359.64 Aligned_cols=202 Identities=32% Similarity=0.494 Sum_probs=178.1
Q ss_pred HHHHHHhhh--ccchhccCCCCccCCCCCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCc
Q psy3240 9 IYIDVIKYV--STPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAE 86 (274)
Q Consensus 9 ~~l~~~r~~--~~~~~~~~~w~~~~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~ 86 (274)
++|++.|.+ .....++|+|..+. ..|.+|.||||||||+|+||+.+|+++++|||++++|++... . ...++.
T Consensus 119 l~L~~~R~~~~~~~~~~~g~w~~~~---~~~~~L~gktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~-~--~~~~~~ 192 (409)
T PRK11790 119 EIILLLRGIPEKNAKAHRGGWNKSA---AGSFEVRGKTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDK-L--PLGNAR 192 (409)
T ss_pred HHHHHHcChHHHHHHHHcCcccccc---cCcccCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCcc-c--ccCCce
Confidence 566777777 44455679997532 357899999999999999999999999999997777765322 1 112344
Q ss_pred cc-CHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccc
Q psy3240 87 HT-NIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHR 165 (274)
Q Consensus 87 ~~-sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~ 165 (274)
.. +++|++++||+|++|+|+|++|+++++++.|++||+|++|||+|||++||++||++
T Consensus 193 ~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~--------------------- 251 (409)
T PRK11790 193 QVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVDIDALAD--------------------- 251 (409)
T ss_pred ecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCcccCHHHHHH---------------------
Confidence 43 89999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCCCC----CCccccCCcEEEccCCC
Q psy3240 166 VFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPL----DSPLLQLDNCVILPHIG 241 (274)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~----~~~l~~~~nvi~tPH~~ 241 (274)
||++|+|+||+||||++||+|. ++|||.+|||++|||+|
T Consensus 252 -------------------------------------aL~~g~i~gaalDVf~~EP~~~~~~~~~pL~~~~nvilTPHia 294 (409)
T PRK11790 252 -------------------------------------ALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPHIG 294 (409)
T ss_pred -------------------------------------HHHcCCceEEEEcCCCCCCCCccccccchhhcCCCEEECCcCC
Confidence 9999999999999999999987 47999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHcCCCCCCcccC
Q psy3240 242 SAQIETRQEMARITAQNIINTFHNKPMIYEVPL 274 (274)
Q Consensus 242 ~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~~ 274 (274)
++|.+++.+++..+++|+.+|+.|+++.+.||+
T Consensus 295 ~~t~ea~~~~~~~~~~nl~~~~~~~~~~~~vn~ 327 (409)
T PRK11790 295 GSTQEAQENIGLEVAGKLVKYSDNGSTLSAVNF 327 (409)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCcCcceec
Confidence 999999999999999999999999999998874
No 13
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=100.00 E-value=1.1e-45 Score=345.25 Aligned_cols=200 Identities=25% Similarity=0.356 Sum_probs=172.3
Q ss_pred HHHHHHhhh--ccchhccCCCCccCCCCCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCC
Q psy3240 9 IYIDVIKYV--STPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGA 85 (274)
Q Consensus 9 ~~l~~~r~~--~~~~~~~~~w~~~~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~ 85 (274)
++|+..|.+ ......+|.|... .+.+++|+||||||+|.||+.+|++|++|||++++|++...... .... .
T Consensus 106 ~~L~~~r~~~~~~~~~~~~~w~~~-----~~~~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~~-~ 179 (312)
T PRK15469 106 QVLHWFRRFDDYQALQNSSHWQPL-----PEYHREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQSF-A 179 (312)
T ss_pred HHHHHHcChHHHHHHHHhCCcCCC-----CCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCceee-c
Confidence 456666666 2334466889642 24689999999999999999999999999997777765433211 1111 1
Q ss_pred cccCHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccc
Q psy3240 86 EHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHR 165 (274)
Q Consensus 86 ~~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~ 165 (274)
...++++++++||+|++|+|+|++|+++++++.|++||+|++|||+|||++||++||++
T Consensus 180 ~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~--------------------- 238 (312)
T PRK15469 180 GREELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLA--------------------- 238 (312)
T ss_pred ccccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHH---------------------
Confidence 23489999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCCCCCCccccCCcEEEccCCCCCcH
Q psy3240 166 VFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQI 245 (274)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~nvi~tPH~~~~t~ 245 (274)
||++|+|+||+||||++||+|.++|||++|||++|||+|+.|.
T Consensus 239 -------------------------------------aL~~g~i~gaalDVf~~EPl~~~~pl~~~~nvi~TPHiag~t~ 281 (312)
T PRK15469 239 -------------------------------------ALDSGKVKGAMLDVFSREPLPPESPLWQHPRVAITPHVAAVTR 281 (312)
T ss_pred -------------------------------------HHhcCCeeeEEecCCCCCCCCCCChhhcCCCeEECCcCCCCcC
Confidence 9999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCcccC
Q psy3240 246 ETRQEMARITAQNIINTFHNKPMIYEVPL 274 (274)
Q Consensus 246 ~~~~~~~~~~~~ni~~~~~g~~~~~~v~~ 274 (274)
+. ++...+++|+.+|.+|+++.|.|++
T Consensus 282 ~~--~~~~~~~~n~~~~~~g~~~~~~V~~ 308 (312)
T PRK15469 282 PA--EAVEYISRTIAQLEKGERVCGQVDR 308 (312)
T ss_pred HH--HHHHHHHHHHHHHHcCCCCcccCCc
Confidence 64 5888999999999999999999874
No 14
>KOG0069|consensus
Probab=100.00 E-value=1.1e-45 Score=345.90 Aligned_cols=206 Identities=45% Similarity=0.783 Sum_probs=192.6
Q ss_pred HHHHHHHhhh--ccchhccCCCCccCCCCCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh--Hhhc
Q psy3240 8 FIYIDVIKYV--STPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--ADKR 83 (274)
Q Consensus 8 ~~~l~~~r~~--~~~~~~~~~w~~~~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a~~~ 83 (274)
+++|.++|.+ .......|+| .|...++.|.++.||||||+|+|+||+.+|++|++||+ .+.|+.|...+. +.+.
T Consensus 127 ~lil~~~R~~~~g~~~~~~g~w-~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~-~i~y~~r~~~~~~~~~~~ 204 (336)
T KOG0069|consen 127 SLLLALLRRFSEGNEMVRNGGW-GWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPFGC-VILYHSRTQLPPEEAYEY 204 (336)
T ss_pred HHHHHHHhhhhhhhhhhhcCCc-cccCCccccccccCCEEEEecCcHHHHHHHHhhhhccc-eeeeecccCCchhhHHHh
Confidence 5688889988 5667788999 88899999999999999999999999999999999996 888888877644 5556
Q ss_pred CCcccCHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccc
Q psy3240 84 GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHL 163 (274)
Q Consensus 84 g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~ 163 (274)
+....++++++++||+|++|||+|++|++++|++.+++||+|++|||++||+++|++++.+
T Consensus 205 ~~~~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~e------------------- 265 (336)
T KOG0069|consen 205 YAEFVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVE------------------- 265 (336)
T ss_pred cccccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHH-------------------
Confidence 7777899999999999999999999999999999999999999999999999999999999
Q ss_pred cceeecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCCCCCCccccCCcEEEccCCCCC
Q psy3240 164 HRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSA 243 (274)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~nvi~tPH~~~~ 243 (274)
||++|+|.+|+||||++|| +.++||+.++||++|||+|+.
T Consensus 266 ---------------------------------------aL~sG~i~~aGlDVf~~EP-~~~~~l~~~dnvv~~PHigs~ 305 (336)
T KOG0069|consen 266 ---------------------------------------ALKSGKIAGAGLDVFEPEP-PVDHPLLTLDNVVILPHIGSA 305 (336)
T ss_pred ---------------------------------------HHhcCCcccccccccCCCC-CCCcchhcccceeEecccccC
Confidence 9999999999999999999 899999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHcCCCCCCcccC
Q psy3240 244 QIETRQEMARITAQNIINTFHNKPMIYEVPL 274 (274)
Q Consensus 244 t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~~ 274 (274)
|.+++.+|+..++.|+.++++|+|+..+|++
T Consensus 306 t~~t~~~m~~~v~~n~~~~~~g~~~~~~~~~ 336 (336)
T KOG0069|consen 306 TLETREKMAEIVLNNLLAFFSGKPLLTPVLL 336 (336)
T ss_pred cHHHHHHHHHHHHHHHHHHHccCCCCCcCCC
Confidence 9999999999999999999999999988763
No 15
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=100.00 E-value=3e-45 Score=363.14 Aligned_cols=205 Identities=30% Similarity=0.560 Sum_probs=182.2
Q ss_pred HHHHHHHhhh--ccchhccCCCCccCCCCCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCC
Q psy3240 8 FIYIDVIKYV--STPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGA 85 (274)
Q Consensus 8 ~~~l~~~r~~--~~~~~~~~~w~~~~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~ 85 (274)
.++|++.|.+ .....++|.|.+. ...|.+|.||+|||||+|+||+.+|++|++|||++++|++......+...++
T Consensus 105 ~l~L~~~R~~~~~~~~~~~g~W~~~---~~~g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~ 181 (525)
T TIGR01327 105 AMLLAAARNIPQADASLKEGEWDRK---AFMGTELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISPERAEQLGV 181 (525)
T ss_pred HHHHHHhcCHHHHHHHHHcCCcccc---ccCccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChhHHHhcCC
Confidence 3567888887 4445567999753 2357899999999999999999999999999997777765433222455676
Q ss_pred ccc-CHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhccccccc
Q psy3240 86 EHT-NIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLH 164 (274)
Q Consensus 86 ~~~-sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~ 164 (274)
... +++|++++||+|++|+|++++|+++++++.|++||+|++|||+|||++||++||++
T Consensus 182 ~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~-------------------- 241 (525)
T TIGR01327 182 ELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYE-------------------- 241 (525)
T ss_pred EEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHH--------------------
Confidence 655 89999999999999999999999999999999999999999999999999999999
Q ss_pred ceeecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCCCCCCccccCCcEEEccCCCCCc
Q psy3240 165 RVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQ 244 (274)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~nvi~tPH~~~~t 244 (274)
||++|+|+||+||||++||+ .++|||++|||++|||+|+.|
T Consensus 242 --------------------------------------aL~~g~i~gAaLDVf~~EP~-~~~pL~~~~nvi~TPHia~~t 282 (525)
T TIGR01327 242 --------------------------------------ALEEGHVRAAALDVFEKEPP-TDNPLFDLDNVIATPHLGAST 282 (525)
T ss_pred --------------------------------------HHHcCCeeEEEEecCCCCCC-CCChhhcCCCeEECCCccccH
Confidence 99999999999999999995 589999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCcccC
Q psy3240 245 IETRQEMARITAQNIINTFHNKPMIYEVPL 274 (274)
Q Consensus 245 ~~~~~~~~~~~~~ni~~~~~g~~~~~~v~~ 274 (274)
.+++.+++..+++|+.+|+.|+++.+.||.
T Consensus 283 ~e~~~~~~~~~~~ni~~~~~g~~~~~~vn~ 312 (525)
T TIGR01327 283 REAQENVATQVAEQVLDALKGLPVPNAVNA 312 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCceeeC
Confidence 999999999999999999999999998874
No 16
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=100.00 E-value=4.5e-46 Score=321.17 Aligned_cols=173 Identities=42% Similarity=0.705 Sum_probs=147.7
Q ss_pred HHHHHHhhh--ccchhccCCCCccCCCCCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCC
Q psy3240 9 IYIDVIKYV--STPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGA 85 (274)
Q Consensus 9 ~~l~~~r~~--~~~~~~~~~w~~~~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~ 85 (274)
++|+..|.+ ......+|.| +......+++|+|+||||||+|.||+.+|++|++|||++++|+++..... ....++
T Consensus 3 l~L~~~R~~~~~~~~~~~~~W--~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~ 80 (178)
T PF02826_consen 3 LMLALLRRLPEYHEAQRNGEW--ASRERFPGRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGV 80 (178)
T ss_dssp HHHHHHTTHHHHHHHHHTTBH--HHHTTTTBS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTE
T ss_pred HHHHHHhCHHHHHHHHHcCCC--CCCcCCCccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccc
Confidence 578888888 4556678999 22233567999999999999999999999999999997777766555443 455677
Q ss_pred cccCHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccc
Q psy3240 86 EHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHR 165 (274)
Q Consensus 86 ~~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~ 165 (274)
...+++|++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||++
T Consensus 81 ~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~--------------------- 139 (178)
T PF02826_consen 81 EYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLD--------------------- 139 (178)
T ss_dssp EESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHH---------------------
T ss_pred eeeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHH---------------------
Confidence 77799999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCCCCCCccccCCcEEEccCCC
Q psy3240 166 VFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIG 241 (274)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~nvi~tPH~~ 241 (274)
||++|++.||+||||++||+|.++|||++|||++|||+|
T Consensus 140 -------------------------------------aL~~g~i~ga~lDV~~~EP~~~~~~l~~~~nvi~TPH~a 178 (178)
T PF02826_consen 140 -------------------------------------ALESGKIAGAALDVFEPEPLPADSPLWDLPNVILTPHIA 178 (178)
T ss_dssp -------------------------------------HHHTTSEEEEEESS-SSSSSSTTHHHHTSTTEEEESS-T
T ss_pred -------------------------------------HHhhccCceEEEECCCCCCCCCCChHHcCCCEEEeCccC
Confidence 999999999999999999999999999999999999986
No 17
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=3.6e-45 Score=362.71 Aligned_cols=204 Identities=33% Similarity=0.590 Sum_probs=182.9
Q ss_pred HHHHHHhhh--ccchhccCCCCccCCCCCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCc
Q psy3240 9 IYIDVIKYV--STPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAE 86 (274)
Q Consensus 9 ~~l~~~r~~--~~~~~~~~~w~~~~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~ 86 (274)
++|++.|.+ .....++|.|++.. +.|.+|.||+|||||+|+||+.+|++|++|||++++|++..........++.
T Consensus 108 l~L~~~R~~~~~~~~~~~g~W~~~~---~~g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~ 184 (526)
T PRK13581 108 LMLALARNIPQAHASLKAGKWERKK---FMGVELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISPERAAQLGVE 184 (526)
T ss_pred HHHHHHcCHHHHHHHHHcCCCCccC---ccccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChhHHHhcCCE
Confidence 577888887 33445679997532 3578999999999999999999999999999987777654332224556777
Q ss_pred ccCHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccce
Q psy3240 87 HTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRV 166 (274)
Q Consensus 87 ~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~ 166 (274)
..+++|++++||+|++|+|++++|+++++++.|++||+|++|||+|||++||++||++
T Consensus 185 ~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~---------------------- 242 (526)
T PRK13581 185 LVSLDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAALAE---------------------- 242 (526)
T ss_pred EEcHHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHH----------------------
Confidence 7799999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCCCCCCccccCCcEEEccCCCCCcHH
Q psy3240 167 FTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIE 246 (274)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~nvi~tPH~~~~t~~ 246 (274)
||++|+|+||+||||++||++ ++|||.+|||++|||+|+.|.+
T Consensus 243 ------------------------------------aL~~g~i~gAaLDVf~~EP~~-~~pL~~~~nvilTPHia~~t~e 285 (526)
T PRK13581 243 ------------------------------------ALKSGKVAGAALDVFEKEPPT-DSPLFELPNVVVTPHLGASTAE 285 (526)
T ss_pred ------------------------------------HHhcCCeeEEEEecCCCCCCC-CchhhcCCCeeEcCccccchHH
Confidence 999999999999999999986 8999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcccC
Q psy3240 247 TRQEMARITAQNIINTFHNKPMIYEVPL 274 (274)
Q Consensus 247 ~~~~~~~~~~~ni~~~~~g~~~~~~v~~ 274 (274)
++.+++..+++|+.+|++|+++.|.|++
T Consensus 286 ~~~~~~~~~~~ni~~~~~g~~~~~~vn~ 313 (526)
T PRK13581 286 AQENVAIQVAEQVIDALRGGPVPNAVNL 313 (526)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCceeeC
Confidence 9999999999999999999999999874
No 18
>KOG0068|consensus
Probab=100.00 E-value=4.6e-44 Score=331.40 Aligned_cols=202 Identities=27% Similarity=0.454 Sum_probs=184.3
Q ss_pred HHHHHHhhh--ccchhccCCCCccCCCCCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCc
Q psy3240 9 IYIDVIKYV--STPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAE 86 (274)
Q Consensus 9 ~~l~~~r~~--~~~~~~~~~w~~~~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~ 86 (274)
+++.+=|.+ +....++|+|++ ..+.|.+|.|||+||+|+|.||+.+|++++++||+++.||+-.+.+.+...|++
T Consensus 114 li~SLaR~i~~A~~s~k~g~wnr---~~~~G~el~GKTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~~~~~~~a~gvq 190 (406)
T KOG0068|consen 114 LILSLARQIGQASASMKEGKWNR---VKYLGWELRGKTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPITPMALAEAFGVQ 190 (406)
T ss_pred HHHHHhhhcchhheeeecCceee---cceeeeEEeccEEEEeecccchHHHHHHHHhcCceEEeecCCCchHHHHhccce
Confidence 345555666 445667899975 346789999999999999999999999999999999999888877778889999
Q ss_pred ccCHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccce
Q psy3240 87 HTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRV 166 (274)
Q Consensus 87 ~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~ 166 (274)
.++++|+++.||+|++|+|++|+|+++++++.|++||+|..+||++||++||+.||.+
T Consensus 191 ~vsl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRGGvVDe~ALv~---------------------- 248 (406)
T KOG0068|consen 191 LVSLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARGGVVDEPALVR---------------------- 248 (406)
T ss_pred eeeHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecCCceechHHHHH----------------------
Confidence 9999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCCCC--CCccccCCcEEEccCCCCCc
Q psy3240 167 FTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPL--DSPLLQLDNCVILPHIGSAQ 244 (274)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~--~~~l~~~~nvi~tPH~~~~t 244 (274)
||++|+++||++|||+.||.-. ++.|.++|||++|||+|+.|
T Consensus 249 ------------------------------------Al~sG~vaGaAlDVy~~Epp~~~~~~~Lv~hpnVi~TpHlgasT 292 (406)
T KOG0068|consen 249 ------------------------------------ALDSGQVAGAALDVYPEEPPKNGWDSELVSHPNVIVTPHLGAST 292 (406)
T ss_pred ------------------------------------HHhcCcccceeeecccCCCCccchhHHHhcCCceeecCccccch
Confidence 9999999999999999999866 89999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCcc
Q psy3240 245 IETRQEMARITAQNIINTFHNKPMIYEV 272 (274)
Q Consensus 245 ~~~~~~~~~~~~~ni~~~~~g~~~~~~v 272 (274)
.|++.+++..+++++.+|++| .....|
T Consensus 293 ~EAq~~iaievaea~~~~~~~-~~~g~V 319 (406)
T KOG0068|consen 293 EEAQSRIAIEVAEAVSDYING-NSAGSV 319 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhcc-Ccccee
Confidence 999999999999999999998 444444
No 19
>PRK06436 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=1.1e-42 Score=323.90 Aligned_cols=193 Identities=26% Similarity=0.394 Sum_probs=168.4
Q ss_pred HHHHHHhhh--ccchhccCCCCccCCCCCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCC-
Q psy3240 9 IYIDVIKYV--STPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGA- 85 (274)
Q Consensus 9 ~~l~~~r~~--~~~~~~~~~w~~~~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~- 85 (274)
++|++.|.+ .....++|+|... .+.+|+||+|||||+|+||+++|+++++|||++++|+++... .+.
T Consensus 92 l~L~l~R~i~~~~~~~~~g~w~~~-----~~~~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~-----~~~~ 161 (303)
T PRK06436 92 LLLAWAKNICENNYNMKNGNFKQS-----PTKLLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN-----DGIS 161 (303)
T ss_pred HHHHHHcChHHHHHHHHcCCCCCC-----CCCCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc-----cCcc
Confidence 567777877 4445567999752 357999999999999999999999999999977766654322 122
Q ss_pred -cccCHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhccccccc
Q psy3240 86 -EHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLH 164 (274)
Q Consensus 86 -~~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~ 164 (274)
...++++++++||+|++|+|++++|+++++++.|++||||++|||+|||+++|++||++
T Consensus 162 ~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~-------------------- 221 (303)
T PRK06436 162 SIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLN-------------------- 221 (303)
T ss_pred cccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHH--------------------
Confidence 13589999999999999999999999999999999999999999999999999999999
Q ss_pred ceeecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCCCCCCccccCCcEEEccCCC-CC
Q psy3240 165 RVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIG-SA 243 (274)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~nvi~tPH~~-~~ 243 (274)
+|++|++.||+||||++||+|+++ .+|||++|||++ +.
T Consensus 222 --------------------------------------aL~~g~i~~a~lDV~~~EP~~~~~---~~~nviiTPHi~g~~ 260 (303)
T PRK06436 222 --------------------------------------FLRNHNDKYYLSDVWWNEPIITET---NPDNVILSPHVAGGM 260 (303)
T ss_pred --------------------------------------HHHcCCceEEEEccCCCCCCCccC---CCCCEEECCcccccc
Confidence 999999999999999999998776 589999999976 58
Q ss_pred cHHHHHHHHHHHHHHHHHHHcCCCCCCccc
Q psy3240 244 QIETRQEMARITAQNIINTFHNKPMIYEVP 273 (274)
Q Consensus 244 t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~ 273 (274)
|.++.+++...+++|+.+|++|++ .|.|+
T Consensus 261 t~e~~~~~~~~~~~ni~~~~~g~~-~~~V~ 289 (303)
T PRK06436 261 SGEIMQPAVALAFENIKNFFEGKP-KNIVR 289 (303)
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCC-CceEc
Confidence 899999999999999999999987 57764
No 20
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=100.00 E-value=9e-43 Score=327.81 Aligned_cols=202 Identities=19% Similarity=0.323 Sum_probs=173.5
Q ss_pred HHHHHHhhh--ccchhccCCCCccCCCCCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCc
Q psy3240 9 IYIDVIKYV--STPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAE 86 (274)
Q Consensus 9 ~~l~~~r~~--~~~~~~~~~w~~~~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~ 86 (274)
++|++.|.+ ......+|.|. |... ..|++|+|++|||||+|.||+++|++|+++|+++++|++...... . ...
T Consensus 113 l~L~~~R~~~~~~~~~~~~~~~-w~~~-~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~--~-~~~ 187 (330)
T PRK12480 113 IALQLVRRFPDIERRVQAHDFT-WQAE-IMSKPVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDL--D-FLT 187 (330)
T ss_pred HHHHHHHhHHHHHHHHHhCCcc-cccc-cCccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhh--h-hhh
Confidence 567777777 23334567763 4322 357899999999999999999999999999998777765433211 1 122
Q ss_pred c-cCHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccc
Q psy3240 87 H-TNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHR 165 (274)
Q Consensus 87 ~-~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~ 165 (274)
. .++++++++||+|++|+|++++|+++++++.+++||+|++|||+|||++||++||++
T Consensus 188 ~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~--------------------- 246 (330)
T PRK12480 188 YKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIA--------------------- 246 (330)
T ss_pred ccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHH---------------------
Confidence 3 389999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCCC-------------CCCccccCC
Q psy3240 166 VFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLP-------------LDSPLLQLD 232 (274)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~-------------~~~~l~~~~ 232 (274)
||++|+|+||+||||++||++ ..+|||++|
T Consensus 247 -------------------------------------aL~~g~i~gaalDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~ 289 (330)
T PRK12480 247 -------------------------------------AVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLELIEHE 289 (330)
T ss_pred -------------------------------------HHHcCCeeEEEEeccCCCCccccccccccccCchhhHHHhcCC
Confidence 999999999999999999962 124799999
Q ss_pred cEEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCccc
Q psy3240 233 NCVILPHIGSAQIETRQEMARITAQNIINTFHNKPMIYEVP 273 (274)
Q Consensus 233 nvi~tPH~~~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~ 273 (274)
||++|||+|+.|.+++.++...+++|+.+|+.|++..++||
T Consensus 290 nvilTPHia~~t~~~~~~~~~~~~~n~~~~~~~~~~~~~~~ 330 (330)
T PRK12480 290 RILVTPHIAFFSDEAVQNLVEGGLNAALSVINTGTCETRLN 330 (330)
T ss_pred CEEECCcccccHHHHHHHHHHHHHHHHHHHHhCCCCcccCC
Confidence 99999999999999999999999999999999999999886
No 21
>PRK08605 D-lactate dehydrogenase; Validated
Probab=100.00 E-value=2e-41 Score=318.80 Aligned_cols=203 Identities=23% Similarity=0.398 Sum_probs=174.6
Q ss_pred HHHHHHhhh--ccchhccCCCCccCCCCCCCCCCCCCEEEEEccChHHHHHHHHH-ccCCCeEEEEeCCCCChhHhhcCC
Q psy3240 9 IYIDVIKYV--STPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKL-IPYKVSKFLYTSRSKKPEADKRGA 85 (274)
Q Consensus 9 ~~l~~~r~~--~~~~~~~~~w~~~~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L-~~~G~~vv~~~~r~~~~~a~~~g~ 85 (274)
++|+..|.+ .....++|.| .|... +.|++|+|++|||||+|.||+++|++| +++|+++++|+++... .. ...+
T Consensus 113 ~~l~~~R~~~~~~~~~~~~~~-~~~~~-~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~-~~-~~~~ 188 (332)
T PRK08605 113 QAINLVRHFNQIQTKVREHDF-RWEPP-ILSRSIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNA-KA-ATYV 188 (332)
T ss_pred HHHHHhcChHHHHHHHHhCCc-ccccc-cccceeCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccH-hH-Hhhc
Confidence 466777777 2334556778 35443 457899999999999999999999999 7899977776654332 21 1233
Q ss_pred ccc-CHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhccccccc
Q psy3240 86 EHT-NIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLH 164 (274)
Q Consensus 86 ~~~-sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~ 164 (274)
... ++++++++||+|++|+|.++.|+++++++.++.||+|++|||+|||.++|+++|++
T Consensus 189 ~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~-------------------- 248 (332)
T PRK08605 189 DYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLD-------------------- 248 (332)
T ss_pred cccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHH--------------------
Confidence 444 89999999999999999999999999999999999999999999999999999999
Q ss_pred ceeecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCC--CCCCC-----------ccccC
Q psy3240 165 RVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEP--LPLDS-----------PLLQL 231 (274)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep--~~~~~-----------~l~~~ 231 (274)
+|++|+|+||+||||++|| +|.++ +||.+
T Consensus 249 --------------------------------------aL~~g~i~gaalDV~~~Ep~~~~~~~~~~~~~~~~~~~L~~~ 290 (332)
T PRK08605 249 --------------------------------------ALDNGLIKGAALDTYEFERPLFPSDQRGQTINDPLLESLINR 290 (332)
T ss_pred --------------------------------------HHHhCCeeEEEEecccCCCCccccccccccccchhhHHHhcC
Confidence 9999999999999999998 56665 49999
Q ss_pred CcEEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCccc
Q psy3240 232 DNCVILPHIGSAQIETRQEMARITAQNIINTFHNKPMIYEVP 273 (274)
Q Consensus 232 ~nvi~tPH~~~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~ 273 (274)
|||++|||+|++|.++.++++..+++|+.+|++|++..++|+
T Consensus 291 ~nvilTPHia~~t~e~~~~~~~~~~~n~~~~~~g~~~~~~~~ 332 (332)
T PRK08605 291 EDVILTPHIAFYTDAAVKNLIVDALDATLEVLQTGTTRLRVN 332 (332)
T ss_pred CCEEECCcccccHHHHHHHHHHHHHHHHHHHHcCCCCCCCcC
Confidence 999999999999999999999999999999999999999885
No 22
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=100.00 E-value=3.4e-39 Score=308.09 Aligned_cols=167 Identities=28% Similarity=0.432 Sum_probs=149.2
Q ss_pred CCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcc----cHH
Q psy3240 37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPD----THH 112 (274)
Q Consensus 37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~----T~~ 112 (274)
|.+|+||||||||+|+||+.+|++|++|||++++|++... .. .....+.++++++++||+|++|+|+|++ |++
T Consensus 111 g~~L~gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~-~~--~~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~ 187 (378)
T PRK15438 111 GFSLHDRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRA-DR--GDEGDFRSLDELVQEADILTFHTPLFKDGPYKTLH 187 (378)
T ss_pred CCCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCccc-cc--ccccccCCHHHHHhhCCEEEEeCCCCCCccccccc
Confidence 4689999999999999999999999999998777764322 11 1122456999999999999999999996 999
Q ss_pred hccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccceeecCCCcccCccceeeeeecccCCcc
Q psy3240 113 LINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTV 192 (274)
Q Consensus 113 li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 192 (274)
+++++.|++||+|++|||+|||++||++||++
T Consensus 188 li~~~~l~~mk~gailIN~aRG~vVDe~AL~~------------------------------------------------ 219 (378)
T PRK15438 188 LADEKLIRSLKPGAILINACRGAVVDNTALLT------------------------------------------------ 219 (378)
T ss_pred ccCHHHHhcCCCCcEEEECCCchhcCHHHHHH------------------------------------------------
Confidence 99999999999999999999999999999999
Q ss_pred ceeeehhhhHHHhcCceeEEEeccCCCCCCCCCCccccCCcEEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q psy3240 193 GIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIINTFHNKP 267 (274)
Q Consensus 193 ~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~nvi~tPH~~~~t~~~~~~~~~~~~~ni~~~~~g~~ 267 (274)
+|++|++.||+||||++||++ +++|+.+++ ++|||+|++|.++..++..++++|+.+|+ |++
T Consensus 220 ----------aL~~g~~~ga~LDV~e~EP~~-~~~Ll~~~~-i~TPHiAg~s~e~~~~~~~~~~~~l~~~~-~~~ 281 (378)
T PRK15438 220 ----------CLNEGQKLSVVLDVWEGEPEL-NVELLKKVD-IGTPHIAGYTLEGKARGTTQVFEAYSKFI-GHE 281 (378)
T ss_pred ----------HHHhCCCcEEEEecCCCCCCC-chhhhhcCC-EECCccCcCcHHHHHHHHHHHHHHHHHHH-cCc
Confidence 999999999999999999974 677887765 99999999999999999999999999998 554
No 23
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=100.00 E-value=5.6e-39 Score=307.06 Aligned_cols=169 Identities=28% Similarity=0.409 Sum_probs=152.6
Q ss_pred CCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCc----ccHH
Q psy3240 37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTP----DTHH 112 (274)
Q Consensus 37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~----~T~~ 112 (274)
|.+|+||||||||+|+||+.+|+++++|||++++|++.... ...+....+++|++++||+|++|+|+|+ .|++
T Consensus 111 g~~l~gktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~---~~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~ 187 (381)
T PRK00257 111 GVDLAERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQE---AEGDGDFVSLERILEECDVISLHTPLTKEGEHPTRH 187 (381)
T ss_pred CCCcCcCEEEEECCCHHHHHHHHHHHHCCCEEEEECCcccc---cccCccccCHHHHHhhCCEEEEeCcCCCCccccccc
Confidence 57899999999999999999999999999988777653221 1122345699999999999999999999 5999
Q ss_pred hccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccceeecCCCcccCccceeeeeecccCCcc
Q psy3240 113 LINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTV 192 (274)
Q Consensus 113 li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 192 (274)
+++++.|++||+|++|||+|||++||++||++
T Consensus 188 li~~~~l~~mk~gailIN~aRG~vVde~AL~~------------------------------------------------ 219 (381)
T PRK00257 188 LLDEAFLASLRPGAWLINASRGAVVDNQALRE------------------------------------------------ 219 (381)
T ss_pred cCCHHHHhcCCCCeEEEECCCCcccCHHHHHH------------------------------------------------
Confidence 99999999999999999999999999999999
Q ss_pred ceeeehhhhHHHhcCceeEEEeccCCCCCCCCCCccccCCcEEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC
Q psy3240 193 GIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIINTFHNKPM 268 (274)
Q Consensus 193 ~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~nvi~tPH~~~~t~~~~~~~~~~~~~ni~~~~~g~~~ 268 (274)
+|++|++.+|+||||++||+ .+++|+.. |+++|||+|++|.++..++..++++|+.+|+.+.+.
T Consensus 220 ----------aL~~g~i~~a~LDV~e~EP~-~~~~L~~~-nvi~TPHiAg~s~e~~~r~~~~~~~nl~~~~~~~~~ 283 (381)
T PRK00257 220 ----------ALLSGEDLDAVLDVWEGEPQ-IDLELADL-CTIATPHIAGYSLDGKARGTAQIYQALCRFFGIPAR 283 (381)
T ss_pred ----------HHHhCCCcEEEEeCCCCCCC-CChhhhhC-CEEEcCccccCCHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 99999999999999999996 46788885 999999999999999999999999999999988753
No 24
>KOG0067|consensus
Probab=99.78 E-value=4.6e-19 Score=166.78 Aligned_cols=194 Identities=25% Similarity=0.356 Sum_probs=158.2
Q ss_pred HHHHHhhh--ccchhccCCCCccCC----CCCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhc
Q psy3240 10 YIDVIKYV--STPVSCRGEWKSWAP----NFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKR 83 (274)
Q Consensus 10 ~l~~~r~~--~~~~~~~~~w~~~~~----~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~ 83 (274)
+|+++|.- ..+.-+.|.|..... ...-....+|.++|++|+|..|++++.++++||..++.|++....-..+.+
T Consensus 140 Il~l~rrntw~cq~l~eg~~~q~~~q~~e~a~g~~~~~G~~~g~~g~gr~g~av~~~A~afg~~~ifydp~~~~g~~~~l 219 (435)
T KOG0067|consen 140 ILNLYRRNTWLCQALREGTCTQGLEQVREAACGLARIRGPTLGLIGFGRTGQAVALRAKAFGFVVIFYDPYLIDGIDKSL 219 (435)
T ss_pred HHhhhcccchhhhhhcccceeechhhhhhhhhccccccccceeeeccccccceehhhhhcccceeeeecchhhhhhhhhc
Confidence 45665544 334444566754221 112235688999999999999999999999999966666655443335667
Q ss_pred CCccc-CHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhccccc
Q psy3240 84 GAEHT-NIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKH 162 (274)
Q Consensus 84 g~~~~-sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~ 162 (274)
|.+.+ ++.+++.++|.+++|+-+++.+.++++.-.+++|+.|+.++|++||.++|+++|.+
T Consensus 220 g~~rVytlqd~~~~sd~~S~hc~~~~~~h~lin~~tikqm~qGaflvnta~gglvdekaLaq------------------ 281 (435)
T KOG0067|consen 220 GLQRVYTLQDLLYQSDCVSLHCNLNEHNHELINDFTIKQMRQGAFLVNTARGGLVDEKALAQ------------------ 281 (435)
T ss_pred ccceecccchhhhhccceeeecccCcccccccccccceeecccceEeeecccccCChHHHHh------------------
Confidence 77665 89999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCC-CCCCccccCCcEEEccCCC
Q psy3240 163 LHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPL-PLDSPLLQLDNCVILPHIG 241 (274)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~-~~~~~l~~~~nvi~tPH~~ 241 (274)
||+.|++.+++ |. -...||...||.++|||.+
T Consensus 282 ----------------------------------------aLk~G~i~~aa-------~~~~~~~~l~d~pn~ic~~~ta 314 (435)
T KOG0067|consen 282 ----------------------------------------ALKSGRIRGAA-------PRSFKQGPLKDAPNLICTPHTA 314 (435)
T ss_pred ----------------------------------------hhccCceeccc-------CcccccccccCCCCCCCCcccc
Confidence 99999999987 11 1245788899999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHcCCCC
Q psy3240 242 SAQIETRQEMARITAQNIINTFHNKPM 268 (274)
Q Consensus 242 ~~t~~~~~~~~~~~~~ni~~~~~g~~~ 268 (274)
++++.+..++...++..+++.+.|...
T Consensus 315 ~~~e~~~~e~re~aa~eiR~ai~g~ip 341 (435)
T KOG0067|consen 315 WYSEAASVELREVAALEIRRAITGRIP 341 (435)
T ss_pred hhhHHHHHHHHHHHhhhhhhccCCCCc
Confidence 999999999999999999999988643
No 25
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=99.71 E-value=7.3e-17 Score=157.95 Aligned_cols=103 Identities=17% Similarity=0.259 Sum_probs=87.1
Q ss_pred CCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240 37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN 115 (274)
Q Consensus 37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~ 115 (274)
+..|.||+|+|+|+|.||+.+|++|+++|+++++++....+.. +...|+...+++++++.||+|++|+ .++++|+
T Consensus 249 ~~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~~~leell~~ADIVI~at----Gt~~iI~ 324 (476)
T PTZ00075 249 DVMIAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQVVTLEDVVETADIFVTAT----GNKDIIT 324 (476)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCceeccHHHHHhcCCEEEECC----CcccccC
Confidence 4689999999999999999999999999997777755444332 4456777779999999999999985 4788999
Q ss_pred HHHHhcCCCCcEEEEcCCCchhcHHHHHhhh
Q psy3240 116 RARLESMKPGAILINTSRGQLVDQEALIDFI 146 (274)
Q Consensus 116 ~~~l~~mk~gailINv~RG~iVde~aL~~~L 146 (274)
++.|+.||+|++|||+||+ |++.+++.|
T Consensus 325 ~e~~~~MKpGAiLINvGr~---d~Ei~i~aL 352 (476)
T PTZ00075 325 LEHMRRMKNNAIVGNIGHF---DNEIQVAEL 352 (476)
T ss_pred HHHHhccCCCcEEEEcCCC---chHHhHHHH
Confidence 9999999999999999999 677777733
No 26
>PLN02494 adenosylhomocysteinase
Probab=99.62 E-value=1.8e-15 Score=148.00 Aligned_cols=104 Identities=16% Similarity=0.225 Sum_probs=88.5
Q ss_pred CCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCCh-hHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240 37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKP-EADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN 115 (274)
Q Consensus 37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~-~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~ 115 (274)
+..+.|++|+|+|+|.||+.+|++++++|+++++++....+. .+...|+...+++++++.+|+|+. +..++++++
T Consensus 249 ~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv~leEal~~ADVVI~----tTGt~~vI~ 324 (477)
T PLN02494 249 DVMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVLTLEDVVSEADIFVT----TTGNKDIIM 324 (477)
T ss_pred CCccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeeccHHHHHhhCCEEEE----CCCCccchH
Confidence 345899999999999999999999999999766665544333 355667766789999999999998 446788999
Q ss_pred HHHHhcCCCCcEEEEcCC-CchhcHHHHHh
Q psy3240 116 RARLESMKPGAILINTSR-GQLVDQEALID 144 (274)
Q Consensus 116 ~~~l~~mk~gailINv~R-G~iVde~aL~~ 144 (274)
.+.|+.||+|++|+|+|| +..||+++|.+
T Consensus 325 ~e~L~~MK~GAiLiNvGr~~~eID~~aL~~ 354 (477)
T PLN02494 325 VDHMRKMKNNAIVCNIGHFDNEIDMLGLET 354 (477)
T ss_pred HHHHhcCCCCCEEEEcCCCCCccCHHHHhh
Confidence 999999999999999999 67899999998
No 27
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.62 E-value=8.4e-16 Score=130.58 Aligned_cols=115 Identities=20% Similarity=0.303 Sum_probs=92.3
Q ss_pred CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-CHHHHhcccCEEEEcCCCCcccHHhcc-HHHH
Q psy3240 43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-NIDDLCKQSDFIIITSALTPDTHHLIN-RARL 119 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-sl~ell~~aDvVil~lPlt~~T~~li~-~~~l 119 (274)
++|||||+|.||+.+|++|.+.|.++.+|+++..+.+ ..+.|+..+ ++.|++++||+|++++|..++++.++. .+.+
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~ 81 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENIL 81 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTHG
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHHh
Confidence 6899999999999999999999998878875544433 455676655 899999999999999999888888773 2278
Q ss_pred hcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhh
Q psy3240 120 ESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMV 157 (274)
Q Consensus 120 ~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~ 157 (274)
+.+++|.++||+++..+-....+.+.++++|+.|+|+-
T Consensus 82 ~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdap 119 (163)
T PF03446_consen 82 AGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAP 119 (163)
T ss_dssp GGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEE
T ss_pred hccccceEEEecCCcchhhhhhhhhhhhhccceeeeee
Confidence 88999999999999999999999999999999999953
No 28
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.60 E-value=3.8e-15 Score=137.91 Aligned_cols=114 Identities=18% Similarity=0.252 Sum_probs=102.0
Q ss_pred CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh--HhhcCCccc-CHHHHhcccCEEEEcCCCCcccHHhcc--HH
Q psy3240 43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--ADKRGAEHT-NIDDLCKQSDFIIITSALTPDTHHLIN--RA 117 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a~~~g~~~~-sl~ell~~aDvVil~lPlt~~T~~li~--~~ 117 (274)
.+||+||+|.||.+||++|.+.|..+.+|+++..+.. ....|+... +..|+++.+|+|++|+|..++.+.++. ..
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g 80 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENG 80 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccc
Confidence 4899999999999999999999998777777666533 556688765 789999999999999999999999884 57
Q ss_pred HHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehh
Q psy3240 118 RLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISM 156 (274)
Q Consensus 118 ~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~ 156 (274)
.++.+|||+++||+|+.++...+.+.+.++++|+.|+|.
T Consensus 81 ~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDA 119 (286)
T COG2084 81 LLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDA 119 (286)
T ss_pred hhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEec
Confidence 999999999999999999999999999999999999994
No 29
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=99.58 E-value=4.9e-15 Score=139.09 Aligned_cols=92 Identities=20% Similarity=0.268 Sum_probs=79.6
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhccH
Q psy3240 38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINR 116 (274)
Q Consensus 38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~ 116 (274)
..|+||+|||||+|+||+++|++|+++|+++++++++..... +...|+...+++|++++||+|++|+|+ +++++++++
T Consensus 12 ~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~sl~Eaak~ADVV~llLPd-~~t~~V~~~ 90 (335)
T PRK13403 12 ELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVMSVSEAVRTAQVVQMLLPD-EQQAHVYKA 90 (335)
T ss_pred hhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEECCHHHHHhcCCEEEEeCCC-hHHHHHHHH
Confidence 579999999999999999999999999998888876533322 455677777999999999999999997 678999999
Q ss_pred HHHhcCCCCcEEEE
Q psy3240 117 ARLESMKPGAILIN 130 (274)
Q Consensus 117 ~~l~~mk~gailIN 130 (274)
+.++.||+|++|+-
T Consensus 91 eil~~MK~GaiL~f 104 (335)
T PRK13403 91 EVEENLREGQMLLF 104 (335)
T ss_pred HHHhcCCCCCEEEE
Confidence 99999999998854
No 30
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=99.57 E-value=2e-14 Score=139.04 Aligned_cols=105 Identities=20% Similarity=0.281 Sum_probs=90.1
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhccH
Q psy3240 38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINR 116 (274)
Q Consensus 38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~ 116 (274)
..+.|++|+|+|+|.||+.+|++++++|+++++++..+.+.. +...|+...+++++++.+|+|+.++ .+.++++.
T Consensus 191 ~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~~leeal~~aDVVItaT----G~~~vI~~ 266 (406)
T TIGR00936 191 LLIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKIGDIFITAT----GNKDVIRG 266 (406)
T ss_pred CCCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeCCHHHHHhcCCEEEECC----CCHHHHHH
Confidence 458999999999999999999999999998888765554433 5566776678899999999998854 46889999
Q ss_pred HHHhcCCCCcEEEEcCCCch-hcHHHHHhhh
Q psy3240 117 ARLESMKPGAILINTSRGQL-VDQEALIDFI 146 (274)
Q Consensus 117 ~~l~~mk~gailINv~RG~i-Vde~aL~~~L 146 (274)
+.++.||+|++++|+||+.+ +|.++|.+.+
T Consensus 267 ~~~~~mK~GailiN~G~~~~eId~~aL~~~~ 297 (406)
T TIGR00936 267 EHFENMKDGAIVANIGHFDVEIDVKALEELA 297 (406)
T ss_pred HHHhcCCCCcEEEEECCCCceeCHHHHHHHH
Confidence 99999999999999999998 9999999843
No 31
>PLN02712 arogenate dehydrogenase
Probab=99.51 E-value=9.9e-14 Score=141.76 Aligned_cols=138 Identities=16% Similarity=0.319 Sum_probs=104.7
Q ss_pred CCCccCCCCCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCccc-CHHHHhc-ccCEEEEc
Q psy3240 26 EWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHT-NIDDLCK-QSDFIIIT 103 (274)
Q Consensus 26 ~w~~~~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~-sl~ell~-~aDvVil~ 103 (274)
-|+......++|.++.+++|||||+|.||+.+|+.|+++|.++++|+++.....+.+.|+... ++++++. .+|+|++|
T Consensus 353 ~~~~~~~~~~~~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~~~a~~~Gv~~~~~~~el~~~~aDvVILa 432 (667)
T PLN02712 353 KYEYNAQVSGCVNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYSDEAQKLGVSYFSDADDLCEEHPEVILLC 432 (667)
T ss_pred CCCccchhhhccCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHHHHHHHcCCeEeCCHHHHHhcCCCEEEEC
Confidence 454444556789999999999999999999999999999997777765532222455676544 7888776 58999999
Q ss_pred CCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccceeecCCCcccCccceeee
Q psy3240 104 SALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIF 183 (274)
Q Consensus 104 lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (274)
+|. ..+..++.+-....||+|++++|+++++-...+++.+.+ .+...|++
T Consensus 433 vP~-~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l-----------------------------~~~~~~v~ 482 (667)
T PLN02712 433 TSI-LSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHL-----------------------------PQDFDILC 482 (667)
T ss_pred CCh-HHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhc-----------------------------cCCCceEe
Confidence 994 678888876555579999999999999855555555521 12346999
Q ss_pred eecccCCccc
Q psy3240 184 IHMIMGDTVG 193 (274)
Q Consensus 184 ~~~i~~~~~~ 193 (274)
.||++|.+.+
T Consensus 483 ~HPm~G~e~~ 492 (667)
T PLN02712 483 THPMFGPESG 492 (667)
T ss_pred eCCCCCcccc
Confidence 9999999854
No 32
>PLN02256 arogenate dehydrogenase
Probab=99.48 E-value=6.9e-13 Score=123.96 Aligned_cols=123 Identities=15% Similarity=0.314 Sum_probs=93.0
Q ss_pred CCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCccc-CHHHHh-cccCEEEEcCCCCcccHHhccHH
Q psy3240 40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHT-NIDDLC-KQSDFIIITSALTPDTHHLINRA 117 (274)
Q Consensus 40 L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~-sl~ell-~~aDvVil~lPlt~~T~~li~~~ 117 (274)
-++++|+|||+|.||+++|+.|++.|.++++++++.....+...|+... ++++++ ..+|+|++|+|.. .+..++.+-
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~~~a~~~gv~~~~~~~e~~~~~aDvVilavp~~-~~~~vl~~l 112 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYSDIAAELGVSFFRDPDDFCEEHPDVVLLCTSIL-STEAVLRSL 112 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHHHHHHHcCCeeeCCHHHHhhCCCCEEEEecCHH-HHHHHHHhh
Confidence 3567999999999999999999999987777776643222455666543 777876 4799999999963 667777543
Q ss_pred HHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccceeecCCCcccCccceeeeeecccCCcc
Q psy3240 118 RLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTV 192 (274)
Q Consensus 118 ~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 192 (274)
....++++++++|+++++-+..+++.+.+ .. ...|+.+||++|.+.
T Consensus 113 ~~~~l~~~~iviDv~SvK~~~~~~~~~~l----------------------------~~-~~~~V~~HPmaG~e~ 158 (304)
T PLN02256 113 PLQRLKRSTLFVDVLSVKEFPKNLLLQVL----------------------------PE-EFDILCTHPMFGPES 158 (304)
T ss_pred hhhccCCCCEEEecCCchHHHHHHHHHhC----------------------------CC-CCeEEecCCCCCCCC
Confidence 35668999999999998766666776622 11 236999999999983
No 33
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.47 E-value=2.4e-13 Score=126.06 Aligned_cols=112 Identities=17% Similarity=0.282 Sum_probs=94.6
Q ss_pred CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-CHHHHhcc---cCEEEEcCCCCcccHHhccHH
Q psy3240 43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-NIDDLCKQ---SDFIIITSALTPDTHHLINRA 117 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-sl~ell~~---aDvVil~lPlt~~T~~li~~~ 117 (274)
++|||||+|+||+.+|++|...|.++++|+++..+.. ..+.|+... ++++++++ +|+|++|+|..+.++.+++ +
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~~-~ 79 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVIK-D 79 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHHH-H
Confidence 3799999999999999999999997777765544333 445566554 88888876 6999999998878888884 6
Q ss_pred HHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeeh
Q psy3240 118 RLESMKPGAILINTSRGQLVDQEALIDFIADIRVISIS 155 (274)
Q Consensus 118 ~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D 155 (274)
.++.+++|.++||++++.+.+..++.+.++++|+.|+|
T Consensus 80 i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vd 117 (299)
T PRK12490 80 LYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVD 117 (299)
T ss_pred HhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEe
Confidence 77889999999999999999999999999999999999
No 34
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=99.47 E-value=1.1e-12 Score=121.32 Aligned_cols=139 Identities=22% Similarity=0.296 Sum_probs=103.1
Q ss_pred CCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh---HhhcCCccc---CH-HHHhcccCEEEEcCCCCcccHHhc
Q psy3240 42 NSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE---ADKRGAEHT---NI-DDLCKQSDFIIITSALTPDTHHLI 114 (274)
Q Consensus 42 gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~---a~~~g~~~~---sl-~ell~~aDvVil~lPlt~~T~~li 114 (274)
.++|+|+|+|.||+++|+.++..|..+.++........ +...|+... +. .+.++.+|+|++++|. ..|..++
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi-~~~~~~l 81 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPI-EATEEVL 81 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccH-HHHHHHH
Confidence 47899999999999999999999996644443332222 444666432 33 6778889999999996 4555565
Q ss_pred cHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccceeecCCCcccCccceeeeeecccCCccce
Q psy3240 115 NRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGI 194 (274)
Q Consensus 115 ~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 194 (274)
++..+.+|+|++++|+++-+--..+++.+ ++.+.. .|+++||++|.+
T Consensus 82 -~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~----------------------------~~~~~~-~~vg~HPM~G~~--- 128 (279)
T COG0287 82 -KELAPHLKKGAIVTDVGSVKSSVVEAMEK----------------------------YLPGDV-RFVGGHPMFGPE--- 128 (279)
T ss_pred -HHhcccCCCCCEEEecccccHHHHHHHHH----------------------------hccCCC-eeEecCCCCCCc---
Confidence 34555799999999999988777777766 334455 899999999995
Q ss_pred eeehhhhHHHhcCceeEEEeccCCCCCCCCCCccccCCcEEEccCCCCC
Q psy3240 195 YFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSA 243 (274)
Q Consensus 195 ~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~nvi~tPH~~~~ 243 (274)
.+.+++.+..||+||.-...
T Consensus 129 -----------------------------~~~~lf~~~~~vltp~~~~~ 148 (279)
T COG0287 129 -----------------------------ADAGLFENAVVVLTPSEGTE 148 (279)
T ss_pred -----------------------------ccccccCCCEEEEcCCCCCC
Confidence 23578888999999965443
No 35
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.46 E-value=2.7e-13 Score=125.66 Aligned_cols=114 Identities=12% Similarity=0.207 Sum_probs=95.9
Q ss_pred CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-CHHHHhcccCEEEEcCCCCcccHHhcc--HHH
Q psy3240 43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-NIDDLCKQSDFIIITSALTPDTHHLIN--RAR 118 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-sl~ell~~aDvVil~lPlt~~T~~li~--~~~ 118 (274)
++|||||+|.||.++|+.|...|.++++|+++..+.. ..+.++... ++.+++++||+|++|+|....++.++. ...
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i 81 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGV 81 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccH
Confidence 4799999999999999999999997777765544333 444566544 888999999999999998877787764 346
Q ss_pred HhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehh
Q psy3240 119 LESMKPGAILINTSRGQLVDQEALIDFIADIRVISISM 156 (274)
Q Consensus 119 l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~ 156 (274)
++.+++|.++||++++.+...+.+.+.++++|+.|+|+
T Consensus 82 ~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~lda 119 (296)
T PRK15461 82 CEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMDV 119 (296)
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEc
Confidence 77899999999999999999999999999999999994
No 36
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.45 E-value=4.8e-13 Score=122.86 Aligned_cols=140 Identities=21% Similarity=0.189 Sum_probs=96.6
Q ss_pred CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCc--ccCHHHHhcccCEEEEcCCCCcccHHhccHHHH
Q psy3240 43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAE--HTNIDDLCKQSDFIIITSALTPDTHHLINRARL 119 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~--~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l 119 (274)
++|+|||+|.||+++|+.|+..|.++++|+++..... +...|.. ..+..+.+++||+|++|+|... ...++ ++..
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~~-~~~~~-~~l~ 78 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIGL-LLPPS-EQLI 78 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHHH-HHHHH-HHHH
Confidence 3799999999999999999999998888876544333 4444542 2233357889999999999543 33443 4566
Q ss_pred hcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccceeecCCCcccCccceeeeeecccCCccceeeehh
Q psy3240 120 ESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFS 199 (274)
Q Consensus 120 ~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 199 (274)
+.++++++++|+++.+.-..+++.+ +...|+..||++|.+
T Consensus 79 ~~l~~~~ii~d~~Svk~~~~~~~~~--------------------------------~~~~~v~~HPm~G~~-------- 118 (279)
T PRK07417 79 PALPPEAIVTDVGSVKAPIVEAWEK--------------------------------LHPRFVGSHPMAGTA-------- 118 (279)
T ss_pred HhCCCCcEEEeCcchHHHHHHHHHH--------------------------------hhCCceeeCCcCCCC--------
Confidence 7789999999999876544344333 123489999999987
Q ss_pred hhHHHhcCceeEEEeccCCCCCCCCCCccccCCcEEEccCCCC
Q psy3240 200 ASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGS 242 (274)
Q Consensus 200 ~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~nvi~tPH~~~ 242 (274)
++|... ....|+...++++||+-.+
T Consensus 119 -----~~g~~~-------------a~~~lf~g~~~~l~p~~~~ 143 (279)
T PRK07417 119 -----ESGVEA-------------GQRGLFKNRPWVLTPTENT 143 (279)
T ss_pred -----cchHHH-------------hhHHHhCCCcEEEccCCCC
Confidence 233222 1234667778888887544
No 37
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.45 E-value=3.5e-13 Score=124.07 Aligned_cols=114 Identities=19% Similarity=0.299 Sum_probs=94.8
Q ss_pred CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-CHHHHhcccCEEEEcCCCCcccHHhcc--HHH
Q psy3240 43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-NIDDLCKQSDFIIITSALTPDTHHLIN--RAR 118 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-sl~ell~~aDvVil~lPlt~~T~~li~--~~~ 118 (274)
++|||||+|.||+.+|+.+...|.++++|+++..+.. ..+.++... ++++++++||+|++|+|.+..++.++. .+.
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~ 82 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGI 82 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchH
Confidence 5899999999999999999999997777665443333 445566554 789999999999999998888887763 346
Q ss_pred HhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehh
Q psy3240 119 LESMKPGAILINTSRGQLVDQEALIDFIADIRVISISM 156 (274)
Q Consensus 119 l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~ 156 (274)
++.+++|+++||+++..+...+++.+.++++|+.|+|+
T Consensus 83 ~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~ 120 (296)
T PRK11559 83 IEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDA 120 (296)
T ss_pred hhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEc
Confidence 78899999999999999988999999999888888884
No 38
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.45 E-value=3e-13 Score=124.51 Aligned_cols=112 Identities=17% Similarity=0.255 Sum_probs=91.9
Q ss_pred EEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-CHHHHhcccCEEEEcCCCCcccHHhc-c-HHHH
Q psy3240 44 TVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-NIDDLCKQSDFIIITSALTPDTHHLI-N-RARL 119 (274)
Q Consensus 44 tVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-sl~ell~~aDvVil~lPlt~~T~~li-~-~~~l 119 (274)
+|||||+|.||+.+|+.|...|.++++|+++..+.. ....|.... +..+++++||+|++|+|.++.++.++ . ...+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~ 80 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGII 80 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHh
Confidence 589999999999999999999997777765443333 445566443 78899999999999999888888775 3 3467
Q ss_pred hcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeeh
Q psy3240 120 ESMKPGAILINTSRGQLVDQEALIDFIADIRVISIS 155 (274)
Q Consensus 120 ~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D 155 (274)
+.+++|+++||++++.+.+.+++.+.++++|+.|+|
T Consensus 81 ~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~ 116 (291)
T TIGR01505 81 EGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLD 116 (291)
T ss_pred hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEe
Confidence 788999999999999999999999988887777777
No 39
>PRK06545 prephenate dehydrogenase; Validated
Probab=99.43 E-value=1.5e-12 Score=123.92 Aligned_cols=143 Identities=20% Similarity=0.244 Sum_probs=103.4
Q ss_pred CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-Hhh--cCCcc---cCHHHHhcccCEEEEcCCCCcccHHhccH
Q psy3240 43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADK--RGAEH---TNIDDLCKQSDFIIITSALTPDTHHLINR 116 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~--~g~~~---~sl~ell~~aDvVil~lPlt~~T~~li~~ 116 (274)
++|+|||+|.||+++|+.|+..|..+.+++.+..... ... .++.. .++++++++||+|++|+|.. .+..++.
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~~-~~~~vl~- 78 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPVD-ATAALLA- 78 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCHH-HHHHHHH-
Confidence 5799999999999999999999987777765544333 222 23321 36788899999999999974 5666663
Q ss_pred HHHh-cCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccceeecCCCcccCccceeeeeecccCCcccee
Q psy3240 117 ARLE-SMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIY 195 (274)
Q Consensus 117 ~~l~-~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 195 (274)
+... .++++++++|+++.+.-..+++.+. .++...|+..||++|.+
T Consensus 79 ~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~-----------------------------~~~~~~~ig~HPMaG~e---- 125 (359)
T PRK06545 79 ELADLELKPGVIVTDVGSVKGAILAEAEAL-----------------------------LGDLIRFVGGHPMAGSH---- 125 (359)
T ss_pred HHhhcCCCCCcEEEeCccccHHHHHHHHHh-----------------------------cCCCCeEEeeCCcCcCc----
Confidence 3333 4789999999999876555555541 13456799999999998
Q ss_pred eehhhhHHHhcCceeEEEeccCCCCCCCCCCccccCCcEEEccCCCC
Q psy3240 196 FIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGS 242 (274)
Q Consensus 196 ~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~nvi~tPH~~~ 242 (274)
++|.-. .+..|+....+++||+-..
T Consensus 126 ---------~sG~~a-------------a~~~lf~g~~~il~~~~~~ 150 (359)
T PRK06545 126 ---------KSGVAA-------------ARADLFENAPWVLTPDDHT 150 (359)
T ss_pred ---------hhhHHH-------------hcHHHHCCCcEEEecCCCC
Confidence 555333 2356888888999997543
No 40
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.42 E-value=9.6e-13 Score=122.10 Aligned_cols=113 Identities=17% Similarity=0.294 Sum_probs=95.1
Q ss_pred CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-CHHHHhcc---cCEEEEcCCCCcccHHhccHH
Q psy3240 43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-NIDDLCKQ---SDFIIITSALTPDTHHLINRA 117 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-sl~ell~~---aDvVil~lPlt~~T~~li~~~ 117 (274)
++|||||+|.||+.+|++|...|.++++|+++..+.. ..+.|+... +++|+++. +|+|++++|..+.++.+++ .
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~~-~ 79 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATID-E 79 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHHH-H
Confidence 3799999999999999999999997777766544333 445677655 78888876 6999999998878888874 6
Q ss_pred HHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehh
Q psy3240 118 RLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISM 156 (274)
Q Consensus 118 ~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~ 156 (274)
.++.+++|.++||++++.......+.+.++++|+.|+|+
T Consensus 80 l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~da 118 (301)
T PRK09599 80 LAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDV 118 (301)
T ss_pred HHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeC
Confidence 778899999999999999999999999999999999994
No 41
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=99.39 E-value=1.7e-12 Score=120.36 Aligned_cols=112 Identities=15% Similarity=0.186 Sum_probs=92.1
Q ss_pred EEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCccc-CHHHHhcccCEEEEcCCCCcccHHhcc--HHHHh
Q psy3240 44 TVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHT-NIDDLCKQSDFIIITSALTPDTHHLIN--RARLE 120 (274)
Q Consensus 44 tVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~-sl~ell~~aDvVil~lPlt~~T~~li~--~~~l~ 120 (274)
+|||||+|+||+.+|++|...|.++.+|+...........|+... +..+++++||+|++|+|..++.+.++. ...++
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~~ 81 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPVADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCTK 81 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHhHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchhc
Confidence 799999999999999999999997777765433222445566544 788999999999999998888888763 24677
Q ss_pred cCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeeh
Q psy3240 121 SMKPGAILINTSRGQLVDQEALIDFIADIRVISIS 155 (274)
Q Consensus 121 ~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D 155 (274)
.+++|.++||+++..+-....+.+.++++|+.|+|
T Consensus 82 ~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vd 116 (292)
T PRK15059 82 ASLKGKTIVDMSSISPIETKRFARQVNELGGDYLD 116 (292)
T ss_pred cCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 78999999999999999999999999888877777
No 42
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.37 E-value=1.8e-12 Score=128.34 Aligned_cols=112 Identities=18% Similarity=0.265 Sum_probs=94.5
Q ss_pred EEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-Hhh----cCCc----ccCHHHHhcc---cCEEEEcCCCCcccH
Q psy3240 44 TVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADK----RGAE----HTNIDDLCKQ---SDFIIITSALTPDTH 111 (274)
Q Consensus 44 tVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~----~g~~----~~sl~ell~~---aDvVil~lPlt~~T~ 111 (274)
+||+||+|.||+.||++|...|.++.+|++...+.+ ..+ .|+. ..+++|+++. +|+|++|+|..+.++
T Consensus 8 ~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV~ 87 (493)
T PLN02350 8 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAPVD 87 (493)
T ss_pred CEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHHHH
Confidence 699999999999999999999997777655444333 222 1442 2378888875 999999999999999
Q ss_pred HhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehh
Q psy3240 112 HLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISM 156 (274)
Q Consensus 112 ~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~ 156 (274)
.++ ...++.+++|.++||+|+...-+...+.+.++++|+.|+|+
T Consensus 88 ~Vi-~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~flda 131 (493)
T PLN02350 88 QTI-KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGM 131 (493)
T ss_pred HHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeC
Confidence 998 57889999999999999999999999999999999999994
No 43
>PRK08818 prephenate dehydrogenase; Provisional
Probab=99.36 E-value=9.4e-12 Score=119.30 Aligned_cols=110 Identities=16% Similarity=0.243 Sum_probs=80.5
Q ss_pred CCCCEEEEEcc-ChHHHHHHHHHcc-CCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhccH-
Q psy3240 40 LQNSTVGIVGC-GRIGLSVLEKLIP-YKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINR- 116 (274)
Q Consensus 40 L~gktVGIIGl-G~IG~~iA~~L~~-~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~- 116 (274)
+...+|+|||+ |.||+++|+.|+. +|.+++++++... ...++++.+++||+|++|+|.. .+..++.+
T Consensus 2 ~~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~---------~~~~~~~~v~~aDlVilavPv~-~~~~~l~~l 71 (370)
T PRK08818 2 IAQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP---------GSLDPATLLQRADVLIFSAPIR-HTAALIEEY 71 (370)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc---------ccCCHHHHhcCCCEEEEeCCHH-HHHHHHHHH
Confidence 45689999999 9999999999985 5887777765311 1236788899999999999964 44555532
Q ss_pred -HHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccceeecCCCcccCccceeeeeecccCCc
Q psy3240 117 -ARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDT 191 (274)
Q Consensus 117 -~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 191 (274)
.....++++++++|+++-+..-.+++.+ +...|+++||++|++
T Consensus 72 ~~~~~~l~~~~iVtDVgSvK~~i~~~~~~--------------------------------~~~~fVG~HPMaG~E 115 (370)
T PRK08818 72 VALAGGRAAGQLWLDVTSIKQAPVAAMLA--------------------------------SQAEVVGLHPMTAPP 115 (370)
T ss_pred hhhhcCCCCCeEEEECCCCcHHHHHHHHh--------------------------------cCCCEEeeCCCCCCC
Confidence 1123489999999999977433334333 123599999999997
No 44
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.34 E-value=1.9e-11 Score=113.53 Aligned_cols=145 Identities=18% Similarity=0.213 Sum_probs=98.9
Q ss_pred CCCEEEEEccChHHHHHHHHHccCCC--eEEEEeCCCCChh-HhhcCCc---ccCHHHHhcccCEEEEcCCCCcccHHhc
Q psy3240 41 QNSTVGIVGCGRIGLSVLEKLIPYKV--SKFLYTSRSKKPE-ADKRGAE---HTNIDDLCKQSDFIIITSALTPDTHHLI 114 (274)
Q Consensus 41 ~gktVGIIGlG~IG~~iA~~L~~~G~--~vv~~~~r~~~~~-a~~~g~~---~~sl~ell~~aDvVil~lPlt~~T~~li 114 (274)
..++|+|||+|.||..+|+.|+..|. ++++|+++..... +...|.. ..++++.+++||+|++|+|.. .+..++
T Consensus 5 ~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~-~~~~v~ 83 (307)
T PRK07502 5 LFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVG-ASGAVA 83 (307)
T ss_pred CCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHH-HHHHHH
Confidence 34789999999999999999998884 5666665443333 4445542 236788899999999999963 334443
Q ss_pred cHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccceeecCCCcccCccceeeeeecccCCccce
Q psy3240 115 NRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGI 194 (274)
Q Consensus 115 ~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 194 (274)
.+..+.+++++++++++..+.-..+++.+. +. .+..|++.||++|.+
T Consensus 84 -~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~----------------------------~~-~~~~~v~~hPm~g~e--- 130 (307)
T PRK07502 84 -AEIAPHLKPGAIVTDVGSVKASVIAAMAPH----------------------------LP-EGVHFIPGHPLAGTE--- 130 (307)
T ss_pred -HHHHhhCCCCCEEEeCccchHHHHHHHHHh----------------------------CC-CCCeEEeCCCCCCCc---
Confidence 345567899999999988654333344331 11 234699999999987
Q ss_pred eeehhhhHHHhcCceeEEEeccCCCCCCCCCCccccCCcEEEccCCCC
Q psy3240 195 YFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGS 242 (274)
Q Consensus 195 ~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~nvi~tPH~~~ 242 (274)
.+|.-. ....|+...++++||+.+.
T Consensus 131 ----------~~G~~~-------------a~~~l~~g~~~~l~~~~~~ 155 (307)
T PRK07502 131 ----------HSGPDA-------------GFAELFENRWCILTPPEGT 155 (307)
T ss_pred ----------ccchhh-------------cCHHHHCCCeEEEeCCCCC
Confidence 222221 2346777888889986544
No 45
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=99.34 E-value=3.4e-12 Score=109.18 Aligned_cols=103 Identities=20% Similarity=0.326 Sum_probs=76.3
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhccH
Q psy3240 38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINR 116 (274)
Q Consensus 38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~ 116 (274)
..+.||++.|+|||.+|+.+|+.|+++|+++++++..+-+.. +...|++..+++|+++++|+++.++. .+.++..
T Consensus 19 ~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~~~~~a~~~adi~vtaTG----~~~vi~~ 94 (162)
T PF00670_consen 19 LMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVMTLEEALRDADIFVTATG----NKDVITG 94 (162)
T ss_dssp S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE-HHHHTTT-SEEEE-SS----SSSSB-H
T ss_pred eeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEecCHHHHHhhCCEEEECCC----CccccCH
Confidence 568999999999999999999999999998888776554333 66778888899999999999998764 3567889
Q ss_pred HHHhcCCCCcEEEEcCCCch-hcHHHHHh
Q psy3240 117 ARLESMKPGAILINTSRGQL-VDQEALID 144 (274)
Q Consensus 117 ~~l~~mk~gailINv~RG~i-Vde~aL~~ 144 (274)
+.|++||+|+++.|++.-.. +|.+.|.+
T Consensus 95 e~~~~mkdgail~n~Gh~d~Eid~~~L~~ 123 (162)
T PF00670_consen 95 EHFRQMKDGAILANAGHFDVEIDVDALEA 123 (162)
T ss_dssp HHHHHS-TTEEEEESSSSTTSBTHHHHHT
T ss_pred HHHHHhcCCeEEeccCcCceeEeeccccc
Confidence 99999999999999998655 47777666
No 46
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.33 E-value=2.8e-11 Score=118.34 Aligned_cols=118 Identities=21% Similarity=0.290 Sum_probs=89.9
Q ss_pred CEEEEEc-cChHHHHHHHHHccCCCeEEEEeCCCCCh-h-HhhcCCccc-CHHHHhcccCEEEEcCCCCcccHHhccHHH
Q psy3240 43 STVGIVG-CGRIGLSVLEKLIPYKVSKFLYTSRSKKP-E-ADKRGAEHT-NIDDLCKQSDFIIITSALTPDTHHLINRAR 118 (274)
Q Consensus 43 ktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~r~~~~-~-a~~~g~~~~-sl~ell~~aDvVil~lPlt~~T~~li~~~~ 118 (274)
++|+||| +|.||+++|+.|+..|.++++++++.... . +.+.|+... +..+.+++||+|++|+|. ..+..++ ++.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~-~~~~~vl-~~l 78 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPI-NVTEDVI-KEV 78 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCH-HHHHHHH-HHH
Confidence 4799997 99999999999999999777777554432 2 445566544 788899999999999996 3455665 456
Q ss_pred HhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccceeecCCCcccCccceeeeeecccCCc
Q psy3240 119 LESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDT 191 (274)
Q Consensus 119 l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 191 (274)
.+.++++++++|+++.+....+++.+.+ .++..|+..||++|..
T Consensus 79 ~~~l~~~~iViDvsSvK~~~~~~l~~~~-----------------------------~~~~~~V~~HPmaGp~ 122 (437)
T PRK08655 79 APHVKEGSLLMDVTSVKERPVEAMEEYA-----------------------------PEGVEILPTHPMFGPR 122 (437)
T ss_pred HhhCCCCCEEEEcccccHHHHHHHHHhc-----------------------------CCCCEEEEcCCCCCCC
Confidence 6778999999999997766666666621 1245799999999864
No 47
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=99.32 E-value=5.1e-12 Score=117.22 Aligned_cols=98 Identities=16% Similarity=0.245 Sum_probs=77.2
Q ss_pred CCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc---CHHHHhcccCEEEEcCCCCcccHH
Q psy3240 37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT---NIDDLCKQSDFIIITSALTPDTHH 112 (274)
Q Consensus 37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~---sl~ell~~aDvVil~lPlt~~T~~ 112 (274)
+.+++|++++|+|+|.||+.+|+.|+++|+++++++++..+.. +...+.... +++++++++|+|++|+|.+
T Consensus 146 ~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~----- 220 (287)
T TIGR02853 146 DFTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPAL----- 220 (287)
T ss_pred CCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCChH-----
Confidence 4689999999999999999999999999997666655433222 333454433 5778899999999999973
Q ss_pred hccHHHHhcCCCCcEEEEcCCCc-hhcH
Q psy3240 113 LINRARLESMKPGAILINTSRGQ-LVDQ 139 (274)
Q Consensus 113 li~~~~l~~mk~gailINv~RG~-iVde 139 (274)
+++++.++.|++++++||++... -+|.
T Consensus 221 ii~~~~l~~~k~~aliIDlas~Pg~tdf 248 (287)
T TIGR02853 221 VLTADVLSKLPKHAVIIDLASKPGGTDF 248 (287)
T ss_pred HhCHHHHhcCCCCeEEEEeCcCCCCCCH
Confidence 67888999999999999999843 2455
No 48
>KOG0409|consensus
Probab=99.31 E-value=7.4e-12 Score=115.92 Aligned_cols=117 Identities=16% Similarity=0.257 Sum_probs=103.1
Q ss_pred CCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-CHHHHhcccCEEEEcCCCCcccHHhcc--
Q psy3240 40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-NIDDLCKQSDFIIITSALTPDTHHLIN-- 115 (274)
Q Consensus 40 L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-sl~ell~~aDvVil~lPlt~~T~~li~-- 115 (274)
-+.++||+||+|+||..|+..|.+.|.++++|++..++.. ..+.|++.. ++.|+.+.||+|+.++|.....+.++.
T Consensus 33 ~s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~ 112 (327)
T KOG0409|consen 33 PSKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLGK 112 (327)
T ss_pred cccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCC
Confidence 4678999999999999999999999998888887666655 677788775 899999999999999999999998873
Q ss_pred HHHHhcCCCCcEE-EEcCCCchhcHHHHHhhhhhhhheeehh
Q psy3240 116 RARLESMKPGAIL-INTSRGQLVDQEALIDFIADIRVISISM 156 (274)
Q Consensus 116 ~~~l~~mk~gail-INv~RG~iVde~aL~~~L~~~~i~~~D~ 156 (274)
...|+.+++|... ||+++.++.-...|.+.++.+++.++|.
T Consensus 113 ~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~~vDA 154 (327)
T KOG0409|consen 113 SGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGRFVDA 154 (327)
T ss_pred CcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCeEEec
Confidence 4578888888877 9999999999999999999999999994
No 49
>PLN02712 arogenate dehydrogenase
Probab=99.31 E-value=1e-11 Score=127.10 Aligned_cols=124 Identities=17% Similarity=0.318 Sum_probs=92.0
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCccc-CHHHHh-cccCEEEEcCCCCcccHHhcc
Q psy3240 38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHT-NIDDLC-KQSDFIIITSALTPDTHHLIN 115 (274)
Q Consensus 38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~-sl~ell-~~aDvVil~lPlt~~T~~li~ 115 (274)
.+-+.++|||||+|+||+.+|+.|+.+|.++++++++.....+.+.|+... ++++++ .++|+|++|+|. ..+..++.
T Consensus 48 ~~~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~-~~~~~vl~ 126 (667)
T PLN02712 48 DNTTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHSLAARSLGVSFFLDPHDLCERHPDVILLCTSI-ISTENVLK 126 (667)
T ss_pred ccCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcCCEEeCCHHHHhhcCCCEEEEcCCH-HHHHHHHH
Confidence 345567999999999999999999999997777766533222556676554 788866 569999999995 46777876
Q ss_pred HHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccceeecCCCcccCccceeeeeecccCCc
Q psy3240 116 RARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDT 191 (274)
Q Consensus 116 ~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 191 (274)
.-.+..++++++|+|+++.+..-.+++.+ .+.+ ...|+++||++|.+
T Consensus 127 ~l~~~~l~~g~iVvDv~SvK~~~~~~l~~----------------------------~l~~-~~~~v~~HPMaG~e 173 (667)
T PLN02712 127 SLPLQRLKRNTLFVDVLSVKEFAKNLLLD----------------------------YLPE-DFDIICSHPMFGPQ 173 (667)
T ss_pred hhhhhcCCCCeEEEECCCCcHHHHHHHHH----------------------------hcCC-CCeEEeeCCcCCCc
Confidence 54446789999999998776433444444 1222 23599999999998
No 50
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=99.30 E-value=1.5e-11 Score=119.64 Aligned_cols=103 Identities=19% Similarity=0.280 Sum_probs=86.0
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhccH
Q psy3240 38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINR 116 (274)
Q Consensus 38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~ 116 (274)
..+.|++|+|+|+|.||+.+|++|+++|+++++++....+.. +...|+...+++++++.+|+|+.++ .+.++++.
T Consensus 208 ~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v~~l~eal~~aDVVI~aT----G~~~vI~~ 283 (425)
T PRK05476 208 VLIAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRVMTMEEAAELGDIFVTAT----GNKDVITA 283 (425)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEecCHHHHHhCCCEEEECC----CCHHHHHH
Confidence 458999999999999999999999999998777765544433 4455776668999999999999865 45778999
Q ss_pred HHHhcCCCCcEEEEcCCCch-hcHHHHHh
Q psy3240 117 ARLESMKPGAILINTSRGQL-VDQEALID 144 (274)
Q Consensus 117 ~~l~~mk~gailINv~RG~i-Vde~aL~~ 144 (274)
+.++.||+|++++|+|+... +|.++|.+
T Consensus 284 ~~~~~mK~GailiNvG~~d~Eid~~~L~~ 312 (425)
T PRK05476 284 EHMEAMKDGAILANIGHFDNEIDVAALEE 312 (425)
T ss_pred HHHhcCCCCCEEEEcCCCCCccChHHHhh
Confidence 99999999999999999876 67777765
No 51
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=99.29 E-value=1.8e-11 Score=113.55 Aligned_cols=113 Identities=12% Similarity=0.217 Sum_probs=90.9
Q ss_pred CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCcc-cCHHHH---hcccCEEEEcCCCCcccHHhccHH
Q psy3240 43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEH-TNIDDL---CKQSDFIIITSALTPDTHHLINRA 117 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~-~sl~el---l~~aDvVil~lPlt~~T~~li~~~ 117 (274)
++|||||+|.||..+|++|...|.++++|+++..+.+ ..+.+... .+++++ ++++|+|++++|.. .++.++ ++
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~~~v~-~~ 78 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-IVDAVL-EE 78 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-HHHHHH-HH
Confidence 3799999999999999999999997777765544333 34445433 355554 45689999999987 788887 46
Q ss_pred HHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhh
Q psy3240 118 RLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMV 157 (274)
Q Consensus 118 ~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~ 157 (274)
..+.+++|.++||++.+...+...+.+.++++|+.|+|+-
T Consensus 79 l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~ 118 (298)
T TIGR00872 79 LAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCG 118 (298)
T ss_pred HHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecC
Confidence 7788999999999999998999999999999999999954
No 52
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.28 E-value=1.3e-11 Score=116.60 Aligned_cols=95 Identities=21% Similarity=0.236 Sum_probs=78.4
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh--HhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240 38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--ADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN 115 (274)
Q Consensus 38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~ 115 (274)
..|+|++|||||+|+||+++|+.|+.+|+++++++++..+.. +.+.|+...+.++++++||+|++++|.+.. ..+++
T Consensus 13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~s~~eaa~~ADVVvLaVPd~~~-~~V~~ 91 (330)
T PRK05479 13 SLIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVLTVAEAAKWADVIMILLPDEVQ-AEVYE 91 (330)
T ss_pred hhhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeCCHHHHHhcCCEEEEcCCHHHH-HHHHH
Confidence 568999999999999999999999999997777766544333 455677767999999999999999997655 77887
Q ss_pred HHHHhcCCCCcEEEEcCCC
Q psy3240 116 RARLESMKPGAILINTSRG 134 (274)
Q Consensus 116 ~~~l~~mk~gailINv~RG 134 (274)
++.++.|++|++| -.+.|
T Consensus 92 ~~I~~~Lk~g~iL-~~a~G 109 (330)
T PRK05479 92 EEIEPNLKEGAAL-AFAHG 109 (330)
T ss_pred HHHHhcCCCCCEE-EECCC
Confidence 7888999999988 44445
No 53
>PLN02858 fructose-bisphosphate aldolase
Probab=99.27 E-value=1.4e-11 Score=134.32 Aligned_cols=116 Identities=10% Similarity=0.196 Sum_probs=100.0
Q ss_pred CCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-CHHHHhcccCEEEEcCCCCcccHHhc--cH
Q psy3240 41 QNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-NIDDLCKQSDFIIITSALTPDTHHLI--NR 116 (274)
Q Consensus 41 ~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-sl~ell~~aDvVil~lPlt~~T~~li--~~ 116 (274)
+.++||+||+|.||..||++|...|..+.+|+++..+.. ..+.|+..+ ++.|+.++||+|++|+|..+.++.++ ..
T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~ 82 (1378)
T PLN02858 3 SAGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDE 82 (1378)
T ss_pred CCCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchh
Confidence 467899999999999999999999997777765444333 456677655 89999999999999999999999887 35
Q ss_pred HHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhh--heeehh
Q psy3240 117 ARLESMKPGAILINTSRGQLVDQEALIDFIADIR--VISISM 156 (274)
Q Consensus 117 ~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~--i~~~D~ 156 (274)
..++.+++|.++||+|+..+-..+.+.+.++++| +.|+|+
T Consensus 83 g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDa 124 (1378)
T PLN02858 83 GAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDA 124 (1378)
T ss_pred hHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEc
Confidence 6888899999999999999999999999999999 999994
No 54
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=99.27 E-value=1.4e-11 Score=113.57 Aligned_cols=110 Identities=15% Similarity=0.187 Sum_probs=91.5
Q ss_pred EEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-CHHHHhcccCEEEEcCCCCcccHHhcc--HHHHhcC
Q psy3240 47 IVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-NIDDLCKQSDFIIITSALTPDTHHLIN--RARLESM 122 (274)
Q Consensus 47 IIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-sl~ell~~aDvVil~lPlt~~T~~li~--~~~l~~m 122 (274)
|||+|.||.++|++|...|.++++|+++..+.. ..+.|+... ++.+++++||+|++|+|....++.++. .+.++.+
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~ 80 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKV 80 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcC
Confidence 689999999999999999997777765544333 445566544 889999999999999998777787773 4677789
Q ss_pred CCCcEEEEcCCCchhcHHHHHhhhhhhhheeehh
Q psy3240 123 KPGAILINTSRGQLVDQEALIDFIADIRVISISM 156 (274)
Q Consensus 123 k~gailINv~RG~iVde~aL~~~L~~~~i~~~D~ 156 (274)
++|.++||+++..+-..+.+.+.++++|+.|+|+
T Consensus 81 ~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vda 114 (288)
T TIGR01692 81 AKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDA 114 (288)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEC
Confidence 9999999999988888889999999999999994
No 55
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.25 E-value=2.3e-11 Score=119.89 Aligned_cols=115 Identities=16% Similarity=0.255 Sum_probs=95.3
Q ss_pred CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-Hhhc----CCc---ccCHHHHhc---ccCEEEEcCCCCcccH
Q psy3240 43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKR----GAE---HTNIDDLCK---QSDFIIITSALTPDTH 111 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~----g~~---~~sl~ell~---~aDvVil~lPlt~~T~ 111 (274)
.+|||||+|.||+.+|++|...|.++.+|+++..+.+ ..+. |.. ..+++|+++ ++|+|++++|..+.++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~ 81 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVD 81 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHH
Confidence 4799999999999999999999997777765554433 2221 422 238888886 5899999999999999
Q ss_pred HhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhc
Q psy3240 112 HLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVT 158 (274)
Q Consensus 112 ~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~ 158 (274)
.++ .+.++.+++|.++||++.+...|...+.+.++++|+.|+|+-.
T Consensus 82 ~vi-~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapV 127 (470)
T PTZ00142 82 ETI-DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGV 127 (470)
T ss_pred HHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCC
Confidence 998 4678889999999999999999999999999999999999543
No 56
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.23 E-value=1.2e-10 Score=106.68 Aligned_cols=89 Identities=18% Similarity=0.277 Sum_probs=63.1
Q ss_pred CEEEEEccChHHHHHHHHHccCCC--eEEEEeCCCCChh-HhhcCCc--ccCHHHHhcccCEEEEcCCCCcccHHhccHH
Q psy3240 43 STVGIVGCGRIGLSVLEKLIPYKV--SKFLYTSRSKKPE-ADKRGAE--HTNIDDLCKQSDFIIITSALTPDTHHLINRA 117 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~~L~~~G~--~vv~~~~r~~~~~-a~~~g~~--~~sl~ell~~aDvVil~lPlt~~T~~li~~~ 117 (274)
++|+|||+|.||+++|+.|+..|. ++++|+++..... +.+.|+. ..+++++. +||+|++|+|... +..++ .+
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~~~-~~~~~-~~ 77 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPVDA-IIEIL-PK 77 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcHHH-HHHHH-HH
Confidence 379999999999999999998774 4555555433322 4455653 23677765 4999999999643 44444 34
Q ss_pred HHhcCCCCcEEEEcCCCc
Q psy3240 118 RLESMKPGAILINTSRGQ 135 (274)
Q Consensus 118 ~l~~mk~gailINv~RG~ 135 (274)
..+ ++++++++++++.+
T Consensus 78 l~~-l~~~~iv~d~gs~k 94 (275)
T PRK08507 78 LLD-IKENTTIIDLGSTK 94 (275)
T ss_pred Hhc-cCCCCEEEECccch
Confidence 556 88999999987744
No 57
>PLN02858 fructose-bisphosphate aldolase
Probab=99.22 E-value=4e-11 Score=130.89 Aligned_cols=115 Identities=14% Similarity=0.201 Sum_probs=97.6
Q ss_pred CCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCcc-cCHHHHhcccCEEEEcCCCCcccHHhc--cHH
Q psy3240 42 NSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEH-TNIDDLCKQSDFIIITSALTPDTHHLI--NRA 117 (274)
Q Consensus 42 gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~-~sl~ell~~aDvVil~lPlt~~T~~li--~~~ 117 (274)
.++|||||+|.||..||++|...|.++++|+++..+.. ....|+.. .++.+++++||+|++|+|..++++.++ ...
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g 403 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLG 403 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhh
Confidence 48899999999999999999999997777765443333 44556544 488999999999999999988999887 456
Q ss_pred HHhcCCCCcEEEEcCCCchhcHHHHHhhhhh--hhheeehh
Q psy3240 118 RLESMKPGAILINTSRGQLVDQEALIDFIAD--IRVISISM 156 (274)
Q Consensus 118 ~l~~mk~gailINv~RG~iVde~aL~~~L~~--~~i~~~D~ 156 (274)
.++.+++|.++||+++..+-..+.+.+.+++ +|+.|+|+
T Consensus 404 ~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lDA 444 (1378)
T PLN02858 404 AVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVDA 444 (1378)
T ss_pred HHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEc
Confidence 7888999999999999999999999999998 89999993
No 58
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=99.21 E-value=1e-10 Score=113.56 Aligned_cols=104 Identities=19% Similarity=0.293 Sum_probs=87.2
Q ss_pred CCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240 37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN 115 (274)
Q Consensus 37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~ 115 (274)
+..+.|++|+|+|+|.||+.+|+.++++|+++++++....+.. +...|+...+++++++.+|+|+.+. .+.++++
T Consensus 197 ~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~~~~e~v~~aDVVI~at----G~~~~i~ 272 (413)
T cd00401 197 DVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVMTMEEAVKEGDIFVTTT----GNKDIIT 272 (413)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEccHHHHHcCCCEEEECC----CCHHHHH
Confidence 4568999999999999999999999999998777766555444 6778887677889999999999865 3567888
Q ss_pred HHHHhcCCCCcEEEEcCCCch-hcHHHHHh
Q psy3240 116 RARLESMKPGAILINTSRGQL-VDQEALID 144 (274)
Q Consensus 116 ~~~l~~mk~gailINv~RG~i-Vde~aL~~ 144 (274)
.+.+..||+|++++|+|+..+ +|..+|..
T Consensus 273 ~~~l~~mk~GgilvnvG~~~~eId~~~L~~ 302 (413)
T cd00401 273 GEHFEQMKDGAIVCNIGHFDVEIDVKGLKE 302 (413)
T ss_pred HHHHhcCCCCcEEEEeCCCCCccCHHHHHh
Confidence 888999999999999999876 67777665
No 59
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=99.20 E-value=6e-11 Score=116.96 Aligned_cols=114 Identities=13% Similarity=0.230 Sum_probs=92.3
Q ss_pred EEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-Hhhc---C--Ccc-cCHHHHh---cccCEEEEcCCCCcccHHh
Q psy3240 44 TVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKR---G--AEH-TNIDDLC---KQSDFIIITSALTPDTHHL 113 (274)
Q Consensus 44 tVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~---g--~~~-~sl~ell---~~aDvVil~lPlt~~T~~l 113 (274)
.|||||+|.||+.||++|...|.++++|+++..+.+ ..+. + +.. .++++++ +++|+|++++|..+.+..+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~V 80 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAV 80 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHH
Confidence 389999999999999999999998777766554443 2222 2 322 3677765 4689999999998888888
Q ss_pred ccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhc
Q psy3240 114 INRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVT 158 (274)
Q Consensus 114 i~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~ 158 (274)
+ .+.++.+++|.++||++.+...+.....+.++++|+.|+|+-.
T Consensus 81 i-~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapV 124 (467)
T TIGR00873 81 I-NQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGV 124 (467)
T ss_pred H-HHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCC
Confidence 8 4677889999999999999999999999999999999999543
No 60
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=99.19 E-value=4.5e-11 Score=114.56 Aligned_cols=131 Identities=18% Similarity=0.282 Sum_probs=101.0
Q ss_pred CCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-H-hhcCCc----c---cCHHHHhcccCEEEEcCCCC-c
Q psy3240 39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-A-DKRGAE----H---TNIDDLCKQSDFIIITSALT-P 108 (274)
Q Consensus 39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a-~~~g~~----~---~sl~ell~~aDvVil~lPlt-~ 108 (274)
.+.+++|.|+|.|.+|+.+++.++.+|+++++++++..+.+ . ...+.. . .++.+.++++|+|+.+++.+ .
T Consensus 164 ~l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~ 243 (370)
T TIGR00518 164 GVEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGA 243 (370)
T ss_pred CCCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCC
Confidence 36788999999999999999999999997777766543322 2 223321 1 24677889999999998652 2
Q ss_pred ccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccceeecCCCcccCccceeeeeeccc
Q psy3240 109 DTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIM 188 (274)
Q Consensus 109 ~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 188 (274)
.+..+++++.++.||+++++||++ +|..-..+ +++.+|+|+|++..++..++++.++|
T Consensus 244 ~~p~lit~~~l~~mk~g~vIvDva----~d~GG~~e------------------~~~~t~~d~p~~~~~Gv~~~~v~nlP 301 (370)
T TIGR00518 244 KAPKLVSNSLVAQMKPGAVIVDVA----IDQGGCVE------------------TSRPTTHDQPTYAVHDVVHYCVANMP 301 (370)
T ss_pred CCCcCcCHHHHhcCCCCCEEEEEe----cCCCCCcc------------------CCcCCCCCCCEEEECCeEEEEeCCcc
Confidence 345678999999999999999998 23222233 56789999999999999999999999
Q ss_pred CCc
Q psy3240 189 GDT 191 (274)
Q Consensus 189 ~~~ 191 (274)
|.-
T Consensus 302 ~~~ 304 (370)
T TIGR00518 302 GAV 304 (370)
T ss_pred ccc
Confidence 974
No 61
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.18 E-value=2.6e-10 Score=117.48 Aligned_cols=144 Identities=17% Similarity=0.179 Sum_probs=102.8
Q ss_pred CEEEEEccChHHHHHHHHHccCC--CeEEEEeCCCCChh-HhhcCCc---ccCHHHHhcccCEEEEcCCCCcccHHhccH
Q psy3240 43 STVGIVGCGRIGLSVLEKLIPYK--VSKFLYTSRSKKPE-ADKRGAE---HTNIDDLCKQSDFIIITSALTPDTHHLINR 116 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~~L~~~G--~~vv~~~~r~~~~~-a~~~g~~---~~sl~ell~~aDvVil~lPlt~~T~~li~~ 116 (274)
++|+|||+|.||+++|+.++..| .++++++++..+.. +.+.|+. ..+++++++++|+|++++|.. ....++.
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~-~~~~vl~- 81 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVL-AMEKVLA- 81 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHH-HHHHHHH-
Confidence 78999999999999999999888 35666665544433 4455653 236888899999999999964 4444442
Q ss_pred HHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccceeecCCCcccCccceeeeeecccCCccceee
Q psy3240 117 ARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYF 196 (274)
Q Consensus 117 ~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 196 (274)
+..+.++++++++|+++.+....+++.+. +.+.+..|++.||++|.+
T Consensus 82 ~l~~~~~~~~ii~d~~svk~~~~~~l~~~----------------------------~~~~~~r~~~~hPm~G~~----- 128 (735)
T PRK14806 82 DLKPLLSEHAIVTDVGSTKGNVVDAARAV----------------------------FGELPAGFVPGHPIAGSE----- 128 (735)
T ss_pred HHHHhcCCCcEEEEcCCCchHHHHHHHHh----------------------------ccccCCeEEecCCcCcCC-----
Confidence 44456788999999998664445555551 222356799999999997
Q ss_pred ehhhhHHHhcCceeEEEeccCCCCCCCCCCccccCCcEEEccCCCC
Q psy3240 197 IFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGS 242 (274)
Q Consensus 197 ~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~nvi~tPH~~~ 242 (274)
.+|... .+..|+...+++++|+...
T Consensus 129 --------~~g~~~-------------a~~~l~~~~~~~~~~~~~~ 153 (735)
T PRK14806 129 --------KSGVHA-------------ANADLFRNHKVILTPLAET 153 (735)
T ss_pred --------cchhhh-------------hhhHHhCCCeEEEECCCCC
Confidence 333322 3457888889999996544
No 62
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=99.18 E-value=2.7e-10 Score=109.24 Aligned_cols=106 Identities=16% Similarity=0.238 Sum_probs=81.1
Q ss_pred CCCEEEEEc-cChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhccHHHH
Q psy3240 41 QNSTVGIVG-CGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARL 119 (274)
Q Consensus 41 ~gktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l 119 (274)
..++|+||| +|.||+++|+.|+..|..+.+|+.+.. .+.++++++||+|++|+|... +..++ ++..
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~-----------~~~~~~~~~aDlVilavP~~~-~~~~~-~~l~ 163 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW-----------DRAEDILADAGMVIVSVPIHL-TEEVI-ARLP 163 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc-----------hhHHHHHhcCCEEEEeCcHHH-HHHHH-HHHh
Confidence 458999999 999999999999999997777765321 256788899999999999764 45555 3344
Q ss_pred hcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccceeecCCCcccCccceeeeeecccCCc
Q psy3240 120 ESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDT 191 (274)
Q Consensus 120 ~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 191 (274)
+ +++|++++|+++.+..-.+++.+. +. ..|+++||++|.+
T Consensus 164 ~-l~~~~iv~Dv~SvK~~~~~~~~~~----------------------------~~---~~fvg~HPm~G~~ 203 (374)
T PRK11199 164 P-LPEDCILVDLTSVKNAPLQAMLAA----------------------------HS---GPVLGLHPMFGPD 203 (374)
T ss_pred C-CCCCcEEEECCCccHHHHHHHHHh----------------------------CC---CCEEeeCCCCCCC
Confidence 4 899999999998765545555551 11 1499999999987
No 63
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=99.12 E-value=1.5e-10 Score=99.06 Aligned_cols=94 Identities=19% Similarity=0.272 Sum_probs=69.6
Q ss_pred CCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh--HhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhccHH
Q psy3240 40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--ADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRA 117 (274)
Q Consensus 40 L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~~ 117 (274)
|++|+|+|||+|..|++.|++|+..|.++++..+...+.. +++.|.+..+.+|++++||+|++.+|. +....++.++
T Consensus 2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~~~~eAv~~aDvV~~L~PD-~~q~~vy~~~ 80 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVMSVAEAVKKADVVMLLLPD-EVQPEVYEEE 80 (165)
T ss_dssp HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECCEHHHHHHC-SEEEE-S-H-HHHHHHHHHH
T ss_pred cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeeccHHHHHhhCCEEEEeCCh-HHHHHHHHHH
Confidence 6899999999999999999999999998777766555333 778899988999999999999999995 3445567788
Q ss_pred HHhcCCCCcEEEEcCCCc
Q psy3240 118 RLESMKPGAILINTSRGQ 135 (274)
Q Consensus 118 ~l~~mk~gailINv~RG~ 135 (274)
..+.||+|++|+ .+.|-
T Consensus 81 I~p~l~~G~~L~-fahGf 97 (165)
T PF07991_consen 81 IAPNLKPGATLV-FAHGF 97 (165)
T ss_dssp HHHHS-TT-EEE-ESSSH
T ss_pred HHhhCCCCCEEE-eCCcc
Confidence 899999999876 34443
No 64
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=99.11 E-value=3.5e-10 Score=105.37 Aligned_cols=92 Identities=18% Similarity=0.285 Sum_probs=76.2
Q ss_pred CCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc---CHHHHhcccCEEEEcCCCCcccHH
Q psy3240 37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT---NIDDLCKQSDFIIITSALTPDTHH 112 (274)
Q Consensus 37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~---sl~ell~~aDvVil~lPlt~~T~~ 112 (274)
+.++.|++++|||+|.+|+.+++.|+++|+++++++++..... +...|+... ++.+.++++|+|+.++|. .
T Consensus 147 ~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~-----~ 221 (296)
T PRK08306 147 PITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPA-----L 221 (296)
T ss_pred CCCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCCh-----h
Confidence 3578999999999999999999999999997777776644333 455666544 567888999999999984 4
Q ss_pred hccHHHHhcCCCCcEEEEcCC
Q psy3240 113 LINRARLESMKPGAILINTSR 133 (274)
Q Consensus 113 li~~~~l~~mk~gailINv~R 133 (274)
+++++.++.|++++++||++.
T Consensus 222 ~i~~~~l~~~~~g~vIIDla~ 242 (296)
T PRK08306 222 VLTKEVLSKMPPEALIIDLAS 242 (296)
T ss_pred hhhHHHHHcCCCCcEEEEEcc
Confidence 678899999999999999986
No 65
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=99.07 E-value=6.2e-10 Score=104.64 Aligned_cols=96 Identities=19% Similarity=0.238 Sum_probs=73.6
Q ss_pred CCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCCh-h-HhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhccHH
Q psy3240 40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKP-E-ADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRA 117 (274)
Q Consensus 40 L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~-~-a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~~ 117 (274)
|+||+|||||+|+||+++|+.|+.+|+++++++++.... . +.+.|+...+..+++++||+|++++|.... ...+.++
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~s~~ea~~~ADiVvLaVpp~~~-~~~v~~e 79 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVGTVEEAIPQADLIMNLLPDEVQ-HEVYEAE 79 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEECCHHHHHhcCCEEEEeCCcHhH-HHHHHHH
Confidence 679999999999999999999999999766666654322 2 345677666888999999999999996433 4455566
Q ss_pred HHhcCCCCcEEEEcCCCchh
Q psy3240 118 RLESMKPGAILINTSRGQLV 137 (274)
Q Consensus 118 ~l~~mk~gailINv~RG~iV 137 (274)
..+.++++. +|.++-|--+
T Consensus 80 i~~~l~~g~-iVs~aaG~~i 98 (314)
T TIGR00465 80 IQPLLKEGK-TLGFSHGFNI 98 (314)
T ss_pred HHhhCCCCc-EEEEeCCccH
Confidence 778888886 6777766443
No 66
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=99.05 E-value=2.4e-10 Score=106.54 Aligned_cols=132 Identities=18% Similarity=0.295 Sum_probs=107.1
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh--HhhcCCc-------ccCHHHHhcccCEEEEcCCCC-
Q psy3240 38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--ADKRGAE-------HTNIDDLCKQSDFIIITSALT- 107 (274)
Q Consensus 38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a~~~g~~-------~~sl~ell~~aDvVil~lPlt- 107 (274)
+.+...+|.|||.|.+|..-|+.+.++|+++.+.+.+..+.. ...++.+ ...+++.+.++|+|+-++-..
T Consensus 164 pGV~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpg 243 (371)
T COG0686 164 PGVLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPG 243 (371)
T ss_pred CCCCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecC
Confidence 346778999999999999999999999998888876654433 2222332 126888999999999776432
Q ss_pred cccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccceeecCCCcccCccceeeeeecc
Q psy3240 108 PDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMI 187 (274)
Q Consensus 108 ~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 187 (274)
.....++.++.+++||||+++||++ +|.--.++ ++++||+++|.|..++..||++.+.
T Consensus 244 akaPkLvt~e~vk~MkpGsVivDVA----iDqGGc~E------------------t~~~TTh~~PtY~~~gvvhY~VaNm 301 (371)
T COG0686 244 AKAPKLVTREMVKQMKPGSVIVDVA----IDQGGCFE------------------TSHPTTHDDPTYEVDGVVHYGVANM 301 (371)
T ss_pred CCCceehhHHHHHhcCCCcEEEEEE----EcCCCcee------------------ccccccCCCCceeecCEEEEecCCC
Confidence 3455677889999999999999998 77777777 8899999999999999999999999
Q ss_pred cCCc
Q psy3240 188 MGDT 191 (274)
Q Consensus 188 ~~~~ 191 (274)
||.-
T Consensus 302 PgaV 305 (371)
T COG0686 302 PGAV 305 (371)
T ss_pred Cccc
Confidence 9974
No 67
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=99.02 E-value=1.7e-09 Score=95.39 Aligned_cols=117 Identities=17% Similarity=0.260 Sum_probs=90.0
Q ss_pred CCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh--HhhcCCcccCHHHHhc-ccCEEEEcCCCCcccHHh
Q psy3240 37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--ADKRGAEHTNIDDLCK-QSDFIIITSALTPDTHHL 113 (274)
Q Consensus 37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a~~~g~~~~sl~ell~-~aDvVil~lPlt~~T~~l 113 (274)
+.+++||+++|+|+|+||+.+|+.|..+|+++++++.+..+.. ....+....+.++++. +||+++.|... ++
T Consensus 23 ~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v~~~~l~~~~~Dv~vp~A~~-----~~ 97 (200)
T cd01075 23 TDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVVAPEEIYSVDADVFAPCALG-----GV 97 (200)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEcchhhccccCCEEEecccc-----cc
Confidence 4689999999999999999999999999998776665443322 2233666666677775 79999976653 57
Q ss_pred ccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeeh-hhccc
Q psy3240 114 INRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISIS-MVTNE 160 (274)
Q Consensus 114 i~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D-~~~~~ 160 (274)
++++.++.|+ ..+++.-+-+...| ..-.+.|+++|+.+++ +.+|-
T Consensus 98 I~~~~~~~l~-~~~v~~~AN~~~~~-~~~~~~L~~~Gi~~~Pd~~~Na 143 (200)
T cd01075 98 INDDTIPQLK-AKAIAGAANNQLAD-PRHGQMLHERGILYAPDYVVNA 143 (200)
T ss_pred cCHHHHHHcC-CCEEEECCcCccCC-HhHHHHHHHCCCEEeCceeeeC
Confidence 8889999997 45888888887766 4556778899999887 77755
No 68
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=99.00 E-value=1.4e-09 Score=100.33 Aligned_cols=96 Identities=25% Similarity=0.294 Sum_probs=72.6
Q ss_pred CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh------------HhhcC-------------CcccCHHHHhccc
Q psy3240 43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE------------ADKRG-------------AEHTNIDDLCKQS 97 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~------------a~~~g-------------~~~~sl~ell~~a 97 (274)
++|+|||+|.||.++|+.+...|.++++|+.+....+ ..+.| ....+..+.++.|
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a 84 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELRDA 84 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhCCC
Confidence 6899999999999999999999998888876544321 01111 1222333568999
Q ss_pred CEEEEcCCCCcccHHhccHHHHhcCCCCcEEE-EcCCCchhc
Q psy3240 98 DFIIITSALTPDTHHLINRARLESMKPGAILI-NTSRGQLVD 138 (274)
Q Consensus 98 DvVil~lPlt~~T~~li~~~~l~~mk~gailI-Nv~RG~iVd 138 (274)
|+|+.|+|..++.+..+-.+..+.++++++|+ |+|...+.+
T Consensus 85 D~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~ 126 (295)
T PLN02545 85 DFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITR 126 (295)
T ss_pred CEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHH
Confidence 99999999999988887777777899999986 888765443
No 69
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=98.99 E-value=7.2e-10 Score=108.25 Aligned_cols=90 Identities=24% Similarity=0.262 Sum_probs=73.8
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCC------CChh-HhhcCCcccCHHHHhcccCEEEEcCCCCccc
Q psy3240 38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRS------KKPE-ADKRGAEHTNIDDLCKQSDFIIITSALTPDT 110 (274)
Q Consensus 38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~------~~~~-a~~~g~~~~sl~ell~~aDvVil~lPlt~~T 110 (274)
..|+||+|+|||+|.+|+.-|..|+..|.++++.-+.. ..-. +.+.|....+++|++++||+|++.+|.+ .
T Consensus 32 ~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v~~~~Ea~~~ADvVviLlPDt-~- 109 (487)
T PRK05225 32 SYLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADLVINLTPDK-Q- 109 (487)
T ss_pred HHhCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCccCCHHHHHHhCCEEEEcCChH-H-
Confidence 57999999999999999999999999999766443332 1111 4456777779999999999999999998 3
Q ss_pred HHhccHHHHhcCCCCcEEE
Q psy3240 111 HHLINRARLESMKPGAILI 129 (274)
Q Consensus 111 ~~li~~~~l~~mk~gailI 129 (274)
.+.+.++.++.||+|++|.
T Consensus 110 q~~v~~~i~p~LK~Ga~L~ 128 (487)
T PRK05225 110 HSDVVRAVQPLMKQGAALG 128 (487)
T ss_pred HHHHHHHHHhhCCCCCEEE
Confidence 6777799999999999884
No 70
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=98.99 E-value=5e-09 Score=95.56 Aligned_cols=129 Identities=17% Similarity=0.214 Sum_probs=87.9
Q ss_pred HHHHHccCC--CeEEEEeCCCCChh-HhhcCCccc--CHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEc
Q psy3240 57 VLEKLIPYK--VSKFLYTSRSKKPE-ADKRGAEHT--NIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINT 131 (274)
Q Consensus 57 iA~~L~~~G--~~vv~~~~r~~~~~-a~~~g~~~~--sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv 131 (274)
+|+.|+..| .+++++|.+..... +.+.|+... +-.+.++++|+|++|+|.. .+..++ ++..+.+++|++++|+
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP~~-~~~~~l-~~~~~~~~~~~iv~Dv 78 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVPVS-AIEDVL-EEIAPYLKPGAIVTDV 78 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S-HH-HHHHHH-HHHHCGS-TTSEEEE-
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCCHH-HHHHHH-HHhhhhcCCCcEEEEe
Confidence 577888777 66666766554444 556777543 3267899999999999963 355555 3566679999999999
Q ss_pred CCCchhcHHHHHhhhhhhhheeehhhcccccccceeecCCCcccCccceeeeeecccCCccceeeehhhhHHHhcCceeE
Q psy3240 132 SRGQLVDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRG 211 (274)
Q Consensus 132 ~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~ 211 (274)
++.+.--.+++.+.+. ....|+++||++|.+ ++|...
T Consensus 79 ~SvK~~~~~~~~~~~~-----------------------------~~~~~v~~HPM~G~e-------------~~G~~~- 115 (258)
T PF02153_consen 79 GSVKAPIVEAMERLLP-----------------------------EGVRFVGGHPMAGPE-------------KSGPEA- 115 (258)
T ss_dssp -S-CHHHHHHHHHHHT-----------------------------SSGEEEEEEESCSTS-------------SSSGGG-
T ss_pred CCCCHHHHHHHHHhcC-----------------------------cccceeecCCCCCCc-------------cccchh-
Confidence 9988666666666322 346899999999998 677654
Q ss_pred EEeccCCCCCCCCCCccccCCcEEEccCCCC
Q psy3240 212 AGLDVMYPEPLPLDSPLLQLDNCVILPHIGS 242 (274)
Q Consensus 212 a~lDv~~~ep~~~~~~l~~~~nvi~tPH~~~ 242 (274)
.+..|+...++++||+-..
T Consensus 116 ------------a~~~lf~g~~~il~p~~~~ 134 (258)
T PF02153_consen 116 ------------ADADLFEGRNWILCPGEDT 134 (258)
T ss_dssp -------------TTTTTTTSEEEEEECTTS
T ss_pred ------------hcccccCCCeEEEeCCCCC
Confidence 4578999999999998653
No 71
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.96 E-value=2.5e-09 Score=98.54 Aligned_cols=96 Identities=14% Similarity=0.166 Sum_probs=72.1
Q ss_pred CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-Hh-------hcC-----------------Ccc-cCHHHHhcc
Q psy3240 43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-AD-------KRG-----------------AEH-TNIDDLCKQ 96 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~-------~~g-----------------~~~-~sl~ell~~ 96 (274)
++|+|||+|.||..+|..|...|.++++|+.+....+ .. ..+ +.. .++++.+++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD 81 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence 5899999999999999999999998888876544322 11 011 122 367889999
Q ss_pred cCEEEEcCCCCcccHHhccHHHHhcCCCCcEE-EEcCCCchhc
Q psy3240 97 SDFIIITSALTPDTHHLINRARLESMKPGAIL-INTSRGQLVD 138 (274)
Q Consensus 97 aDvVil~lPlt~~T~~li~~~~l~~mk~gail-INv~RG~iVd 138 (274)
||+|+.|+|...+.+..+-.+..+.+++++++ +|+|+..+-.
T Consensus 82 aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~ 124 (288)
T PRK09260 82 ADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTE 124 (288)
T ss_pred CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHH
Confidence 99999999987776665555666778999877 7998866533
No 72
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.93 E-value=5.9e-09 Score=86.48 Aligned_cols=113 Identities=19% Similarity=0.279 Sum_probs=79.1
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHccCC-CeEEEEeCCCCChh--HhhcCC-----cccCHHHHhcccCEEEEcCCCCcc
Q psy3240 38 PALQNSTVGIVGCGRIGLSVLEKLIPYK-VSKFLYTSRSKKPE--ADKRGA-----EHTNIDDLCKQSDFIIITSALTPD 109 (274)
Q Consensus 38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G-~~vv~~~~r~~~~~--a~~~g~-----~~~sl~ell~~aDvVil~lPlt~~ 109 (274)
.++.+++++|+|.|.||+.+++.|...| .++.+++++..+.. +...+. ...+.+++++++|+|++++|....
T Consensus 15 ~~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~ 94 (155)
T cd01065 15 IELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMK 94 (155)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCC
Confidence 3577899999999999999999999886 54555554433222 223332 234777888999999999998654
Q ss_pred -cHH-hccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeeh
Q psy3240 110 -THH-LINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISIS 155 (274)
Q Consensus 110 -T~~-li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D 155 (274)
... .+... .++++.+++|++..+.. . .+.+.+++.|+.+++
T Consensus 95 ~~~~~~~~~~---~~~~~~~v~D~~~~~~~-~-~l~~~~~~~g~~~v~ 137 (155)
T cd01065 95 PGDELPLPPS---LLKPGGVVYDVVYNPLE-T-PLLKEARALGAKTID 137 (155)
T ss_pred CCCCCCCCHH---HcCCCCEEEEcCcCCCC-C-HHHHHHHHCCCceeC
Confidence 222 23322 36899999999887543 3 788877777776655
No 73
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.90 E-value=2.4e-08 Score=92.00 Aligned_cols=100 Identities=14% Similarity=0.171 Sum_probs=69.8
Q ss_pred CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-Hhh-------------------------cCCcc-cCHHHHhc
Q psy3240 43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADK-------------------------RGAEH-TNIDDLCK 95 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~-------------------------~g~~~-~sl~ell~ 95 (274)
++|+|||.|.||.++|..+...|.++++|+.+..... ..+ ..+.. .+++++++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~ 83 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVK 83 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhc
Confidence 5899999999999999999989998888876543221 110 11122 37888899
Q ss_pred ccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHh
Q psy3240 96 QSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALID 144 (274)
Q Consensus 96 ~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~ 144 (274)
.||+|+.++|...+.+.-+-++..+.++++++|+..+++- ....+.+
T Consensus 84 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~--~~~~~~~ 130 (287)
T PRK08293 84 DADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTL--LPSQFAE 130 (287)
T ss_pred CCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccC--CHHHHHh
Confidence 9999999999765555544456667788999885443333 3344555
No 74
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.86 E-value=1.2e-08 Score=92.38 Aligned_cols=115 Identities=17% Similarity=0.294 Sum_probs=96.7
Q ss_pred CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-CHHHHh---cccCEEEEcCCCCcccHHhccHH
Q psy3240 43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-NIDDLC---KQSDFIIITSALTPDTHHLINRA 117 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-sl~ell---~~aDvVil~lPlt~~T~~li~~~ 117 (274)
+++|.||+|+||..++++|...|.++++||......+ +...+++.+ +++|++ ...-+|-+++|....|..+++ +
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi~-~ 79 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVID-D 79 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHHH-H
Confidence 4789999999999999999999998888887665444 556676554 777764 456899999999988888874 5
Q ss_pred HHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhc
Q psy3240 118 RLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVT 158 (274)
Q Consensus 118 ~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~ 158 (274)
.-+.|.+|-++||-+-..--|...-.+.|+++|++|+||-|
T Consensus 80 la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GT 120 (300)
T COG1023 80 LAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGT 120 (300)
T ss_pred HHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccC
Confidence 67778999999999988877888888889999999999988
No 75
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.84 E-value=1.9e-08 Score=94.96 Aligned_cols=100 Identities=15% Similarity=0.234 Sum_probs=76.2
Q ss_pred CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-Hh-----------hcC---------Ccc-cCHHHHhcccCEE
Q psy3240 43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-AD-----------KRG---------AEH-TNIDDLCKQSDFI 100 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~-----------~~g---------~~~-~sl~ell~~aDvV 100 (274)
++|+|||.|.||..+|..+...|++|++||....... .. +.+ +.. .+++++++.||+|
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlV 87 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFI 87 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEE
Confidence 6899999999999999999999998888887643221 10 111 122 2788999999999
Q ss_pred EEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHh
Q psy3240 101 IITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALID 144 (274)
Q Consensus 101 il~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~ 144 (274)
+-++|...+.+..+-++.-+.+++++ +|.+++.. ....++.+
T Consensus 88 iEavpE~l~vK~~lf~~l~~~~~~~a-IlaSnTS~-l~~s~la~ 129 (321)
T PRK07066 88 QESAPEREALKLELHERISRAAKPDA-IIASSTSG-LLPTDFYA 129 (321)
T ss_pred EECCcCCHHHHHHHHHHHHHhCCCCe-EEEECCCc-cCHHHHHH
Confidence 99999999999888788888899998 55554443 45555655
No 76
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=98.84 E-value=1e-08 Score=97.30 Aligned_cols=102 Identities=21% Similarity=0.334 Sum_probs=85.4
Q ss_pred CCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhccHH
Q psy3240 39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRA 117 (274)
Q Consensus 39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~~ 117 (274)
-+.||++.|.|||..|+.+|+++++.|+++++....+-+.. +.-.|++...++|+...+|+++.++ .++++|..+
T Consensus 206 liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~~m~~Aa~~gDifiT~T----GnkdVi~~e 281 (420)
T COG0499 206 LLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKTGDIFVTAT----GNKDVIRKE 281 (420)
T ss_pred eecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEEEEhHHhhhcCCEEEEcc----CCcCccCHH
Confidence 37899999999999999999999999997766654443332 6677888889999999999999966 567889999
Q ss_pred HHhcCCCCcEEEEcCCCch-hcHHHHHh
Q psy3240 118 RLESMKPGAILINTSRGQL-VDQEALID 144 (274)
Q Consensus 118 ~l~~mk~gailINv~RG~i-Vde~aL~~ 144 (274)
.+..||+|+++-|.|.-.+ +|.+.|.+
T Consensus 282 h~~~MkDgaIl~N~GHFd~EI~~~~L~~ 309 (420)
T COG0499 282 HFEKMKDGAILANAGHFDVEIDVAGLEE 309 (420)
T ss_pred HHHhccCCeEEecccccceeccHHHHHH
Confidence 9999999999999997665 46666654
No 77
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=98.83 E-value=6.6e-09 Score=79.92 Aligned_cols=88 Identities=18% Similarity=0.405 Sum_probs=62.5
Q ss_pred EEEEEccChHHHHHHHHHccCC---CeEEEEeCCCCCh-h--HhhcCCcc-c-CHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240 44 TVGIVGCGRIGLSVLEKLIPYK---VSKFLYTSRSKKP-E--ADKRGAEH-T-NIDDLCKQSDFIIITSALTPDTHHLIN 115 (274)
Q Consensus 44 tVGIIGlG~IG~~iA~~L~~~G---~~vv~~~~r~~~~-~--a~~~g~~~-~-sl~ell~~aDvVil~lPlt~~T~~li~ 115 (274)
||||||+|+||+++++.|...| .++.++.+|+.+. . +.+.++.. . +..|++++||+|++++|. .....++.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p-~~~~~v~~ 79 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKP-QQLPEVLS 79 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-G-GGHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECH-HHHHHHHH
Confidence 7999999999999999999998 7666454444433 2 44556543 2 789999999999999995 33344442
Q ss_pred HHHHhcCCCCcEEEEcCCC
Q psy3240 116 RARLESMKPGAILINTSRG 134 (274)
Q Consensus 116 ~~~l~~mk~gailINv~RG 134 (274)
+. ....++.++|++.-|
T Consensus 80 -~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 80 -EI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp -HH-HHHHTTSEEEEESTT
T ss_pred -HH-hhccCCCEEEEeCCC
Confidence 33 556789999998643
No 78
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.83 E-value=1.5e-08 Score=94.37 Aligned_cols=83 Identities=16% Similarity=0.292 Sum_probs=66.0
Q ss_pred CCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhccHHHHh
Q psy3240 41 QNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLE 120 (274)
Q Consensus 41 ~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~ 120 (274)
.+++|+|||+|.||+++|++|...|.++.+|+++.. .+++++++++|+|++++|. +..+.++.. ...
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~-----------~~~~~~~~~advvi~~vp~-~~~~~v~~~-l~~ 69 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG-----------LSLAAVLADADVIVSAVSM-KGVRPVAEQ-VQA 69 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC-----------CCHHHHHhcCCEEEEECCh-HHHHHHHHH-HHH
Confidence 457899999999999999999999997776665432 3678889999999999997 477777733 323
Q ss_pred -cCCCCcEEEEcCCCch
Q psy3240 121 -SMKPGAILINTSRGQL 136 (274)
Q Consensus 121 -~mk~gailINv~RG~i 136 (274)
.+++++++|++++|-.
T Consensus 70 ~~~~~~~ivi~~s~gi~ 86 (308)
T PRK14619 70 LNLPPETIIVTATKGLD 86 (308)
T ss_pred hcCCCCcEEEEeCCccc
Confidence 4788999999987543
No 79
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.82 E-value=1.9e-08 Score=92.80 Aligned_cols=98 Identities=20% Similarity=0.279 Sum_probs=70.9
Q ss_pred CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-Hhh-----------cC-------------Cccc-CHHHHhcc
Q psy3240 43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADK-----------RG-------------AEHT-NIDDLCKQ 96 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~-----------~g-------------~~~~-sl~ell~~ 96 (274)
++|+|||.|.||..+|..+...|.++++|+.+..... ..+ .+ +... +++ .+++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 83 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLAD 83 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-HhcC
Confidence 6899999999999999999999998888876543222 110 12 1222 554 5789
Q ss_pred cCEEEEcCCCCcccHHhccHHHHhcCCCCcEEE-EcCCCchhcHHHHHh
Q psy3240 97 SDFIIITSALTPDTHHLINRARLESMKPGAILI-NTSRGQLVDQEALID 144 (274)
Q Consensus 97 aDvVil~lPlt~~T~~li~~~~l~~mk~gailI-Nv~RG~iVde~aL~~ 144 (274)
||+|+.++|...+.+..+-++..+.++++++++ |+|.-.+ .++.+
T Consensus 84 aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~---s~la~ 129 (292)
T PRK07530 84 CDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISI---TRLAS 129 (292)
T ss_pred CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH---HHHHh
Confidence 999999999877766555456777889999998 7766543 34555
No 80
>PLN02688 pyrroline-5-carboxylate reductase
Probab=98.81 E-value=1.8e-08 Score=91.27 Aligned_cols=98 Identities=15% Similarity=0.269 Sum_probs=72.6
Q ss_pred CEEEEEccChHHHHHHHHHccCCC----eEEEEeCCCCChh--HhhcCCccc-CHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240 43 STVGIVGCGRIGLSVLEKLIPYKV----SKFLYTSRSKKPE--ADKRGAEHT-NIDDLCKQSDFIIITSALTPDTHHLIN 115 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~~L~~~G~----~vv~~~~r~~~~~--a~~~g~~~~-sl~ell~~aDvVil~lPlt~~T~~li~ 115 (274)
++|||||+|+||+++|+.|...|. ++++++++..... ..+.|+... +..+++++||+|++|+| .+..+.++.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~-~~~~~~vl~ 79 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVK-PQVVKDVLT 79 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEEC-cHHHHHHHH
Confidence 479999999999999999988776 5666645554332 445677554 78888999999999997 455666663
Q ss_pred HHHHhcCCCCcEEEEcCCCchhcHHHHHh
Q psy3240 116 RARLESMKPGAILINTSRGQLVDQEALID 144 (274)
Q Consensus 116 ~~~l~~mk~gailINv~RG~iVde~aL~~ 144 (274)
+..+.++++.++|++..| +..+.+.+
T Consensus 80 -~l~~~~~~~~~iIs~~~g--~~~~~l~~ 105 (266)
T PLN02688 80 -ELRPLLSKDKLLVSVAAG--ITLADLQE 105 (266)
T ss_pred -HHHhhcCCCCEEEEecCC--CcHHHHHH
Confidence 455667889999988655 35555555
No 81
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=98.81 E-value=3.9e-08 Score=95.61 Aligned_cols=108 Identities=19% Similarity=0.335 Sum_probs=77.5
Q ss_pred CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcc---cCHHHHh---------------cccCEEEEcC
Q psy3240 43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEH---TNIDDLC---------------KQSDFIIITS 104 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~---~sl~ell---------------~~aDvVil~l 104 (274)
++|+|||+|.||..+|..|...|.++++|+.+..+.+....|... ..+++++ +.||+|++|+
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~v 83 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIAV 83 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEEc
Confidence 789999999999999999999999888887655443333333221 1444442 3799999999
Q ss_pred CCC------cccHHhc--cHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhh
Q psy3240 105 ALT------PDTHHLI--NRARLESMKPGAILINTSRGQLVDQEALIDFIADIR 150 (274)
Q Consensus 105 Plt------~~T~~li--~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~ 150 (274)
|.. ++...+. -....+.+++|+++|+.|+..+--.+.+...+.+.+
T Consensus 84 ptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~ 137 (415)
T PRK11064 84 PTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEAR 137 (415)
T ss_pred CCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhc
Confidence 964 2333333 245677889999999999988777777777665543
No 82
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=98.81 E-value=4.3e-09 Score=89.97 Aligned_cols=124 Identities=20% Similarity=0.269 Sum_probs=89.3
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCc---c------------------------cC
Q psy3240 38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAE---H------------------------TN 89 (274)
Q Consensus 38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~---~------------------------~s 89 (274)
..+...+|.|+|.|+.|+..++.++++|++++.++.+..... ....+.. . ..
T Consensus 16 ~~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (168)
T PF01262_consen 16 GGVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESN 95 (168)
T ss_dssp TEE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHH
T ss_pred CCCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHH
Confidence 456779999999999999999999999998888887654332 2222211 1 14
Q ss_pred HHHHhcccCEEEEcC-CCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccceee
Q psy3240 90 IDDLCKQSDFIIITS-ALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRVFT 168 (274)
Q Consensus 90 l~ell~~aDvVil~l-Plt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~~~ 168 (274)
+.+.++.+|+|+.++ -..+....++.++.++.|||+++++|+| +|..--++ +++.+|
T Consensus 96 f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis----~D~gG~iE------------------~t~~~T 153 (168)
T PF01262_consen 96 FAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS----CDQGGSIE------------------TTRPTT 153 (168)
T ss_dssp HHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT----GGGT-SBT------------------TEETTB
T ss_pred HHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE----ecCCCCcC------------------ccccCC
Confidence 667889999988643 3456677899999999999999999997 55544444 678899
Q ss_pred cCCCcccCccceeee
Q psy3240 169 LGDSFHKGHVSAFIF 183 (274)
Q Consensus 169 ~~~~~~~~~~~~~~~ 183 (274)
+++++|++++..+|+
T Consensus 154 ~~~p~~~~~GV~~~~ 168 (168)
T PF01262_consen 154 HADPTYEKNGVTHYG 168 (168)
T ss_dssp TTCEEEEETTEEEEE
T ss_pred CCCCeEEeCCEEEEC
Confidence 999999999988875
No 83
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=98.77 E-value=8.4e-08 Score=92.83 Aligned_cols=102 Identities=17% Similarity=0.205 Sum_probs=73.4
Q ss_pred CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhh--------------------cC-Ccc-cCHHHHhcccCEE
Q psy3240 43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADK--------------------RG-AEH-TNIDDLCKQSDFI 100 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~--------------------~g-~~~-~sl~ell~~aDvV 100 (274)
++|+|||+|.||..+|..|...|.++++|+.+..+..... .| +.. .++++++++||+|
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advv 80 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVI 80 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEE
Confidence 3799999999999999999999998888876554332111 12 233 2678889999999
Q ss_pred EEcCCCCcc------cHHhc--cHHHHhcCCCCcEEEEcCCCchhcHHHHHh
Q psy3240 101 IITSALTPD------THHLI--NRARLESMKPGAILINTSRGQLVDQEALID 144 (274)
Q Consensus 101 il~lPlt~~------T~~li--~~~~l~~mk~gailINv~RG~iVde~aL~~ 144 (274)
++|+|.... ...+. -.+..+.+++|.++|+.|+..+-..+.+.+
T Consensus 81 ii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~ 132 (411)
T TIGR03026 81 IICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVK 132 (411)
T ss_pred EEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHH
Confidence 999996432 12222 134667789999999999766555566654
No 84
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.77 E-value=2.6e-08 Score=93.19 Aligned_cols=79 Identities=24% Similarity=0.408 Sum_probs=66.3
Q ss_pred CCCCCCCEEEEEccC-hHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240 37 GPALQNSTVGIVGCG-RIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN 115 (274)
Q Consensus 37 g~~L~gktVGIIGlG-~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~ 115 (274)
|.++.||+|+|||.| .||+.||.+|...|+.+.++++++. ++.++.++||+|+++++..+ .+.
T Consensus 154 ~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~------------~l~e~~~~ADIVIsavg~~~----~v~ 217 (301)
T PRK14194 154 CGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRST------------DAKALCRQADIVVAAVGRPR----LID 217 (301)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCC------------CHHHHHhcCCEEEEecCChh----ccc
Confidence 578999999999996 9999999999999997777765542 68899999999999998643 455
Q ss_pred HHHHhcCCCCcEEEEcCCC
Q psy3240 116 RARLESMKPGAILINTSRG 134 (274)
Q Consensus 116 ~~~l~~mk~gailINv~RG 134 (274)
+.. +|+|+++||+|--
T Consensus 218 ~~~---ik~GaiVIDvgin 233 (301)
T PRK14194 218 ADW---LKPGAVVIDVGIN 233 (301)
T ss_pred Hhh---ccCCcEEEEeccc
Confidence 544 7999999999853
No 85
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=98.75 E-value=2.3e-08 Score=98.52 Aligned_cols=105 Identities=12% Similarity=0.157 Sum_probs=86.9
Q ss_pred HHHHHHHHHccCCCeEEEEeCCCCChh-Hhhc-----CCccc-CHHHHhcc---cCEEEEcCCCCcccHHhccHHHHhcC
Q psy3240 53 IGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKR-----GAEHT-NIDDLCKQ---SDFIIITSALTPDTHHLINRARLESM 122 (274)
Q Consensus 53 IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~-----g~~~~-sl~ell~~---aDvVil~lPlt~~T~~li~~~~l~~m 122 (274)
||+.||++|...|.++++|++...+.+ ..+. ++..+ +++|+++. +|+|++++|..+.++.++ .+.++.|
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi-~~l~~~l 79 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVI-EQLLPLL 79 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHH-HHHHhcC
Confidence 799999999999997777655444433 3331 35443 89998874 899999999999999998 4688999
Q ss_pred CCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhc
Q psy3240 123 KPGAILINTSRGQLVDQEALIDFIADIRVISISMVT 158 (274)
Q Consensus 123 k~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~ 158 (274)
.+|.++||+++...-|.....+.++++|+.|+|+-.
T Consensus 80 ~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapV 115 (459)
T PRK09287 80 EKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGV 115 (459)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCC
Confidence 999999999999999999999999999999999544
No 86
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=98.71 E-value=7.4e-08 Score=94.08 Aligned_cols=112 Identities=21% Similarity=0.179 Sum_probs=80.9
Q ss_pred CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCc-----------------ccCHHHHhcccCEEEEcCC
Q psy3240 43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAE-----------------HTNIDDLCKQSDFIIITSA 105 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~-----------------~~sl~ell~~aDvVil~lP 105 (274)
++|||||+|.||..+|..|.+ |.++++||....+.+....|.. ..+..+.+++||++++|+|
T Consensus 7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~Vp 85 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKFTSEIEKIKECNFYIITVP 85 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEEcC
Confidence 789999999999999999877 6888888876655443233332 2233457899999999999
Q ss_pred CC------cccHHhcc--HHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhh--hheeeh
Q psy3240 106 LT------PDTHHLIN--RARLESMKPGAILINTSRGQLVDQEALIDFIADI--RVISIS 155 (274)
Q Consensus 106 lt------~~T~~li~--~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~--~i~~~D 155 (274)
.. ++...++. ....+.+++|.++|+.|+..+-..+.+++.+.+. |+.+.|
T Consensus 86 tp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~ 145 (425)
T PRK15182 86 TPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQ 145 (425)
T ss_pred CCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCC
Confidence 65 34456653 4567889999999999999888777654443332 555444
No 87
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.68 E-value=6.3e-08 Score=90.73 Aligned_cols=101 Identities=14% Similarity=0.191 Sum_probs=72.5
Q ss_pred CCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-Hhhc--------C------Ccc-cCHHHHhcccCEEEEcCC
Q psy3240 42 NSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKR--------G------AEH-TNIDDLCKQSDFIIITSA 105 (274)
Q Consensus 42 gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~--------g------~~~-~sl~ell~~aDvVil~lP 105 (274)
.++|+|||+|.||..+|.+|...|.++.+|+++....+ .... + +.. .+++++++.+|+|++++|
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~ 83 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVP 83 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECc
Confidence 35899999999999999999999997777766444322 2221 2 222 378888999999999999
Q ss_pred CCcccHHhccHHHHhcCCCCcEEEEcCCC-chhc--HHHHHhhhhh
Q psy3240 106 LTPDTHHLINRARLESMKPGAILINTSRG-QLVD--QEALIDFIAD 148 (274)
Q Consensus 106 lt~~T~~li~~~~l~~mk~gailINv~RG-~iVd--e~aL~~~L~~ 148 (274)
.. .+ ++.++.++++.++|+++.| ..-+ .+.+.+.+.+
T Consensus 84 ~~-~~-----~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~ 123 (328)
T PRK14618 84 SK-AL-----RETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEF 123 (328)
T ss_pred hH-HH-----HHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHH
Confidence 75 22 4556778999999999997 3332 4455554443
No 88
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.67 E-value=1.2e-07 Score=87.72 Aligned_cols=99 Identities=18% Similarity=0.256 Sum_probs=73.0
Q ss_pred CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhH------------hhcCC-------------ccc-CHHHHhcc
Q psy3240 43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEA------------DKRGA-------------EHT-NIDDLCKQ 96 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a------------~~~g~-------------~~~-sl~ell~~ 96 (274)
++|||||.|.||..+|..+...|.++++|+......+. .+.|. ... ++ +.++.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~ 84 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFAD 84 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCC
Confidence 48999999999999999999999988888876553221 11121 122 56 55799
Q ss_pred cCEEEEcCCCCcccHHhccHHHHhcC-CCCcEEEEcCCCchhcHHHH
Q psy3240 97 SDFIIITSALTPDTHHLINRARLESM-KPGAILINTSRGQLVDQEAL 142 (274)
Q Consensus 97 aDvVil~lPlt~~T~~li~~~~l~~m-k~gailINv~RG~iVde~aL 142 (274)
||+|+-++|.+.+.+..+-.+.-+.+ +++++++..+++-.+..-+.
T Consensus 85 ~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~ 131 (286)
T PRK07819 85 RQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAA 131 (286)
T ss_pred CCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh
Confidence 99999999999988887765444445 89999988877655544443
No 89
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.67 E-value=1.4e-07 Score=87.87 Aligned_cols=117 Identities=14% Similarity=0.195 Sum_probs=76.9
Q ss_pred CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-H-----------hhcCC-------------cc-cCHHHHhcc
Q psy3240 43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-A-----------DKRGA-------------EH-TNIDDLCKQ 96 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a-----------~~~g~-------------~~-~sl~ell~~ 96 (274)
++|+|||+|.||.++|..|...|.++++|+++..... . .+.|. .. .++.++++.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~ 82 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD 82 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence 4799999999999999999999998888876543221 1 12232 22 378889999
Q ss_pred cCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccceeecCCCcccC
Q psy3240 97 SDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKG 176 (274)
Q Consensus 97 aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~~~~~~~~~~~ 176 (274)
||+|+.++|...+.+..+-.+ ++.+.++.++|..+... .....+.+.+ .
T Consensus 83 ad~Vi~avpe~~~~k~~~~~~-l~~~~~~~~ii~ssts~-~~~~~la~~~-----------------------------~ 131 (308)
T PRK06129 83 ADYVQESAPENLELKRALFAE-LDALAPPHAILASSTSA-LLASAFTEHL-----------------------------A 131 (308)
T ss_pred CCEEEECCcCCHHHHHHHHHH-HHHhCCCcceEEEeCCC-CCHHHHHHhc-----------------------------C
Confidence 999999999865554443333 34433444444443333 3455566632 2
Q ss_pred ccceeeeeecccCC
Q psy3240 177 HVSAFIFIHMIMGD 190 (274)
Q Consensus 177 ~~~~~~~~~~i~~~ 190 (274)
++..|+..||+.+.
T Consensus 132 ~~~~~~~~hp~~p~ 145 (308)
T PRK06129 132 GRERCLVAHPINPP 145 (308)
T ss_pred CcccEEEEecCCCc
Confidence 45678888888765
No 90
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.66 E-value=6.7e-08 Score=88.99 Aligned_cols=101 Identities=18% Similarity=0.345 Sum_probs=71.1
Q ss_pred CCEEEEEccChHHHHHHHHHccCCC----eEEEEeCCCCChh-Hh-hcCCccc-CHHHHhcccCEEEEcCCCCcccHHhc
Q psy3240 42 NSTVGIVGCGRIGLSVLEKLIPYKV----SKFLYTSRSKKPE-AD-KRGAEHT-NIDDLCKQSDFIIITSALTPDTHHLI 114 (274)
Q Consensus 42 gktVGIIGlG~IG~~iA~~L~~~G~----~vv~~~~r~~~~~-a~-~~g~~~~-sl~ell~~aDvVil~lPlt~~T~~li 114 (274)
.++|||||+|+||+++|+.|...|. ++++++++..+.. .. +.|+... +..+++++||+|++++|. .....++
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavkP-~~~~~vl 80 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIKP-DLYSSVI 80 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeCh-HHHHHHH
Confidence 3589999999999999999987663 3444443332222 22 3576544 778899999999999994 5666666
Q ss_pred cHHHHhcCCCCcEEEEcCCCchhcHHHHHhhh
Q psy3240 115 NRARLESMKPGAILINTSRGQLVDQEALIDFI 146 (274)
Q Consensus 115 ~~~~l~~mk~gailINv~RG~iVde~aL~~~L 146 (274)
.+..+.+++++++|++.-| ++.+.|.+.+
T Consensus 81 -~~l~~~~~~~~lvISi~AG--i~i~~l~~~l 109 (272)
T PRK12491 81 -NQIKDQIKNDVIVVTIAAG--KSIKSTENEF 109 (272)
T ss_pred -HHHHHhhcCCcEEEEeCCC--CcHHHHHHhc
Confidence 3444557888999999877 4455555543
No 91
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=98.65 E-value=9.3e-08 Score=95.32 Aligned_cols=100 Identities=20% Similarity=0.311 Sum_probs=75.0
Q ss_pred CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-H-----------hhcC-------------Cccc-CHHHHhcc
Q psy3240 43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-A-----------DKRG-------------AEHT-NIDDLCKQ 96 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a-----------~~~g-------------~~~~-sl~ell~~ 96 (274)
++|||||+|.||..||..+...|..+++|+......+ . .+.| +... ++++ ++.
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~~ 86 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LAD 86 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hCC
Confidence 6899999999999999999999998888876554322 1 2223 2232 6655 569
Q ss_pred cCEEEEcCCCCcccHHhccHHHHhcCCCCcEE-EEcCCCchhcHHHHHhhh
Q psy3240 97 SDFIIITSALTPDTHHLINRARLESMKPGAIL-INTSRGQLVDQEALIDFI 146 (274)
Q Consensus 97 aDvVil~lPlt~~T~~li~~~~l~~mk~gail-INv~RG~iVde~aL~~~L 146 (274)
||+|+-++|...+.+..+-.+.-+.+++++++ +|+|+-.+- .+.+.+
T Consensus 87 aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~---~la~~~ 134 (507)
T PRK08268 87 CDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSIT---AIAAAL 134 (507)
T ss_pred CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH---HHHhhc
Confidence 99999999999998887766655567899999 599987764 455533
No 92
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.64 E-value=1.2e-07 Score=88.66 Aligned_cols=80 Identities=16% Similarity=0.396 Sum_probs=66.4
Q ss_pred CCCCCCCEEEEEc-cChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240 37 GPALQNSTVGIVG-CGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN 115 (274)
Q Consensus 37 g~~L~gktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~ 115 (274)
+-++.||+|+||| .|.||++||++|...|+.+.++++++. ++++++++||+|+++++..+ ++.
T Consensus 153 ~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~------------~l~e~~~~ADIVIsavg~~~----~v~ 216 (296)
T PRK14188 153 HGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR------------DLPAVCRRADILVAAVGRPE----MVK 216 (296)
T ss_pred CCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC------------CHHHHHhcCCEEEEecCChh----hcc
Confidence 4689999999999 999999999999999998777765553 47889999999999998644 454
Q ss_pred HHHHhcCCCCcEEEEcCCCc
Q psy3240 116 RARLESMKPGAILINTSRGQ 135 (274)
Q Consensus 116 ~~~l~~mk~gailINv~RG~ 135 (274)
+.. +++|+++||+|--.
T Consensus 217 ~~~---lk~GavVIDvGin~ 233 (296)
T PRK14188 217 GDW---IKPGATVIDVGINR 233 (296)
T ss_pred hhe---ecCCCEEEEcCCcc
Confidence 433 79999999998533
No 93
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=98.63 E-value=1e-07 Score=88.79 Aligned_cols=89 Identities=18% Similarity=0.270 Sum_probs=75.2
Q ss_pred CCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh--HhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhccH
Q psy3240 39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--ADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINR 116 (274)
Q Consensus 39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~ 116 (274)
-|+||+|+|||+|+-|.+=|.+|+..|.++++.-+...... +.+.|....+.+|++++||+|.+.+|. +....++.+
T Consensus 15 ~LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V~~v~ea~k~ADvim~L~PD-e~q~~vy~~ 93 (338)
T COG0059 15 LLKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVYTVEEAAKRADVVMILLPD-EQQKEVYEK 93 (338)
T ss_pred HhcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEeecHHHHhhcCCEEEEeCch-hhHHHHHHH
Confidence 58999999999999999999999999998776665554433 777898888999999999999999995 344567777
Q ss_pred HHHhcCCCCcEE
Q psy3240 117 ARLESMKPGAIL 128 (274)
Q Consensus 117 ~~l~~mk~gail 128 (274)
+.-+.|++|+.|
T Consensus 94 ~I~p~Lk~G~aL 105 (338)
T COG0059 94 EIAPNLKEGAAL 105 (338)
T ss_pred HhhhhhcCCceE
Confidence 888899999865
No 94
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=98.63 E-value=2.2e-07 Score=89.73 Aligned_cols=107 Identities=14% Similarity=0.166 Sum_probs=73.7
Q ss_pred CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhc-----------------CCcc-c--CHHHHhcccCEEEE
Q psy3240 43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKR-----------------GAEH-T--NIDDLCKQSDFIII 102 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~-----------------g~~~-~--sl~ell~~aDvVil 102 (274)
++|+|||+|.||..+|..+. .|.++++||....+.+.... +... . +..++++.||+|++
T Consensus 1 mkI~VIGlGyvGl~~A~~lA-~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii 79 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA-QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVII 79 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH-hCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEE
Confidence 37999999999999997776 48988888876554331111 2222 1 36678899999999
Q ss_pred cCCCCccc-------HHhcc--HHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhh
Q psy3240 103 TSALTPDT-------HHLIN--RARLESMKPGAILINTSRGQLVDQEALIDFIADIRV 151 (274)
Q Consensus 103 ~lPlt~~T-------~~li~--~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i 151 (274)
|+|...+- ..+.. ++..+ +++|.++|+.|+..+=-.+.+.+.+.+.++
T Consensus 80 ~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~~~v 136 (388)
T PRK15057 80 ATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRTENI 136 (388)
T ss_pred eCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCchHHHHHHHhhcCcE
Confidence 99965111 12211 23344 799999999999888788888875554333
No 95
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.63 E-value=1.8e-07 Score=86.17 Aligned_cols=107 Identities=20% Similarity=0.191 Sum_probs=76.3
Q ss_pred CCCEEEEEccChHHHHHHHHHcc--CCCeEEEEeCCCCChh---HhhcCC-c-ccCHHHHhcccCEEEEcCCCCcccHHh
Q psy3240 41 QNSTVGIVGCGRIGLSVLEKLIP--YKVSKFLYTSRSKKPE---ADKRGA-E-HTNIDDLCKQSDFIIITSALTPDTHHL 113 (274)
Q Consensus 41 ~gktVGIIGlG~IG~~iA~~L~~--~G~~vv~~~~r~~~~~---a~~~g~-~-~~sl~ell~~aDvVil~lPlt~~T~~l 113 (274)
...+|||||+|.||+.+++.+.. .+++++.+.++..... +...+. . +.+++++++++|+|++|+|.... .-
T Consensus 5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~~h--~e 82 (271)
T PRK13302 5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPASVL--RA 82 (271)
T ss_pred CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcHHH--HH
Confidence 35799999999999999999975 4776665555544322 334453 2 34899999999999999996332 22
Q ss_pred ccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhhe
Q psy3240 114 INRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVI 152 (274)
Q Consensus 114 i~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~ 152 (274)
+.... ++.|.-++..+++.+.+.++|.+..++.|..
T Consensus 83 ~~~~a---L~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~ 118 (271)
T PRK13302 83 IVEPV---LAAGKKAIVLSVGALLRNEDLIDLARQNGGQ 118 (271)
T ss_pred HHHHH---HHcCCcEEEecchhHHhHHHHHHHHHHcCCE
Confidence 22333 4567777778889888889999988776654
No 96
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.62 E-value=1.5e-07 Score=86.46 Aligned_cols=99 Identities=15% Similarity=0.278 Sum_probs=68.0
Q ss_pred CCCEEEEEccChHHHHHHHHHccCC----CeEEEEeCCCCC-h-h--HhhcCCccc-CHHHHhcccCEEEEcCCCCcccH
Q psy3240 41 QNSTVGIVGCGRIGLSVLEKLIPYK----VSKFLYTSRSKK-P-E--ADKRGAEHT-NIDDLCKQSDFIIITSALTPDTH 111 (274)
Q Consensus 41 ~gktVGIIGlG~IG~~iA~~L~~~G----~~vv~~~~r~~~-~-~--a~~~g~~~~-sl~ell~~aDvVil~lPlt~~T~ 111 (274)
.+++|+|||+|+||+++|+.|...| .++++ ++|+.. . . ....++... +..+++++||+|++++|.. ...
T Consensus 2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v-~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p~-~~~ 79 (279)
T PRK07679 2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITV-SNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKPK-DVA 79 (279)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEE-ECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCHH-HHH
Confidence 3568999999999999999998776 43444 444332 2 2 233466543 7888899999999999953 444
Q ss_pred HhccHHHHhcCCCCcEEEEcCCCchhcHHHHHh
Q psy3240 112 HLINRARLESMKPGAILINTSRGQLVDQEALID 144 (274)
Q Consensus 112 ~li~~~~l~~mk~gailINv~RG~iVde~aL~~ 144 (274)
.++ .+..+.++++.++|++.-|- ..+.+.+
T Consensus 80 ~vl-~~l~~~~~~~~liIs~~aGi--~~~~l~~ 109 (279)
T PRK07679 80 EAL-IPFKEYIHNNQLIISLLAGV--STHSIRN 109 (279)
T ss_pred HHH-HHHHhhcCCCCEEEEECCCC--CHHHHHH
Confidence 444 34555678899999985443 3444444
No 97
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.60 E-value=1.7e-07 Score=87.07 Aligned_cols=100 Identities=14% Similarity=0.187 Sum_probs=65.8
Q ss_pred CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-Hhh-----cC--------------Ccc-cCHHHHhcccCEEE
Q psy3240 43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADK-----RG--------------AEH-TNIDDLCKQSDFII 101 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~-----~g--------------~~~-~sl~ell~~aDvVi 101 (274)
++|+|||+|.||..+|..|...|.++++++.+..... ..+ .+ +.. .++++++++||+|+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi 84 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVI 84 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEE
Confidence 6899999999999999999999998888876544322 111 11 122 36778899999999
Q ss_pred EcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHh
Q psy3240 102 ITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALID 144 (274)
Q Consensus 102 l~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~ 144 (274)
+++|...+...-+-.+.-..++++++++....| +....+.+
T Consensus 85 ~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg--~~~~~l~~ 125 (311)
T PRK06130 85 EAVPEKLELKRDVFARLDGLCDPDTIFATNTSG--LPITAIAQ 125 (311)
T ss_pred EeccCcHHHHHHHHHHHHHhCCCCcEEEECCCC--CCHHHHHh
Confidence 999976543333323333446777766433333 23445655
No 98
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.60 E-value=1.8e-07 Score=85.84 Aligned_cols=99 Identities=20% Similarity=0.266 Sum_probs=69.0
Q ss_pred CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh------------HhhcC-------------Cccc-CHHHHhcc
Q psy3240 43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE------------ADKRG-------------AEHT-NIDDLCKQ 96 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~------------a~~~g-------------~~~~-sl~ell~~ 96 (274)
++|+|||+|.||..+|..+...|.++++++.+....+ ..+.| +... +.+ .+++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~~ 82 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-DLKD 82 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence 5899999999999999999999998888876544321 11122 1222 444 4789
Q ss_pred cCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHh
Q psy3240 97 SDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALID 144 (274)
Q Consensus 97 aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~ 144 (274)
||+|+.++|.....+.-+-++..+.++++++++....| +....+.+
T Consensus 83 aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~--~~~~~la~ 128 (282)
T PRK05808 83 ADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSS--LSITELAA 128 (282)
T ss_pred CCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHH
Confidence 99999999987776655555566778999988433333 44446655
No 99
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.58 E-value=1.7e-07 Score=87.09 Aligned_cols=80 Identities=18% Similarity=0.365 Sum_probs=66.5
Q ss_pred CCCCCCCEEEEEccChH-HHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240 37 GPALQNSTVGIVGCGRI-GLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN 115 (274)
Q Consensus 37 g~~L~gktVGIIGlG~I-G~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~ 115 (274)
+.++.||++.|||.|.+ |+.+|..|...|+.+.+...++ .++.+.+++||+|+++++ +.++++
T Consensus 153 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t------------~~l~~~~~~ADIVV~avG----~~~~i~ 216 (285)
T PRK14189 153 GIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKT------------RDLAAHTRQADIVVAAVG----KRNVLT 216 (285)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCC------------CCHHHHhhhCCEEEEcCC----CcCccC
Confidence 56899999999999999 9999999999999776655432 268899999999999998 345787
Q ss_pred HHHHhcCCCCcEEEEcCCCc
Q psy3240 116 RARLESMKPGAILINTSRGQ 135 (274)
Q Consensus 116 ~~~l~~mk~gailINv~RG~ 135 (274)
.+ .+|+|+++||+|.-.
T Consensus 217 ~~---~ik~gavVIDVGin~ 233 (285)
T PRK14189 217 AD---MVKPGATVIDVGMNR 233 (285)
T ss_pred HH---HcCCCCEEEEccccc
Confidence 74 469999999999543
No 100
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=98.58 E-value=2.1e-07 Score=92.42 Aligned_cols=104 Identities=13% Similarity=0.178 Sum_probs=73.6
Q ss_pred CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-Hh-------------------hcC-Cccc-CHHHHhcccCEE
Q psy3240 43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-AD-------------------KRG-AEHT-NIDDLCKQSDFI 100 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~-------------------~~g-~~~~-sl~ell~~aDvV 100 (274)
++|||||+|.||.++|..|...|.++++|+++..... .. ..+ +... ++++++++||+|
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~V 84 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWI 84 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCEE
Confidence 5899999999999999999999998888887554322 11 012 3333 788999999999
Q ss_pred EEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhh
Q psy3240 101 IITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIAD 148 (274)
Q Consensus 101 il~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~ 148 (274)
+.++|...+.+..+-.+.-+.++++++ |.+++.++ ....+.+.+..
T Consensus 85 ieavpe~~~vk~~l~~~l~~~~~~~~i-I~SsTsgi-~~s~l~~~~~~ 130 (495)
T PRK07531 85 QESVPERLDLKRRVLAEIDAAARPDAL-IGSSTSGF-LPSDLQEGMTH 130 (495)
T ss_pred EEcCcCCHHHHHHHHHHHHhhCCCCcE-EEEcCCCC-CHHHHHhhcCC
Confidence 999998877676554455556677765 55555553 35566664443
No 101
>KOG1370|consensus
Probab=98.57 E-value=1.5e-07 Score=87.94 Aligned_cols=93 Identities=17% Similarity=0.287 Sum_probs=77.6
Q ss_pred CCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCCh-hHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhccHHH
Q psy3240 40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKP-EADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRAR 118 (274)
Q Consensus 40 L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~-~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~~~ 118 (274)
+.||.+.|.|+|.+|+..|+.|++||+++++-.-.+-.. ++...|++...++|+.++.|+++.+. ..+.+|..+.
T Consensus 212 ~aGKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~V~tm~ea~~e~difVTtT----Gc~dii~~~H 287 (434)
T KOG1370|consen 212 IAGKVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAMEGYEVTTLEEAIREVDIFVTTT----GCKDIITGEH 287 (434)
T ss_pred ecccEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHHhhccEeeeHHHhhhcCCEEEEcc----CCcchhhHHH
Confidence 679999999999999999999999999655543322222 26667888889999999999999854 5678899999
Q ss_pred HhcCCCCcEEEEcCCCch
Q psy3240 119 LESMKPGAILINTSRGQL 136 (274)
Q Consensus 119 l~~mk~gailINv~RG~i 136 (274)
|.+||.++|+.|++.-.+
T Consensus 288 ~~~mk~d~IvCN~Ghfd~ 305 (434)
T KOG1370|consen 288 FDQMKNDAIVCNIGHFDT 305 (434)
T ss_pred HHhCcCCcEEeccccccc
Confidence 999999999999998654
No 102
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=98.57 E-value=7.2e-08 Score=79.58 Aligned_cols=91 Identities=22% Similarity=0.348 Sum_probs=57.2
Q ss_pred CCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh--H-hhcCC-cccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240 40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--A-DKRGA-EHTNIDDLCKQSDFIIITSALTPDTHHLIN 115 (274)
Q Consensus 40 L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a-~~~g~-~~~sl~ell~~aDvVil~lPlt~~T~~li~ 115 (274)
-...+|+|||.|++|..+++.|+..|..+..++.|+.... + ...+. ...+++|+++++|++++++|.. ....+.
T Consensus 8 ~~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDd-aI~~va- 85 (127)
T PF10727_consen 8 AARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDD-AIAEVA- 85 (127)
T ss_dssp ----EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CC-HHHHHH-
T ss_pred CCccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechH-HHHHHH-
Confidence 3457899999999999999999999998878877765433 2 12222 3348889999999999999974 333332
Q ss_pred HHHHhc--CCCCcEEEEcC
Q psy3240 116 RARLES--MKPGAILINTS 132 (274)
Q Consensus 116 ~~~l~~--mk~gailINv~ 132 (274)
++.-.. .++|.+++-+|
T Consensus 86 ~~La~~~~~~~g~iVvHtS 104 (127)
T PF10727_consen 86 EQLAQYGAWRPGQIVVHTS 104 (127)
T ss_dssp HHHHCC--S-TT-EEEES-
T ss_pred HHHHHhccCCCCcEEEECC
Confidence 333333 68999999985
No 103
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.57 E-value=3.4e-07 Score=84.46 Aligned_cols=99 Identities=14% Similarity=0.238 Sum_probs=69.4
Q ss_pred CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-Hhh--------------cCC-------------ccc-CHHHH
Q psy3240 43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADK--------------RGA-------------EHT-NIDDL 93 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~--------------~g~-------------~~~-sl~el 93 (274)
++|+|||.|.||..+|..+...|.++++|+.+....+ +.+ .+. ... ++ +.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 82 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ES 82 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HH
Confidence 6899999999999999999999998888876544321 100 011 122 34 56
Q ss_pred hcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHh
Q psy3240 94 CKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALID 144 (274)
Q Consensus 94 l~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~ 144 (274)
+++||+|+.++|...+.+.-+-++.-+.++++++|+....|- ....+.+
T Consensus 83 ~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~--~~~~la~ 131 (291)
T PRK06035 83 LSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGI--MIAEIAT 131 (291)
T ss_pred hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCC--CHHHHHh
Confidence 789999999999876555544445556678999998776663 4455555
No 104
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=98.56 E-value=1.8e-07 Score=86.60 Aligned_cols=91 Identities=12% Similarity=0.255 Sum_probs=67.4
Q ss_pred CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-Hhhc--------------CCcc-cCHHHHhcccCEEEEcCCC
Q psy3240 43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKR--------------GAEH-TNIDDLCKQSDFIIITSAL 106 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~--------------g~~~-~sl~ell~~aDvVil~lPl 106 (274)
++|+|||+|.||..+|..|...|.++.+|++.....+ .... +... .++++.++.+|+|++++|.
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~ 81 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPS 81 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCH
Confidence 4799999999999999999999997777765433322 2222 2322 3778889999999999996
Q ss_pred CcccHHhccHHHHhcCCCCcEEEEcCCCc
Q psy3240 107 TPDTHHLINRARLESMKPGAILINTSRGQ 135 (274)
Q Consensus 107 t~~T~~li~~~~l~~mk~gailINv~RG~ 135 (274)
..++.++. +..+.+++++++|+++.|-
T Consensus 82 -~~~~~v~~-~l~~~~~~~~~vi~~~ngv 108 (325)
T PRK00094 82 -QALREVLK-QLKPLLPPDAPIVWATKGI 108 (325)
T ss_pred -HHHHHHHH-HHHhhcCCCCEEEEEeecc
Confidence 45666663 4556678999999997543
No 105
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.53 E-value=2.6e-07 Score=83.78 Aligned_cols=97 Identities=16% Similarity=0.390 Sum_probs=66.2
Q ss_pred EEEEEccChHHHHHHHHHccCCCe--EEEEeCCCCCh-h-H-hhc-CCcc-cCHHHHhcccCEEEEcCCCCcccHHhccH
Q psy3240 44 TVGIVGCGRIGLSVLEKLIPYKVS--KFLYTSRSKKP-E-A-DKR-GAEH-TNIDDLCKQSDFIIITSALTPDTHHLINR 116 (274)
Q Consensus 44 tVGIIGlG~IG~~iA~~L~~~G~~--vv~~~~r~~~~-~-a-~~~-g~~~-~sl~ell~~aDvVil~lPlt~~T~~li~~ 116 (274)
+|||||+|+||+++++.|...|.. .+.+++|+... . . ... ++.. .+..++++++|+|++++| ......++..
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~-p~~~~~vl~~ 80 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVR-PQIAEEVLRA 80 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeC-HHHHHHHHHH
Confidence 799999999999999999877742 23444444332 2 2 223 3444 378889999999999999 3455555532
Q ss_pred HHHhcCCCCcEEEEcCCCchhcHHHHHhhh
Q psy3240 117 ARLESMKPGAILINTSRGQLVDQEALIDFI 146 (274)
Q Consensus 117 ~~l~~mk~gailINv~RG~iVde~aL~~~L 146 (274)
+ .++++.++|.++-| +..+.|.+.+
T Consensus 81 --l-~~~~~~~vis~~ag--~~~~~l~~~~ 105 (258)
T PRK06476 81 --L-RFRPGQTVISVIAA--TDRAALLEWI 105 (258)
T ss_pred --h-ccCCCCEEEEECCC--CCHHHHHHHh
Confidence 3 25788999997733 6666666633
No 106
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=98.53 E-value=3.7e-07 Score=81.23 Aligned_cols=88 Identities=18% Similarity=0.319 Sum_probs=66.0
Q ss_pred CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh---HhhcCC--cccCHHHHhcccCEEEEcCCCCcccHHhccHH
Q psy3240 43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE---ADKRGA--EHTNIDDLCKQSDFIIITSALTPDTHHLINRA 117 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~---a~~~g~--~~~sl~ell~~aDvVil~lPlt~~T~~li~~~ 117 (274)
++++|+|.|+||..+|+++...|.++++..++.++.. +...+. +..+.++..+.+|+|++++|.. ....++ ++
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~-a~~~v~-~~ 79 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFE-AIPDVL-AE 79 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHH-HHHhHH-HH
Confidence 6899999999999999999999998887777766544 233333 3348899999999999999963 333332 44
Q ss_pred HHhcCCCCcEEEEcCC
Q psy3240 118 RLESMKPGAILINTSR 133 (274)
Q Consensus 118 ~l~~mk~gailINv~R 133 (274)
....+. |.++||+.-
T Consensus 80 l~~~~~-~KIvID~tn 94 (211)
T COG2085 80 LRDALG-GKIVIDATN 94 (211)
T ss_pred HHHHhC-CeEEEecCC
Confidence 555455 899999864
No 107
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.52 E-value=3.5e-07 Score=85.02 Aligned_cols=78 Identities=17% Similarity=0.364 Sum_probs=64.7
Q ss_pred CCCCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240 37 GPALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN 115 (274)
Q Consensus 37 g~~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~ 115 (274)
+.++.||+|+|||. |.||+++|.+|...|+.++++..++ .++.+.+++||+|+.+++... ++.
T Consensus 153 ~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t------------~~l~~~~~~ADIVI~avg~~~----~v~ 216 (284)
T PRK14179 153 NVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRT------------RNLAEVARKADILVVAIGRGH----FVT 216 (284)
T ss_pred CCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCC------------CCHHHHHhhCCEEEEecCccc----cCC
Confidence 67899999999999 9999999999999999777763322 168899999999999998643 355
Q ss_pred HHHHhcCCCCcEEEEcCC
Q psy3240 116 RARLESMKPGAILINTSR 133 (274)
Q Consensus 116 ~~~l~~mk~gailINv~R 133 (274)
... +|+|+++||+|-
T Consensus 217 ~~~---ik~GavVIDvgi 231 (284)
T PRK14179 217 KEF---VKEGAVVIDVGM 231 (284)
T ss_pred HHH---ccCCcEEEEecc
Confidence 444 799999999984
No 108
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=98.52 E-value=6.6e-07 Score=84.35 Aligned_cols=87 Identities=13% Similarity=0.126 Sum_probs=69.7
Q ss_pred HHHHHHHHccCCCeEEEEeCCCCCh-----h-HhhcCCccc-CHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCc
Q psy3240 54 GLSVLEKLIPYKVSKFLYTSRSKKP-----E-ADKRGAEHT-NIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGA 126 (274)
Q Consensus 54 G~~iA~~L~~~G~~vv~~~~r~~~~-----~-a~~~g~~~~-sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~ga 126 (274)
|+.||++|...|..+++|+++.... . ..+.|+..+ +..+++++||+|++|+|..+.++.++ ...++.+++|+
T Consensus 32 GspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl-~GLaa~L~~Ga 110 (341)
T TIGR01724 32 GSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIA-RTIIEHVPENA 110 (341)
T ss_pred HHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHHHH-HHHHhcCCCCC
Confidence 8999999999999888887543311 1 455677765 78999999999999999888888887 56889999999
Q ss_pred EEEEcCCCchhcHHH
Q psy3240 127 ILINTSRGQLVDQEA 141 (274)
Q Consensus 127 ilINv~RG~iVde~a 141 (274)
++||+|+.++.....
T Consensus 111 IVID~STIsP~t~~~ 125 (341)
T TIGR01724 111 VICNTCTVSPVVLYY 125 (341)
T ss_pred EEEECCCCCHHHHHH
Confidence 999999866544433
No 109
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.50 E-value=4.7e-07 Score=83.01 Aligned_cols=93 Identities=26% Similarity=0.459 Sum_probs=61.0
Q ss_pred CEEEEEccChHHHHHHHHHccC--CCeEEEEeCCCCChh---HhhcCCcc-cCHHHHhcccCEEEEcCCCCcccHHhccH
Q psy3240 43 STVGIVGCGRIGLSVLEKLIPY--KVSKFLYTSRSKKPE---ADKRGAEH-TNIDDLCKQSDFIIITSALTPDTHHLINR 116 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~~L~~~--G~~vv~~~~r~~~~~---a~~~g~~~-~sl~ell~~aDvVil~lPlt~~T~~li~~ 116 (274)
++|||||+|.||+.+++.+... +++.+...++..... ....+... .++++++.++|+|++|+|.... ..+
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~~~~-~~~--- 77 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASVNAV-EEV--- 77 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCChHHH-HHH---
Confidence 4899999999999999998764 565555455544322 23344443 4899998999999999874222 111
Q ss_pred HHHhcCCCCcEEEEcCCCchhcHH
Q psy3240 117 ARLESMKPGAILINTSRGQLVDQE 140 (274)
Q Consensus 117 ~~l~~mk~gailINv~RG~iVde~ 140 (274)
....++.|.-++.++.|.+.|.+
T Consensus 78 -~~~al~~Gk~Vvv~s~gAl~d~~ 100 (265)
T PRK13304 78 -VPKSLENGKDVIIMSVGALADKE 100 (265)
T ss_pred -HHHHHHcCCCEEEEchHHhcCHH
Confidence 12234556666677777776643
No 110
>PRK07680 late competence protein ComER; Validated
Probab=98.49 E-value=5.1e-07 Score=82.58 Aligned_cols=102 Identities=18% Similarity=0.300 Sum_probs=70.0
Q ss_pred CEEEEEccChHHHHHHHHHccCCC----eEEEEeCCCCChh-H-hhc-CCccc-CHHHHhcccCEEEEcCCCCcccHHhc
Q psy3240 43 STVGIVGCGRIGLSVLEKLIPYKV----SKFLYTSRSKKPE-A-DKR-GAEHT-NIDDLCKQSDFIIITSALTPDTHHLI 114 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~~L~~~G~----~vv~~~~r~~~~~-a-~~~-g~~~~-sl~ell~~aDvVil~lPlt~~T~~li 114 (274)
++|+|||+|+||+.+|+.|...|. .+.+++++..+.. . ... ++... +..+++..+|+|++++|. .....++
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~p-~~~~~vl 79 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVKP-LDIYPLL 79 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecCH-HHHHHHH
Confidence 369999999999999999987773 3444544332222 2 222 45443 788889999999999983 3455555
Q ss_pred cHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhh
Q psy3240 115 NRARLESMKPGAILINTSRGQLVDQEALIDFIAD 148 (274)
Q Consensus 115 ~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~ 148 (274)
++..+.++++.++|+++-| +..+.|.+.+..
T Consensus 80 -~~l~~~l~~~~~iis~~ag--~~~~~L~~~~~~ 110 (273)
T PRK07680 80 -QKLAPHLTDEHCLVSITSP--ISVEQLETLVPC 110 (273)
T ss_pred -HHHHhhcCCCCEEEEECCC--CCHHHHHHHcCC
Confidence 3455567888999999854 366777665543
No 111
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.47 E-value=2.2e-07 Score=76.76 Aligned_cols=99 Identities=16% Similarity=0.265 Sum_probs=70.4
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCCh-h--Hhhc---CCccc---CHHHHhcccCEEEEcCCCCc
Q psy3240 38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKP-E--ADKR---GAEHT---NIDDLCKQSDFIIITSALTP 108 (274)
Q Consensus 38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~-~--a~~~---g~~~~---sl~ell~~aDvVil~lPlt~ 108 (274)
.+++++++.|||.|.+|+.++..|...|++.+...+|+... . +... .+... ++.+.+.++|+|+.++|...
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~ 87 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGM 87 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTS
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCC
Confidence 37999999999999999999999999999856555565433 2 2333 22222 56667899999999999754
Q ss_pred ccHHhccHHHHhcCCCCc-EEEEcCCCchhcH
Q psy3240 109 DTHHLINRARLESMKPGA-ILINTSRGQLVDQ 139 (274)
Q Consensus 109 ~T~~li~~~~l~~mk~ga-ilINv~RG~iVde 139 (274)
. .+.++.++..++.. +++|++.-.-++.
T Consensus 88 ~---~i~~~~~~~~~~~~~~v~Dla~Pr~i~~ 116 (135)
T PF01488_consen 88 P---IITEEMLKKASKKLRLVIDLAVPRDIDP 116 (135)
T ss_dssp T---SSTHHHHTTTCHHCSEEEES-SS-SB-T
T ss_pred c---ccCHHHHHHHHhhhhceeccccCCCCCh
Confidence 3 67888887766544 9999986554443
No 112
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=98.47 E-value=5.9e-07 Score=89.59 Aligned_cols=94 Identities=17% Similarity=0.218 Sum_probs=69.7
Q ss_pred CCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-H-----------hhcC-------------Cccc-CHHHHhc
Q psy3240 42 NSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-A-----------DKRG-------------AEHT-NIDDLCK 95 (274)
Q Consensus 42 gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a-----------~~~g-------------~~~~-sl~ell~ 95 (274)
=++|||||+|.||..||..+...|.++++|+.+....+ . .+.| +... ++++ ++
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~ 83 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LA 83 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hC
Confidence 36799999999999999999999998888876544321 1 1223 1222 6655 56
Q ss_pred ccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEE-EcCCCch
Q psy3240 96 QSDFIIITSALTPDTHHLINRARLESMKPGAILI-NTSRGQL 136 (274)
Q Consensus 96 ~aDvVil~lPlt~~T~~li~~~~l~~mk~gailI-Nv~RG~i 136 (274)
+||+|+.++|...+.+..+-.+.-+.++++++|. |+|+-.+
T Consensus 84 ~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i 125 (503)
T TIGR02279 84 DAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSI 125 (503)
T ss_pred CCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCH
Confidence 9999999999988888876666666678888876 7877554
No 113
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=98.42 E-value=1.3e-06 Score=75.32 Aligned_cols=82 Identities=24% Similarity=0.406 Sum_probs=66.9
Q ss_pred CCCCCCEEEEEccChH-HHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhccH
Q psy3240 38 PALQNSTVGIVGCGRI-GLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINR 116 (274)
Q Consensus 38 ~~L~gktVGIIGlG~I-G~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~ 116 (274)
.+|.|++|.|||.|.| |..+|+.|+..|+++++.+++. .++.+.++++|+|+.+++.. . ++..
T Consensus 40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~------------~~l~~~l~~aDiVIsat~~~---~-ii~~ 103 (168)
T cd01080 40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT------------KNLKEHTKQADIVIVAVGKP---G-LVKG 103 (168)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc------------hhHHHHHhhCCEEEEcCCCC---c-eecH
Confidence 5799999999999996 8889999999999655555432 25778999999999999853 2 6777
Q ss_pred HHHhcCCCCcEEEEcCCCchhc
Q psy3240 117 ARLESMKPGAILINTSRGQLVD 138 (274)
Q Consensus 117 ~~l~~mk~gailINv~RG~iVd 138 (274)
+. ++++.++||+|.-.-+|
T Consensus 104 ~~---~~~~~viIDla~prdvd 122 (168)
T cd01080 104 DM---VKPGAVVIDVGINRVPD 122 (168)
T ss_pred HH---ccCCeEEEEccCCCccc
Confidence 75 47899999999877776
No 114
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.40 E-value=1.2e-06 Score=81.43 Aligned_cols=79 Identities=22% Similarity=0.355 Sum_probs=66.4
Q ss_pred CCCCCCCEEEEEccCh-HHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240 37 GPALQNSTVGIVGCGR-IGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN 115 (274)
Q Consensus 37 g~~L~gktVGIIGlG~-IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~ 115 (274)
+.+|.||++.|||.|. +|+.+|+.|...|+++++.++++ .++.+.+++||+|+.+++. .+++.
T Consensus 153 ~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t------------~~l~~~~~~ADIVIsAvg~----p~~i~ 216 (286)
T PRK14175 153 DIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS------------KDMASYLKDADVIVSAVGK----PGLVT 216 (286)
T ss_pred CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc------------hhHHHHHhhCCEEEECCCC----CcccC
Confidence 4589999999999998 99999999999999887777643 2578899999999999975 23577
Q ss_pred HHHHhcCCCCcEEEEcCCC
Q psy3240 116 RARLESMKPGAILINTSRG 134 (274)
Q Consensus 116 ~~~l~~mk~gailINv~RG 134 (274)
++. +|+|+++||+|.-
T Consensus 217 ~~~---vk~gavVIDvGi~ 232 (286)
T PRK14175 217 KDV---VKEGAVIIDVGNT 232 (286)
T ss_pred HHH---cCCCcEEEEcCCC
Confidence 664 5899999999953
No 115
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=98.33 E-value=2e-06 Score=85.86 Aligned_cols=94 Identities=23% Similarity=0.387 Sum_probs=72.7
Q ss_pred CCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc--C--------------------------
Q psy3240 39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT--N-------------------------- 89 (274)
Q Consensus 39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~--s-------------------------- 89 (274)
.+.+.++.|+|.|.+|...++.++.+|+.+++++.+..+.+ ++..|.... +
T Consensus 161 ~vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~ 240 (511)
T TIGR00561 161 KVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMEL 240 (511)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHH
Confidence 35578999999999999999999999998777777766544 555665431 1
Q ss_pred HHHHhcccCEEEEcC--CCCcccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240 90 IDDLCKQSDFIIITS--ALTPDTHHLINRARLESMKPGAILINTSR 133 (274)
Q Consensus 90 l~ell~~aDvVil~l--Plt~~T~~li~~~~l~~mk~gailINv~R 133 (274)
+.+.++++|+|+.++ |..+ ...++.++.++.||+|+++||++-
T Consensus 241 ~~e~~~~~DIVI~TalipG~~-aP~Lit~emv~~MKpGsvIVDlA~ 285 (511)
T TIGR00561 241 FAAQAKEVDIIITTALIPGKP-APKLITEEMVDSMKAGSVIVDLAA 285 (511)
T ss_pred HHHHhCCCCEEEECcccCCCC-CCeeehHHHHhhCCCCCEEEEeee
Confidence 445578899999887 3322 235788999999999999999974
No 116
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=98.27 E-value=4.3e-06 Score=78.35 Aligned_cols=98 Identities=14% Similarity=0.290 Sum_probs=67.4
Q ss_pred CCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCC-hh--HhhcCCccc---CHHHHhcccCEEEEcCCCCcccHHh
Q psy3240 40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKK-PE--ADKRGAEHT---NIDDLCKQSDFIIITSALTPDTHHL 113 (274)
Q Consensus 40 L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~-~~--a~~~g~~~~---sl~ell~~aDvVil~lPlt~~T~~l 113 (274)
+.+++|+|||.|.||+.+++.|+..|...+...+|+.. .. +...|.... ++.+.+.++|+|+.++|.... ..+
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~-~~~ 254 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHY-AKI 254 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCch-HHH
Confidence 78999999999999999999999877655554455432 22 455555433 456778899999999996443 233
Q ss_pred ccHHHHhcC-CCCcEEEEcCCCchhcH
Q psy3240 114 INRARLESM-KPGAILINTSRGQLVDQ 139 (274)
Q Consensus 114 i~~~~l~~m-k~gailINv~RG~iVde 139 (274)
+ +..++.. +++.++||++...-+|.
T Consensus 255 ~-~~~~~~~~~~~~~viDlavPrdi~~ 280 (311)
T cd05213 255 V-ERAMKKRSGKPRLIVDLAVPRDIEP 280 (311)
T ss_pred H-HHHHhhCCCCCeEEEEeCCCCCCch
Confidence 3 3333333 36889999996444443
No 117
>KOG2380|consensus
Probab=98.27 E-value=2.4e-06 Score=81.01 Aligned_cols=105 Identities=19% Similarity=0.427 Sum_probs=78.6
Q ss_pred CCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCcc-cCHHHHh-cccCEEEEcCCCCcccHHhccHHH
Q psy3240 42 NSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEH-TNIDDLC-KQSDFIIITSALTPDTHHLINRAR 118 (274)
Q Consensus 42 gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~-~sl~ell-~~aDvVil~lPlt~~T~~li~~~~ 118 (274)
-++|||||+|+||+-+|+.+...|..++ ..+|+.-.. +...|... ..+.+++ +.+|+|++|+.. ..+..++..=-
T Consensus 52 tl~IaIIGfGnmGqflAetli~aGh~li-~hsRsdyssaa~~yg~~~ft~lhdlcerhpDvvLlctsi-lsiekilatyp 129 (480)
T KOG2380|consen 52 TLVIAIIGFGNMGQFLAETLIDAGHGLI-CHSRSDYSSAAEKYGSAKFTLLHDLCERHPDVVLLCTSI-LSIEKILATYP 129 (480)
T ss_pred ceEEEEEecCcHHHHHHHHHHhcCceeE-ecCcchhHHHHHHhcccccccHHHHHhcCCCEEEEEehh-hhHHHHHHhcC
Confidence 3579999999999999999999999544 445555444 55666654 3677766 469999999863 34555554445
Q ss_pred HhcCCCCcEEEEcCCCchhcHHHHHhhhhh
Q psy3240 119 LESMKPGAILINTSRGQLVDQEALIDFIAD 148 (274)
Q Consensus 119 l~~mk~gailINv~RG~iVde~aL~~~L~~ 148 (274)
++++|.|++++++-+-+.-..+++.+.|.+
T Consensus 130 fqrlrrgtlfvdvlSvKefek~lfekYLPk 159 (480)
T KOG2380|consen 130 FQRLRRGTLFVDVLSVKEFEKELFEKYLPK 159 (480)
T ss_pred chhhccceeEeeeeecchhHHHHHHHhCcc
Confidence 677899999999999887788888886654
No 118
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=98.26 E-value=5.8e-06 Score=78.76 Aligned_cols=92 Identities=13% Similarity=0.104 Sum_probs=70.5
Q ss_pred HHHHHHHHccCCCeEEEEeCCCCC-----hh-HhhcCCccc-CHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCc
Q psy3240 54 GLSVLEKLIPYKVSKFLYTSRSKK-----PE-ADKRGAEHT-NIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGA 126 (274)
Q Consensus 54 G~~iA~~L~~~G~~vv~~~~r~~~-----~~-a~~~g~~~~-sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~ga 126 (274)
|..+|++|...|.++++|+++... .. ....|+... +..+++++||+|++++|....++.++. +..+.+++++
T Consensus 32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl~-~L~~~L~~g~ 110 (342)
T PRK12557 32 GSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIAK-NILPHLPENA 110 (342)
T ss_pred HHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHHH-HHHhhCCCCC
Confidence 899999999999977788765431 11 345676654 788899999999999996554777774 6778899999
Q ss_pred EEEEcCCCchhcH-HHHHhhh
Q psy3240 127 ILINTSRGQLVDQ-EALIDFI 146 (274)
Q Consensus 127 ilINv~RG~iVde-~aL~~~L 146 (274)
++||+++++.... +.+.+.+
T Consensus 111 IVId~ST~~~~~~s~~l~~~l 131 (342)
T PRK12557 111 VICNTCTVSPVVLYYSLEGEL 131 (342)
T ss_pred EEEEecCCCHHHHHHHHHHHh
Confidence 9999999987765 5665644
No 119
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.25 E-value=6.8e-06 Score=76.49 Aligned_cols=77 Identities=19% Similarity=0.332 Sum_probs=64.3
Q ss_pred CCCCCCCEEEEEccCh-HHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240 37 GPALQNSTVGIVGCGR-IGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN 115 (274)
Q Consensus 37 g~~L~gktVGIIGlG~-IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~ 115 (274)
+.++.||++.|||.|. +|+.+|..|...|+.+.+..+++. ++.+.+++||+|+.+++-. +++.
T Consensus 154 ~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T~------------~l~~~~~~ADIvi~avG~p----~~v~ 217 (285)
T PRK10792 154 GIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFTK------------NLRHHVRNADLLVVAVGKP----GFIP 217 (285)
T ss_pred CCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCCC------------CHHHHHhhCCEEEEcCCCc----cccc
Confidence 5689999999999998 999999999999998777765532 5889999999999999532 3466
Q ss_pred HHHHhcCCCCcEEEEcC
Q psy3240 116 RARLESMKPGAILINTS 132 (274)
Q Consensus 116 ~~~l~~mk~gailINv~ 132 (274)
.+. +|+|+++||+|
T Consensus 218 ~~~---vk~gavVIDvG 231 (285)
T PRK10792 218 GEW---IKPGAIVIDVG 231 (285)
T ss_pred HHH---cCCCcEEEEcc
Confidence 544 59999999999
No 120
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=98.23 E-value=1.7e-06 Score=74.99 Aligned_cols=98 Identities=17% Similarity=0.300 Sum_probs=65.3
Q ss_pred EEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-H----h-------hcC-------------Ccc-cCHHHHhccc
Q psy3240 44 TVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-A----D-------KRG-------------AEH-TNIDDLCKQS 97 (274)
Q Consensus 44 tVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a----~-------~~g-------------~~~-~sl~ell~~a 97 (274)
+|+|||.|.||+.+|..+...|+++++|+.+..... + . ..+ +.. .+++++. .|
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~a 79 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DA 79 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TE
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hh
Confidence 699999999999999999999998888887554221 0 0 111 112 3788887 99
Q ss_pred CEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHh
Q psy3240 98 DFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALID 144 (274)
Q Consensus 98 DvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~ 144 (274)
|+|+=++|..-+.+.-+-++.-+.++++++|...+++ .....|.+
T Consensus 80 dlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSs--l~i~~la~ 124 (180)
T PF02737_consen 80 DLVIEAIPEDLELKQELFAELDEICPPDTILASNTSS--LSISELAA 124 (180)
T ss_dssp SEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SS--S-HHHHHT
T ss_pred heehhhccccHHHHHHHHHHHHHHhCCCceEEecCCC--CCHHHHHh
Confidence 9999999988777776666777778899887544332 44455555
No 121
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=98.22 E-value=3e-06 Score=71.58 Aligned_cols=90 Identities=19% Similarity=0.381 Sum_probs=61.0
Q ss_pred EEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-Hhh--c------CC------cc-cCHHHHhcccCEEEEcCCCC
Q psy3240 44 TVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADK--R------GA------EH-TNIDDLCKQSDFIIITSALT 107 (274)
Q Consensus 44 tVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~--~------g~------~~-~sl~ell~~aDvVil~lPlt 107 (274)
+|+|+|.|++|.++|..|...|.++.+|.++..... ... . +. .. .+++++++.+|+|++++|..
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs~ 80 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPSQ 80 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-GG
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccHH
Confidence 699999999999999999999987777665432211 111 1 11 11 37999999999999999953
Q ss_pred cccHHhccHHHHhcCCCCcEEEEcCCCc
Q psy3240 108 PDTHHLINRARLESMKPGAILINTSRGQ 135 (274)
Q Consensus 108 ~~T~~li~~~~l~~mk~gailINv~RG~ 135 (274)
..+.++ ++....++++..+|++..|=
T Consensus 81 -~~~~~~-~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 81 -AHREVL-EQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp -GHHHHH-HHHTTTSHTT-EEEETS-SE
T ss_pred -HHHHHH-HHHhhccCCCCEEEEecCCc
Confidence 445454 45666778999999998664
No 122
>PRK06444 prephenate dehydrogenase; Provisional
Probab=98.21 E-value=3.6e-06 Score=74.39 Aligned_cols=62 Identities=19% Similarity=0.262 Sum_probs=47.4
Q ss_pred CEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhccHHHHhc
Q psy3240 43 STVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLES 121 (274)
Q Consensus 43 ktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~ 121 (274)
++++|||- |.||+.+++.++..|+.+. +++||+|++|+|.. .+..++ +.
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~------------------------~~~~DlVilavPv~-~~~~~i-----~~ 50 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVY------------------------IKKADHAFLSVPID-AALNYI-----ES 50 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEE------------------------ECCCCEEEEeCCHH-HHHHHH-----HH
Confidence 37999997 9999999999999999643 36899999999963 333333 33
Q ss_pred CCCCcEEEEcCCCch
Q psy3240 122 MKPGAILINTSRGQL 136 (274)
Q Consensus 122 mk~gailINv~RG~i 136 (274)
+. .+++|+++-+.
T Consensus 51 ~~--~~v~Dv~SvK~ 63 (197)
T PRK06444 51 YD--NNFVEISSVKW 63 (197)
T ss_pred hC--CeEEeccccCH
Confidence 33 37999998664
No 123
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=98.20 E-value=3.2e-06 Score=82.40 Aligned_cols=98 Identities=21% Similarity=0.396 Sum_probs=68.9
Q ss_pred CCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCCh-h--HhhcCCcc---cCHHHHhcccCEEEEcCCCCcccHH
Q psy3240 39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKP-E--ADKRGAEH---TNIDDLCKQSDFIIITSALTPDTHH 112 (274)
Q Consensus 39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~-~--a~~~g~~~---~sl~ell~~aDvVil~lPlt~~T~~ 112 (274)
++.|++|+|+|.|.||+.+++.|+..|...+.+.+++... . +...+... .++.+.+..+|+|+.+++. +..
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s---~~~ 253 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGA---PHP 253 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCC---CCc
Confidence 5889999999999999999999999995444444444332 2 33444322 2567788999999999764 445
Q ss_pred hccHHHHhcCC----CCcEEEEcCCCchhcH
Q psy3240 113 LINRARLESMK----PGAILINTSRGQLVDQ 139 (274)
Q Consensus 113 li~~~~l~~mk----~gailINv~RG~iVde 139 (274)
+++++.++.+. .+.+++|.+.-.=+|.
T Consensus 254 ii~~e~l~~~~~~~~~~~~viDla~Prdid~ 284 (417)
T TIGR01035 254 IVSKEDVERALRERTRPLFIIDIAVPRDVDP 284 (417)
T ss_pred eEcHHHHHHHHhcCCCCeEEEEeCCCCCCCh
Confidence 67877776642 3469999985443443
No 124
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=98.18 E-value=5e-06 Score=71.29 Aligned_cols=81 Identities=21% Similarity=0.392 Sum_probs=56.8
Q ss_pred CCCCCCCEEEEEccC-hHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240 37 GPALQNSTVGIVGCG-RIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN 115 (274)
Q Consensus 37 g~~L~gktVGIIGlG-~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~ 115 (274)
+.++.||++.|||-+ .+|+.+|..|...|+.+...+.++ .++++.+++||+|+.++.- .+++.
T Consensus 31 ~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T------------~~l~~~~~~ADIVVsa~G~----~~~i~ 94 (160)
T PF02882_consen 31 GIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT------------KNLQEITRRADIVVSAVGK----PNLIK 94 (160)
T ss_dssp T-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS------------SSHHHHHTTSSEEEE-SSS----TT-B-
T ss_pred CCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC------------CcccceeeeccEEeeeecc----ccccc
Confidence 468999999999998 599999999999999777766544 2578899999999999863 34565
Q ss_pred HHHHhcCCCCcEEEEcCCCch
Q psy3240 116 RARLESMKPGAILINTSRGQL 136 (274)
Q Consensus 116 ~~~l~~mk~gailINv~RG~i 136 (274)
.+ .+|||+++||++.-..
T Consensus 95 ~~---~ik~gavVIDvG~~~~ 112 (160)
T PF02882_consen 95 AD---WIKPGAVVIDVGINYV 112 (160)
T ss_dssp GG---GS-TTEEEEE--CEEE
T ss_pred cc---cccCCcEEEecCCccc
Confidence 54 4599999999987543
No 125
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.17 E-value=7.6e-06 Score=75.34 Aligned_cols=101 Identities=19% Similarity=0.312 Sum_probs=69.0
Q ss_pred CEEEEEccChHHHHHHHHHccCC----CeEEEEeCCCCChh---Hhhc-CCcc-cCHHHHhcccCEEEEcCCCCcccHHh
Q psy3240 43 STVGIVGCGRIGLSVLEKLIPYK----VSKFLYTSRSKKPE---ADKR-GAEH-TNIDDLCKQSDFIIITSALTPDTHHL 113 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~~L~~~G----~~vv~~~~r~~~~~---a~~~-g~~~-~sl~ell~~aDvVil~lPlt~~T~~l 113 (274)
.+|+|||+|+||+++|+.|...| .++++++++..... .... +... .+..++++++|+|++++|. .....+
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavpp-~~~~~v 80 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVPP-LAVLPL 80 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecCH-HHHHHH
Confidence 47999999999999999998777 45566665543221 1222 2332 4778889999999999994 334444
Q ss_pred ccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhh
Q psy3240 114 INRARLESMKPGAILINTSRGQLVDQEALIDFIA 147 (274)
Q Consensus 114 i~~~~l~~mk~gailINv~RG~iVde~aL~~~L~ 147 (274)
+ .+..+.++++..+|.+.-| +..+.|.+.+.
T Consensus 81 l-~~l~~~l~~~~~ivS~~aG--i~~~~l~~~~~ 111 (277)
T PRK06928 81 L-KDCAPVLTPDRHVVSIAAG--VSLDDLLEITP 111 (277)
T ss_pred H-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence 4 2344456788899988766 55556766553
No 126
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.16 E-value=9.6e-06 Score=75.41 Aligned_cols=79 Identities=24% Similarity=0.405 Sum_probs=63.8
Q ss_pred CCCCCCCEEEEEccCh-HHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240 37 GPALQNSTVGIVGCGR-IGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN 115 (274)
Q Consensus 37 g~~L~gktVGIIGlG~-IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~ 115 (274)
+.++.||++.|||.|. .|+++|..|...|+++.+++++. .++.+.+++||+|+.+++ .+. +++
T Consensus 154 ~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t------------~~L~~~~~~aDIvI~AtG-~~~---~v~ 217 (283)
T PRK14192 154 NIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRT------------QNLPELVKQADIIVGAVG-KPE---LIK 217 (283)
T ss_pred CCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc------------hhHHHHhccCCEEEEccC-CCC---cCC
Confidence 5689999999999998 99999999999999666665422 257777899999999996 333 576
Q ss_pred HHHHhcCCCCcEEEEcCCC
Q psy3240 116 RARLESMKPGAILINTSRG 134 (274)
Q Consensus 116 ~~~l~~mk~gailINv~RG 134 (274)
.+. +++|++++|++-.
T Consensus 218 ~~~---lk~gavViDvg~n 233 (283)
T PRK14192 218 KDW---IKQGAVVVDAGFH 233 (283)
T ss_pred HHH---cCCCCEEEEEEEe
Confidence 655 6999999999843
No 127
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=98.16 E-value=1e-05 Score=73.81 Aligned_cols=87 Identities=16% Similarity=0.235 Sum_probs=56.2
Q ss_pred CCCEEEEEccChHHHHHHHHHccCCC---eEEEEeCCCCChhHhhcCCcc-cCHHHHhcccCEEEEcCCCCcccHHhccH
Q psy3240 41 QNSTVGIVGCGRIGLSVLEKLIPYKV---SKFLYTSRSKKPEADKRGAEH-TNIDDLCKQSDFIIITSALTPDTHHLINR 116 (274)
Q Consensus 41 ~gktVGIIGlG~IG~~iA~~L~~~G~---~vv~~~~r~~~~~a~~~g~~~-~sl~ell~~aDvVil~lPlt~~T~~li~~ 116 (274)
..++|+|||+|+||+++++.|...+. +.+...++.... .+... .+..+++.+||+|++++|. ..++.++.
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~D~Vilavkp-~~~~~vl~- 75 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKN----TPFVYLQSNEELAKTCDIIVLAVKP-DLAGKVLL- 75 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhc----CCeEEeCChHHHHHhCCEEEEEeCH-HHHHHHHH-
Confidence 34689999999999999999987652 223333333211 23332 3677888899999999984 44555554
Q ss_pred HHHhcCCCCcEEEEcCC
Q psy3240 117 ARLESMKPGAILINTSR 133 (274)
Q Consensus 117 ~~l~~mk~gailINv~R 133 (274)
+..+.++++.++..++-
T Consensus 76 ~i~~~l~~~~iIS~~aG 92 (260)
T PTZ00431 76 EIKPYLGSKLLISICGG 92 (260)
T ss_pred HHHhhccCCEEEEEeCC
Confidence 33344555555555554
No 128
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.16 E-value=6.3e-06 Score=74.74 Aligned_cols=96 Identities=9% Similarity=0.252 Sum_probs=62.7
Q ss_pred CEEEEEccChHHHHHHHHHccCC---CeEEEEeCCCCChh-Hhh-cCCccc-CHHHHhcccCEEEEcCCCCcccHHhccH
Q psy3240 43 STVGIVGCGRIGLSVLEKLIPYK---VSKFLYTSRSKKPE-ADK-RGAEHT-NIDDLCKQSDFIIITSALTPDTHHLINR 116 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~~L~~~G---~~vv~~~~r~~~~~-a~~-~g~~~~-sl~ell~~aDvVil~lPlt~~T~~li~~ 116 (274)
++|+|||+|.||+.+|+.+...| ..+.+++++..... ... .++... +.+++++++|+|++++|.. ..+.++.
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~~-~~~~v~~- 80 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKPQ-VMEEVLS- 80 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCHH-HHHHHHH-
Confidence 57999999999999999998877 44555554433222 222 355443 7788889999999999853 3444442
Q ss_pred HHHhcCCCCcEEEEcCCCchhcHHHHHh
Q psy3240 117 ARLESMKPGAILINTSRGQLVDQEALID 144 (274)
Q Consensus 117 ~~l~~mk~gailINv~RG~iVde~aL~~ 144 (274)
+....+ +.++|.+.-|- ..+.+.+
T Consensus 81 ~l~~~~--~~~vvs~~~gi--~~~~l~~ 104 (267)
T PRK11880 81 ELKGQL--DKLVVSIAAGV--TLARLER 104 (267)
T ss_pred HHHhhc--CCEEEEecCCC--CHHHHHH
Confidence 222233 46777776553 4455555
No 129
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=98.15 E-value=5e-06 Score=81.04 Aligned_cols=93 Identities=20% Similarity=0.346 Sum_probs=66.0
Q ss_pred CCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCC-Chh--HhhcCCccc---CHHHHhcccCEEEEcCCCCcccHH
Q psy3240 39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSK-KPE--ADKRGAEHT---NIDDLCKQSDFIIITSALTPDTHH 112 (274)
Q Consensus 39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~-~~~--a~~~g~~~~---sl~ell~~aDvVil~lPlt~~T~~ 112 (274)
++.|++|+|+|.|.||+.+++.|+..|++.+...+++. +.. +...+.... ++.+.+..+|+|+.++|... .
T Consensus 179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~~---~ 255 (423)
T PRK00045 179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAPH---P 255 (423)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCCC---c
Confidence 58899999999999999999999999985444444443 322 344443332 45677889999999987533 4
Q ss_pred hccHHHHhcC-----CCCcEEEEcCCC
Q psy3240 113 LINRARLESM-----KPGAILINTSRG 134 (274)
Q Consensus 113 li~~~~l~~m-----k~gailINv~RG 134 (274)
++..+.++.+ .++.++||++--
T Consensus 256 ~i~~~~l~~~~~~~~~~~~vviDla~P 282 (423)
T PRK00045 256 IIGKGMVERALKARRHRPLLLVDLAVP 282 (423)
T ss_pred EEcHHHHHHHHhhccCCCeEEEEeCCC
Confidence 4666666543 356899999853
No 130
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=98.15 E-value=1.9e-05 Score=60.20 Aligned_cols=68 Identities=19% Similarity=0.347 Sum_probs=53.6
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhccHH
Q psy3240 38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRA 117 (274)
Q Consensus 38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~~ 117 (274)
.++.+++++|+|.|.+|+.+++.+...+...+..+++ |+++.+.+.. +.+.++
T Consensus 19 ~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r-----------------------di~i~~~~~~----~~~~~~ 71 (86)
T cd05191 19 KSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR-----------------------DILVTATPAG----VPVLEE 71 (86)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC-----------------------CEEEEcCCCC----CCchHH
Confidence 4689999999999999999999999885434444444 9999998753 334455
Q ss_pred HHhcCCCCcEEEEcC
Q psy3240 118 RLESMKPGAILINTS 132 (274)
Q Consensus 118 ~l~~mk~gailINv~ 132 (274)
..+.+++++++++++
T Consensus 72 ~~~~~~~~~~v~~~a 86 (86)
T cd05191 72 ATAKINEGAVVIDLA 86 (86)
T ss_pred HHHhcCCCCEEEecC
Confidence 678889999999874
No 131
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=98.15 E-value=4.1e-05 Score=68.85 Aligned_cols=91 Identities=15% Similarity=0.310 Sum_probs=67.8
Q ss_pred CCCCCCCEEEEEccChHHHHHHHHHccCCCe--E-EEEeCC----CCCh-------h--HhhcCC-cc-cCHHHHhcccC
Q psy3240 37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVS--K-FLYTSR----SKKP-------E--ADKRGA-EH-TNIDDLCKQSD 98 (274)
Q Consensus 37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~--v-v~~~~r----~~~~-------~--a~~~g~-~~-~sl~ell~~aD 98 (274)
|.+++++++.|+|.|.+|+.+|+.|...|++ . ++++++ ..+. . +...+. .. .++.+.++++|
T Consensus 20 g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~d 99 (226)
T cd05311 20 GKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGAD 99 (226)
T ss_pred CCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCC
Confidence 4578999999999999999999999999986 4 455544 1221 1 222211 11 36778888999
Q ss_pred EEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcC
Q psy3240 99 FIIITSALTPDTHHLINRARLESMKPGAILINTS 132 (274)
Q Consensus 99 vVil~lPlt~~T~~li~~~~l~~mk~gailINv~ 132 (274)
+|+.+.| .++++.+.++.|.++.++.+.+
T Consensus 100 vlIgaT~-----~G~~~~~~l~~m~~~~ivf~ls 128 (226)
T cd05311 100 VFIGVSR-----PGVVKKEMIKKMAKDPIVFALA 128 (226)
T ss_pred EEEeCCC-----CCCCCHHHHHhhCCCCEEEEeC
Confidence 9999887 2667788899999999988887
No 132
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.15 E-value=9.1e-06 Score=75.69 Aligned_cols=78 Identities=17% Similarity=0.368 Sum_probs=64.8
Q ss_pred CCCCCCCEEEEEccCh-HHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240 37 GPALQNSTVGIVGCGR-IGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN 115 (274)
Q Consensus 37 g~~L~gktVGIIGlG~-IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~ 115 (274)
+.++.||++.|||.|. +|+.+|..|...|+.+.+.+.++. ++.+..++||+|+.++.- .+++.
T Consensus 159 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T~------------~l~~~~~~ADIvv~AvG~----p~~i~ 222 (287)
T PRK14176 159 GVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFTD------------DLKKYTLDADILVVATGV----KHLIK 222 (287)
T ss_pred CCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccCC------------CHHHHHhhCCEEEEccCC----ccccC
Confidence 5689999999999998 999999999999997777765432 578889999999997753 24676
Q ss_pred HHHHhcCCCCcEEEEcCC
Q psy3240 116 RARLESMKPGAILINTSR 133 (274)
Q Consensus 116 ~~~l~~mk~gailINv~R 133 (274)
.+. +|+|+++||+|.
T Consensus 223 ~~~---vk~gavVIDvGi 237 (287)
T PRK14176 223 ADM---VKEGAVIFDVGI 237 (287)
T ss_pred HHH---cCCCcEEEEecc
Confidence 664 589999999985
No 133
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=98.14 E-value=5.5e-06 Score=76.30 Aligned_cols=117 Identities=21% Similarity=0.305 Sum_probs=77.1
Q ss_pred CCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCC-Chh--HhhcCC----cc-cCHHHHhcccCEEEEcCCCCc
Q psy3240 37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSK-KPE--ADKRGA----EH-TNIDDLCKQSDFIIITSALTP 108 (274)
Q Consensus 37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~-~~~--a~~~g~----~~-~sl~ell~~aDvVil~lPlt~ 108 (274)
+.++.++++.|+|.|.+|++++..|...|+..+.+.+|+. +.+ +...+. .. .++.+.+..+|+|+.++|..-
T Consensus 118 ~~~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g~ 197 (278)
T PRK00258 118 GVDLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAGM 197 (278)
T ss_pred CCCCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCCC
Confidence 4578999999999999999999999999954444444443 222 222221 11 234567789999999999754
Q ss_pred ccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeeh
Q psy3240 109 DTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISIS 155 (274)
Q Consensus 109 ~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D 155 (274)
....-...-.++.++++++++|+.-... +..|.+.-+++|+..+|
T Consensus 198 ~~~~~~~~~~~~~l~~~~~v~DivY~P~--~T~ll~~A~~~G~~~~~ 242 (278)
T PRK00258 198 SGELPLPPLPLSLLRPGTIVYDMIYGPL--PTPFLAWAKAQGARTID 242 (278)
T ss_pred CCCCCCCCCCHHHcCCCCEEEEeecCCC--CCHHHHHHHHCcCeecC
Confidence 2110001112245688999999976442 35677777788887666
No 134
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=98.14 E-value=2.3e-05 Score=65.73 Aligned_cols=80 Identities=21% Similarity=0.320 Sum_probs=66.8
Q ss_pred CCCCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240 37 GPALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN 115 (274)
Q Consensus 37 g~~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~ 115 (274)
|.+++||+|.|+|- ...|+.+|..|...|+.+...+.++. ++++.+++||+|+.+++.. ++++
T Consensus 23 ~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~------------~l~~~v~~ADIVvsAtg~~----~~i~ 86 (140)
T cd05212 23 GVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTI------------QLQSKVHDADVVVVGSPKP----EKVP 86 (140)
T ss_pred CCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCc------------CHHHHHhhCCEEEEecCCC----CccC
Confidence 57899999999997 57899999999999997777764432 6788999999999999854 5577
Q ss_pred HHHHhcCCCCcEEEEcCCCc
Q psy3240 116 RARLESMKPGAILINTSRGQ 135 (274)
Q Consensus 116 ~~~l~~mk~gailINv~RG~ 135 (274)
.+. +|||++++|++...
T Consensus 87 ~~~---ikpGa~Vidvg~~~ 103 (140)
T cd05212 87 TEW---IKPGATVINCSPTK 103 (140)
T ss_pred HHH---cCCCCEEEEcCCCc
Confidence 766 58999999999766
No 135
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.14 E-value=8.1e-06 Score=75.78 Aligned_cols=79 Identities=18% Similarity=0.312 Sum_probs=66.8
Q ss_pred CCCCCCCEEEEEccC-hHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240 37 GPALQNSTVGIVGCG-RIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN 115 (274)
Q Consensus 37 g~~L~gktVGIIGlG-~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~ 115 (274)
+.+++|++|.|+|.+ ..|+.+|..|...|+.+.+..+++ .++.+.+++||+|+.+++.. +++.
T Consensus 147 ~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t------------~~L~~~~~~ADIvI~Avgk~----~lv~ 210 (279)
T PRK14178 147 KISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKT------------ENLKAELRQADILVSAAGKA----GFIT 210 (279)
T ss_pred CCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecCh------------hHHHHHHhhCCEEEECCCcc----cccC
Confidence 568999999999999 999999999999999777776543 25889999999999999632 6788
Q ss_pred HHHHhcCCCCcEEEEcCCC
Q psy3240 116 RARLESMKPGAILINTSRG 134 (274)
Q Consensus 116 ~~~l~~mk~gailINv~RG 134 (274)
++.+ |||+++||+|-.
T Consensus 211 ~~~v---k~GavVIDVgi~ 226 (279)
T PRK14178 211 PDMV---KPGATVIDVGIN 226 (279)
T ss_pred HHHc---CCCcEEEEeecc
Confidence 7775 999999999943
No 136
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=98.13 E-value=3.7e-06 Score=74.54 Aligned_cols=108 Identities=12% Similarity=0.150 Sum_probs=74.2
Q ss_pred CCCEEEEEccChHHHHHHHHH--ccCCCeEEEEeCCCCChh-HhhcCCc---ccCHHHHhcc--cCEEEEcCCCCcc---
Q psy3240 41 QNSTVGIVGCGRIGLSVLEKL--IPYKVSKFLYTSRSKKPE-ADKRGAE---HTNIDDLCKQ--SDFIIITSALTPD--- 109 (274)
Q Consensus 41 ~gktVGIIGlG~IG~~iA~~L--~~~G~~vv~~~~r~~~~~-a~~~g~~---~~sl~ell~~--aDvVil~lPlt~~--- 109 (274)
..++|+|||+|.+|+.+++.+ ...|++.+++.++.+... ....+.. ..++++++++ .|+|++++|....
T Consensus 83 ~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~~~i 162 (213)
T PRK05472 83 RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKIGGIPVYHIDELEEVVKENDIEIGILTVPAEAAQEV 162 (213)
T ss_pred CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEeCCeEEcCHHHHHHHHHHCCCCEEEEeCCchhHHHH
Confidence 346899999999999999863 357887776654433221 1112221 1267788765 9999999998654
Q ss_pred cHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhh
Q psy3240 110 THHLINRARLESMKPGAILINTSRGQLVDQEALIDFIAD 148 (274)
Q Consensus 110 T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~ 148 (274)
...+.......-|...++.+|+.+|.+|+.++|...|..
T Consensus 163 ~~~l~~~Gi~~il~~~p~~~~v~~~~~v~~~~l~~~l~~ 201 (213)
T PRK05472 163 ADRLVEAGIKGILNFAPVRLSVPEDVIVRNVDLTVELQT 201 (213)
T ss_pred HHHHHHcCCCEEeecCceeecCCCCCEEEEechHHHHHH
Confidence 222333333444666788899999999999999987765
No 137
>PRK06141 ornithine cyclodeaminase; Validated
Probab=98.12 E-value=7.8e-06 Score=76.72 Aligned_cols=110 Identities=20% Similarity=0.225 Sum_probs=68.0
Q ss_pred CCCCEEEEEccChHHHHHHHHHcc-CCCeEEEEeCCCCCh-h--Hhh---cC--Ccc-cCHHHHhcccCEEEEcCCCCcc
Q psy3240 40 LQNSTVGIVGCGRIGLSVLEKLIP-YKVSKFLYTSRSKKP-E--ADK---RG--AEH-TNIDDLCKQSDFIIITSALTPD 109 (274)
Q Consensus 40 L~gktVGIIGlG~IG~~iA~~L~~-~G~~vv~~~~r~~~~-~--a~~---~g--~~~-~sl~ell~~aDvVil~lPlt~~ 109 (274)
...++|+|||+|.+|+.+++.+.. ++.+.+.+++|+... . +.. .+ +.. .++++++++||+|+++.|..
T Consensus 123 ~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~-- 200 (314)
T PRK06141 123 KDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST-- 200 (314)
T ss_pred CCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC--
Confidence 357899999999999999986653 565555555555433 2 222 13 333 37889999999998888754
Q ss_pred cHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehh
Q psy3240 110 THHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISM 156 (274)
Q Consensus 110 T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~ 156 (274)
..++..+ .++||+ +||+.-........+-..+.++...++|-
T Consensus 201 -~pvl~~~---~l~~g~-~i~~ig~~~~~~~El~~~~~~~a~~~vD~ 242 (314)
T PRK06141 201 -EPLVRGE---WLKPGT-HLDLVGNFTPDMRECDDEAIRRASVYVDT 242 (314)
T ss_pred -CCEecHH---HcCCCC-EEEeeCCCCcccccCCHHHHhcCcEEEcC
Confidence 4566654 458998 55543333333333333333344556663
No 138
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.12 E-value=8.9e-06 Score=75.71 Aligned_cols=79 Identities=15% Similarity=0.245 Sum_probs=65.5
Q ss_pred CCCCCCCEEEEEccC-hHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240 37 GPALQNSTVGIVGCG-RIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN 115 (274)
Q Consensus 37 g~~L~gktVGIIGlG-~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~ 115 (274)
+.++.||+|.|||-| .+|+.+|..|...|+.+.+...++. ++.+.+++||+|+.+++. .+++.
T Consensus 152 ~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t~------------~l~~~~~~ADIvV~AvG~----p~~i~ 215 (285)
T PRK14191 152 HIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILTK------------DLSFYTQNADIVCVGVGK----PDLIK 215 (285)
T ss_pred CCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCcH------------HHHHHHHhCCEEEEecCC----CCcCC
Confidence 568999999999999 9999999999999997777654331 467899999999999963 34677
Q ss_pred HHHHhcCCCCcEEEEcCCC
Q psy3240 116 RARLESMKPGAILINTSRG 134 (274)
Q Consensus 116 ~~~l~~mk~gailINv~RG 134 (274)
.+.+ |+|+++||+|-.
T Consensus 216 ~~~v---k~GavVIDvGi~ 231 (285)
T PRK14191 216 ASMV---KKGAVVVDIGIN 231 (285)
T ss_pred HHHc---CCCcEEEEeecc
Confidence 7765 999999999853
No 139
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.10 E-value=1.4e-05 Score=71.28 Aligned_cols=99 Identities=10% Similarity=0.247 Sum_probs=63.4
Q ss_pred CCCEEEEEccChHHHHHHHHHccCC---Ce-EEEEeCCCCC-hh--HhhcCCcc-cCHHHHhcccCEEEEcCCCCcccHH
Q psy3240 41 QNSTVGIVGCGRIGLSVLEKLIPYK---VS-KFLYTSRSKK-PE--ADKRGAEH-TNIDDLCKQSDFIIITSALTPDTHH 112 (274)
Q Consensus 41 ~gktVGIIGlG~IG~~iA~~L~~~G---~~-vv~~~~r~~~-~~--a~~~g~~~-~sl~ell~~aDvVil~lPlt~~T~~ 112 (274)
+.++|+|||.|+||+.+++.+...| .+ +++++++..+ .. ....++.. .+++++++++|+|++++|.. ..+.
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~~-~~~~ 81 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPPS-AHEE 81 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCHH-HHHH
Confidence 4578999999999999999987655 33 3344433222 22 23345543 37889999999999999953 3344
Q ss_pred hccHHHHhcCCCCcEEEEcCCCchhcHHHHHh
Q psy3240 113 LINRARLESMKPGAILINTSRGQLVDQEALID 144 (274)
Q Consensus 113 li~~~~l~~mk~gailINv~RG~iVde~aL~~ 144 (274)
++. +.-+.++ +.++|.++-| +..+.|.+
T Consensus 82 v~~-~l~~~~~-~~~vis~~~g--i~~~~l~~ 109 (245)
T PRK07634 82 LLA-ELSPLLS-NQLVVTVAAG--IGPSYLEE 109 (245)
T ss_pred HHH-HHHhhcc-CCEEEEECCC--CCHHHHHH
Confidence 442 2222334 5688888655 44445555
No 140
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=98.10 E-value=1e-05 Score=75.85 Aligned_cols=102 Identities=17% Similarity=0.259 Sum_probs=69.4
Q ss_pred CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCc-----------------cc-CHHHHhcccCEEEEcC
Q psy3240 43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAE-----------------HT-NIDDLCKQSDFIIITS 104 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~-----------------~~-sl~ell~~aDvVil~l 104 (274)
++|+|||.|.||..+|..|...|.++++++++.........+.. .. +. +.++.+|+|++++
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil~v 81 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVLVTV 81 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEEEEe
Confidence 57999999999999999999999988777753221112223321 12 33 5678899999999
Q ss_pred CCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhh
Q psy3240 105 ALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIAD 148 (274)
Q Consensus 105 Plt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~ 148 (274)
|. +....++ .+..+.+++++++|.+.-| +...+.+.+.+.+
T Consensus 82 k~-~~~~~~~-~~l~~~~~~~~iii~~~nG-~~~~~~l~~~~~~ 122 (341)
T PRK08229 82 KS-AATADAA-AALAGHARPGAVVVSFQNG-VRNADVLRAALPG 122 (341)
T ss_pred cC-cchHHHH-HHHHhhCCCCCEEEEeCCC-CCcHHHHHHhCCC
Confidence 85 4455555 3456667899999988543 3344556554443
No 141
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=98.09 E-value=1.5e-05 Score=72.98 Aligned_cols=113 Identities=19% Similarity=0.267 Sum_probs=77.4
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh--Hhhc---CC-cccCHHHH-hcccCEEEEcCCCC--c
Q psy3240 38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--ADKR---GA-EHTNIDDL-CKQSDFIIITSALT--P 108 (274)
Q Consensus 38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a~~~---g~-~~~sl~el-l~~aDvVil~lPlt--~ 108 (274)
....+++++|+|.|.+|++++..|...|.++++++++..+.+ +... +. ...++++. +.++|+|+.++|.. +
T Consensus 113 ~~~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~ 192 (270)
T TIGR00507 113 PLRPNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSG 192 (270)
T ss_pred CCccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCC
Confidence 346689999999999999999999999986566554333222 1211 21 22344443 35799999999975 2
Q ss_pred ccHH-hccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeeh
Q psy3240 109 DTHH-LINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISIS 155 (274)
Q Consensus 109 ~T~~-li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D 155 (274)
.... .++ .+.++++.+++|+....... .|.+..+++|+.++|
T Consensus 193 ~~~~~~~~---~~~l~~~~~v~D~~y~p~~T--~ll~~A~~~G~~~vd 235 (270)
T TIGR00507 193 NIDEPPVP---AEKLKEGMVVYDMVYNPGET--PFLAEAKSLGTKTID 235 (270)
T ss_pred CCCCCCCC---HHHcCCCCEEEEeccCCCCC--HHHHHHHHCCCeeeC
Confidence 2211 222 24478999999998766433 688888899998887
No 142
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=98.08 E-value=1.1e-05 Score=71.60 Aligned_cols=90 Identities=16% Similarity=0.264 Sum_probs=60.0
Q ss_pred CEEEEEc-cChHHHHHHHHHccCCCeEEEEeCCCCChh-H-hh-------cCC----cccCHHHHhcccCEEEEcCCCCc
Q psy3240 43 STVGIVG-CGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-A-DK-------RGA----EHTNIDDLCKQSDFIIITSALTP 108 (274)
Q Consensus 43 ktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a-~~-------~g~----~~~sl~ell~~aDvVil~lPlt~ 108 (274)
++|+||| .|+||+.+|+.|...|.++++++++..+.. . .. .+. ...+..+.++++|+|++++|..
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~~- 79 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPWD- 79 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCHH-
Confidence 4799997 999999999999999987777755433322 1 11 121 1236678899999999999953
Q ss_pred ccHHhccHHHHhcCCCCcEEEEcCCCc
Q psy3240 109 DTHHLINRARLESMKPGAILINTSRGQ 135 (274)
Q Consensus 109 ~T~~li~~~~l~~mk~gailINv~RG~ 135 (274)
....++. +.-..++ +.++|++.-|-
T Consensus 80 ~~~~~l~-~l~~~l~-~~vvI~~~ngi 104 (219)
T TIGR01915 80 HVLKTLE-SLRDELS-GKLVISPVVPL 104 (219)
T ss_pred HHHHHHH-HHHHhcc-CCEEEEeccCc
Confidence 3334432 2223344 58999987653
No 143
>PLN00203 glutamyl-tRNA reductase
Probab=98.08 E-value=6.9e-06 Score=82.29 Aligned_cols=94 Identities=14% Similarity=0.312 Sum_probs=67.0
Q ss_pred CCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCCh-h--Hhhc-CC--cc---cCHHHHhcccCEEEEcCCCCcc
Q psy3240 39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKP-E--ADKR-GA--EH---TNIDDLCKQSDFIIITSALTPD 109 (274)
Q Consensus 39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~-~--a~~~-g~--~~---~sl~ell~~aDvVil~lPlt~~ 109 (274)
++.+++|+|||.|.||+.+++.|...|++.+...+|+... . +... +. .. .++.+.+.++|+|+.++|.
T Consensus 263 ~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s--- 339 (519)
T PLN00203 263 SHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSS--- 339 (519)
T ss_pred CCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCC---
Confidence 5889999999999999999999999997544444454333 2 2222 22 11 2566788999999998874
Q ss_pred cHHhccHHHHhcCCC-------CcEEEEcCCCc
Q psy3240 110 THHLINRARLESMKP-------GAILINTSRGQ 135 (274)
Q Consensus 110 T~~li~~~~l~~mk~-------gailINv~RG~ 135 (274)
...++.++.++.+++ ..++||.+=-.
T Consensus 340 ~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPR 372 (519)
T PLN00203 340 ETPLFLKEHVEALPPASDTVGGKRLFVDISVPR 372 (519)
T ss_pred CCCeeCHHHHHHhhhcccccCCCeEEEEeCCCC
Confidence 445678888877643 24899998543
No 144
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=98.06 E-value=1.1e-05 Score=80.72 Aligned_cols=95 Identities=23% Similarity=0.399 Sum_probs=72.2
Q ss_pred CCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc--CH-------------------------
Q psy3240 39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT--NI------------------------- 90 (274)
Q Consensus 39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~--sl------------------------- 90 (274)
...+.+|.|+|.|.+|...++.++.+|++++++|.+..+.+ +++.|++.. +.
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~ 241 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMAL 241 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHH
Confidence 35699999999999999999999999998778887776555 666777532 11
Q ss_pred -HHHhcccCEEEEcCCCCcc-cHHhccHHHHhcCCCCcEEEEcCC
Q psy3240 91 -DDLCKQSDFIIITSALTPD-THHLINRARLESMKPGAILINTSR 133 (274)
Q Consensus 91 -~ell~~aDvVil~lPlt~~-T~~li~~~~l~~mk~gailINv~R 133 (274)
.+.++.+|+|+.+...... ...++.++.++.||+|.+++++|-
T Consensus 242 ~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 242 FAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 1112569999998864221 234557889999999999999984
No 145
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=98.02 E-value=3.9e-05 Score=67.76 Aligned_cols=95 Identities=21% Similarity=0.195 Sum_probs=67.5
Q ss_pred CCCCCCCEEEEEccC-hHHHHHHHHHccCCCeEEEEeCCCCChhH--hh--cCCcc-c----CHHHHhcccCEEEEcCCC
Q psy3240 37 GPALQNSTVGIVGCG-RIGLSVLEKLIPYKVSKFLYTSRSKKPEA--DK--RGAEH-T----NIDDLCKQSDFIIITSAL 106 (274)
Q Consensus 37 g~~L~gktVGIIGlG-~IG~~iA~~L~~~G~~vv~~~~r~~~~~a--~~--~g~~~-~----sl~ell~~aDvVil~lPl 106 (274)
|.+++||++.|||-+ .+|+.+|..|...|+.+.+.+.+.-.... .. ..... . ++.+.+++||+|+.+++.
T Consensus 57 ~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG~ 136 (197)
T cd01079 57 GNRLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVPS 136 (197)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhCCEEEEccCC
Confidence 568999999999986 67999999999999987777533211100 00 00010 1 277899999999999984
Q ss_pred CcccHHh-ccHHHHhcCCCCcEEEEcCCCchhc
Q psy3240 107 TPDTHHL-INRARLESMKPGAILINTSRGQLVD 138 (274)
Q Consensus 107 t~~T~~l-i~~~~l~~mk~gailINv~RG~iVd 138 (274)
. ++ +..+.+ |+|+++||+|--.-+|
T Consensus 137 ~----~~~i~~d~i---k~GavVIDVGi~~dvd 162 (197)
T cd01079 137 P----NYKVPTELL---KDGAICINFASIKNFE 162 (197)
T ss_pred C----CCccCHHHc---CCCcEEEEcCCCcCcc
Confidence 3 34 666665 8999999999665444
No 146
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.02 E-value=2.1e-05 Score=73.14 Aligned_cols=78 Identities=21% Similarity=0.308 Sum_probs=64.2
Q ss_pred CCCCCCCEEEEEccC-hHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240 37 GPALQNSTVGIVGCG-RIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN 115 (274)
Q Consensus 37 g~~L~gktVGIIGlG-~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~ 115 (274)
+.++.||++.|||-+ .+|+.+|..|...|+.+.+...++. ++.+..++||+|+.++.- .+++.
T Consensus 152 ~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T~------------~l~~~~~~ADIvV~AvGk----p~~i~ 215 (281)
T PRK14183 152 EIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIFTK------------DLKAHTKKADIVIVGVGK----PNLIT 215 (281)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCc------------CHHHHHhhCCEEEEecCc----ccccC
Confidence 568999999999998 8999999999988997666544332 578899999999999863 35677
Q ss_pred HHHHhcCCCCcEEEEcCC
Q psy3240 116 RARLESMKPGAILINTSR 133 (274)
Q Consensus 116 ~~~l~~mk~gailINv~R 133 (274)
.+++ |+|+++||+|-
T Consensus 216 ~~~v---k~gavvIDvGi 230 (281)
T PRK14183 216 EDMV---KEGAIVIDIGI 230 (281)
T ss_pred HHHc---CCCcEEEEeec
Confidence 7665 89999999994
No 147
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=97.98 E-value=4.6e-05 Score=68.67 Aligned_cols=113 Identities=16% Similarity=0.256 Sum_probs=73.3
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCC--------Ch-h---H-hhcC-------CcccCHHHHh-cc
Q psy3240 38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSK--------KP-E---A-DKRG-------AEHTNIDDLC-KQ 96 (274)
Q Consensus 38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~--------~~-~---a-~~~g-------~~~~sl~ell-~~ 96 (274)
.+|+|++|+|.|+|++|+.+|+.|..+|++++.+.+... .. . . ...+ ....+.++++ .+
T Consensus 27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~~~~~i~~~~ 106 (227)
T cd01076 27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITNEELLELD 106 (227)
T ss_pred CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceecCCccceeec
Confidence 578999999999999999999999999998775555421 11 1 1 1112 1222334443 36
Q ss_pred cCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheee-hhhc
Q psy3240 97 SDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISI-SMVT 158 (274)
Q Consensus 97 aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~-D~~~ 158 (274)
||+++-|.+. +.++.+..++++ =.+++-.+-+.+ . ....+.|+++|+.++ |.+.
T Consensus 107 ~Dvlip~a~~-----~~i~~~~~~~l~-a~~I~egAN~~~-t-~~a~~~L~~rGi~~~PD~~a 161 (227)
T cd01076 107 CDILIPAALE-----NQITADNADRIK-AKIIVEAANGPT-T-PEADEILHERGVLVVPDILA 161 (227)
T ss_pred ccEEEecCcc-----CccCHHHHhhce-eeEEEeCCCCCC-C-HHHHHHHHHCCCEEEChHHh
Confidence 8999988865 446777777776 345555555555 4 445577888877653 4444
No 148
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.98 E-value=4.2e-05 Score=71.20 Aligned_cols=81 Identities=21% Similarity=0.477 Sum_probs=66.2
Q ss_pred CCCCCCCCEEEEEccC-hHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhc
Q psy3240 36 CGPALQNSTVGIVGCG-RIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLI 114 (274)
Q Consensus 36 ~g~~L~gktVGIIGlG-~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li 114 (274)
.|.++.||++.|||-+ .+|+.+|..|...|+.+.+..+++. ++.+..++||+|+.+++- .+++
T Consensus 151 ~~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T~------------~l~~~~~~ADIvI~AvG~----~~~i 214 (284)
T PRK14170 151 TGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRTK------------DLPQVAKEADILVVATGL----AKFV 214 (284)
T ss_pred hCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCC------------CHHHHHhhCCEEEEecCC----cCcc
Confidence 3578999999999986 6799999999989997777665442 578899999999999974 2467
Q ss_pred cHHHHhcCCCCcEEEEcCCCc
Q psy3240 115 NRARLESMKPGAILINTSRGQ 135 (274)
Q Consensus 115 ~~~~l~~mk~gailINv~RG~ 135 (274)
..+.+ |+|+++||+|.-.
T Consensus 215 ~~~~v---k~GavVIDvGin~ 232 (284)
T PRK14170 215 KKDYI---KPGAIVIDVGMDR 232 (284)
T ss_pred CHHHc---CCCCEEEEccCcc
Confidence 77665 8999999999654
No 149
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=97.97 E-value=1.9e-05 Score=76.87 Aligned_cols=92 Identities=23% Similarity=0.394 Sum_probs=68.8
Q ss_pred CCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh---HhhcCCccc---CHHHHhcccCEEEEcCCCCcccHH
Q psy3240 39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE---ADKRGAEHT---NIDDLCKQSDFIIITSALTPDTHH 112 (274)
Q Consensus 39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~---a~~~g~~~~---sl~ell~~aDvVil~lPlt~~T~~ 112 (274)
+|+++++.|||.|.||..+|+.|...|.+.+...+|+.... +.+.++.+. ++.+.+.++|+|+.++. +...
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTs---a~~~ 251 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTS---APHP 251 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecC---CCcc
Confidence 49999999999999999999999999987777777776543 667776665 45567899999999765 3445
Q ss_pred hccHHHHhcC---CCCcEEEEcCC
Q psy3240 113 LINRARLESM---KPGAILINTSR 133 (274)
Q Consensus 113 li~~~~l~~m---k~gailINv~R 133 (274)
++..+.+... ++.-++||.+=
T Consensus 252 ii~~~~ve~a~~~r~~~livDiav 275 (414)
T COG0373 252 IITREMVERALKIRKRLLIVDIAV 275 (414)
T ss_pred ccCHHHHHHHHhcccCeEEEEecC
Confidence 5655544333 12257888873
No 150
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=97.96 E-value=4e-05 Score=76.07 Aligned_cols=107 Identities=15% Similarity=0.185 Sum_probs=72.7
Q ss_pred CCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh--HhhcCCcccCHHHH--hcccCEEEEcCCCCcccHH
Q psy3240 37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--ADKRGAEHTNIDDL--CKQSDFIIITSALTPDTHH 112 (274)
Q Consensus 37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a~~~g~~~~sl~el--l~~aDvVil~lPlt~~T~~ 112 (274)
|.++++++++|+|.|.+|++++..|...|++++++++...+.+ +...+....+++++ +.++|+|++|+|....
T Consensus 327 ~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~~~~~~~~l~~~DiVInatP~g~~--- 403 (477)
T PRK09310 327 NIPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAFPLESLPELHRIDIIINCLPPSVT--- 403 (477)
T ss_pred CCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccceechhHhcccCCCCEEEEcCCCCCc---
Confidence 4578899999999999999999999999996666554332222 22222222333332 5789999999998643
Q ss_pred hccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeeh
Q psy3240 113 LINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISIS 155 (274)
Q Consensus 113 li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D 155 (274)
+. ..+. .+++|+.-..... .+.+..+++|+..+|
T Consensus 404 -~~-~~l~-----~~v~D~~Y~P~~T--~ll~~A~~~G~~~~~ 437 (477)
T PRK09310 404 -IP-KAFP-----PCVVDINTLPKHS--PYTQYARSQGSSIIY 437 (477)
T ss_pred -ch-hHHh-----hhEEeccCCCCCC--HHHHHHHHCcCEEEC
Confidence 22 2222 3899998766432 377878888887766
No 151
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.96 E-value=4.3e-05 Score=71.16 Aligned_cols=80 Identities=24% Similarity=0.364 Sum_probs=66.3
Q ss_pred CCCCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240 37 GPALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN 115 (274)
Q Consensus 37 g~~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~ 115 (274)
+.++.||++.|||- ..+|+.+|..|...|+.+.+.+.++ .++.+.+++||+|+.++.. .++++
T Consensus 153 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t------------~~l~~~~~~ADIvI~AvG~----p~~i~ 216 (284)
T PRK14190 153 NIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKT------------KNLAELTKQADILIVAVGK----PKLIT 216 (284)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCc------------hhHHHHHHhCCEEEEecCC----CCcCC
Confidence 56899999999997 5789999999999999777765443 2688899999999999953 34788
Q ss_pred HHHHhcCCCCcEEEEcCCCc
Q psy3240 116 RARLESMKPGAILINTSRGQ 135 (274)
Q Consensus 116 ~~~l~~mk~gailINv~RG~ 135 (274)
.+.+ |+|+++||+|.-.
T Consensus 217 ~~~i---k~gavVIDvGi~~ 233 (284)
T PRK14190 217 ADMV---KEGAVVIDVGVNR 233 (284)
T ss_pred HHHc---CCCCEEEEeeccc
Confidence 8776 8999999998654
No 152
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=97.96 E-value=2.6e-05 Score=71.95 Aligned_cols=96 Identities=20% Similarity=0.376 Sum_probs=67.6
Q ss_pred CEEEEEccChHHHHHHHHHccCCC---eEEEEeCCCCChh---HhhcCCc-ccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240 43 STVGIVGCGRIGLSVLEKLIPYKV---SKFLYTSRSKKPE---ADKRGAE-HTNIDDLCKQSDFIIITSALTPDTHHLIN 115 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~~L~~~G~---~vv~~~~r~~~~~---a~~~g~~-~~sl~ell~~aDvVil~lPlt~~T~~li~ 115 (274)
++|||||+|+||++++.-|...|. ..+.+.++..... ...+|+. ..+..++..++|+|++++.. + .-
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavKP--q----~~ 75 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVKP--Q----DL 75 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeCh--H----hH
Confidence 589999999999999999998882 3455555554332 4456666 34677899999999999964 2 12
Q ss_pred HHHHhcCC---CCcEEEEcCCCchhcHHHHHhhh
Q psy3240 116 RARLESMK---PGAILINTSRGQLVDQEALIDFI 146 (274)
Q Consensus 116 ~~~l~~mk---~gailINv~RG~iVde~aL~~~L 146 (274)
.+.++.++ ++.++|.++-|- ..+.|.++|
T Consensus 76 ~~vl~~l~~~~~~~lvISiaAGv--~~~~l~~~l 107 (266)
T COG0345 76 EEVLSKLKPLTKDKLVISIAAGV--SIETLERLL 107 (266)
T ss_pred HHHHHHhhcccCCCEEEEEeCCC--CHHHHHHHc
Confidence 34555555 789999998764 445555544
No 153
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=97.95 E-value=2e-05 Score=68.79 Aligned_cols=101 Identities=20% Similarity=0.277 Sum_probs=63.2
Q ss_pred CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcC---------------------Ccc-cCHHHHhcccCEE
Q psy3240 43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRG---------------------AEH-TNIDDLCKQSDFI 100 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g---------------------~~~-~sl~ell~~aDvV 100 (274)
++|+|||+|.+|..+|..|...|.+++++|....+-.....| ... .+.++.+++||++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~ 80 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVV 80 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEE
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceE
Confidence 689999999999999999999999888888655422211111 112 2677788999999
Q ss_pred EEcCCCCccc------HHhc--cHHHHhcCCCCcEEEEcCCCchhcHHHHH
Q psy3240 101 IITSALTPDT------HHLI--NRARLESMKPGAILINTSRGQLVDQEALI 143 (274)
Q Consensus 101 il~lPlt~~T------~~li--~~~~l~~mk~gailINv~RG~iVde~aL~ 143 (274)
++|+|..... ..+. -....+.++++.++|.-|+..+=-.+.+.
T Consensus 81 ~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~ 131 (185)
T PF03721_consen 81 FICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELL 131 (185)
T ss_dssp EE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHH
T ss_pred EEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhh
Confidence 9999843222 2222 23456678999999999997775555333
No 154
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.94 E-value=4.8e-05 Score=70.94 Aligned_cols=89 Identities=19% Similarity=0.341 Sum_probs=69.7
Q ss_pred CCCCCCCEEEEEccC-hHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240 37 GPALQNSTVGIVGCG-RIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN 115 (274)
Q Consensus 37 g~~L~gktVGIIGlG-~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~ 115 (274)
+.++.||++.|||-+ .+|+.+|..|...|+.+.+..+++. ++.+..++||+|+.++.- .+++.
T Consensus 154 ~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~T~------------~L~~~~~~ADIvV~AvGk----p~~i~ 217 (288)
T PRK14171 154 EPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSKTH------------NLSSITSKADIVVAAIGS----PLKLT 217 (288)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCC------------CHHHHHhhCCEEEEccCC----CCccC
Confidence 568999999999985 6799999999988997766665442 588899999999999973 25777
Q ss_pred HHHHhcCCCCcEEEEcC-----CCch---hcHHHHHh
Q psy3240 116 RARLESMKPGAILINTS-----RGQL---VDQEALID 144 (274)
Q Consensus 116 ~~~l~~mk~gailINv~-----RG~i---Vde~aL~~ 144 (274)
.+.+ |+|+++||+| .|++ ||.++..+
T Consensus 218 ~~~v---k~GavVIDvGin~~~~gkl~GDVd~~~v~~ 251 (288)
T PRK14171 218 AEYF---NPESIVIDVGINRISGNKIIGDVDFENVKS 251 (288)
T ss_pred HHHc---CCCCEEEEeeccccCCCCeECCccHHHHHh
Confidence 7765 8999999998 3455 45455444
No 155
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.92 E-value=4.3e-05 Score=71.21 Aligned_cols=80 Identities=20% Similarity=0.414 Sum_probs=65.9
Q ss_pred CCCCCCCEEEEEccC-hHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240 37 GPALQNSTVGIVGCG-RIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN 115 (274)
Q Consensus 37 g~~L~gktVGIIGlG-~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~ 115 (274)
+.++.||++.|||-+ .+|+.+|..|...|+.+.+..+++. ++.+..++||+|+.++.- .++++
T Consensus 150 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T~------------~l~~~~~~ADIvIsAvGk----p~~i~ 213 (287)
T PRK14173 150 GIPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKTQ------------DLPAVTRRADVLVVAVGR----PHLIT 213 (287)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCCC------------CHHHHHhhCCEEEEecCC----cCccC
Confidence 568999999999975 6899999999988997777665542 578899999999999963 25677
Q ss_pred HHHHhcCCCCcEEEEcCCCc
Q psy3240 116 RARLESMKPGAILINTSRGQ 135 (274)
Q Consensus 116 ~~~l~~mk~gailINv~RG~ 135 (274)
.+.+ |+|+++||+|.-.
T Consensus 214 ~~~v---k~GavVIDVGin~ 230 (287)
T PRK14173 214 PEMV---RPGAVVVDVGINR 230 (287)
T ss_pred HHHc---CCCCEEEEccCcc
Confidence 7765 8999999999644
No 156
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=97.91 E-value=3.4e-05 Score=75.35 Aligned_cols=92 Identities=15% Similarity=0.265 Sum_probs=66.1
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh---HhhcC-Cccc---CHHHHhcccCEEEEcCCCCccc
Q psy3240 38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE---ADKRG-AEHT---NIDDLCKQSDFIIITSALTPDT 110 (274)
Q Consensus 38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~---a~~~g-~~~~---sl~ell~~aDvVil~lPlt~~T 110 (274)
.++.|+++.|||.|.||+.+|+.|...|+..+...+|+.... +...+ .... ++.+.+.++|+|+.|++..
T Consensus 177 ~~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~--- 253 (414)
T PRK13940 177 DNISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVL--- 253 (414)
T ss_pred cCccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCC---
Confidence 358899999999999999999999999986677777765332 33333 3322 4567789999999998753
Q ss_pred HHhccHHHHhcCCCCcEEEEcCCC
Q psy3240 111 HHLINRARLESMKPGAILINTSRG 134 (274)
Q Consensus 111 ~~li~~~~l~~mk~gailINv~RG 134 (274)
..+|..+... .+..++||.+=-
T Consensus 254 ~~vi~~~~~~--~~~~~~iDLavP 275 (414)
T PRK13940 254 EYIVTCKYVG--DKPRVFIDISIP 275 (414)
T ss_pred CeeECHHHhC--CCCeEEEEeCCC
Confidence 3456655543 244688888743
No 157
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=97.91 E-value=6.6e-05 Score=68.74 Aligned_cols=101 Identities=17% Similarity=0.237 Sum_probs=67.4
Q ss_pred CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCc-----------cc-CHHHHhcccCEEEEcCCCCcc
Q psy3240 43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAE-----------HT-NIDDLCKQSDFIIITSALTPD 109 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~-----------~~-sl~ell~~aDvVil~lPlt~~ 109 (274)
++|+|||.|.||..+|..|...|.++.+++++....+ ..+.|.. .. +..++ +.+|+|++++|.. +
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~~-~ 78 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKAY-Q 78 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEecccc-c
Confidence 4799999999999999999988987777776444333 2233431 12 45555 8899999999953 4
Q ss_pred cHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhh
Q psy3240 110 THHLINRARLESMKPGAILINTSRGQLVDQEALIDFIA 147 (274)
Q Consensus 110 T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~ 147 (274)
+..++ +...+.+.+++.+|...-| +-.++.+.+.+.
T Consensus 79 ~~~~~-~~l~~~l~~~~~iv~~~nG-~~~~~~l~~~~~ 114 (304)
T PRK06522 79 LPAAL-PSLAPLLGPDTPVLFLQNG-VGHLEELAAYIG 114 (304)
T ss_pred HHHHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHhcC
Confidence 55554 2344556778888877666 223445555443
No 158
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.90 E-value=4.8e-05 Score=70.84 Aligned_cols=78 Identities=19% Similarity=0.330 Sum_probs=64.8
Q ss_pred CCCCCCCEEEEEccC-hHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240 37 GPALQNSTVGIVGCG-RIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN 115 (274)
Q Consensus 37 g~~L~gktVGIIGlG-~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~ 115 (274)
+.++.||++.|||-+ .+|+.+|..|...|+.+.+.+.++. ++.+..++||+|+.++.- .+++.
T Consensus 154 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T~------------~l~~~~~~ADIvIsAvGk----~~~i~ 217 (284)
T PRK14177 154 GIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKTQ------------NLPSIVRQADIIVGAVGK----PEFIK 217 (284)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCC------------CHHHHHhhCCEEEEeCCC----cCccC
Confidence 568999999999975 7899999999999997777765543 578889999999999863 34577
Q ss_pred HHHHhcCCCCcEEEEcCC
Q psy3240 116 RARLESMKPGAILINTSR 133 (274)
Q Consensus 116 ~~~l~~mk~gailINv~R 133 (274)
.+.+ |+|+++||+|-
T Consensus 218 ~~~i---k~gavVIDvGi 232 (284)
T PRK14177 218 ADWI---SEGAVLLDAGY 232 (284)
T ss_pred HHHc---CCCCEEEEecC
Confidence 7665 89999999995
No 159
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.89 E-value=4.9e-05 Score=70.70 Aligned_cols=78 Identities=22% Similarity=0.427 Sum_probs=64.7
Q ss_pred CCCCCCCEEEEEccC-hHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240 37 GPALQNSTVGIVGCG-RIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN 115 (274)
Q Consensus 37 g~~L~gktVGIIGlG-~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~ 115 (274)
+.++.||++.|||-+ .+|+.+|..|...|+.+.+..+++. ++.+..++||+|+.+++- .++++
T Consensus 151 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T~------------~l~~~~~~ADIvI~AvG~----p~~i~ 214 (282)
T PRK14169 151 DIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKTR------------NLKQLTKEADILVVAVGV----PHFIG 214 (282)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCCCC------------CHHHHHhhCCEEEEccCC----cCccC
Confidence 568999999999985 6799999999999997777665542 588899999999999974 24577
Q ss_pred HHHHhcCCCCcEEEEcCC
Q psy3240 116 RARLESMKPGAILINTSR 133 (274)
Q Consensus 116 ~~~l~~mk~gailINv~R 133 (274)
.+++ |+|+++||+|-
T Consensus 215 ~~~v---k~GavVIDvGi 229 (282)
T PRK14169 215 ADAV---KPGAVVIDVGI 229 (282)
T ss_pred HHHc---CCCcEEEEeec
Confidence 7765 89999999985
No 160
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.89 E-value=7.3e-05 Score=69.44 Aligned_cols=78 Identities=22% Similarity=0.458 Sum_probs=64.4
Q ss_pred CCCCCCCEEEEEccC-hHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240 37 GPALQNSTVGIVGCG-RIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN 115 (274)
Q Consensus 37 g~~L~gktVGIIGlG-~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~ 115 (274)
+.++.||++.|||-+ .+|+.+|..|...|+.+.+.++++. ++.+..++||+|+.+++- .+++.
T Consensus 153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T~------------~l~~~~~~ADIvIsAvGk----p~~i~ 216 (278)
T PRK14172 153 NIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKTK------------NLKEVCKKADILVVAIGR----PKFID 216 (278)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCC------------CHHHHHhhCCEEEEcCCC----cCccC
Confidence 568999999999975 6899999999999997777665432 588899999999999974 24677
Q ss_pred HHHHhcCCCCcEEEEcCC
Q psy3240 116 RARLESMKPGAILINTSR 133 (274)
Q Consensus 116 ~~~l~~mk~gailINv~R 133 (274)
.+.+ |+|+++||+|-
T Consensus 217 ~~~i---k~gavVIDvGi 231 (278)
T PRK14172 217 EEYV---KEGAIVIDVGT 231 (278)
T ss_pred HHHc---CCCcEEEEeec
Confidence 7764 89999999974
No 161
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=97.89 E-value=4.7e-05 Score=66.04 Aligned_cols=100 Identities=20% Similarity=0.176 Sum_probs=66.5
Q ss_pred CCCCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChh--Hhhc----CCc-----c---cCHHHHhcccCEEE
Q psy3240 37 GPALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPE--ADKR----GAE-----H---TNIDDLCKQSDFII 101 (274)
Q Consensus 37 g~~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a~~~----g~~-----~---~sl~ell~~aDvVi 101 (274)
|.+++++++.|+|. |.+|+.+++.|...|.++++++++..+.. .... +.. . .++.+.++++|+|+
T Consensus 23 ~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi 102 (194)
T cd01078 23 GKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVF 102 (194)
T ss_pred CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEE
Confidence 45789999999995 99999999999988986666654332221 1111 111 1 13346788999999
Q ss_pred EcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHH
Q psy3240 102 ITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQE 140 (274)
Q Consensus 102 l~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~ 140 (274)
.+.|....+ .. ..-...+++.+++|+.+...++.+
T Consensus 103 ~at~~g~~~--~~--~~~~~~~~~~vv~D~~~~~~~~~~ 137 (194)
T cd01078 103 AAGAAGVEL--LE--KLAWAPKPLAVAADVNAVPPVGIE 137 (194)
T ss_pred ECCCCCcee--ch--hhhcccCceeEEEEccCCCCCCcc
Confidence 999875541 11 111234568899999987766543
No 162
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=97.89 E-value=0.00011 Score=65.87 Aligned_cols=107 Identities=13% Similarity=0.183 Sum_probs=70.5
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCC----------Chh--Hhhc-CCcc------cCHHHHh-ccc
Q psy3240 38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSK----------KPE--ADKR-GAEH------TNIDDLC-KQS 97 (274)
Q Consensus 38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~----------~~~--a~~~-g~~~------~sl~ell-~~a 97 (274)
.+|.|++|.|.|+|++|+.+|+.|...|.+++...+... ... ..+. ++.. .+-++++ ..|
T Consensus 19 ~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 98 (217)
T cd05211 19 DSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDV 98 (217)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceeccc
Confidence 478999999999999999999999999997777666554 211 1111 1111 1223433 368
Q ss_pred CEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhhe
Q psy3240 98 DFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVI 152 (274)
Q Consensus 98 DvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~ 152 (274)
|+++-|.+.+ +++.+....++ =.+++-.+-+.+-+ .-.+.|+++|+.
T Consensus 99 DVlipaA~~~-----~i~~~~a~~l~-a~~V~e~AN~p~t~--~a~~~L~~~Gi~ 145 (217)
T cd05211 99 DIFAPCALGN-----VIDLENAKKLK-AKVVAEGANNPTTD--EALRILHERGIV 145 (217)
T ss_pred cEEeeccccC-----ccChhhHhhcC-ccEEEeCCCCCCCH--HHHHHHHHCCcE
Confidence 9999988753 67777777776 34566666666554 334556666554
No 163
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.88 E-value=5.2e-05 Score=70.98 Aligned_cols=80 Identities=18% Similarity=0.384 Sum_probs=65.6
Q ss_pred CCCCCCCEEEEEccC-hHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240 37 GPALQNSTVGIVGCG-RIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN 115 (274)
Q Consensus 37 g~~L~gktVGIIGlG-~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~ 115 (274)
|.++.||++.|||-+ .+|+.+|..|...|+.+.+..+++. ++.+..++||+|+.+++- + +++.
T Consensus 153 ~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T~------------~l~~~~~~ADIvIsAvGk-p---~~i~ 216 (297)
T PRK14186 153 QIDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSRTQ------------DLASITREADILVAAAGR-P---NLIG 216 (297)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCC------------CHHHHHhhCCEEEEccCC-c---CccC
Confidence 568999999999975 6799999999999997777655432 578899999999999973 2 4677
Q ss_pred HHHHhcCCCCcEEEEcCCCc
Q psy3240 116 RARLESMKPGAILINTSRGQ 135 (274)
Q Consensus 116 ~~~l~~mk~gailINv~RG~ 135 (274)
.+.+ |+|+++||+|--.
T Consensus 217 ~~~i---k~gavVIDvGin~ 233 (297)
T PRK14186 217 AEMV---KPGAVVVDVGIHR 233 (297)
T ss_pred HHHc---CCCCEEEEecccc
Confidence 7665 8999999998544
No 164
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=97.88 E-value=4.5e-05 Score=72.51 Aligned_cols=86 Identities=22% Similarity=0.268 Sum_probs=63.0
Q ss_pred EEEEccChHHHHHHHHHcc-CCCeEEEEeCCCCChh---HhhcCCc------------------cc-CHHHHhcccCEEE
Q psy3240 45 VGIVGCGRIGLSVLEKLIP-YKVSKFLYTSRSKKPE---ADKRGAE------------------HT-NIDDLCKQSDFII 101 (274)
Q Consensus 45 VGIIGlG~IG~~iA~~L~~-~G~~vv~~~~r~~~~~---a~~~g~~------------------~~-sl~ell~~aDvVi 101 (274)
|||+|+|.||+.+++.+.. -+++++++.+...... +...++. .. ++++++..+|+|+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv 80 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV 80 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence 6999999999999999764 4677776666433311 2222211 12 6899999999999
Q ss_pred EcCCCCcccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240 102 ITSALTPDTHHLINRARLESMKPGAILINTSR 133 (274)
Q Consensus 102 l~lPlt~~T~~li~~~~l~~mk~gailINv~R 133 (274)
.|.| .+.+..+++.+.+|+++++|+-.-.
T Consensus 81 e~Tp---~~~~~~na~~~~~~GakaVl~~~p~ 109 (333)
T TIGR01546 81 DATP---GGIGAKNKPLYEKAGVKAIFQGGEK 109 (333)
T ss_pred ECCC---CCCChhhHHHHHhCCcCEEEECCCC
Confidence 9876 5667889999999999999987543
No 165
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=97.87 E-value=0.00024 Score=70.59 Aligned_cols=105 Identities=13% Similarity=0.208 Sum_probs=71.0
Q ss_pred CEEEEEccChHHHHHHHHHccC--CCeEEEEeCCCCChhHhhc------------------C--Ccc-cCHHHHhcccCE
Q psy3240 43 STVGIVGCGRIGLSVLEKLIPY--KVSKFLYTSRSKKPEADKR------------------G--AEH-TNIDDLCKQSDF 99 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~~L~~~--G~~vv~~~~r~~~~~a~~~------------------g--~~~-~sl~ell~~aDv 99 (274)
++|+|||+|.+|..+|..|... |.+++++|....+-..... + ... .+.++.++.||+
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~adv 81 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADI 81 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCCE
Confidence 5799999999999999999865 5778888765443221111 1 112 256778899999
Q ss_pred EEEcCCCCc-----------ccHHhcc--HHHHhcCCCCcEEEEcCCCchhcHHHHHhhhh
Q psy3240 100 IIITSALTP-----------DTHHLIN--RARLESMKPGAILINTSRGQLVDQEALIDFIA 147 (274)
Q Consensus 100 Vil~lPlt~-----------~T~~li~--~~~l~~mk~gailINv~RG~iVde~aL~~~L~ 147 (274)
+++|+|... +...+.. ++.-+.++++.++|.-|+..+=-.+.+.+.|.
T Consensus 82 i~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~ 142 (473)
T PLN02353 82 VFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILT 142 (473)
T ss_pred EEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHH
Confidence 999997321 1112322 34566789999999999877656667766443
No 166
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=97.86 E-value=6.8e-05 Score=70.29 Aligned_cols=78 Identities=22% Similarity=0.400 Sum_probs=65.3
Q ss_pred CCCCCCCEEEEEccC-hHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240 37 GPALQNSTVGIVGCG-RIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN 115 (274)
Q Consensus 37 g~~L~gktVGIIGlG-~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~ 115 (274)
+.++.||++.|||-+ .+|+.+|..|...|+.+.+...++. ++++..++||+|+.++.- + +++.
T Consensus 162 ~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~T~------------nl~~~~~~ADIvv~AvGk-~---~~i~ 225 (299)
T PLN02516 162 GIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSRTP------------DPESIVREADIVIAAAGQ-A---MMIK 225 (299)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCC------------CHHHHHhhCCEEEEcCCC-c---CccC
Confidence 578999999999986 5799999999999997777765432 588899999999999864 2 6788
Q ss_pred HHHHhcCCCCcEEEEcCC
Q psy3240 116 RARLESMKPGAILINTSR 133 (274)
Q Consensus 116 ~~~l~~mk~gailINv~R 133 (274)
.+.+ |+|+++||+|-
T Consensus 226 ~~~v---k~gavVIDvGi 240 (299)
T PLN02516 226 GDWI---KPGAAVIDVGT 240 (299)
T ss_pred HHHc---CCCCEEEEeec
Confidence 7765 89999999984
No 167
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=97.86 E-value=3.9e-05 Score=71.11 Aligned_cols=78 Identities=24% Similarity=0.461 Sum_probs=64.3
Q ss_pred CCCCCCCEEEEEccCh-HHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240 37 GPALQNSTVGIVGCGR-IGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN 115 (274)
Q Consensus 37 g~~L~gktVGIIGlG~-IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~ 115 (274)
+-+|+||++.|||-++ +|+.+|..|...++.+.+...+++ ++.+..++||+|+.++- -.+++.
T Consensus 151 ~i~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T~------------~l~~~~k~ADIvv~AvG----~p~~i~ 214 (283)
T COG0190 151 GIDLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRTK------------DLASITKNADIVVVAVG----KPHFIK 214 (283)
T ss_pred CCCCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCCC------------CHHHHhhhCCEEEEecC----Cccccc
Confidence 5689999999999986 599999999999997777766543 57888999999999884 335666
Q ss_pred HHHHhcCCCCcEEEEcCC
Q psy3240 116 RARLESMKPGAILINTSR 133 (274)
Q Consensus 116 ~~~l~~mk~gailINv~R 133 (274)
++. .|+|+++||+|-
T Consensus 215 ~d~---vk~gavVIDVGi 229 (283)
T COG0190 215 ADM---VKPGAVVIDVGI 229 (283)
T ss_pred ccc---ccCCCEEEecCC
Confidence 554 599999999985
No 168
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.86 E-value=6.1e-05 Score=70.06 Aligned_cols=78 Identities=18% Similarity=0.322 Sum_probs=64.6
Q ss_pred CCCCCCCEEEEEccC-hHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240 37 GPALQNSTVGIVGCG-RIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN 115 (274)
Q Consensus 37 g~~L~gktVGIIGlG-~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~ 115 (274)
+.++.||++.|||-+ .+|+.+|..|...|+.+.+...++. ++.+..++||+|+.++.- .+++.
T Consensus 152 ~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T~------------nl~~~~~~ADIvIsAvGk----p~~i~ 215 (282)
T PRK14166 152 EIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTK------------DLSLYTRQADLIIVAAGC----VNLLR 215 (282)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCC------------CHHHHHhhCCEEEEcCCC----cCccC
Confidence 568999999999985 6799999999988997776665442 588899999999999963 34677
Q ss_pred HHHHhcCCCCcEEEEcCC
Q psy3240 116 RARLESMKPGAILINTSR 133 (274)
Q Consensus 116 ~~~l~~mk~gailINv~R 133 (274)
.+.+ |+|+++||+|-
T Consensus 216 ~~~v---k~GavVIDvGi 230 (282)
T PRK14166 216 SDMV---KEGVIVVDVGI 230 (282)
T ss_pred HHHc---CCCCEEEEecc
Confidence 7765 89999999983
No 169
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=97.84 E-value=7.8e-05 Score=68.51 Aligned_cols=101 Identities=17% Similarity=0.253 Sum_probs=67.5
Q ss_pred CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCc--------------ccCHHHHhcccCEEEEcCCCC
Q psy3240 43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAE--------------HTNIDDLCKQSDFIIITSALT 107 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~--------------~~sl~ell~~aDvVil~lPlt 107 (274)
++|+|||.|.||..+|..|...|.+++++++ ....+ ..+.|.. ..+.++..+.+|+|++++|.
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~- 78 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKA- 78 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEecc-
Confidence 4799999999999999999988987777766 33222 2222221 12455667889999999995
Q ss_pred cccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhh
Q psy3240 108 PDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIA 147 (274)
Q Consensus 108 ~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~ 147 (274)
.+++.++ ++..+.+++++++|.+.-| +-..+.+.+.+.
T Consensus 79 ~~~~~~~-~~l~~~~~~~~~ii~~~nG-~~~~~~l~~~~~ 116 (305)
T PRK12921 79 YQLDAAI-PDLKPLVGEDTVIIPLQNG-IGQLEQLEPYFG 116 (305)
T ss_pred cCHHHHH-HHHHhhcCCCCEEEEeeCC-CChHHHHHHhCC
Confidence 3455544 3444456778888877554 334556666443
No 170
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.84 E-value=7e-05 Score=70.05 Aligned_cols=78 Identities=18% Similarity=0.354 Sum_probs=64.9
Q ss_pred CCCCCCCEEEEEccC-hHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240 37 GPALQNSTVGIVGCG-RIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN 115 (274)
Q Consensus 37 g~~L~gktVGIIGlG-~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~ 115 (274)
+.++.||++.|||-+ .+|+.+|..|...|+.+.+.+.++. ++.+..++||+|+.++.- .+++.
T Consensus 155 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T~------------~l~~~~~~ADIvVsAvGk----p~~i~ 218 (294)
T PRK14187 155 TRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSATR------------DLADYCSKADILVAAVGI----PNFVK 218 (294)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCCC------------CHHHHHhhCCEEEEccCC----cCccC
Confidence 568999999999975 6899999999999997777765442 578899999999999974 24577
Q ss_pred HHHHhcCCCCcEEEEcCC
Q psy3240 116 RARLESMKPGAILINTSR 133 (274)
Q Consensus 116 ~~~l~~mk~gailINv~R 133 (274)
.+.+ |+|+++||+|-
T Consensus 219 ~~~i---k~gaiVIDVGi 233 (294)
T PRK14187 219 YSWI---KKGAIVIDVGI 233 (294)
T ss_pred HHHc---CCCCEEEEecc
Confidence 7765 89999999984
No 171
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.83 E-value=7.2e-05 Score=69.59 Aligned_cols=79 Identities=16% Similarity=0.253 Sum_probs=64.8
Q ss_pred CCCCCCCEEEEEccC-hHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240 37 GPALQNSTVGIVGCG-RIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN 115 (274)
Q Consensus 37 g~~L~gktVGIIGlG-~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~ 115 (274)
+-++.||++.|||-+ .+|+++|..|...++.+.++.+++. ++.+..++||+|+.+++- .+++.
T Consensus 152 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~T~------------nl~~~~~~ADIvI~AvGk----~~~i~ 215 (282)
T PRK14182 152 RVDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRTA------------DLAGEVGRADILVAAIGK----AELVK 215 (282)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCC------------CHHHHHhhCCEEEEecCC----cCccC
Confidence 568999999999975 6899999999988997777655432 578899999999999973 35677
Q ss_pred HHHHhcCCCCcEEEEcCCC
Q psy3240 116 RARLESMKPGAILINTSRG 134 (274)
Q Consensus 116 ~~~l~~mk~gailINv~RG 134 (274)
.+.+ |+|+++||+|--
T Consensus 216 ~~~i---k~gaiVIDvGin 231 (282)
T PRK14182 216 GAWV---KEGAVVIDVGMN 231 (282)
T ss_pred HHHc---CCCCEEEEeece
Confidence 7765 899999999843
No 172
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=97.83 E-value=6.3e-05 Score=72.05 Aligned_cols=78 Identities=19% Similarity=0.368 Sum_probs=64.9
Q ss_pred CCCCCCCEEEEEccC-hHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240 37 GPALQNSTVGIVGCG-RIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN 115 (274)
Q Consensus 37 g~~L~gktVGIIGlG-~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~ 115 (274)
+.++.||++.|||-+ .+|+.+|..|...++.+.+...++. ++.+..++||+|+.++.- .+++.
T Consensus 226 ~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~T~------------nl~~~~r~ADIVIsAvGk----p~~i~ 289 (364)
T PLN02616 226 NVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK------------NPEEITREADIIISAVGQ----PNMVR 289 (364)
T ss_pred CCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCCCC------------CHHHHHhhCCEEEEcCCC----cCcCC
Confidence 568999999999975 6799999999999997777765442 588899999999999963 34677
Q ss_pred HHHHhcCCCCcEEEEcCC
Q psy3240 116 RARLESMKPGAILINTSR 133 (274)
Q Consensus 116 ~~~l~~mk~gailINv~R 133 (274)
.+.+ |+|+++||+|-
T Consensus 290 ~d~v---K~GAvVIDVGI 304 (364)
T PLN02616 290 GSWI---KPGAVVIDVGI 304 (364)
T ss_pred HHHc---CCCCEEEeccc
Confidence 7765 89999999984
No 173
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.82 E-value=7.8e-05 Score=69.38 Aligned_cols=78 Identities=18% Similarity=0.294 Sum_probs=64.2
Q ss_pred CCCCCCCEEEEEccC-hHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240 37 GPALQNSTVGIVGCG-RIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN 115 (274)
Q Consensus 37 g~~L~gktVGIIGlG-~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~ 115 (274)
+.++.||++.|||-+ .+|+.+|..|...|+.+.+...++. ++.+..++||+|+.+++- .+++.
T Consensus 153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T~------------dl~~~~k~ADIvIsAvGk----p~~i~ 216 (282)
T PRK14180 153 GIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTT------------DLKSHTTKADILIVAVGK----PNFIT 216 (282)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCCC------------CHHHHhhhcCEEEEccCC----cCcCC
Confidence 568999999999975 6899999999999997777765442 577889999999999974 24577
Q ss_pred HHHHhcCCCCcEEEEcCC
Q psy3240 116 RARLESMKPGAILINTSR 133 (274)
Q Consensus 116 ~~~l~~mk~gailINv~R 133 (274)
.+.+ |+|+++||+|-
T Consensus 217 ~~~v---k~gavVIDvGi 231 (282)
T PRK14180 217 ADMV---KEGAVVIDVGI 231 (282)
T ss_pred HHHc---CCCcEEEEecc
Confidence 7664 89999999984
No 174
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=97.82 E-value=0.0001 Score=67.60 Aligned_cols=115 Identities=13% Similarity=0.110 Sum_probs=76.4
Q ss_pred CCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCC--------hh-H------h-hc------------CCccc
Q psy3240 37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKK--------PE-A------D-KR------------GAEHT 88 (274)
Q Consensus 37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~--------~~-a------~-~~------------g~~~~ 88 (274)
+.+|+|+||.|-|+|++|+.+|+.|...|++++.+.+.... .. . + .. +.+..
T Consensus 33 ~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~ 112 (254)
T cd05313 33 NETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYF 112 (254)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEe
Confidence 46899999999999999999999999999988755542110 00 0 0 00 13334
Q ss_pred CHHHHh-cccCEEEEcCCCCcccHHhccHHHHhcCC--CCcEEEEcCCCchhcHHHHHhhhhhhhheee-hhhc
Q psy3240 89 NIDDLC-KQSDFIIITSALTPDTHHLINRARLESMK--PGAILINTSRGQLVDQEALIDFIADIRVISI-SMVT 158 (274)
Q Consensus 89 sl~ell-~~aDvVil~lPlt~~T~~li~~~~l~~mk--~gailINv~RG~iVde~aL~~~L~~~~i~~~-D~~~ 158 (274)
+.++++ ..|||++-|. +.+.|+.+..++++ +=.+++-.+-+.+-. +..+.|+++|+.++ |.+.
T Consensus 113 ~~~~~~~~~~DIliPcA-----l~~~I~~~na~~i~~~~ak~I~EgAN~p~t~--~a~~~L~~rGI~vvPD~la 179 (254)
T cd05313 113 EGKKPWEVPCDIAFPCA-----TQNEVDAEDAKLLVKNGCKYVAEGANMPCTA--EAIEVFRQAGVLFAPGKAA 179 (254)
T ss_pred CCcchhcCCCcEEEecc-----ccccCCHHHHHHHHHcCCEEEEeCCCCCCCH--HHHHHHHHCCcEEECchhh
Confidence 555554 4699988874 55778888877774 344666677777644 34466778777653 3443
No 175
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.80 E-value=8.9e-05 Score=69.04 Aligned_cols=80 Identities=18% Similarity=0.328 Sum_probs=64.8
Q ss_pred CCCCCCCEEEEEcc-ChHHHHHHHHHcc--CCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHh
Q psy3240 37 GPALQNSTVGIVGC-GRIGLSVLEKLIP--YKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHL 113 (274)
Q Consensus 37 g~~L~gktVGIIGl-G~IG~~iA~~L~~--~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~l 113 (274)
+.++.||++.|||- +.+|+.+|..|.. .++.+.+...++ .++.+..++||+|+.++.-. ++
T Consensus 153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~T------------~~l~~~~k~ADIvV~AvGkp----~~ 216 (284)
T PRK14193 153 DVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTGT------------RDLAAHTRRADIIVAAAGVA----HL 216 (284)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCCC------------CCHHHHHHhCCEEEEecCCc----Cc
Confidence 56899999999997 5789999999987 788776665543 26889999999999999742 46
Q ss_pred ccHHHHhcCCCCcEEEEcCCCc
Q psy3240 114 INRARLESMKPGAILINTSRGQ 135 (274)
Q Consensus 114 i~~~~l~~mk~gailINv~RG~ 135 (274)
+..+.+ |+|+++||+|.-.
T Consensus 217 i~~~~i---k~GavVIDvGin~ 235 (284)
T PRK14193 217 VTADMV---KPGAAVLDVGVSR 235 (284)
T ss_pred cCHHHc---CCCCEEEEccccc
Confidence 777765 8999999999543
No 176
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=97.79 E-value=8.1e-05 Score=70.91 Aligned_cols=78 Identities=19% Similarity=0.377 Sum_probs=64.8
Q ss_pred CCCCCCCEEEEEccC-hHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240 37 GPALQNSTVGIVGCG-RIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN 115 (274)
Q Consensus 37 g~~L~gktVGIIGlG-~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~ 115 (274)
+.+++||++.|||-+ .+|+.+|..|...|+.+.+...++. ++.+..++||+|+.++.- .+++.
T Consensus 209 ~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T~------------nl~~~~~~ADIvIsAvGk----p~~v~ 272 (345)
T PLN02897 209 GVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFTK------------DPEQITRKADIVIAAAGI----PNLVR 272 (345)
T ss_pred CCCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCCC------------CHHHHHhhCCEEEEccCC----cCccC
Confidence 568999999999986 5799999999999997777765542 578899999999999863 34677
Q ss_pred HHHHhcCCCCcEEEEcCC
Q psy3240 116 RARLESMKPGAILINTSR 133 (274)
Q Consensus 116 ~~~l~~mk~gailINv~R 133 (274)
.+.+ |+|+++||+|-
T Consensus 273 ~d~v---k~GavVIDVGi 287 (345)
T PLN02897 273 GSWL---KPGAVVIDVGT 287 (345)
T ss_pred HHHc---CCCCEEEEccc
Confidence 7765 89999999984
No 177
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=97.79 E-value=0.00042 Score=67.12 Aligned_cols=105 Identities=22% Similarity=0.286 Sum_probs=73.7
Q ss_pred CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcC---------------------CcccCHHHHhcccCEEE
Q psy3240 43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRG---------------------AEHTNIDDLCKQSDFII 101 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g---------------------~~~~sl~ell~~aDvVi 101 (274)
.+|||||+|-||-++|..+...|.+++++|-+..+-.....| .+..+--+.++.||+++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l~~~dv~i 89 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEELKECDVFI 89 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhcccCCEEE
Confidence 799999999999999999999999999998665432211111 11222223355899999
Q ss_pred EcCCCCcccH-------Hhcc--HHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhh
Q psy3240 102 ITSALTPDTH-------HLIN--RARLESMKPGAILINTSRGQLVDQEALIDFIAD 148 (274)
Q Consensus 102 l~lPlt~~T~-------~li~--~~~l~~mk~gailINv~RG~iVde~aL~~~L~~ 148 (274)
+|+| ||-+. .+.+ +...+.|++|.++|==|+..+=-.+.++..|.+
T Consensus 90 I~VP-TPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle 144 (436)
T COG0677 90 ICVP-TPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLE 144 (436)
T ss_pred EEec-CCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHh
Confidence 9999 44332 2222 245677999999999888777777888775543
No 178
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=97.77 E-value=9.7e-05 Score=70.37 Aligned_cols=98 Identities=12% Similarity=0.083 Sum_probs=65.3
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhccHH
Q psy3240 38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRA 117 (274)
Q Consensus 38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~~ 117 (274)
.++.+++|.|||.|.||+.+|+.|...|.+.+.+.+|+.... ..+-......+...++|+|+.+...|.....++..+
T Consensus 170 ~~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~--~~~~~~~~~~~~~~~~DvVIs~t~~Tas~~p~i~~~ 247 (338)
T PRK00676 170 QKSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTL--PYRTVVREELSFQDPYDVIFFGSSESAYAFPHLSWE 247 (338)
T ss_pred CCccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCcccc--chhhhhhhhhhcccCCCEEEEcCCcCCCCCceeeHH
Confidence 369999999999999999999999999987777777775321 010000112245678999999743343444556666
Q ss_pred HHhcCCCCcEEEEcCCCchhc
Q psy3240 118 RLESMKPGAILINTSRGQLVD 138 (274)
Q Consensus 118 ~l~~mk~gailINv~RG~iVd 138 (274)
.++..++ .++||.+=-.=||
T Consensus 248 ~~~~~~~-r~~iDLAvPRdId 267 (338)
T PRK00676 248 SLADIPD-RIVFDFNVPRTFP 267 (338)
T ss_pred HHhhccC-cEEEEecCCCCCc
Confidence 6655433 4899988443343
No 179
>PRK14982 acyl-ACP reductase; Provisional
Probab=97.77 E-value=0.0001 Score=70.31 Aligned_cols=98 Identities=21% Similarity=0.355 Sum_probs=69.1
Q ss_pred CCCCCCCCEEEEEcc-ChHHHHHHHHHcc-CCCeEEEEeCCCCChh---HhhcC-CcccCHHHHhcccCEEEEcCCCCcc
Q psy3240 36 CGPALQNSTVGIVGC-GRIGLSVLEKLIP-YKVSKFLYTSRSKKPE---ADKRG-AEHTNIDDLCKQSDFIIITSALTPD 109 (274)
Q Consensus 36 ~g~~L~gktVGIIGl-G~IG~~iA~~L~~-~G~~vv~~~~r~~~~~---a~~~g-~~~~sl~ell~~aDvVil~lPlt~~ 109 (274)
.|.++++++|.|+|. |.||+.+|+.|.. .|.+.++..+|..... +.+.+ ....++++.++++|+|+.+.-.
T Consensus 149 lg~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~--- 225 (340)
T PRK14982 149 LGIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASM--- 225 (340)
T ss_pred hccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcC---
Confidence 456899999999998 8999999999964 5654444444543222 22222 2334788999999999886643
Q ss_pred cHH-hccHHHHhcCCCCcEEEEcCCCchhcH
Q psy3240 110 THH-LINRARLESMKPGAILINTSRGQLVDQ 139 (274)
Q Consensus 110 T~~-li~~~~l~~mk~gailINv~RG~iVde 139 (274)
... +++.+.+ +++.++||.|+-.=||.
T Consensus 226 ~~~~~I~~~~l---~~~~~viDiAvPRDVd~ 253 (340)
T PRK14982 226 PKGVEIDPETL---KKPCLMIDGGYPKNLDT 253 (340)
T ss_pred CcCCcCCHHHh---CCCeEEEEecCCCCCCc
Confidence 224 3677644 79999999999776664
No 180
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=97.76 E-value=0.00016 Score=68.08 Aligned_cols=94 Identities=20% Similarity=0.224 Sum_probs=67.9
Q ss_pred CCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh------------HhhcCC-------------ccc-CHHHHhc
Q psy3240 42 NSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE------------ADKRGA-------------EHT-NIDDLCK 95 (274)
Q Consensus 42 gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~------------a~~~g~-------------~~~-sl~ell~ 95 (274)
-++|+|||.|.||+.+|..+...|..++.+|.+..... ..+.|. ... ++. .++
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l~ 81 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-ALK 81 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hhc
Confidence 47999999999999999999887798888887633211 011111 111 222 688
Q ss_pred ccCEEEEcCCCCcccHHhccHHHHhcCCCCcEE-EEcCCCch
Q psy3240 96 QSDFIIITSALTPDTHHLINRARLESMKPGAIL-INTSRGQL 136 (274)
Q Consensus 96 ~aDvVil~lPlt~~T~~li~~~~l~~mk~gail-INv~RG~i 136 (274)
.||+|+=++|-+-+.++-+-++.=+..+|+++| -|+|+-.+
T Consensus 82 ~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~i 123 (307)
T COG1250 82 DADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSI 123 (307)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCH
Confidence 999999999988888876666666778899988 67776443
No 181
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=97.76 E-value=3.7e-05 Score=82.42 Aligned_cols=128 Identities=10% Similarity=0.154 Sum_probs=92.3
Q ss_pred CCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCC--------------------------hhH-hhcC----C--
Q psy3240 39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKK--------------------------PEA-DKRG----A-- 85 (274)
Q Consensus 39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~--------------------------~~a-~~~g----~-- 85 (274)
.+.-.+|.|+|.|+.|+..++.+.++|++ . .++ .+- ... ...+ .
T Consensus 200 gv~P~~vVi~G~G~Vg~gA~~i~~~lg~~-~-v~~-~~l~~l~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~f~~ 276 (1042)
T PLN02819 200 GICPLVFVFTGSGNVSQGAQEIFKLLPHT-F-VEP-SKLPELKGISQNKISTKRVYQVYGCVVTSQDMVEHKDPSKQFDK 276 (1042)
T ss_pred CCCCeEEEEeCCchHHHHHHHHHhhcCCC-c-cCH-HHHHHHHHhhcCCccccccceeeeeecChHHHhhccCCccccch
Confidence 34457899999999999999999988774 2 110 000 000 0000 0
Q ss_pred --------ccc-C-HHHHhcccCEEEEcCCCCcccHHhccHH-HHhcCCCCc----EEEEcCCCchhcHHHHHhhhhhhh
Q psy3240 86 --------EHT-N-IDDLCKQSDFIIITSALTPDTHHLINRA-RLESMKPGA----ILINTSRGQLVDQEALIDFIADIR 150 (274)
Q Consensus 86 --------~~~-s-l~ell~~aDvVil~lPlt~~T~~li~~~-~l~~mk~ga----ilINv~RG~iVde~aL~~~L~~~~ 150 (274)
.+. . +++.++.+|+|+.++-..+.+..++..+ ..+.||+|. +++|++ +|..--++
T Consensus 277 ~~y~~~Pe~y~s~F~~~~~~~advlIn~i~~~~~~P~lvt~~~~~~~mk~G~~~l~vI~DVs----~D~gG~ie------ 346 (1042)
T PLN02819 277 ADYYAHPEHYNPVFHEKIAPYASVIVNCMYWEKRFPRLLTTKQLQDLTRKGGCPLVGVCDIT----CDIGGSIE------ 346 (1042)
T ss_pred hhhccCchhccchhHHHhHhhCCEEEeeeecCCCCCceeCHHHHHHhhcCCCccceEEEEEc----cCCCCCee------
Confidence 000 1 4568889999999998777788899887 778899998 899987 33333344
Q ss_pred heeehhhccccccc-ceeecCCCccc-------------CccceeeeeecccCCc
Q psy3240 151 VISISMVTNEKHLH-RVFTLGDSFHK-------------GHVSAFIFIHMIMGDT 191 (274)
Q Consensus 151 i~~~D~~~~~~~~~-~~~~~~~~~~~-------------~~~~~~~~~~~i~~~~ 191 (274)
++ +.||+++|||. +++..++|+.++|+.-
T Consensus 347 ------------~~~~~Tt~~~P~~~~~~~~~~~~~~~~~~gv~~~~VdNlP~~l 389 (1042)
T PLN02819 347 ------------FLNKTTSIEKPFFRYNPSNNSYHDDMDGDGILCMAVDILPTEF 389 (1042)
T ss_pred ------------ecccCCCCcCCeEeecccccccccccCCCCeEEEEECCccccC
Confidence 45 89999999999 8899999999999973
No 182
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.75 E-value=0.00012 Score=68.21 Aligned_cols=79 Identities=22% Similarity=0.348 Sum_probs=63.7
Q ss_pred CCCCCCCEEEEEccC-hHHHHHHHHHccC----CCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccH
Q psy3240 37 GPALQNSTVGIVGCG-RIGLSVLEKLIPY----KVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTH 111 (274)
Q Consensus 37 g~~L~gktVGIIGlG-~IG~~iA~~L~~~----G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~ 111 (274)
+-++.||++.|||-+ .+|+.+|..|... ++.+.+...++. ++.+.+++||+|+.+++- .
T Consensus 148 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~T~------------~l~~~~~~ADIvV~AvG~----p 211 (287)
T PRK14181 148 EIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQSE------------NLTEILKTADIIIAAIGV----P 211 (287)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCCCC------------CHHHHHhhCCEEEEccCC----c
Confidence 568999999999986 6799999999877 676666554332 588899999999999964 2
Q ss_pred HhccHHHHhcCCCCcEEEEcCCC
Q psy3240 112 HLINRARLESMKPGAILINTSRG 134 (274)
Q Consensus 112 ~li~~~~l~~mk~gailINv~RG 134 (274)
+++..+++ |+|+++||+|--
T Consensus 212 ~~i~~~~i---k~GavVIDvGin 231 (287)
T PRK14181 212 LFIKEEMI---AEKAVIVDVGTS 231 (287)
T ss_pred CccCHHHc---CCCCEEEEeccc
Confidence 56777765 899999999853
No 183
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.75 E-value=0.00017 Score=69.84 Aligned_cols=116 Identities=13% Similarity=0.245 Sum_probs=88.7
Q ss_pred CCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-H-hhc----CCcc-cCHHHH---hcccCEEEEcCCCCcccH
Q psy3240 42 NSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-A-DKR----GAEH-TNIDDL---CKQSDFIIITSALTPDTH 111 (274)
Q Consensus 42 gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a-~~~----g~~~-~sl~el---l~~aDvVil~lPlt~~T~ 111 (274)
...+|+||+|.||+.+|.+....|.++.+|++...+.+ . .+. .+.. .+++|+ ++.---|++++-......
T Consensus 3 ~~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD 82 (473)
T COG0362 3 KADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPVD 82 (473)
T ss_pred ccceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcHH
Confidence 35699999999999999999999997777766555544 2 222 1222 377775 456678888887653334
Q ss_pred HhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhc
Q psy3240 112 HLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVT 158 (274)
Q Consensus 112 ~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~ 158 (274)
.+| ++.++.|.+|=++||-+-..--|...-.+.|++.|+.||.|-.
T Consensus 83 ~~I-~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GV 128 (473)
T COG0362 83 AVI-EQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGV 128 (473)
T ss_pred HHH-HHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccc
Confidence 555 4788999999999999998888999999999999999998544
No 184
>PRK07340 ornithine cyclodeaminase; Validated
Probab=97.75 E-value=9.4e-05 Score=69.24 Aligned_cols=90 Identities=10% Similarity=0.193 Sum_probs=65.5
Q ss_pred CCCCEEEEEccChHHHHHHHHHcc-CCCeEEEEeCCCCChh---Hhhc---CCc--ccCHHHHhcccCEEEEcCCCCccc
Q psy3240 40 LQNSTVGIVGCGRIGLSVLEKLIP-YKVSKFLYTSRSKKPE---ADKR---GAE--HTNIDDLCKQSDFIIITSALTPDT 110 (274)
Q Consensus 40 L~gktVGIIGlG~IG~~iA~~L~~-~G~~vv~~~~r~~~~~---a~~~---g~~--~~sl~ell~~aDvVil~lPlt~~T 110 (274)
...++++|||.|.+|+..++.+.. ++.+.+..++|+.... +... +.. ..+.+++++++|+|+.++|.+.
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~~-- 200 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSRT-- 200 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCCC--
Confidence 457899999999999999999864 6766666666654322 2222 222 2378899999999999999643
Q ss_pred HHhccHHHHhcCCCCcEEEEcCCCch
Q psy3240 111 HHLINRARLESMKPGAILINTSRGQL 136 (274)
Q Consensus 111 ~~li~~~~l~~mk~gailINv~RG~i 136 (274)
.++.. .+|||+.++.+|.-.+
T Consensus 201 -Pl~~~----~~~~g~hi~~iGs~~p 221 (304)
T PRK07340 201 -PVYPE----AARAGRLVVAVGAFTP 221 (304)
T ss_pred -ceeCc----cCCCCCEEEecCCCCC
Confidence 56653 3699999999996544
No 185
>PRK14031 glutamate dehydrogenase; Provisional
Probab=97.74 E-value=0.00017 Score=71.08 Aligned_cols=110 Identities=16% Similarity=0.242 Sum_probs=72.3
Q ss_pred CCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCC--------hh-------------------HhhcCCcccC
Q psy3240 37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKK--------PE-------------------ADKRGAEHTN 89 (274)
Q Consensus 37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~--------~~-------------------a~~~g~~~~s 89 (274)
|.+|+|++|.|.|+|++|+..|+.|..+|++++++.+.... .. ....++...+
T Consensus 223 g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i~ 302 (444)
T PRK14031 223 GTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYVE 302 (444)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEcC
Confidence 57899999999999999999999999999988876552211 00 0011333334
Q ss_pred HHHHh-cccCEEEEcCCCCcccHHhccHHHHhcCCC-CcEEE-EcCCCchhcHHHHHhhhhhhhhee
Q psy3240 90 IDDLC-KQSDFIIITSALTPDTHHLINRARLESMKP-GAILI-NTSRGQLVDQEALIDFIADIRVIS 153 (274)
Q Consensus 90 l~ell-~~aDvVil~lPlt~~T~~li~~~~l~~mk~-gailI-Nv~RG~iVde~aL~~~L~~~~i~~ 153 (274)
.++++ ..|||++-|. +.+.|+.+..++++. |..+| -.+-+ ++..++. +.|.++||.+
T Consensus 303 ~d~~~~~~cDIliPaA-----l~n~I~~~na~~l~a~g~~~V~EgAN~-P~t~eA~-~~L~~rgI~~ 362 (444)
T PRK14031 303 GARPWGEKGDIALPSA-----TQNELNGDDARQLVANGVIAVSEGANM-PSTPEAI-KVFQDAKILY 362 (444)
T ss_pred CcccccCCCcEEeecc-----cccccCHHHHHHHHhcCCeEEECCCCC-CCCHHHH-HHHHHCCcEE
Confidence 45543 3588887654 457788888888864 45444 44555 6666654 4466666543
No 186
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=97.71 E-value=0.00035 Score=65.97 Aligned_cols=88 Identities=20% Similarity=0.251 Sum_probs=64.1
Q ss_pred CCCEEEEEccChHHHHHHHHHc-cCCCeEEEEeCCCCCh-h--Hhh----cCCcc---cCHHHHhcccCEEEEcCCCCcc
Q psy3240 41 QNSTVGIVGCGRIGLSVLEKLI-PYKVSKFLYTSRSKKP-E--ADK----RGAEH---TNIDDLCKQSDFIIITSALTPD 109 (274)
Q Consensus 41 ~gktVGIIGlG~IG~~iA~~L~-~~G~~vv~~~~r~~~~-~--a~~----~g~~~---~sl~ell~~aDvVil~lPlt~~ 109 (274)
..++++|||.|.+|+..++.+. ..+.+.+.+++|+... + +.. .++.. .++++++++||+|+.++|...
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~~- 206 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSET- 206 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCCC-
Confidence 4579999999999999999997 4776666556665433 2 221 24432 378899999999999998643
Q ss_pred cHHhccHHHHhcCCCCcEEEEcCCC
Q psy3240 110 THHLINRARLESMKPGAILINTSRG 134 (274)
Q Consensus 110 T~~li~~~~l~~mk~gailINv~RG 134 (274)
.++..+. +|+|+.+..++.-
T Consensus 207 --p~i~~~~---l~~g~~i~~vg~~ 226 (326)
T TIGR02992 207 --PILHAEW---LEPGQHVTAMGSD 226 (326)
T ss_pred --cEecHHH---cCCCcEEEeeCCC
Confidence 5666554 5899998888753
No 187
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.70 E-value=0.00014 Score=68.10 Aligned_cols=81 Identities=22% Similarity=0.454 Sum_probs=63.9
Q ss_pred CCCCCCCCEEEEEcc-ChHHHHHHHHHccC----CCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCccc
Q psy3240 36 CGPALQNSTVGIVGC-GRIGLSVLEKLIPY----KVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDT 110 (274)
Q Consensus 36 ~g~~L~gktVGIIGl-G~IG~~iA~~L~~~----G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T 110 (274)
.|.++.||++.|||- ..+|+.+|..|... ++.+.+...++. ++.+..++||+|+.++.-
T Consensus 155 ~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~T~------------~l~~~~~~ADIvVsAvGk---- 218 (297)
T PRK14168 155 SGVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTRSK------------NLARHCQRADILIVAAGV---- 218 (297)
T ss_pred hCCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCCCc------------CHHHHHhhCCEEEEecCC----
Confidence 367899999999997 57899999999876 676666554432 588899999999998853
Q ss_pred HHhccHHHHhcCCCCcEEEEcCCCc
Q psy3240 111 HHLINRARLESMKPGAILINTSRGQ 135 (274)
Q Consensus 111 ~~li~~~~l~~mk~gailINv~RG~ 135 (274)
.+++..+.+ |+|+++||+|.-.
T Consensus 219 p~~i~~~~i---k~gavVIDvGin~ 240 (297)
T PRK14168 219 PNLVKPEWI---KPGATVIDVGVNR 240 (297)
T ss_pred cCccCHHHc---CCCCEEEecCCCc
Confidence 246777665 8999999998533
No 188
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=97.70 E-value=0.00014 Score=68.74 Aligned_cols=89 Identities=18% Similarity=0.278 Sum_probs=62.2
Q ss_pred CCEEEEEccChHHHHHHHHHcc-CCCeEEEEeCCCCCh-h--Hh---hcCCc---ccCHHHHhcccCEEEEcCCCCcccH
Q psy3240 42 NSTVGIVGCGRIGLSVLEKLIP-YKVSKFLYTSRSKKP-E--AD---KRGAE---HTNIDDLCKQSDFIIITSALTPDTH 111 (274)
Q Consensus 42 gktVGIIGlG~IG~~iA~~L~~-~G~~vv~~~~r~~~~-~--a~---~~g~~---~~sl~ell~~aDvVil~lPlt~~T~ 111 (274)
-+++||||.|.+|+..++.+.. +..+.+.+++++... . +. +.+.. ..+.+|++++||+|++|+|.+ .
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~---~ 204 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSR---K 204 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCC---C
Confidence 5789999999999998777653 344445444554432 2 11 23532 238999999999999999853 4
Q ss_pred HhccHHHHhcCCCCcEEEEcCCCch
Q psy3240 112 HLINRARLESMKPGAILINTSRGQL 136 (274)
Q Consensus 112 ~li~~~~l~~mk~gailINv~RG~i 136 (274)
.++..+. +|||+.+..+|.-.+
T Consensus 205 P~~~~~~---l~~g~~v~~vGs~~p 226 (325)
T TIGR02371 205 PVVKADW---VSEGTHINAIGADAP 226 (325)
T ss_pred cEecHHH---cCCCCEEEecCCCCc
Confidence 5666554 499999999996543
No 189
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.70 E-value=0.00016 Score=67.59 Aligned_cols=78 Identities=19% Similarity=0.329 Sum_probs=63.0
Q ss_pred CCCCCCCEEEEEccC-hHHHHHHHHHccC----CCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccH
Q psy3240 37 GPALQNSTVGIVGCG-RIGLSVLEKLIPY----KVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTH 111 (274)
Q Consensus 37 g~~L~gktVGIIGlG-~IG~~iA~~L~~~----G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~ 111 (274)
+.++.||++.|||-+ .+|+.+|..|... ++.+.+...++. ++.+..++||+|+.+++- .
T Consensus 152 ~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T~------------nl~~~~~~ADIvIsAvGk----p 215 (293)
T PRK14185 152 HIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRSK------------NLKKECLEADIIIAALGQ----P 215 (293)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCCC------------CHHHHHhhCCEEEEccCC----c
Confidence 568999999999985 6799999999865 676666655442 588899999999999974 2
Q ss_pred HhccHHHHhcCCCCcEEEEcCC
Q psy3240 112 HLINRARLESMKPGAILINTSR 133 (274)
Q Consensus 112 ~li~~~~l~~mk~gailINv~R 133 (274)
+++..+++ |+|+++||+|-
T Consensus 216 ~~i~~~~v---k~gavVIDvGi 234 (293)
T PRK14185 216 EFVKADMV---KEGAVVIDVGT 234 (293)
T ss_pred CccCHHHc---CCCCEEEEecC
Confidence 45776654 89999999985
No 190
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.70 E-value=0.00016 Score=67.70 Aligned_cols=78 Identities=21% Similarity=0.364 Sum_probs=62.3
Q ss_pred CCCCCCCEEEEEccC-hHHHHHHHHHccC----CCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccH
Q psy3240 37 GPALQNSTVGIVGCG-RIGLSVLEKLIPY----KVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTH 111 (274)
Q Consensus 37 g~~L~gktVGIIGlG-~IG~~iA~~L~~~----G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~ 111 (274)
+.++.||++.|||-+ .+|+.+|..|... ++.+.+..+++. ++.+..++||+|+.++.- .
T Consensus 152 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T~------------~l~~~~~~ADIvIsAvGk----p 215 (297)
T PRK14167 152 GVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRTD------------DLAAKTRRADIVVAAAGV----P 215 (297)
T ss_pred CCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCCCC------------CHHHHHhhCCEEEEccCC----c
Confidence 568999999999985 6799999999765 786666554432 578899999999998853 3
Q ss_pred HhccHHHHhcCCCCcEEEEcCC
Q psy3240 112 HLINRARLESMKPGAILINTSR 133 (274)
Q Consensus 112 ~li~~~~l~~mk~gailINv~R 133 (274)
+++..+++ |+|+++||+|-
T Consensus 216 ~~i~~~~i---k~gaiVIDvGi 234 (297)
T PRK14167 216 ELIDGSML---SEGATVIDVGI 234 (297)
T ss_pred CccCHHHc---CCCCEEEEccc
Confidence 46777665 89999999984
No 191
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=97.69 E-value=0.00014 Score=75.65 Aligned_cols=98 Identities=15% Similarity=0.196 Sum_probs=70.5
Q ss_pred CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-H-----------hhcC-------------Cccc-CHHHHhcc
Q psy3240 43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-A-----------DKRG-------------AEHT-NIDDLCKQ 96 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a-----------~~~g-------------~~~~-sl~ell~~ 96 (274)
++|+|||.|.||..+|..+...|++|++++......+ . .+.| +... ++ +.++.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 392 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-AGFDN 392 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence 6899999999999999999999998888886544211 0 0111 1111 44 45789
Q ss_pred cCEEEEcCCCCcccHHhccHHHHhcCCCCcEEE-EcCCCchhcHHHHHh
Q psy3240 97 SDFIIITSALTPDTHHLINRARLESMKPGAILI-NTSRGQLVDQEALID 144 (274)
Q Consensus 97 aDvVil~lPlt~~T~~li~~~~l~~mk~gailI-Nv~RG~iVde~aL~~ 144 (274)
||+|+=++|-.-+.+.-+-++.-+.++|+++|- |+|. ++..+|.+
T Consensus 393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~---l~i~~ia~ 438 (714)
T TIGR02437 393 VDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTST---ISISLLAK 438 (714)
T ss_pred CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCC---CCHHHHHh
Confidence 999999999988888777677777889998884 4554 34444444
No 192
>PRK09414 glutamate dehydrogenase; Provisional
Probab=97.69 E-value=0.00018 Score=70.85 Aligned_cols=111 Identities=14% Similarity=0.157 Sum_probs=72.3
Q ss_pred CCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCC--------Chh----Hh------------hcCCcccCHHH
Q psy3240 37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSK--------KPE----AD------------KRGAEHTNIDD 92 (274)
Q Consensus 37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~--------~~~----a~------------~~g~~~~sl~e 92 (274)
+.+|+|++|+|.|+|++|+.+|+.|..+|+++++..+... ... .. ..+++..+.++
T Consensus 227 ~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~~~ 306 (445)
T PRK09414 227 GDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLEGGS 306 (445)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecCCcc
Confidence 5689999999999999999999999999998877744211 000 00 00222334455
Q ss_pred Hhc-ccCEEEEcCCCCcccHHhccHHHHhcCC--CCcEEEEcCCCchhcHHHHHhhhhhhhheee
Q psy3240 93 LCK-QSDFIIITSALTPDTHHLINRARLESMK--PGAILINTSRGQLVDQEALIDFIADIRVISI 154 (274)
Q Consensus 93 ll~-~aDvVil~lPlt~~T~~li~~~~l~~mk--~gailINv~RG~iVde~aL~~~L~~~~i~~~ 154 (274)
++. .|||++-|... +.|+.+...+++ +-.+++-.+-+.+ ..+ ..+.|.++||.++
T Consensus 307 i~~~d~DVliPaAl~-----n~It~~~a~~i~~~~akiIvEgAN~p~-t~~-A~~~L~~rGI~~v 364 (445)
T PRK09414 307 PWSVPCDIALPCATQ-----NELDEEDAKTLIANGVKAVAEGANMPS-TPE-AIEVFLEAGVLFA 364 (445)
T ss_pred ccccCCcEEEecCCc-----CcCCHHHHHHHHHcCCeEEEcCCCCCC-CHH-HHHHHHHCCcEEE
Confidence 544 69999988754 456666555553 2346666777776 333 4466777777543
No 193
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.69 E-value=0.00015 Score=67.56 Aligned_cols=77 Identities=18% Similarity=0.405 Sum_probs=63.6
Q ss_pred CCCCCCCEEEEEccC-hHHHHHHHHHcc----CCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccH
Q psy3240 37 GPALQNSTVGIVGCG-RIGLSVLEKLIP----YKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTH 111 (274)
Q Consensus 37 g~~L~gktVGIIGlG-~IG~~iA~~L~~----~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~ 111 (274)
+.++.||++.|||-+ .+|+.+|..|.. .++.+.....++ .++.+.+++||+|+.+++ ..
T Consensus 152 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t------------~~l~~~~~~ADIVI~AvG----~p 215 (286)
T PRK14184 152 GLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRT------------PDLAEECREADFLFVAIG----RP 215 (286)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCc------------hhHHHHHHhCCEEEEecC----CC
Confidence 568999999999985 679999999987 788776666443 258899999999999995 34
Q ss_pred HhccHHHHhcCCCCcEEEEcC
Q psy3240 112 HLINRARLESMKPGAILINTS 132 (274)
Q Consensus 112 ~li~~~~l~~mk~gailINv~ 132 (274)
+++.++.+ |+|+++||+|
T Consensus 216 ~li~~~~v---k~GavVIDVG 233 (286)
T PRK14184 216 RFVTADMV---KPGAVVVDVG 233 (286)
T ss_pred CcCCHHHc---CCCCEEEEee
Confidence 56887776 9999999998
No 194
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=97.68 E-value=0.00014 Score=75.31 Aligned_cols=90 Identities=20% Similarity=0.165 Sum_probs=66.0
Q ss_pred CEEEEEccChHHHHHHHHHc-cCCCeEEEEeCCCCChh-H-----------hhcC-------------Cccc-CHHHHhc
Q psy3240 43 STVGIVGCGRIGLSVLEKLI-PYKVSKFLYTSRSKKPE-A-----------DKRG-------------AEHT-NIDDLCK 95 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~~L~-~~G~~vv~~~~r~~~~~-a-----------~~~g-------------~~~~-sl~ell~ 95 (274)
++|+|||.|.||..+|..+. ..|++|++||....... . .+.+ +... ++ +.++
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 383 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDY-RGFK 383 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCCh-HHhc
Confidence 68999999999999999887 58998888887643211 0 0011 1122 44 4678
Q ss_pred ccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEE-EcCC
Q psy3240 96 QSDFIIITSALTPDTHHLINRARLESMKPGAILI-NTSR 133 (274)
Q Consensus 96 ~aDvVil~lPlt~~T~~li~~~~l~~mk~gailI-Nv~R 133 (274)
.||+|+=++|-..+.+.-+-++.-+.++++++|. |+|.
T Consensus 384 ~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~ 422 (699)
T TIGR02440 384 DVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSS 422 (699)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCC
Confidence 9999999999988888877677777789988874 4444
No 195
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.66 E-value=0.00016 Score=75.19 Aligned_cols=98 Identities=16% Similarity=0.222 Sum_probs=71.2
Q ss_pred CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-H-----------hhcC-------------Cccc-CHHHHhcc
Q psy3240 43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-A-----------DKRG-------------AEHT-NIDDLCKQ 96 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a-----------~~~g-------------~~~~-sl~ell~~ 96 (274)
++|+|||.|.||..+|..+...|++|++||.+....+ . .+.| +... ++ +.++.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 392 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDY-AGFER 392 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence 6899999999999999999999998888887654321 0 0111 1112 45 45789
Q ss_pred cCEEEEcCCCCcccHHhccHHHHhcCCCCcEEE-EcCCCchhcHHHHHh
Q psy3240 97 SDFIIITSALTPDTHHLINRARLESMKPGAILI-NTSRGQLVDQEALID 144 (274)
Q Consensus 97 aDvVil~lPlt~~T~~li~~~~l~~mk~gailI-Nv~RG~iVde~aL~~ 144 (274)
||+|+=++|-..+.+.-+-++.-+.++++++|. |+|. +....|.+
T Consensus 393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSs---l~i~~la~ 438 (715)
T PRK11730 393 VDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTST---ISISLLAK 438 (715)
T ss_pred CCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCC---CCHHHHHh
Confidence 999999999988888877777778889998884 4444 33444445
No 196
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.66 E-value=0.00021 Score=66.94 Aligned_cols=78 Identities=18% Similarity=0.321 Sum_probs=62.7
Q ss_pred CCCCCCCEEEEEccC-hHHHHHHHHHcc----CCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccH
Q psy3240 37 GPALQNSTVGIVGCG-RIGLSVLEKLIP----YKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTH 111 (274)
Q Consensus 37 g~~L~gktVGIIGlG-~IG~~iA~~L~~----~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~ 111 (274)
+.++.||++.|||-+ .+|+.+|..|.. .++.+......+ .++.+.+++||+|+.+++..
T Consensus 154 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t------------~~l~~~~~~ADIvI~Avg~~---- 217 (295)
T PRK14174 154 NIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT------------KDIPSYTRQADILIAAIGKA---- 217 (295)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc------------hhHHHHHHhCCEEEEecCcc----
Confidence 568999999999985 679999999876 577655554332 25888999999999999532
Q ss_pred HhccHHHHhcCCCCcEEEEcCC
Q psy3240 112 HLINRARLESMKPGAILINTSR 133 (274)
Q Consensus 112 ~li~~~~l~~mk~gailINv~R 133 (274)
+++..+.+ |+|+++||+|-
T Consensus 218 ~li~~~~v---k~GavVIDVgi 236 (295)
T PRK14174 218 RFITADMV---KPGAVVIDVGI 236 (295)
T ss_pred CccCHHHc---CCCCEEEEeec
Confidence 67888877 99999999984
No 197
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.65 E-value=0.00024 Score=65.91 Aligned_cols=113 Identities=15% Similarity=0.190 Sum_probs=76.8
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCCh-h--HhhcC-----Ccc---cCHHHHhcccCEEEEcCCC
Q psy3240 38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKP-E--ADKRG-----AEH---TNIDDLCKQSDFIIITSAL 106 (274)
Q Consensus 38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~-~--a~~~g-----~~~---~sl~ell~~aDvVil~lPl 106 (274)
.++.+++|.|||.|.+|++++..|...|++.+...+|.... + +...+ ... .++.+.++++|+|+.++|.
T Consensus 123 ~~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~ 202 (284)
T PRK12549 123 PDASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPT 202 (284)
T ss_pred cCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcC
Confidence 46788999999999999999999999998555555555432 2 22211 111 1445677889999999987
Q ss_pred Ccc-c-HHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeeh
Q psy3240 107 TPD-T-HHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISIS 155 (274)
Q Consensus 107 t~~-T-~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D 155 (274)
.-. . ...++. +.++++.+++|+.-... +..|++.-+++|+..+|
T Consensus 203 Gm~~~~~~~~~~---~~l~~~~~v~DivY~P~--~T~ll~~A~~~G~~~~~ 248 (284)
T PRK12549 203 GMAKHPGLPLPA---ELLRPGLWVADIVYFPL--ETELLRAARALGCRTLD 248 (284)
T ss_pred CCCCCCCCCCCH---HHcCCCcEEEEeeeCCC--CCHHHHHHHHCCCeEec
Confidence 421 1 112333 34678899999976552 35677777888887766
No 198
>PRK06046 alanine dehydrogenase; Validated
Probab=97.63 E-value=0.00041 Score=65.48 Aligned_cols=88 Identities=18% Similarity=0.375 Sum_probs=63.2
Q ss_pred CCEEEEEccChHHHHHHHHHc-cCCCeEEEEeCCCCChh---Hhh----cCC--c-ccCHHHHhcccCEEEEcCCCCccc
Q psy3240 42 NSTVGIVGCGRIGLSVLEKLI-PYKVSKFLYTSRSKKPE---ADK----RGA--E-HTNIDDLCKQSDFIIITSALTPDT 110 (274)
Q Consensus 42 gktVGIIGlG~IG~~iA~~L~-~~G~~vv~~~~r~~~~~---a~~----~g~--~-~~sl~ell~~aDvVil~lPlt~~T 110 (274)
-++|||||+|.+|+..++.+. ..+.+.+.++++..... ... .+. . ..+++++++ +|+|++++|.+
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~--- 204 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSR--- 204 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCC---
Confidence 478999999999999999886 35676666666654322 221 233 2 237889887 99999999964
Q ss_pred HHhccHHHHhcCCCCcEEEEcCCCch
Q psy3240 111 HHLINRARLESMKPGAILINTSRGQL 136 (274)
Q Consensus 111 ~~li~~~~l~~mk~gailINv~RG~i 136 (274)
..++..+. +|+|+.+..+|.-.+
T Consensus 205 ~P~~~~~~---l~~g~hV~~iGs~~p 227 (326)
T PRK06046 205 KPVVKAEW---IKEGTHINAIGADAP 227 (326)
T ss_pred CcEecHHH---cCCCCEEEecCCCCC
Confidence 36677665 489999999986443
No 199
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=97.62 E-value=0.00014 Score=75.73 Aligned_cols=98 Identities=16% Similarity=0.214 Sum_probs=71.3
Q ss_pred CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-H-----------hhcC-------------Ccc-cCHHHHhcc
Q psy3240 43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-A-----------DKRG-------------AEH-TNIDDLCKQ 96 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a-----------~~~g-------------~~~-~sl~ell~~ 96 (274)
++|+|||.|.||..+|..+...|++|++++....... . .+.| +.. .++ +.+++
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 414 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDY-SGFKN 414 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCH-HHhcc
Confidence 6899999999999999999989998888876543211 0 0111 111 244 35789
Q ss_pred cCEEEEcCCCCcccHHhccHHHHhcCCCCcEEE-EcCCCchhcHHHHHh
Q psy3240 97 SDFIIITSALTPDTHHLINRARLESMKPGAILI-NTSRGQLVDQEALID 144 (274)
Q Consensus 97 aDvVil~lPlt~~T~~li~~~~l~~mk~gailI-Nv~RG~iVde~aL~~ 144 (274)
||+|+=++|-..+.+.-+-.+.=+.++++++|. |+|+ ++...|.+
T Consensus 415 aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSs---l~i~~la~ 460 (737)
T TIGR02441 415 ADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSA---LPIKDIAA 460 (737)
T ss_pred CCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCC---CCHHHHHh
Confidence 999999999988888877777778889998874 5665 44445555
No 200
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=97.61 E-value=0.00013 Score=57.57 Aligned_cols=86 Identities=14% Similarity=0.171 Sum_probs=57.1
Q ss_pred CCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcc--cCHHHHhcccCEEEEcCCCCcccHHhccH
Q psy3240 39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEH--TNIDDLCKQSDFIIITSALTPDTHHLINR 116 (274)
Q Consensus 39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~--~sl~ell~~aDvVil~lPlt~~T~~li~~ 116 (274)
+|+|++|.|||.|.+|..-++.|...|+++.++.+.. .. .+..++. ..+++.+..+|+|+.+.+... +++
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~--~~-~~~~i~~~~~~~~~~l~~~~lV~~at~d~~-----~n~ 75 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI--EF-SEGLIQLIRREFEEDLDGADLVFAATDDPE-----LNE 75 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE--HH-HHTSCEEEESS-GGGCTTESEEEE-SS-HH-----HHH
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch--hh-hhhHHHHHhhhHHHHHhhheEEEecCCCHH-----HHH
Confidence 6899999999999999999999999999888887765 11 1122222 255667888999998776422 344
Q ss_pred HHHhcCCCCcEEEEcC
Q psy3240 117 ARLESMKPGAILINTS 132 (274)
Q Consensus 117 ~~l~~mk~gailINv~ 132 (274)
......+.-.+++|++
T Consensus 76 ~i~~~a~~~~i~vn~~ 91 (103)
T PF13241_consen 76 AIYADARARGILVNVV 91 (103)
T ss_dssp HHHHHHHHTTSEEEET
T ss_pred HHHHHHhhCCEEEEEC
Confidence 4444455456788875
No 201
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=97.61 E-value=0.0024 Score=59.55 Aligned_cols=100 Identities=17% Similarity=0.186 Sum_probs=64.9
Q ss_pred CCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCc--------------ccCHHHHhcccCEEEEcCCCC
Q psy3240 42 NSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAE--------------HTNIDDLCKQSDFIIITSALT 107 (274)
Q Consensus 42 gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~--------------~~sl~ell~~aDvVil~lPlt 107 (274)
.++|+|||.|.||..+|.+|...|.++.++.+.. .......|.. ..+..+.+..+|+|+++++..
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~~ 83 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD-YEAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVGLKTT 83 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC-HHHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEEEecCC
Confidence 3689999999999999999999999777776543 2222222211 112223467899999999954
Q ss_pred cccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhh
Q psy3240 108 PDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDF 145 (274)
Q Consensus 108 ~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~ 145 (274)
++...+ ....+.++++++++...-| +-.++.+.+.
T Consensus 84 -~~~~~~-~~l~~~~~~~~~iv~lqNG-~~~~e~l~~~ 118 (313)
T PRK06249 84 -ANALLA-PLIPQVAAPDAKVLLLQNG-LGVEEQLREI 118 (313)
T ss_pred -ChHhHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHH
Confidence 344443 2334446778888877554 3355566653
No 202
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=97.57 E-value=0.00081 Score=54.87 Aligned_cols=32 Identities=31% Similarity=0.323 Sum_probs=30.2
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHcCCCCCCccc
Q psy3240 242 SAQIETRQEMARITAQNIINTFHNKPMIYEVP 273 (274)
Q Consensus 242 ~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~ 273 (274)
++|.+++.++...+++||.+|++|+++.|.||
T Consensus 102 ~~T~e~~~~~~~~~~~ni~~~l~g~~~~n~VN 133 (133)
T PF00389_consen 102 GYTDEARERMAEIAAENIERFLNGEPPENVVN 133 (133)
T ss_dssp TGBHHHHHHHHHHHHHHHHHHHTTST-TTBSS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence 89999999999999999999999999999997
No 203
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.57 E-value=0.0002 Score=67.92 Aligned_cols=90 Identities=10% Similarity=0.228 Sum_probs=62.5
Q ss_pred CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-Hhhc---------CC------cc-cCHHHHhcccCEEEEcCC
Q psy3240 43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKR---------GA------EH-TNIDDLCKQSDFIIITSA 105 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~---------g~------~~-~sl~ell~~aDvVil~lP 105 (274)
++|+|||.|.+|..+|..|...| .++.|.++..... ..+. +. .. .++++.++.+|+|++++|
T Consensus 8 mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVilavp 86 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGVP 86 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEEeC
Confidence 67999999999999999999888 4777764332211 1110 11 12 267788999999999999
Q ss_pred CCcccHHhccHHHHhcCCCCcEEEEcCCCc
Q psy3240 106 LTPDTHHLINRARLESMKPGAILINTSRGQ 135 (274)
Q Consensus 106 lt~~T~~li~~~~l~~mk~gailINv~RG~ 135 (274)
. ..++.++. +..+.+++++.+|++.-|=
T Consensus 87 s-~~~~~vl~-~i~~~l~~~~~vIsl~kGi 114 (341)
T PRK12439 87 S-HGFRGVLT-ELAKELRPWVPVVSLVKGL 114 (341)
T ss_pred H-HHHHHHHH-HHHhhcCCCCEEEEEEeCC
Confidence 4 44555553 3445578888888887753
No 204
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.56 E-value=0.00033 Score=72.73 Aligned_cols=99 Identities=14% Similarity=0.126 Sum_probs=70.5
Q ss_pred CEEEEEccChHHHHHHHHHc-cCCCeEEEEeCCCCChh-H-----------hhcC-------------Cccc-CHHHHhc
Q psy3240 43 STVGIVGCGRIGLSVLEKLI-PYKVSKFLYTSRSKKPE-A-----------DKRG-------------AEHT-NIDDLCK 95 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~~L~-~~G~~vv~~~~r~~~~~-a-----------~~~g-------------~~~~-sl~ell~ 95 (274)
++|+|||.|.||..+|..+. ..|+.|+.++.+..... . .+.+ +... ++ +.++
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 388 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFK 388 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhc
Confidence 68999999999999999988 78998888887543211 1 0011 1111 34 4678
Q ss_pred ccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHh
Q psy3240 96 QSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALID 144 (274)
Q Consensus 96 ~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~ 144 (274)
.||+|+=++|-..+.+.-+-++.=+.++|+++|...+++ +....|.+
T Consensus 389 ~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~--l~i~~la~ 435 (708)
T PRK11154 389 HADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSS--LPIGQIAA 435 (708)
T ss_pred cCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHH
Confidence 999999999998888887777777788999998644333 34444444
No 205
>PRK08618 ornithine cyclodeaminase; Validated
Probab=97.53 E-value=0.00038 Score=65.59 Aligned_cols=88 Identities=18% Similarity=0.262 Sum_probs=64.4
Q ss_pred CCCEEEEEccChHHHHHHHHHc-cCCCeEEEEeCCCCChh---Hh----hcCCc---ccCHHHHhcccCEEEEcCCCCcc
Q psy3240 41 QNSTVGIVGCGRIGLSVLEKLI-PYKVSKFLYTSRSKKPE---AD----KRGAE---HTNIDDLCKQSDFIIITSALTPD 109 (274)
Q Consensus 41 ~gktVGIIGlG~IG~~iA~~L~-~~G~~vv~~~~r~~~~~---a~----~~g~~---~~sl~ell~~aDvVil~lPlt~~ 109 (274)
..++++|||.|.+|+..++.+. ..+++.+..++|..... +. ..++. ..+++++++++|+|++++|..
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~-- 203 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAK-- 203 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCC--
Confidence 4689999999999999988764 56777776666665432 11 22443 237899999999999999965
Q ss_pred cHHhccHHHHhcCCCCcEEEEcCCCc
Q psy3240 110 THHLINRARLESMKPGAILINTSRGQ 135 (274)
Q Consensus 110 T~~li~~~~l~~mk~gailINv~RG~ 135 (274)
..++. +.+|+|+.++.+|.-.
T Consensus 204 -~p~i~----~~l~~G~hV~~iGs~~ 224 (325)
T PRK08618 204 -TPVFS----EKLKKGVHINAVGSFM 224 (325)
T ss_pred -CcchH----HhcCCCcEEEecCCCC
Confidence 24554 4469999999998743
No 206
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=97.51 E-value=0.0012 Score=52.20 Aligned_cols=104 Identities=25% Similarity=0.384 Sum_probs=66.8
Q ss_pred EEEEEccChHHHHHHHHHccC--CCeEEEEeCCCCChh---HhhcCCcc-cCHHHHhc--ccCEEEEcCCCCcccHHhcc
Q psy3240 44 TVGIVGCGRIGLSVLEKLIPY--KVSKFLYTSRSKKPE---ADKRGAEH-TNIDDLCK--QSDFIIITSALTPDTHHLIN 115 (274)
Q Consensus 44 tVGIIGlG~IG~~iA~~L~~~--G~~vv~~~~r~~~~~---a~~~g~~~-~sl~ell~--~aDvVil~lPlt~~T~~li~ 115 (274)
+|||||+|.+|+...+.++.. +.+++...++..... +...++.. .+++++++ +.|+|++++|...... +-
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~--~~ 79 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSHAE--IA 79 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGHHH--HH
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcchHH--HH
Confidence 799999999999999888765 455555555544322 34566654 48999998 7999999999643322 22
Q ss_pred HHHHhcCCCCcEEEEcC-CCchhcHHHHHhhhhhhhh
Q psy3240 116 RARLESMKPGAILINTS-RGQLVDQEALIDFIADIRV 151 (274)
Q Consensus 116 ~~~l~~mk~gailINv~-RG~iVde~aL~~~L~~~~i 151 (274)
...++.=+ .+++.-- --.+-+.+.|.+..++.|.
T Consensus 80 ~~~l~~g~--~v~~EKP~~~~~~~~~~l~~~a~~~~~ 114 (120)
T PF01408_consen 80 KKALEAGK--HVLVEKPLALTLEEAEELVEAAKEKGV 114 (120)
T ss_dssp HHHHHTTS--EEEEESSSSSSHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCC--EEEEEcCCcCCHHHHHHHHHHHHHhCC
Confidence 34443322 5666631 2244566677776666554
No 207
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.48 E-value=0.00042 Score=61.20 Aligned_cols=94 Identities=23% Similarity=0.321 Sum_probs=65.9
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHccCCCe-EEEEeCCCCC----------------hh--H-h----hcC--Cc--c--
Q psy3240 38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVS-KFLYTSRSKK----------------PE--A-D----KRG--AE--H-- 87 (274)
Q Consensus 38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~-vv~~~~r~~~----------------~~--a-~----~~g--~~--~-- 87 (274)
..|+.++|+|+|+|.+|..+|+.|...|.. .+++|...-. .. + . +.. +. .
T Consensus 17 ~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~ 96 (200)
T TIGR02354 17 QKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYD 96 (200)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEee
Confidence 468999999999999999999999988984 5566544100 00 0 0 000 11 0
Q ss_pred -----cCHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcC
Q psy3240 88 -----TNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTS 132 (274)
Q Consensus 88 -----~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~ 132 (274)
.+++++++.+|+|+-+ ..+.+++.++.......+++..++...+
T Consensus 97 ~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~~~g 145 (200)
T TIGR02354 97 EKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIAASG 145 (200)
T ss_pred eeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEEEec
Confidence 1345678889999999 5678899998888888888777676443
No 208
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=97.47 E-value=0.00044 Score=65.61 Aligned_cols=109 Identities=17% Similarity=0.146 Sum_probs=67.0
Q ss_pred CCEEEEEccChHHHHHHHHHccC-CCeEEEEeCCCCChh-HhhcCCcc-cCHHHHhcccCEEEEcCCCCcccHHhccHHH
Q psy3240 42 NSTVGIVGCGRIGLSVLEKLIPY-KVSKFLYTSRSKKPE-ADKRGAEH-TNIDDLCKQSDFIIITSALTPDTHHLINRAR 118 (274)
Q Consensus 42 gktVGIIGlG~IG~~iA~~L~~~-G~~vv~~~~r~~~~~-a~~~g~~~-~sl~ell~~aDvVil~lPlt~~T~~li~~~~ 118 (274)
..+|||||+|+||+.+++.++.. +++.+++.++..... ....++.. .+.++++.+.|+|++|+|..... ...
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~~~~v~~~~d~~e~l~~iDVViIctPs~th~-----~~~ 77 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDTETPVYAVADDEKHLDDVDVLILCMGSATDI-----PEQ 77 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhhcCCccccCCHHHhccCCCEEEEcCCCccCH-----HHH
Confidence 36899999999999999999765 787776655553222 22233322 36777888999999999974432 233
Q ss_pred HhcCCCCcEEEEcCCC--chhcHHHHHhhhhh--hhheeeh
Q psy3240 119 LESMKPGAILINTSRG--QLVDQEALIDFIAD--IRVISIS 155 (274)
Q Consensus 119 l~~mk~gailINv~RG--~iVde~aL~~~L~~--~~i~~~D 155 (274)
.+.++.|.=+|+..-- .+.+..+.++..+. .++.++-
T Consensus 78 ~~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vsvi~ 118 (324)
T TIGR01921 78 APYFAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVSVIS 118 (324)
T ss_pred HHHHHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEEEEE
Confidence 3445667677776431 22233444444444 2444433
No 209
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=97.43 E-value=0.0007 Score=65.83 Aligned_cols=95 Identities=21% Similarity=0.349 Sum_probs=71.5
Q ss_pred CCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCC------------------Chh--HhhcCCcccCHHHHhc-
Q psy3240 37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSK------------------KPE--ADKRGAEHTNIDDLCK- 95 (274)
Q Consensus 37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~------------------~~~--a~~~g~~~~sl~ell~- 95 (274)
|.+|+|+||.|=|+|+.|+.+|+.|...|+++++++++.. +.. ....+.+..+-++++.
T Consensus 202 g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~~e~~~~ 281 (411)
T COG0334 202 GDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYITNEELLEV 281 (411)
T ss_pred CCCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEccccccccc
Confidence 4569999999999999999999999989999888887766 111 2223445555566664
Q ss_pred ccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchh
Q psy3240 96 QSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLV 137 (274)
Q Consensus 96 ~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iV 137 (274)
.|||.+-| ++.+.|+.+..++++.. +++-.+-+.+-
T Consensus 282 ~cDIl~Pc-----A~~n~I~~~na~~l~ak-~V~EgAN~P~t 317 (411)
T COG0334 282 DCDILIPC-----ALENVITEDNADQLKAK-IVVEGANGPTT 317 (411)
T ss_pred cCcEEccc-----ccccccchhhHHHhhhc-EEEeccCCCCC
Confidence 68987654 45677888888888866 77777777765
No 210
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=97.42 E-value=0.00052 Score=55.10 Aligned_cols=88 Identities=16% Similarity=0.203 Sum_probs=53.8
Q ss_pred EEEEEc-cChHHHHHHHHHccC-CCeEEEE-eCCCC-ChhHh-hcC-Cc-----ccCHHHH-hcccCEEEEcCCCCcccH
Q psy3240 44 TVGIVG-CGRIGLSVLEKLIPY-KVSKFLY-TSRSK-KPEAD-KRG-AE-----HTNIDDL-CKQSDFIIITSALTPDTH 111 (274)
Q Consensus 44 tVGIIG-lG~IG~~iA~~L~~~-G~~vv~~-~~r~~-~~~a~-~~g-~~-----~~sl~el-l~~aDvVil~lPlt~~T~ 111 (274)
+++|+| .|.+|+.+++.+... +++++.. .++.. ..... ..+ .. ..+.+++ ..++|+|++|+|... +.
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~-~~ 79 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGV-SK 79 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHH-HH
Confidence 589999 599999999999874 6665554 32221 11111 111 11 1121222 258999999999753 33
Q ss_pred HhccHHHHhcCCCCcEEEEcCC
Q psy3240 112 HLINRARLESMKPGAILINTSR 133 (274)
Q Consensus 112 ~li~~~~l~~mk~gailINv~R 133 (274)
..+. .....+++|.++|+++.
T Consensus 80 ~~~~-~~~~~~~~g~~viD~s~ 100 (122)
T smart00859 80 EIAP-LLPKAAEAGVKVIDLSS 100 (122)
T ss_pred HHHH-HHHhhhcCCCEEEECCc
Confidence 3332 23455799999999984
No 211
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.41 E-value=0.00055 Score=64.02 Aligned_cols=91 Identities=18% Similarity=0.279 Sum_probs=59.5
Q ss_pred CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-Hhh-------c-CC------cc-cCHHHHh-cccCEEEEcCC
Q psy3240 43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADK-------R-GA------EH-TNIDDLC-KQSDFIIITSA 105 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~-------~-g~------~~-~sl~ell-~~aDvVil~lP 105 (274)
++|+|||.|.||..+|..|...|.++.++.++....+ ... . +. .. .++++.+ ..+|+|++++|
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavk 80 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVP 80 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeC
Confidence 3699999999999999999999987776665432111 111 0 11 11 2566666 58999999999
Q ss_pred CCcccHHhccHHHHh-cCCCCcEEEEcCCCc
Q psy3240 106 LTPDTHHLINRARLE-SMKPGAILINTSRGQ 135 (274)
Q Consensus 106 lt~~T~~li~~~~l~-~mk~gailINv~RG~ 135 (274)
. ..++.++. +..+ .+++++.+|...-|-
T Consensus 81 s-~~~~~~l~-~l~~~~l~~~~~vv~~~nGi 109 (326)
T PRK14620 81 T-QQLRTICQ-QLQDCHLKKNTPILICSKGI 109 (326)
T ss_pred H-HHHHHHHH-HHHHhcCCCCCEEEEEEcCe
Confidence 5 34555543 2333 567777777666553
No 212
>PRK06823 ornithine cyclodeaminase; Validated
Probab=97.41 E-value=0.00071 Score=63.84 Aligned_cols=89 Identities=19% Similarity=0.264 Sum_probs=64.2
Q ss_pred CCEEEEEccChHHHHHHHHHcc-CCCeEEEEeCCCCChh---H---hhcCCcc--c-CHHHHhcccCEEEEcCCCCcccH
Q psy3240 42 NSTVGIVGCGRIGLSVLEKLIP-YKVSKFLYTSRSKKPE---A---DKRGAEH--T-NIDDLCKQSDFIIITSALTPDTH 111 (274)
Q Consensus 42 gktVGIIGlG~IG~~iA~~L~~-~G~~vv~~~~r~~~~~---a---~~~g~~~--~-sl~ell~~aDvVil~lPlt~~T~ 111 (274)
-++++|||.|..++..++.+.. +..+.+.+++|+.... + .+.+... + +.+++++.||+|+.+++. +.
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s---~~ 204 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPS---RE 204 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCC---CC
Confidence 4799999999999999988763 4555565556555332 1 1223332 3 789999999999998874 44
Q ss_pred HhccHHHHhcCCCCcEEEEcCCCch
Q psy3240 112 HLINRARLESMKPGAILINTSRGQL 136 (274)
Q Consensus 112 ~li~~~~l~~mk~gailINv~RG~i 136 (274)
.+++.+. +|||+.++.+|.-..
T Consensus 205 P~~~~~~---l~~G~hi~~iGs~~p 226 (315)
T PRK06823 205 PLLQAED---IQPGTHITAVGADSP 226 (315)
T ss_pred ceeCHHH---cCCCcEEEecCCCCc
Confidence 6777665 589999999986444
No 213
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.40 E-value=0.00042 Score=66.03 Aligned_cols=88 Identities=23% Similarity=0.313 Sum_probs=66.6
Q ss_pred CCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc---C----HHHHhcccCEEEEcCCCCcccHH
Q psy3240 41 QNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT---N----IDDLCKQSDFIIITSALTPDTHH 112 (274)
Q Consensus 41 ~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~---s----l~ell~~aDvVil~lPlt~~T~~ 112 (274)
.|++|+|+|+|-.|....|.++++|+++++++.+..+.+ ++++|+... + .+++-+.+|+|+.++| ....
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~~~~-- 242 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-PATL-- 242 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-hhhH--
Confidence 499999999999999999999999998888887777666 788887542 1 2233334999999998 4332
Q ss_pred hccHHHHhcCCCCcEEEEcCCC
Q psy3240 113 LINRARLESMKPGAILINTSRG 134 (274)
Q Consensus 113 li~~~~l~~mk~gailINv~RG 134 (274)
...++.++++..++-+|=.
T Consensus 243 ---~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 243 ---EPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred ---HHHHHHHhcCCEEEEECCC
Confidence 2456667888887777654
No 214
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=97.40 E-value=0.00082 Score=62.25 Aligned_cols=111 Identities=13% Similarity=0.119 Sum_probs=72.8
Q ss_pred CCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCCh-h--HhhcCC----ccc----CHHHHhcccCEEEEcCCCC
Q psy3240 39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKP-E--ADKRGA----EHT----NIDDLCKQSDFIIITSALT 107 (274)
Q Consensus 39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~-~--a~~~g~----~~~----sl~ell~~aDvVil~lPlt 107 (274)
+++++++.|||.|.+|++++..|...|++.+...+|+... + +...+. ... ++.+.+.++|+|+.++|..
T Consensus 122 ~~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g 201 (282)
T TIGR01809 122 PLAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPAD 201 (282)
T ss_pred ccCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCC
Confidence 5789999999999999999999999998655555555432 2 222211 111 2335568899999999975
Q ss_pred cccHHhccHHHH---------hcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeeh
Q psy3240 108 PDTHHLINRARL---------ESMKPGAILINTSRGQLVDQEALIDFIADIRVISIS 155 (274)
Q Consensus 108 ~~T~~li~~~~l---------~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D 155 (274)
.. ++...+ ..++++.+++|+--.. .+..|.+.-+++|+..+|
T Consensus 202 ~~----~~~~~l~~~~~~~~~~~~~~~~~v~D~vY~P--~~T~ll~~A~~~G~~~~~ 252 (282)
T TIGR01809 202 VP----ADYVDLFATVPFLLLKRKSSEGIFLDAAYDP--WPTPLVAIVSAAGWRVIS 252 (282)
T ss_pred CC----CCHHHhhhhhhhhccccCCCCcEEEEEeeCC--CCCHHHHHHHHCCCEEEC
Confidence 32 222222 1235677888876433 235677777777877666
No 215
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=97.39 E-value=0.00055 Score=65.33 Aligned_cols=90 Identities=16% Similarity=0.227 Sum_probs=62.2
Q ss_pred EEEEEccChHHHHHHHHHccCC--------CeEEEEeCCC---CChh---Hh--h------cCC------cc-cCHHHHh
Q psy3240 44 TVGIVGCGRIGLSVLEKLIPYK--------VSKFLYTSRS---KKPE---AD--K------RGA------EH-TNIDDLC 94 (274)
Q Consensus 44 tVGIIGlG~IG~~iA~~L~~~G--------~~vv~~~~r~---~~~~---a~--~------~g~------~~-~sl~ell 94 (274)
+|+|||.|+.|.++|..|...| .++..|.++. .... .. . .++ .. .++++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 5899999999999999998766 7777776421 1110 00 0 022 12 3788999
Q ss_pred cccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCc
Q psy3240 95 KQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQ 135 (274)
Q Consensus 95 ~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~ 135 (274)
+.||+|++++|. ...+.++ .+.-+.++++..+|+++-|=
T Consensus 81 ~~ADiIIlAVPs-~~i~~vl-~~l~~~l~~~~~iVs~tKGi 119 (342)
T TIGR03376 81 KGADILVFVIPH-QFLEGIC-KQLKGHVKPNARAISCIKGL 119 (342)
T ss_pred hcCCEEEEECCh-HHHHHHH-HHHHhhcCCCCEEEEEeCCc
Confidence 999999999995 3444444 34445678889999998773
No 216
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=97.37 E-value=0.00066 Score=64.55 Aligned_cols=87 Identities=22% Similarity=0.345 Sum_probs=64.9
Q ss_pred CCEEEEEccChHHHHHHHHHcc-CCCeEEEEeCCCCChh---H---hh-cCC--ccc-CHHHHhcccCEEEEcCCCCccc
Q psy3240 42 NSTVGIVGCGRIGLSVLEKLIP-YKVSKFLYTSRSKKPE---A---DK-RGA--EHT-NIDDLCKQSDFIIITSALTPDT 110 (274)
Q Consensus 42 gktVGIIGlG~IG~~iA~~L~~-~G~~vv~~~~r~~~~~---a---~~-~g~--~~~-sl~ell~~aDvVil~lPlt~~T 110 (274)
-++++|||.|..+..-++.++. ++.+.+-.++|.+... + .+ .+. ..+ +.+++++.||+|+.++|.++
T Consensus 130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~-- 207 (330)
T COG2423 130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE-- 207 (330)
T ss_pred CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC--
Confidence 4689999999999999999975 6776665555554332 1 12 222 233 88999999999999999655
Q ss_pred HHhccHHHHhcCCCCcEEEEcCCC
Q psy3240 111 HHLINRARLESMKPGAILINTSRG 134 (274)
Q Consensus 111 ~~li~~~~l~~mk~gailINv~RG 134 (274)
.++..+.+ +||+.+..+|..
T Consensus 208 -Pil~~~~l---~~G~hI~aiGad 227 (330)
T COG2423 208 -PVLKAEWL---KPGTHINAIGAD 227 (330)
T ss_pred -CeecHhhc---CCCcEEEecCCC
Confidence 67777665 799999999863
No 217
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.35 E-value=0.00071 Score=65.14 Aligned_cols=93 Identities=13% Similarity=0.230 Sum_probs=62.4
Q ss_pred CCEEEEEccChHHHHHHHHHccCC-------CeEEEEeCCCCC-----hh-Hhh--c------C------Ccc-cCHHHH
Q psy3240 42 NSTVGIVGCGRIGLSVLEKLIPYK-------VSKFLYTSRSKK-----PE-ADK--R------G------AEH-TNIDDL 93 (274)
Q Consensus 42 gktVGIIGlG~IG~~iA~~L~~~G-------~~vv~~~~r~~~-----~~-a~~--~------g------~~~-~sl~el 93 (274)
.++|+|||.|..|.++|..|...| .++..|.++... .+ ... . + +.. .+++++
T Consensus 11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~ea 90 (365)
T PTZ00345 11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEA 90 (365)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHH
Confidence 468999999999999999998665 666676555421 11 100 0 1 112 278889
Q ss_pred hcccCEEEEcCCCCcccHHhccHHHHh--cCCCCcEEEEcCCCch
Q psy3240 94 CKQSDFIIITSALTPDTHHLINRARLE--SMKPGAILINTSRGQL 136 (274)
Q Consensus 94 l~~aDvVil~lPlt~~T~~li~~~~l~--~mk~gailINv~RG~i 136 (274)
++.||+|++++|. ...+.++. +.-+ .+++++++|+++-|=-
T Consensus 91 v~~aDiIvlAVPs-q~l~~vl~-~l~~~~~l~~~~~iIS~aKGIe 133 (365)
T PTZ00345 91 VEDADLLIFVIPH-QFLESVLS-QIKENNNLKKHARAISLTKGII 133 (365)
T ss_pred HhcCCEEEEEcCh-HHHHHHHH-HhccccccCCCCEEEEEeCCcc
Confidence 9999999999995 34444442 2223 4667889999887643
No 218
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.34 E-value=0.00078 Score=63.89 Aligned_cols=94 Identities=13% Similarity=0.211 Sum_probs=66.6
Q ss_pred CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-----------H----hhcCCcc-cCHHHHhcccCEEEEcCCC
Q psy3240 43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-----------A----DKRGAEH-TNIDDLCKQSDFIIITSAL 106 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-----------a----~~~g~~~-~sl~ell~~aDvVil~lPl 106 (274)
++|+|||.|.-|.++|+.|...|.++..|.++..... . ...++.. .++.++++.||+|++.+|.
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avPs 81 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVPS 81 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECCh
Confidence 6899999999999999999999987777765422111 0 0011222 3799999999999999994
Q ss_pred CcccHHhccHHHHhcCCCCcEEEEcCCCchhc
Q psy3240 107 TPDTHHLINRARLESMKPGAILINTSRGQLVD 138 (274)
Q Consensus 107 t~~T~~li~~~~l~~mk~gailINv~RG~iVd 138 (274)
...+.++.. .-..+++++.+|+++-|=-.+
T Consensus 82 -~~~r~v~~~-l~~~l~~~~~iv~~sKGie~~ 111 (329)
T COG0240 82 -QALREVLRQ-LKPLLLKDAIIVSATKGLEPE 111 (329)
T ss_pred -HHHHHHHHH-HhhhccCCCeEEEEeccccCC
Confidence 445555432 225678999999998765443
No 219
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=97.34 E-value=0.0012 Score=60.55 Aligned_cols=101 Identities=20% Similarity=0.201 Sum_probs=58.4
Q ss_pred CEEEEEccChHHHHHHHHHccC-CCeEEEEeCCCCChh--Hhhc--CCcc-cCHHHHhcccCEEEEcCCCCcccHHhccH
Q psy3240 43 STVGIVGCGRIGLSVLEKLIPY-KVSKFLYTSRSKKPE--ADKR--GAEH-TNIDDLCKQSDFIIITSALTPDTHHLINR 116 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~~L~~~-G~~vv~~~~r~~~~~--a~~~--g~~~-~sl~ell~~aDvVil~lPlt~~T~~li~~ 116 (274)
.+|||||+|.||+.+++.+... +++...+..+..... .... ++.. .+++++-.+.|+|+.|.|.... ..+ -.
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~~~-~e~-~~ 79 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHAAL-KEH-VV 79 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHHHH-HHH-HH
Confidence 4899999999999999999765 455444433332222 1111 3333 3788875569999999985322 221 12
Q ss_pred HHHhcCCCCcEEEEcCCCchhcH---HHHHhhhhh
Q psy3240 117 ARLESMKPGAILINTSRGQLVDQ---EALIDFIAD 148 (274)
Q Consensus 117 ~~l~~mk~gailINv~RG~iVde---~aL~~~L~~ 148 (274)
.. ++.|.-++-.+-+...|. +.|.+..++
T Consensus 80 ~a---L~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~ 111 (265)
T PRK13303 80 PI---LKAGIDCAVISVGALADEALRERLEQAAEA 111 (265)
T ss_pred HH---HHcCCCEEEeChHHhcCHHHHHHHHHHHHH
Confidence 33 344555554555544443 344554443
No 220
>PRK14030 glutamate dehydrogenase; Provisional
Probab=97.34 E-value=0.001 Score=65.64 Aligned_cols=110 Identities=16% Similarity=0.170 Sum_probs=72.4
Q ss_pred CCCCCCCEEEEEccChHHHHHHHHHccCCCeEEE--------EeCCCCChhH-------------------hhc-CCccc
Q psy3240 37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFL--------YTSRSKKPEA-------------------DKR-GAEHT 88 (274)
Q Consensus 37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~--------~~~r~~~~~a-------------------~~~-g~~~~ 88 (274)
|.+|+|+||.|=|+|++|+.+|+.|..+|+++++ |++.--.... ... +++..
T Consensus 223 g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i 302 (445)
T PRK14030 223 GIDIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFF 302 (445)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEc
Confidence 5689999999999999999999999999998887 4422111111 011 33333
Q ss_pred CHHHHhc-ccCEEEEcCCCCcccHHhccHHHHhcCC--CCcEEEEcCCCchhcHHHHHhhhhhhhhee
Q psy3240 89 NIDDLCK-QSDFIIITSALTPDTHHLINRARLESMK--PGAILINTSRGQLVDQEALIDFIADIRVIS 153 (274)
Q Consensus 89 sl~ell~-~aDvVil~lPlt~~T~~li~~~~l~~mk--~gailINv~RG~iVde~aL~~~L~~~~i~~ 153 (274)
+.++++. .|||++-|. +.+.|+.+..+++. +-.+++-.+-+ ++..+|- +.|+++||-+
T Consensus 303 ~~~~~~~~~cDVliPcA-----l~n~I~~~na~~l~~~~ak~V~EgAN~-p~t~eA~-~iL~~rGI~~ 363 (445)
T PRK14030 303 AGKKPWEQKVDIALPCA-----TQNELNGEDADKLIKNGVLCVAEVSNM-GCTAEAI-DKFIAAKQLF 363 (445)
T ss_pred CCccceeccccEEeecc-----ccccCCHHHHHHHHHcCCeEEEeCCCC-CCCHHHH-HHHHHCCCEE
Confidence 4445543 588887765 55778877777762 23466666666 5655543 5567766654
No 221
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.30 E-value=0.00061 Score=60.23 Aligned_cols=72 Identities=15% Similarity=0.128 Sum_probs=49.6
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh--HhhcC-Cccc--CH-HHHhcccCEEEEcCCCCcc
Q psy3240 38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--ADKRG-AEHT--NI-DDLCKQSDFIIITSALTPD 109 (274)
Q Consensus 38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a~~~g-~~~~--sl-~ell~~aDvVil~lPlt~~ 109 (274)
-+|+|++|.|||.|.+|...++.|...|++++++.+...... ....+ +... .+ ++.+..+|+|+.++...+.
T Consensus 6 l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~el 83 (202)
T PRK06718 6 IDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDPRV 83 (202)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCHHH
Confidence 479999999999999999999999999997777765432221 11112 2221 22 3457889999988775433
No 222
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=97.30 E-value=0.001 Score=62.37 Aligned_cols=90 Identities=18% Similarity=0.192 Sum_probs=64.1
Q ss_pred CCCEEEEEccChHHHHHHHHHcc-CCCeEEEEeCCCCChh---Hhh----cCCc--cc-CHHHHhcccCEEEEcCCCCcc
Q psy3240 41 QNSTVGIVGCGRIGLSVLEKLIP-YKVSKFLYTSRSKKPE---ADK----RGAE--HT-NIDDLCKQSDFIIITSALTPD 109 (274)
Q Consensus 41 ~gktVGIIGlG~IG~~iA~~L~~-~G~~vv~~~~r~~~~~---a~~----~g~~--~~-sl~ell~~aDvVil~lPlt~~ 109 (274)
.-+++||||.|..|+.-++.+.. +..+.+..++|+.... +.. .++. .+ ++++++++||+|+.++|.+
T Consensus 116 da~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~-- 193 (301)
T PRK06407 116 NVENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSD-- 193 (301)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC--
Confidence 35899999999999998888764 5666666666655332 111 2432 23 8999999999999988853
Q ss_pred cHHhccHHHHhcCCCCcEEEEcCCCch
Q psy3240 110 THHLINRARLESMKPGAILINTSRGQL 136 (274)
Q Consensus 110 T~~li~~~~l~~mk~gailINv~RG~i 136 (274)
..++..+.+ |||+.+.-+|.-.+
T Consensus 194 -~P~~~~~~l---~pg~hV~aiGs~~p 216 (301)
T PRK06407 194 -TPIFNRKYL---GDEYHVNLAGSNYP 216 (301)
T ss_pred -CcEecHHHc---CCCceEEecCCCCC
Confidence 467776654 78988877776443
No 223
>PRK08291 ectoine utilization protein EutC; Validated
Probab=97.30 E-value=0.00098 Score=62.98 Aligned_cols=87 Identities=17% Similarity=0.281 Sum_probs=61.0
Q ss_pred CCCEEEEEccChHHHHHHHHHcc-CCCeEEEEeCCCCCh-h--Hh----hcCCc---ccCHHHHhcccCEEEEcCCCCcc
Q psy3240 41 QNSTVGIVGCGRIGLSVLEKLIP-YKVSKFLYTSRSKKP-E--AD----KRGAE---HTNIDDLCKQSDFIIITSALTPD 109 (274)
Q Consensus 41 ~gktVGIIGlG~IG~~iA~~L~~-~G~~vv~~~~r~~~~-~--a~----~~g~~---~~sl~ell~~aDvVil~lPlt~~ 109 (274)
..++++|||.|.+|+..+..+.. .+.+.+..++|+... + +. ..++. ..++++++++||+|+.++|..
T Consensus 131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~-- 208 (330)
T PRK08291 131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSE-- 208 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCC--
Confidence 35799999999999999888874 566555555555432 2 12 12443 237899999999999998864
Q ss_pred cHHhccHHHHhcCCCCcEEEEcCC
Q psy3240 110 THHLINRARLESMKPGAILINTSR 133 (274)
Q Consensus 110 T~~li~~~~l~~mk~gailINv~R 133 (274)
..++..+. +++|+.+..++.
T Consensus 209 -~p~i~~~~---l~~g~~v~~vg~ 228 (330)
T PRK08291 209 -EPILKAEW---LHPGLHVTAMGS 228 (330)
T ss_pred -CcEecHHH---cCCCceEEeeCC
Confidence 35666554 578887777664
No 224
>PLN02477 glutamate dehydrogenase
Probab=97.30 E-value=0.0013 Score=64.33 Aligned_cols=115 Identities=15% Similarity=0.230 Sum_probs=76.5
Q ss_pred CCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCC--------hh-H-h---hc-------CCcccCHHHHh-
Q psy3240 36 CGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKK--------PE-A-D---KR-------GAEHTNIDDLC- 94 (274)
Q Consensus 36 ~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~--------~~-a-~---~~-------g~~~~sl~ell- 94 (274)
.|.+|+|++|+|.|+|++|+.+|+.|...|++++.+.+.... .. . . +. +.+..+.++++
T Consensus 200 ~g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i~~~e~l~ 279 (410)
T PLN02477 200 HGKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPIDPDDILV 279 (410)
T ss_pred cCCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEecCcccee
Confidence 367899999999999999999999999999987756554310 11 1 0 00 11223444443
Q ss_pred cccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheee-hhhc
Q psy3240 95 KQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISI-SMVT 158 (274)
Q Consensus 95 ~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~-D~~~ 158 (274)
..|||++-|. ..+.|+++..++++ -.+++-.+-+.+ ..+ ..+.|+++||.++ |.+.
T Consensus 280 ~~~DvliP~A-----l~~~I~~~na~~i~-ak~I~egAN~p~-t~e-a~~~L~~rGI~~~PD~~a 336 (410)
T PLN02477 280 EPCDVLIPAA-----LGGVINKENAADVK-AKFIVEAANHPT-DPE-ADEILRKKGVVVLPDIYA 336 (410)
T ss_pred ccccEEeecc-----ccccCCHhHHHHcC-CcEEEeCCCCCC-CHH-HHHHHHHCCcEEEChHHh
Confidence 4789888765 34568888888775 457777777776 333 3467788777654 3443
No 225
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=97.29 E-value=0.00058 Score=70.49 Aligned_cols=87 Identities=13% Similarity=0.079 Sum_probs=61.4
Q ss_pred EEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhcccccccceeecCCCcccCccc
Q psy3240 100 IIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVS 179 (274)
Q Consensus 100 Vil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~~~~~~~~~~~~~~ 179 (274)
|++|+|. ..+..++ ++..+.+++++++.|+++.+.--.+++.+. +.++..
T Consensus 1 vila~Pv-~~~~~~~-~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~----------------------------l~~~~~ 50 (673)
T PRK11861 1 VLLAAPV-AQTGPLL-ARIAPFLDASTIVTDAGSTKSDVVAAARAA----------------------------LGARIG 50 (673)
T ss_pred CEEEcCH-HHHHHHH-HHHhhhCCCCcEEEecCcccHHHHHHHHHh----------------------------ccccCC
Confidence 5788885 3445555 355577899999999999775443444441 222334
Q ss_pred eeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCCCCCCccccCCcEEEccCCCC
Q psy3240 180 AFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGS 242 (274)
Q Consensus 180 ~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~nvi~tPH~~~ 242 (274)
.|+++||++|.| ++|... ++..||+..++++||.-..
T Consensus 51 ~fvg~HPMaG~e-------------~~G~~~-------------a~~~Lf~~~~~il~p~~~~ 87 (673)
T PRK11861 51 QFVPGHPIAGRE-------------SSGVDA-------------ALADLYVGRNVVLCALPEN 87 (673)
T ss_pred eEEecCCcCcCc-------------chhhhh-------------hChhHhCCCeEEEecCCCC
Confidence 799999999999 566544 4578999999999996543
No 226
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=97.29 E-value=0.00048 Score=64.75 Aligned_cols=91 Identities=20% Similarity=0.274 Sum_probs=54.1
Q ss_pred CCEEEEEccChHHHHHHHHHcc-CCCeEEEEeCCCCCh-h--H---hhcCCcc--c-CHHHHhcccCEEEEcCCCCcccH
Q psy3240 42 NSTVGIVGCGRIGLSVLEKLIP-YKVSKFLYTSRSKKP-E--A---DKRGAEH--T-NIDDLCKQSDFIIITSALTPDTH 111 (274)
Q Consensus 42 gktVGIIGlG~IG~~iA~~L~~-~G~~vv~~~~r~~~~-~--a---~~~g~~~--~-sl~ell~~aDvVil~lPlt~~T~ 111 (274)
-++++|||.|..|+.-++.+.. +..+.+.+++|.... + + ...+... + +.++++++||+|+.++|.+..+
T Consensus 128 ~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~~- 206 (313)
T PF02423_consen 128 ARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTPA- 206 (313)
T ss_dssp --EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSEE-
T ss_pred CceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCCC-
Confidence 3589999999999999998864 667666666665432 2 1 1224432 2 8999999999999999876543
Q ss_pred HhccHHHHhcCCCCcEEEEcCCCch
Q psy3240 112 HLINRARLESMKPGAILINTSRGQL 136 (274)
Q Consensus 112 ~li~~~~l~~mk~gailINv~RG~i 136 (274)
.+++.+ .++||+.++.+|....
T Consensus 207 P~~~~~---~l~~g~hi~~iGs~~~ 228 (313)
T PF02423_consen 207 PVFDAE---WLKPGTHINAIGSYTP 228 (313)
T ss_dssp ESB-GG---GS-TT-EEEE-S-SST
T ss_pred ccccHH---HcCCCcEEEEecCCCC
Confidence 667654 4689999999998655
No 227
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=97.26 E-value=0.00066 Score=60.18 Aligned_cols=89 Identities=15% Similarity=0.150 Sum_probs=58.8
Q ss_pred CCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh--Hhhc-CCccc--C-HHHHhcccCEEEEcCCCCcccHH
Q psy3240 39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--ADKR-GAEHT--N-IDDLCKQSDFIIITSALTPDTHH 112 (274)
Q Consensus 39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a~~~-g~~~~--s-l~ell~~aDvVil~lPlt~~T~~ 112 (274)
+|+|++|.|||.|.+|..-++.|..+|++++++++...... ..+. .+... + -.+.+..+|+|+.+....+-
T Consensus 6 ~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~d~~l--- 82 (205)
T TIGR01470 6 NLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATDDEEL--- 82 (205)
T ss_pred EcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCCCHHH---
Confidence 69999999999999999999999999998888776554221 1122 23321 1 13456789998887654322
Q ss_pred hccHHHHhcCCCCcEEEEcC
Q psy3240 113 LINRARLESMKPGAILINTS 132 (274)
Q Consensus 113 li~~~~l~~mk~gailINv~ 132 (274)
|.......++-.++||+.
T Consensus 83 --n~~i~~~a~~~~ilvn~~ 100 (205)
T TIGR01470 83 --NRRVAHAARARGVPVNVV 100 (205)
T ss_pred --HHHHHHHHHHcCCEEEEC
Confidence 334444444455677753
No 228
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=97.23 E-value=0.0016 Score=64.31 Aligned_cols=111 Identities=18% Similarity=0.182 Sum_probs=69.6
Q ss_pred CCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCC--------Chh-H--------------h-----hcCCccc
Q psy3240 37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSK--------KPE-A--------------D-----KRGAEHT 88 (274)
Q Consensus 37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~--------~~~-a--------------~-----~~g~~~~ 88 (274)
+.+|+|+||.|=|+|++|+.+|+.|..+|++++.+.+... ... . . ..++++.
T Consensus 232 ~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~ 311 (454)
T PTZ00079 232 NDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYV 311 (454)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEe
Confidence 5789999999999999999999999999998875655441 000 0 0 0023333
Q ss_pred CHHHHh-cccCEEEEcCCCCcccHHhccHHHHhcC-CCCcEEEEcCCCchhcHHHHHhhhhhhhhee
Q psy3240 89 NIDDLC-KQSDFIIITSALTPDTHHLINRARLESM-KPGAILINTSRGQLVDQEALIDFIADIRVIS 153 (274)
Q Consensus 89 sl~ell-~~aDvVil~lPlt~~T~~li~~~~l~~m-k~gailINv~RG~iVde~aL~~~L~~~~i~~ 153 (274)
+.++++ ..||+.+-|. +.+.|+.+..+.+ +.++.+|--+--.+...+ -.+.|+++||.+
T Consensus 312 ~~~~~~~~~cDI~iPcA-----~~n~I~~~~a~~l~~~~ak~V~EgAN~p~t~e-A~~~L~~~GI~~ 372 (454)
T PTZ00079 312 PGKKPWEVPCDIAFPCA-----TQNEINLEDAKLLIKNGCKLVAEGANMPTTIE-ATHLFKKNGVIF 372 (454)
T ss_pred CCcCcccCCccEEEecc-----ccccCCHHHHHHHHHcCCeEEEecCCCCCCHH-HHHHHHHCCcEE
Confidence 333433 3688887764 5567877766655 445555544433334443 345566666653
No 229
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.22 E-value=0.002 Score=58.31 Aligned_cols=95 Identities=26% Similarity=0.379 Sum_probs=62.0
Q ss_pred CEEEEEccChHHHHHHHHHcc--CCCeEEEEeCCCC-Chh--HhhcCCcc-cCHHHHhcccCEEEEcCCCCcccHHhccH
Q psy3240 43 STVGIVGCGRIGLSVLEKLIP--YKVSKFLYTSRSK-KPE--ADKRGAEH-TNIDDLCKQSDFIIITSALTPDTHHLINR 116 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~~L~~--~G~~vv~~~~r~~-~~~--a~~~g~~~-~sl~ell~~aDvVil~lPlt~~T~~li~~ 116 (274)
.+|||||+|.||+.+.+.++. ..++.+.++++.. +.. ....+... .+++|++++.|+|+=|... ++.+.+
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS~-~Av~e~--- 76 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAASP-EAVREY--- 76 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCCH-HHHHHH---
Confidence 479999999999999999984 2454444444443 332 22233322 4799999999999987742 233322
Q ss_pred HHHhcCCCCcEEEEcCCCchhcHHHH
Q psy3240 117 ARLESMKPGAILINTSRGQLVDQEAL 142 (274)
Q Consensus 117 ~~l~~mk~gailINv~RG~iVde~aL 142 (274)
..+.|+.|.=+|=+|-|.+.|+.-+
T Consensus 77 -~~~~L~~g~d~iV~SVGALad~~l~ 101 (255)
T COG1712 77 -VPKILKAGIDVIVMSVGALADEGLR 101 (255)
T ss_pred -hHHHHhcCCCEEEEechhccChHHH
Confidence 3344566777777788888866533
No 230
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=97.22 E-value=0.0012 Score=61.39 Aligned_cols=115 Identities=12% Similarity=0.196 Sum_probs=75.9
Q ss_pred CCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCC----hh--HhhcC------CcccCH------HHHhcccC
Q psy3240 37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKK----PE--ADKRG------AEHTNI------DDLCKQSD 98 (274)
Q Consensus 37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~----~~--a~~~g------~~~~sl------~ell~~aD 98 (274)
+.++.++++.|+|.|-.+++++..|...|++.+...+|+.. .+ +...+ +...++ .+.+.++|
T Consensus 119 ~~~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~~aD 198 (288)
T PRK12749 119 GFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASAD 198 (288)
T ss_pred CCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhhcccCC
Confidence 45688999999999999999999998889866655555532 11 22221 112233 23566799
Q ss_pred EEEEcCCCCcc--cHH-hccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeeh
Q psy3240 99 FIIITSALTPD--THH-LINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISIS 155 (274)
Q Consensus 99 vVil~lPlt~~--T~~-li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D 155 (274)
+|+.++|..-. ... ++.. .+.++++.++.|+--... +..|++.-+++|+..+|
T Consensus 199 ivINaTp~Gm~~~~~~~~~~~--~~~l~~~~~v~D~vY~P~--~T~ll~~A~~~G~~~~~ 254 (288)
T PRK12749 199 ILTNGTKVGMKPLENESLVND--ISLLHPGLLVTECVYNPH--MTKLLQQAQQAGCKTID 254 (288)
T ss_pred EEEECCCCCCCCCCCCCCCCc--HHHCCCCCEEEEecCCCc--cCHHHHHHHHCCCeEEC
Confidence 99999997421 111 1111 234678899999875442 56778878888888777
No 231
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=97.20 E-value=0.0021 Score=59.42 Aligned_cols=94 Identities=18% Similarity=0.227 Sum_probs=60.9
Q ss_pred CCEEEEEccChHHHHHHHHHccC---CCeEEEEeCCCC-ChhHhhcCCccc-CHHHH-hcccCEEEEcCCCCcccHHhcc
Q psy3240 42 NSTVGIVGCGRIGLSVLEKLIPY---KVSKFLYTSRSK-KPEADKRGAEHT-NIDDL-CKQSDFIIITSALTPDTHHLIN 115 (274)
Q Consensus 42 gktVGIIGlG~IG~~iA~~L~~~---G~~vv~~~~r~~-~~~a~~~g~~~~-sl~el-l~~aDvVil~lPlt~~T~~li~ 115 (274)
..+|||||+|.||+.+++.+..- +++.+.+.++.. +..........+ +++++ ....|+|+=|.... . +-
T Consensus 2 ~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~~~~~~~l~~ll~~~~DlVVE~A~~~-a----v~ 76 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGRVALLDGLPGLLAWRPDLVVEAAGQQ-A----IA 76 (267)
T ss_pred ceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhccCcccCCHHHHhhcCCCEEEECCCHH-H----HH
Confidence 36899999999999999998643 354444444443 222222224444 79997 57899999988632 2 21
Q ss_pred HHHHhcCCCCcEEEEcCCCchhcHH
Q psy3240 116 RARLESMKPGAILINTSRGQLVDQE 140 (274)
Q Consensus 116 ~~~l~~mk~gailINv~RG~iVde~ 140 (274)
+--.+-|+.|.-++=+|-|.+.|.+
T Consensus 77 e~~~~iL~~g~dlvv~SvGALaD~~ 101 (267)
T PRK13301 77 EHAEGCLTAGLDMIICSAGALADDA 101 (267)
T ss_pred HHHHHHHhcCCCEEEEChhHhcCHH
Confidence 2222334667788888889988754
No 232
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=97.18 E-value=0.00091 Score=60.98 Aligned_cols=114 Identities=24% Similarity=0.365 Sum_probs=72.1
Q ss_pred CCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCC-------C-Chh-----HhhcCC-------------cccCHH-
Q psy3240 39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRS-------K-KPE-----ADKRGA-------------EHTNID- 91 (274)
Q Consensus 39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~-------~-~~~-----a~~~g~-------------~~~sl~- 91 (274)
+++|+++.|-|+|++|+.+|+.|...|++++...+.. . ... ..+.+. +..+-+
T Consensus 29 ~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 108 (244)
T PF00208_consen 29 SLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDD 108 (244)
T ss_dssp SSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHC
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEecccc
Confidence 6999999999999999999999999999776653322 1 111 111222 112232
Q ss_pred HHh-cccCEEEEcCCCCcccHHhccHHHHh-cCCCCc-EEEEcCCCchhcHHHHHhhhhhhhheee-hhhcc
Q psy3240 92 DLC-KQSDFIIITSALTPDTHHLINRARLE-SMKPGA-ILINTSRGQLVDQEALIDFIADIRVISI-SMVTN 159 (274)
Q Consensus 92 ell-~~aDvVil~lPlt~~T~~li~~~~l~-~mk~ga-ilINv~RG~iVde~aL~~~L~~~~i~~~-D~~~~ 159 (274)
+++ ..||+++.|.- .+.|+.+... .+++++ +++-.+-+.+- .++.. .|+++||.++ |.+.|
T Consensus 109 ~il~~~~DiliP~A~-----~~~I~~~~~~~~i~~~akiIvegAN~p~t-~~a~~-~L~~rGI~viPD~~aN 173 (244)
T PF00208_consen 109 EILSVDCDILIPCAL-----GNVINEDNAPSLIKSGAKIIVEGANGPLT-PEADE-ILRERGILVIPDFLAN 173 (244)
T ss_dssp HGGTSSSSEEEEESS-----STSBSCHHHCHCHHTT-SEEEESSSSSBS-HHHHH-HHHHTT-EEE-HHHHT
T ss_pred ccccccccEEEEcCC-----CCeeCHHHHHHHHhccCcEEEeCcchhcc-HHHHH-HHHHCCCEEEcchhhc
Confidence 555 57999999843 3557777777 666554 45555566654 44443 7888887443 55543
No 233
>PRK06199 ornithine cyclodeaminase; Validated
Probab=97.15 E-value=0.0012 Score=63.85 Aligned_cols=91 Identities=22% Similarity=0.393 Sum_probs=64.8
Q ss_pred CCEEEEEccChHHHHHHHHHcc-C-CCeEEEEeCCCCChh---Hh----hc-CC---ccc-CHHHHhcccCEEEEcCCCC
Q psy3240 42 NSTVGIVGCGRIGLSVLEKLIP-Y-KVSKFLYTSRSKKPE---AD----KR-GA---EHT-NIDDLCKQSDFIIITSALT 107 (274)
Q Consensus 42 gktVGIIGlG~IG~~iA~~L~~-~-G~~vv~~~~r~~~~~---a~----~~-g~---~~~-sl~ell~~aDvVil~lPlt 107 (274)
-++++|||.|..++.-++.+.. + ..+.+.+++|..... +. .. ++ ..+ +.+++++.||+|+.+++.+
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s~ 234 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSGE 234 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCCC
Confidence 4789999999999999998876 4 366666666665332 11 11 22 223 7999999999999999864
Q ss_pred c---ccHHhccHHHHhcCCCCcEEEEcCCCc
Q psy3240 108 P---DTHHLINRARLESMKPGAILINTSRGQ 135 (274)
Q Consensus 108 ~---~T~~li~~~~l~~mk~gailINv~RG~ 135 (274)
. .+..++..+.+ |||+.++.++.-+
T Consensus 235 ~~~~s~~Pv~~~~~l---kpG~hv~~ig~~e 262 (379)
T PRK06199 235 TGDPSTYPYVKREWV---KPGAFLLMPAACR 262 (379)
T ss_pred CCCCCcCcEecHHHc---CCCcEEecCCccc
Confidence 4 34567776654 7999888777644
No 234
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=97.12 E-value=0.0016 Score=52.69 Aligned_cols=101 Identities=14% Similarity=0.297 Sum_probs=66.8
Q ss_pred CEEEEEc----cChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCc-ccCHHHHhcccCEEEEcCCCCcccHHhccHH
Q psy3240 43 STVGIVG----CGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAE-HTNIDDLCKQSDFIIITSALTPDTHHLINRA 117 (274)
Q Consensus 43 ktVGIIG----lG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~-~~sl~ell~~aDvVil~lPlt~~T~~li~~~ 117 (274)
|+|+||| -+..|..+.+.|+..|.+++.++++...- .|.. +.+++|.-...|++++++|. +.+..+++
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i----~G~~~y~sl~e~p~~iDlavv~~~~-~~~~~~v~-- 73 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEI----LGIKCYPSLAEIPEPIDLAVVCVPP-DKVPEIVD-- 73 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEE----TTEE-BSSGGGCSST-SEEEE-S-H-HHHHHHHH--
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEE----CcEEeeccccCCCCCCCEEEEEcCH-HHHHHHHH--
Confidence 6899999 78999999999999998777776655322 2443 34888855789999999994 34445553
Q ss_pred HHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheee
Q psy3240 118 RLESMKPGAILINTSRGQLVDQEALIDFIADIRVISI 154 (274)
Q Consensus 118 ~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~ 154 (274)
.+..+..+.+++..+ ..++++.+.+++.|+.++
T Consensus 74 ~~~~~g~~~v~~~~g----~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 74 EAAALGVKAVWLQPG----AESEELIEAAREAGIRVI 106 (116)
T ss_dssp HHHHHT-SEEEE-TT----S--HHHHHHHHHTT-EEE
T ss_pred HHHHcCCCEEEEEcc----hHHHHHHHHHHHcCCEEE
Confidence 233346678888888 677888888888888766
No 235
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=97.10 E-value=0.0022 Score=59.82 Aligned_cols=113 Identities=20% Similarity=0.252 Sum_probs=76.9
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh---HhhcC---C--cccCHHHH--hcccCEEEEcCCCC
Q psy3240 38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE---ADKRG---A--EHTNIDDL--CKQSDFIIITSALT 107 (274)
Q Consensus 38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~---a~~~g---~--~~~sl~el--l~~aDvVil~lPlt 107 (274)
.+..|+++.|+|.|-.+++++..|+..|++.+.+.+|+.... +...+ . ....+.++ ..++|+|+.++|..
T Consensus 122 ~~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~G 201 (283)
T COG0169 122 VDVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPVG 201 (283)
T ss_pred cccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCCC
Confidence 466799999999999999999999999976666666655332 22222 1 11222222 22699999999985
Q ss_pred cccH---HhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeeh
Q psy3240 108 PDTH---HLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISIS 155 (274)
Q Consensus 108 ~~T~---~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D 155 (274)
-.-. ..++ .+.++++.++.|+--... +..|++.-+++|+..+|
T Consensus 202 m~~~~~~~~~~---~~~l~~~~~v~D~vY~P~--~TplL~~A~~~G~~~id 247 (283)
T COG0169 202 MAGPEGDSPVP---AELLPKGAIVYDVVYNPL--ETPLLREARAQGAKTID 247 (283)
T ss_pred CCCCCCCCCCc---HHhcCcCCEEEEeccCCC--CCHHHHHHHHcCCeEEC
Confidence 4332 1333 455789999999865553 55677777777877776
No 236
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.10 E-value=0.0013 Score=53.02 Aligned_cols=85 Identities=21% Similarity=0.259 Sum_probs=50.8
Q ss_pred EEEEEc-cChHHHHHHHHHcc-CCCeEEEEeCCCC-Ch-h-Hhhc----CCcc---cC-HHHHhcccCEEEEcCCCCccc
Q psy3240 44 TVGIVG-CGRIGLSVLEKLIP-YKVSKFLYTSRSK-KP-E-ADKR----GAEH---TN-IDDLCKQSDFIIITSALTPDT 110 (274)
Q Consensus 44 tVGIIG-lG~IG~~iA~~L~~-~G~~vv~~~~r~~-~~-~-a~~~----g~~~---~s-l~ell~~aDvVil~lPlt~~T 110 (274)
||+||| .|.+|+.+.+.|.. ..++.+....+.. .. . .... +... .+ ..+.+..+|+|++|+|....
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~~- 79 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHGAS- 79 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHHHH-
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchhHH-
Confidence 699999 99999999999975 3454443333333 11 1 1111 1211 11 23455999999999995322
Q ss_pred HHhccHHHHhcCCCCcEEEEcCC
Q psy3240 111 HHLINRARLESMKPGAILINTSR 133 (274)
Q Consensus 111 ~~li~~~~l~~mk~gailINv~R 133 (274)
..+. ... +++|..+||.|.
T Consensus 80 ~~~~-~~~---~~~g~~ViD~s~ 98 (121)
T PF01118_consen 80 KELA-PKL---LKAGIKVIDLSG 98 (121)
T ss_dssp HHHH-HHH---HHTTSEEEESSS
T ss_pred HHHH-HHH---hhCCcEEEeCCH
Confidence 2222 222 478999999985
No 237
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=97.05 E-value=0.0024 Score=59.32 Aligned_cols=114 Identities=9% Similarity=0.152 Sum_probs=73.3
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHccCCCe-EEEEeCCC---CChh--Hhhc---C----CcccC------HHHHhcccC
Q psy3240 38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVS-KFLYTSRS---KKPE--ADKR---G----AEHTN------IDDLCKQSD 98 (274)
Q Consensus 38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~-vv~~~~r~---~~~~--a~~~---g----~~~~s------l~ell~~aD 98 (274)
.++.++++.|+|.|.+|+++|..|...|++ +++++++. .+.+ +.+. + +...+ +++.++.+|
T Consensus 122 ~~~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~D 201 (289)
T PRK12548 122 VDVKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSD 201 (289)
T ss_pred CCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCC
Confidence 357899999999999999999999999997 44554433 1211 1111 1 11112 334567789
Q ss_pred EEEEcCCCCc--ccHH-hccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeeh
Q psy3240 99 FIIITSALTP--DTHH-LINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISIS 155 (274)
Q Consensus 99 vVil~lPlt~--~T~~-li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D 155 (274)
+|+.++|..- .... .+. ....++++.+++|+--... +..|.+.-+++|+..+|
T Consensus 202 ilINaTp~Gm~~~~~~~~~~--~~~~l~~~~~v~D~vY~P~--~T~ll~~A~~~G~~~~~ 257 (289)
T PRK12548 202 ILVNATLVGMKPNDGETNIK--DTSVFRKDLVVADTVYNPK--KTKLLEDAEAAGCKTVG 257 (289)
T ss_pred EEEEeCCCCCCCCCCCCCCC--cHHhcCCCCEEEEecCCCC--CCHHHHHHHHCCCeeeC
Confidence 9999999742 1111 120 1234678889999876442 36677777777887666
No 238
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=97.05 E-value=0.00075 Score=55.67 Aligned_cols=96 Identities=17% Similarity=0.257 Sum_probs=62.7
Q ss_pred EEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc--------------C-HHHHhcccCEEEEcCCCCc
Q psy3240 45 VGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT--------------N-IDDLCKQSDFIIITSALTP 108 (274)
Q Consensus 45 VGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~--------------s-l~ell~~aDvVil~lPlt~ 108 (274)
|+|+|.|.||.-+|.+|+..|.++..+.++. ..+ ..+.|.... + ..+....+|+|++++.. .
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa-~ 78 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKA-Y 78 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSG-G
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEecc-c
Confidence 6899999999999999999999877777665 222 233333211 1 12467789999999974 3
Q ss_pred ccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHh
Q psy3240 109 DTHHLINRARLESMKPGAILINTSRGQLVDQEALID 144 (274)
Q Consensus 109 ~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~ 144 (274)
+++..+.. ....+.+++.++-.--| +-.++.+.+
T Consensus 79 ~~~~~l~~-l~~~~~~~t~iv~~qNG-~g~~~~l~~ 112 (151)
T PF02558_consen 79 QLEQALQS-LKPYLDPNTTIVSLQNG-MGNEEVLAE 112 (151)
T ss_dssp GHHHHHHH-HCTGEETTEEEEEESSS-SSHHHHHHC
T ss_pred chHHHHHH-HhhccCCCcEEEEEeCC-CCcHHHHHH
Confidence 45555543 55556677677766544 344556655
No 239
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=97.01 E-value=0.0026 Score=60.62 Aligned_cols=91 Identities=20% Similarity=0.292 Sum_probs=56.3
Q ss_pred CEEEEEcc-ChHHHHHHHHHccC-CCeEE-EEeCCCCChh--Hhhc----C---Ccc--cCHHHHhcccCEEEEcCCCCc
Q psy3240 43 STVGIVGC-GRIGLSVLEKLIPY-KVSKF-LYTSRSKKPE--ADKR----G---AEH--TNIDDLCKQSDFIIITSALTP 108 (274)
Q Consensus 43 ktVGIIGl-G~IG~~iA~~L~~~-G~~vv-~~~~r~~~~~--a~~~----g---~~~--~sl~ell~~aDvVil~lPlt~ 108 (274)
++|+|+|. |.+|+.+++.|... +.+++ +++++..... .... + ... .+.++++.++|+|++|+|..
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~- 79 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHG- 79 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCch-
Confidence 47999998 99999999999876 55555 3344432111 1111 1 112 25566667899999999953
Q ss_pred ccHHhccHHHHhcCCCCcEEEEcCCCchhc
Q psy3240 109 DTHHLINRARLESMKPGAILINTSRGQLVD 138 (274)
Q Consensus 109 ~T~~li~~~~l~~mk~gailINv~RG~iVd 138 (274)
..+.+.. +. .+.|..+||.|..--.+
T Consensus 80 ~s~~~~~-~~---~~~G~~VIDlS~~fR~~ 105 (346)
T TIGR01850 80 VSAELAP-EL---LAAGVKVIDLSADFRLK 105 (346)
T ss_pred HHHHHHH-HH---HhCCCEEEeCChhhhcC
Confidence 2222221 11 25789999998433333
No 240
>PTZ00117 malate dehydrogenase; Provisional
Probab=96.98 E-value=0.0039 Score=58.73 Aligned_cols=93 Identities=23% Similarity=0.359 Sum_probs=59.3
Q ss_pred CCCCEEEEEccChHHHHHHHHHccCC-CeEEEEeCCCCChh--Hh--h-----cCC----cc-cCHHHHhcccCEEEEcC
Q psy3240 40 LQNSTVGIVGCGRIGLSVLEKLIPYK-VSKFLYTSRSKKPE--AD--K-----RGA----EH-TNIDDLCKQSDFIIITS 104 (274)
Q Consensus 40 L~gktVGIIGlG~IG~~iA~~L~~~G-~~vv~~~~r~~~~~--a~--~-----~g~----~~-~sl~ell~~aDvVil~l 104 (274)
++.++|+|||.|.||..+|..+...| .+++.+|.+..... +. . .+. .. .+++ .++.||+|+++.
T Consensus 3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita 81 (319)
T PTZ00117 3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA 81 (319)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence 46789999999999999999988777 56677776554322 11 0 111 11 2455 779999999999
Q ss_pred --CCCc-ccH--------Hhcc--HHHHhcCCCCcEEEEcCC
Q psy3240 105 --ALTP-DTH--------HLIN--RARLESMKPGAILINTSR 133 (274)
Q Consensus 105 --Plt~-~T~--------~li~--~~~l~~mk~gailINv~R 133 (274)
|..+ .++ .++. .+.+....|.+++|+++-
T Consensus 82 g~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsN 123 (319)
T PTZ00117 82 GVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTN 123 (319)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 4333 111 1111 123444568889999863
No 241
>PRK07589 ornithine cyclodeaminase; Validated
Probab=96.95 E-value=0.0031 Score=60.37 Aligned_cols=91 Identities=11% Similarity=0.135 Sum_probs=62.9
Q ss_pred CCEEEEEccChHHHHHHHHHc-cCCCeEEEEeCCCCChh---Hh---hcCCc--c-cCHHHHhcccCEEEEcCCCCcccH
Q psy3240 42 NSTVGIVGCGRIGLSVLEKLI-PYKVSKFLYTSRSKKPE---AD---KRGAE--H-TNIDDLCKQSDFIIITSALTPDTH 111 (274)
Q Consensus 42 gktVGIIGlG~IG~~iA~~L~-~~G~~vv~~~~r~~~~~---a~---~~g~~--~-~sl~ell~~aDvVil~lPlt~~T~ 111 (274)
-++++|||.|..++.-++.+. -+..+.+.+++|+.... .. +.++. . .++++++++||+|+.++|.+ +..
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~-~~~ 207 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADK-TNA 207 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC-CCC
Confidence 478999999999998888665 35666666666655432 11 12332 2 38999999999999999743 222
Q ss_pred HhccHHHHhcCCCCcEEEEcCCCch
Q psy3240 112 HLINRARLESMKPGAILINTSRGQL 136 (274)
Q Consensus 112 ~li~~~~l~~mk~gailINv~RG~i 136 (274)
.++..+. +|||+.+.-+|.-.+
T Consensus 208 Pvl~~~~---lkpG~hV~aIGs~~p 229 (346)
T PRK07589 208 TILTDDM---VEPGMHINAVGGDCP 229 (346)
T ss_pred ceecHHH---cCCCcEEEecCCCCC
Confidence 5566654 499999888886443
No 242
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=96.94 E-value=0.0033 Score=63.34 Aligned_cols=114 Identities=13% Similarity=0.195 Sum_probs=72.5
Q ss_pred CCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh--HhhcCCcccCHHH---Hh-cccCEEEEcCCCCcc-
Q psy3240 37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--ADKRGAEHTNIDD---LC-KQSDFIIITSALTPD- 109 (274)
Q Consensus 37 g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a~~~g~~~~sl~e---ll-~~aDvVil~lPlt~~- 109 (274)
+.++.+|++.|+|.|.+|++++..|...|++++++++...+.+ +...+....++++ .. ..+|+|+.++|..-.
T Consensus 374 ~~~~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l~~~~~~~~~~~~~~~~~~diiINtT~vGm~~ 453 (529)
T PLN02520 374 GSPLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELADAVGGQALTLADLENFHPEEGMILANTTSVGMQP 453 (529)
T ss_pred ccCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceeeHhHhhhhccccCeEEEecccCCCCC
Confidence 3468899999999999999999999999996555543322222 2223322223332 22 357899998886421
Q ss_pred -cHH-hccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeeh
Q psy3240 110 -THH-LINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISIS 155 (274)
Q Consensus 110 -T~~-li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D 155 (274)
... .++. ..+++..+++|+.-... +..|++.-+++|+..+|
T Consensus 454 ~~~~~pl~~---~~l~~~~~v~D~vY~P~--~T~ll~~A~~~G~~~~~ 496 (529)
T PLN02520 454 NVDETPISK---HALKHYSLVFDAVYTPK--ITRLLREAEESGAIIVS 496 (529)
T ss_pred CCCCCcccH---hhCCCCCEEEEeccCCC--cCHHHHHHHHCCCeEeC
Confidence 111 1332 34677889999865442 35677777777776665
No 243
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=96.93 E-value=0.0054 Score=49.89 Aligned_cols=99 Identities=21% Similarity=0.299 Sum_probs=55.5
Q ss_pred EEEEEcc-ChHHHHHHHHHcc-CCCeEEEEeCCCCChh-----Hh-----hcCCcc-cCHHHHhcccCEEEEcCCCCccc
Q psy3240 44 TVGIVGC-GRIGLSVLEKLIP-YKVSKFLYTSRSKKPE-----AD-----KRGAEH-TNIDDLCKQSDFIIITSALTPDT 110 (274)
Q Consensus 44 tVGIIGl-G~IG~~iA~~L~~-~G~~vv~~~~r~~~~~-----a~-----~~g~~~-~sl~ell~~aDvVil~lPlt~~T 110 (274)
+|+|+|+ |+||+.+++.+.. -+++.+....+...+. .. ..++.. .++++++.++|+|+-.. ..+.+
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT-~p~~~ 80 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT-NPDAV 80 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES--HHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC-ChHHh
Confidence 7999999 9999999999987 6776655544443111 11 223333 38999999999998866 22222
Q ss_pred HHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhh
Q psy3240 111 HHLINRARLESMKPGAILINTSRGQLVDQEALIDFIA 147 (274)
Q Consensus 111 ~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~ 147 (274)
...+ +..+ +.|.-+|-..+|---.+.+.++.+.
T Consensus 81 ~~~~-~~~~---~~g~~~ViGTTG~~~~~~~~l~~~a 113 (124)
T PF01113_consen 81 YDNL-EYAL---KHGVPLVIGTTGFSDEQIDELEELA 113 (124)
T ss_dssp HHHH-HHHH---HHT-EEEEE-SSSHHHHHHHHHHHT
T ss_pred HHHH-HHHH---hCCCCEEEECCCCCHHHHHHHHHHh
Confidence 2222 1222 3355555555555444444445443
No 244
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.92 E-value=0.0075 Score=59.27 Aligned_cols=112 Identities=14% Similarity=0.186 Sum_probs=71.6
Q ss_pred CCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCCh------hHhhcCCccc---CHHHHhcccCEEEEcCCCCcc
Q psy3240 39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKP------EADKRGAEHT---NIDDLCKQSDFIIITSALTPD 109 (274)
Q Consensus 39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~------~a~~~g~~~~---sl~ell~~aDvVil~lPlt~~ 109 (274)
.+.+++|+|+|+|..|.++|+.|+..|+++.++|...... .....|+... ...+.+.++|+|+.. |.-+.
T Consensus 11 ~~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~S-pgi~~ 89 (458)
T PRK01710 11 FIKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKT-PSMRI 89 (458)
T ss_pred hhcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEEC-CCCCC
Confidence 4678999999999999999999999999877777543211 1234466442 234556889999887 54444
Q ss_pred cHHhccH------------HHHhcC-CCCcEEEEcCCCchhcHHHHHhhhhhhhh
Q psy3240 110 THHLINR------------ARLESM-KPGAILINTSRGQLVDQEALIDFIADIRV 151 (274)
Q Consensus 110 T~~li~~------------~~l~~m-k~gailINv~RG~iVde~aL~~~L~~~~i 151 (274)
+...+.+ +.+.+. +...+-|--+.|+.--.+-+...|+..+.
T Consensus 90 ~~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~~g~ 144 (458)
T PRK01710 90 DSPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKEEGY 144 (458)
T ss_pred CchHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHhCCC
Confidence 3333211 122222 22344455556887777777777776554
No 245
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=96.92 E-value=0.016 Score=56.42 Aligned_cols=103 Identities=17% Similarity=0.189 Sum_probs=72.9
Q ss_pred CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhc----------------C-----Ccc-cCHHHHhcccCEE
Q psy3240 43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKR----------------G-----AEH-TNIDDLCKQSDFI 100 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~----------------g-----~~~-~sl~ell~~aDvV 100 (274)
++|.|+|.|-+|...|..|..+|.+++.+|....+-+.... + ..+ .+.++.++.+|++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~ 80 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVV 80 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEE
Confidence 58999999999999999999999988888765443221111 1 112 2678889999999
Q ss_pred EEcCCCCcccHHhcc--------HHHHhcCCCCcEEEEcCCCchhcHHHHHhh
Q psy3240 101 IITSALTPDTHHLIN--------RARLESMKPGAILINTSRGQLVDQEALIDF 145 (274)
Q Consensus 101 il~lPlt~~T~~li~--------~~~l~~mk~gailINv~RG~iVde~aL~~~ 145 (274)
++++|..+...+-+| ++..+.++..+++|+=|+..+=-.+.+.+.
T Consensus 81 fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~ 133 (414)
T COG1004 81 FIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAK 133 (414)
T ss_pred EEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHH
Confidence 999996544333222 345666777799999998776555555553
No 246
>KOG2653|consensus
Probab=96.91 E-value=0.0036 Score=60.13 Aligned_cols=115 Identities=16% Similarity=0.324 Sum_probs=89.7
Q ss_pred CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh---Hhh-cCCc---ccCHHHHh---cccCEEEEcCCCCcccHH
Q psy3240 43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE---ADK-RGAE---HTNIDDLC---KQSDFIIITSALTPDTHH 112 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~---a~~-~g~~---~~sl~ell---~~aDvVil~lPlt~~T~~ 112 (274)
..+|+||++.||+.++.+....|+.+.+|++...+.. +.+ .|.. ..|++|++ ++--+|++.+-.......
T Consensus 7 ~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pVD~ 86 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPVDQ 86 (487)
T ss_pred cchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcHHH
Confidence 5689999999999999999999997777766655543 222 2222 23888864 556788888877666666
Q ss_pred hccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhc
Q psy3240 113 LINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVT 158 (274)
Q Consensus 113 li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~ 158 (274)
+| ++..+.|.+|-++||-+-..--|...=.+.|+.+|+-|+.+-.
T Consensus 87 ~I-~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GV 131 (487)
T KOG2653|consen 87 FI-EELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGV 131 (487)
T ss_pred HH-HHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCc
Confidence 66 4677889999999999999989999999999999999998543
No 247
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=96.89 E-value=0.0065 Score=55.48 Aligned_cols=64 Identities=17% Similarity=0.306 Sum_probs=45.1
Q ss_pred CEEEEEcc-ChHHHHHHHHHcc-CCCeEEEEeCCCCChh--HhhcCCcc-cCHHHHhcccCEEEEcCCC
Q psy3240 43 STVGIVGC-GRIGLSVLEKLIP-YKVSKFLYTSRSKKPE--ADKRGAEH-TNIDDLCKQSDFIIITSAL 106 (274)
Q Consensus 43 ktVGIIGl-G~IG~~iA~~L~~-~G~~vv~~~~r~~~~~--a~~~g~~~-~sl~ell~~aDvVil~lPl 106 (274)
.+|+|+|+ |.||+.+++.+.. -+++++...++..... ....++.. .+++++++.+|+|+.++|.
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~p 70 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTTP 70 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCCH
Confidence 48999998 9999999999875 4677666554443221 22233433 4899999889999977753
No 248
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=96.85 E-value=0.0059 Score=57.26 Aligned_cols=101 Identities=17% Similarity=0.275 Sum_probs=61.7
Q ss_pred CEEEEEccChHHHHHHHHHccCCC-eEEEEeCCCCChhHhhc-----------C--Ccc-cCHHHHhcccCEEEEcCCCC
Q psy3240 43 STVGIVGCGRIGLSVLEKLIPYKV-SKFLYTSRSKKPEADKR-----------G--AEH-TNIDDLCKQSDFIIITSALT 107 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~~L~~~G~-~vv~~~~r~~~~~a~~~-----------g--~~~-~sl~ell~~aDvVil~lPlt 107 (274)
++|+|||.|.||..+|..+...|. +++.+|........... . +.. .++++ +++||+|+++++..
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~p 80 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGLP 80 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCCC
Confidence 589999999999999999887664 67788764443221110 1 112 26666 78999999999842
Q ss_pred cc---c--------HHhccH--HHHhcCCCCcEEEEcCCCchhcHHHHHh
Q psy3240 108 PD---T--------HHLINR--ARLESMKPGAILINTSRGQLVDQEALID 144 (274)
Q Consensus 108 ~~---T--------~~li~~--~~l~~mk~gailINv~RG~iVde~aL~~ 144 (274)
.. + ..++.. +.+....+++++|+++--.=+-...+.+
T Consensus 81 ~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~~~ 130 (305)
T TIGR01763 81 RKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVAWQ 130 (305)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHH
Confidence 21 2 122211 2233445788999987533333334444
No 249
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=96.85 E-value=0.0077 Score=59.55 Aligned_cols=131 Identities=17% Similarity=0.224 Sum_probs=85.4
Q ss_pred CCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-----HhhcCCccc---CHHHHhcccCEEEEcCCCCccc
Q psy3240 39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-----ADKRGAEHT---NIDDLCKQSDFIIITSALTPDT 110 (274)
Q Consensus 39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-----a~~~g~~~~---sl~ell~~aDvVil~lPlt~~T 110 (274)
.+.+++|.|+|+|.-|.++|+.|+..|++++++|.+..... ....++... ...+....+|+|+.. |.-+-+
T Consensus 4 ~~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~S-PGi~~~ 82 (448)
T COG0771 4 DFQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKS-PGIPPT 82 (448)
T ss_pred cccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEEC-CCCCCC
Confidence 34599999999999999999999999998888886665521 112344332 122677889999885 332333
Q ss_pred HHhccH------------HHHhcC-CCCcEEEEcC-CCchhcHHHHHhhhhhhhheeehhhcccccccceeecCCCcccC
Q psy3240 111 HHLINR------------ARLESM-KPGAILINTS-RGQLVDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKG 176 (274)
Q Consensus 111 ~~li~~------------~~l~~m-k~gailINv~-RG~iVde~aL~~~L~~~~i~~~D~~~~~~~~~~~~~~~~~~~~~ 176 (274)
..++.+ +.+-+. .+..++-=+| -|+.-...-+...|++.|..
T Consensus 83 ~p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~------------------------ 138 (448)
T COG0771 83 HPLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLD------------------------ 138 (448)
T ss_pred CHHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCC------------------------
Confidence 233321 223332 2333444444 48877777777767764443
Q ss_pred ccceeeeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCC
Q psy3240 177 HVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPE 220 (274)
Q Consensus 177 ~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~e 220 (274)
+.-.|.|...++|+..++
T Consensus 139 --------------------------~~lgGNIG~p~l~~~~~~ 156 (448)
T COG0771 139 --------------------------ALLGGNIGTPALELLEQA 156 (448)
T ss_pred --------------------------ceeccccCccHHHhhccc
Confidence 777899999999998874
No 250
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.80 E-value=0.0045 Score=61.49 Aligned_cols=116 Identities=16% Similarity=0.281 Sum_probs=71.6
Q ss_pred CCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc---CHHHHhcccCEEEEcCCCCccc
Q psy3240 35 MCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT---NIDDLCKQSDFIIITSALTPDT 110 (274)
Q Consensus 35 ~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~---sl~ell~~aDvVil~lPlt~~T 110 (274)
|.-..+.|++|.|+|+|.+|.+.++.|+..|++++++|.+..... ..+.|+... ...+.++.+|+|+..-...+..
T Consensus 5 ~~~~~~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~SpGi~~~~ 84 (488)
T PRK03369 5 MLDPLLPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSPGFRPTA 84 (488)
T ss_pred ccccccCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECCCCCCCC
Confidence 333456899999999999999999999999998877775433222 344566442 2345677899888865433332
Q ss_pred HHh----------ccHHHHh-cC-------CC-CcEEEEcCCCchhcHHHHHhhhhhhh
Q psy3240 111 HHL----------INRARLE-SM-------KP-GAILINTSRGQLVDQEALIDFIADIR 150 (274)
Q Consensus 111 ~~l----------i~~~~l~-~m-------k~-gailINv~RG~iVde~aL~~~L~~~~ 150 (274)
.-+ +++-.+. .+ ++ ..+-|--+-|+.-...-+...|+..|
T Consensus 85 p~~~~a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~~g 143 (488)
T PRK03369 85 PVLAAAAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIAAG 143 (488)
T ss_pred HHHHHHHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHHcC
Confidence 212 2211121 11 12 23334445688777777777777654
No 251
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=96.78 E-value=0.0088 Score=46.99 Aligned_cols=83 Identities=20% Similarity=0.318 Sum_probs=54.1
Q ss_pred EEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-----CH---HH-HhcccCEEEEcCCCCcccHHhc
Q psy3240 45 VGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-----NI---DD-LCKQSDFIIITSALTPDTHHLI 114 (274)
Q Consensus 45 VGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-----sl---~e-ll~~aDvVil~lPlt~~T~~li 114 (274)
|.|+|+|.+|+.+++.|+..+.++++.+.+..... +.+.++... +. .+ -++++|.|+++.+....+ +.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n--~~ 78 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEEN--LL 78 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHH--HH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHHH--HH
Confidence 57999999999999999997767888887655444 455565421 22 22 257899999999864433 33
Q ss_pred cHHHHhcCCCCcEEE
Q psy3240 115 NRARLESMKPGAILI 129 (274)
Q Consensus 115 ~~~~l~~mk~gailI 129 (274)
-...++.+.+...++
T Consensus 79 ~~~~~r~~~~~~~ii 93 (116)
T PF02254_consen 79 IALLARELNPDIRII 93 (116)
T ss_dssp HHHHHHHHTTTSEEE
T ss_pred HHHHHHHHCCCCeEE
Confidence 334555555555554
No 252
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=96.78 E-value=0.0067 Score=56.41 Aligned_cols=113 Identities=15% Similarity=0.178 Sum_probs=74.9
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCCh-h--Hhhc----CC---cccC---HHHHhcccCEEEEcC
Q psy3240 38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKP-E--ADKR----GA---EHTN---IDDLCKQSDFIIITS 104 (274)
Q Consensus 38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~-~--a~~~----g~---~~~s---l~ell~~aDvVil~l 104 (274)
.++.++++.|+|.|-.|++++-.|...|++.+...+|+... + +... +. ...+ +++.+..+|+|+.++
T Consensus 123 ~~~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaT 202 (283)
T PRK14027 123 PNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNAT 202 (283)
T ss_pred cCcCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcC
Confidence 35778999999999999999999999998766555655432 2 2211 11 1122 234667899999999
Q ss_pred CCCccc--HHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeeh
Q psy3240 105 ALTPDT--HHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISIS 155 (274)
Q Consensus 105 Plt~~T--~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D 155 (274)
|..-.. ...++. +.++++.++.|+--.. .+..+.+.-+++|+..+|
T Consensus 203 p~Gm~~~~~~~~~~---~~l~~~~~v~D~vY~P--~~T~ll~~A~~~G~~~~~ 250 (283)
T PRK14027 203 PMGMPAHPGTAFDV---SCLTKDHWVGDVVYMP--IETELLKAARALGCETLD 250 (283)
T ss_pred CCCCCCCCCCCCCH---HHcCCCcEEEEcccCC--CCCHHHHHHHHCCCEEEc
Confidence 975321 111332 3456788999886544 345677777777877666
No 253
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.77 E-value=0.0039 Score=54.91 Aligned_cols=37 Identities=27% Similarity=0.270 Sum_probs=31.4
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHccCCCe-EEEEeCC
Q psy3240 38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVS-KFLYTSR 74 (274)
Q Consensus 38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~-vv~~~~r 74 (274)
..|++++|.|+|+|.+|..+|+.|...|.. .+++|+.
T Consensus 17 ~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 17 QRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 469999999999999999999999999984 4555544
No 254
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=96.75 E-value=0.0048 Score=59.92 Aligned_cols=102 Identities=19% Similarity=0.132 Sum_probs=64.0
Q ss_pred CEEEEEccChHHHHHHHHHccCC-CeEEEEeCCCCChh-HhhcC---Ccc--------cCHHHHhcccCEEEEcCCCCcc
Q psy3240 43 STVGIVGCGRIGLSVLEKLIPYK-VSKFLYTSRSKKPE-ADKRG---AEH--------TNIDDLCKQSDFIIITSALTPD 109 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~~L~~~G-~~vv~~~~r~~~~~-a~~~g---~~~--------~sl~ell~~aDvVil~lPlt~~ 109 (274)
++|.|||+|.||+.+|..|...| .++.+.++...+.. ..... ++. ..+.+++++.|+|+.++|..-.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~~ 81 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPFVD 81 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCchhh
Confidence 68999999999999999998888 65555554434333 22221 211 1567899999999999995422
Q ss_pred cHHhccHHHH-hcCCCCcEEEEcCCCchhcHHHHHhhhhhhhh
Q psy3240 110 THHLINRARL-ESMKPGAILINTSRGQLVDQEALIDFIADIRV 151 (274)
Q Consensus 110 T~~li~~~~l-~~mk~gailINv~RG~iVde~aL~~~L~~~~i 151 (274)
...+ +.++-|.-.+|++=.+.- ..++-+.-++.|+
T Consensus 82 ------~~i~ka~i~~gv~yvDts~~~~~-~~~~~~~a~~Agi 117 (389)
T COG1748 82 ------LTILKACIKTGVDYVDTSYYEEP-PWKLDEEAKKAGI 117 (389)
T ss_pred ------HHHHHHHHHhCCCEEEcccCCch-hhhhhHHHHHcCe
Confidence 2333 334667778888754332 1334343334443
No 255
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=96.72 E-value=0.008 Score=56.12 Aligned_cols=96 Identities=23% Similarity=0.297 Sum_probs=60.1
Q ss_pred CEEEEEccChHHHHHHHHHccCCC--eEEEEeCCCCChh--Hhhc-------CC--cc-cCHHHHhcccCEEEEcCCCCc
Q psy3240 43 STVGIVGCGRIGLSVLEKLIPYKV--SKFLYTSRSKKPE--ADKR-------GA--EH-TNIDDLCKQSDFIIITSALTP 108 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~~L~~~G~--~vv~~~~r~~~~~--a~~~-------g~--~~-~sl~ell~~aDvVil~lPlt~ 108 (274)
++|+|||.|.+|+.+|..|...|. ++++++....+.. +.+. +. .. ....+.++.||+|+++.....
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~~~ 80 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGAPQ 80 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCCCC
Confidence 489999999999999999988884 4667776554433 1111 11 11 122345789999999987531
Q ss_pred c---cHH-h-------cc--HHHHhcCCCCcEEEEcCCCchhcHH
Q psy3240 109 D---THH-L-------IN--RARLESMKPGAILINTSRGQLVDQE 140 (274)
Q Consensus 109 ~---T~~-l-------i~--~~~l~~mk~gailINv~RG~iVde~ 140 (274)
. +|. + +. .+.+.+..|.+++|+++ .++|.-
T Consensus 81 ~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs--NP~d~~ 123 (306)
T cd05291 81 KPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS--NPVDVI 123 (306)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec--ChHHHH
Confidence 1 221 1 11 12344456789999997 455433
No 256
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=96.70 E-value=0.0027 Score=58.95 Aligned_cols=100 Identities=23% Similarity=0.326 Sum_probs=67.0
Q ss_pred CCCCCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChh-------HhhcCCcc-cCHHHHhcccCEEEEcCCC
Q psy3240 36 CGPALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPE-------ADKRGAEH-TNIDDLCKQSDFIIITSAL 106 (274)
Q Consensus 36 ~g~~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~-------a~~~g~~~-~sl~ell~~aDvVil~lPl 106 (274)
.|.+|+..+|+|+|+ |.||..+|+.|.+.+++....-+...... ....+... .|++..+.+.|+++-....
T Consensus 161 lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~l~~l~e~~~~~~i~s~d~~~~~e~i~v~vAs~ 240 (351)
T COG5322 161 LGIDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQEELGRGKIMSLDYALPQEDILVWVASM 240 (351)
T ss_pred hCcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhhhhhcccccCCCeeeeccccccccceEEEEeec
Confidence 589999999999996 99999999999998885554442221111 12233333 3677666666665554432
Q ss_pred CcccHHhccHHHHhcCCCCcEEEEcCCCchhcHH
Q psy3240 107 TPDTHHLINRARLESMKPGAILINTSRGQLVDQE 140 (274)
Q Consensus 107 t~~T~~li~~~~l~~mk~gailINv~RG~iVde~ 140 (274)
.+-..|+.+. +|||+.++|-++-.=+|+.
T Consensus 241 --~~g~~I~pq~---lkpg~~ivD~g~P~dvd~~ 269 (351)
T COG5322 241 --PKGVEIFPQH---LKPGCLIVDGGYPKDVDTS 269 (351)
T ss_pred --CCCceechhh---ccCCeEEEcCCcCcccccc
Confidence 2224466554 5999999999998766654
No 257
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=96.66 E-value=0.0041 Score=49.26 Aligned_cols=79 Identities=15% Similarity=0.248 Sum_probs=55.1
Q ss_pred hHHHHHHHHHccCCCeEEEEeCCCCChhHhh----cCCccc-CHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCc
Q psy3240 52 RIGLSVLEKLIPYKVSKFLYTSRSKKPEADK----RGAEHT-NIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGA 126 (274)
Q Consensus 52 ~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~----~g~~~~-sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~ga 126 (274)
.-+..+++.|+..|+++.+||+.-....... .++... ++++.++.+|+|+++++- ++-+.+--.+....|+++.
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h-~~f~~l~~~~~~~~~~~~~ 95 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATDH-DEFRELDWEEIAKLMRKPP 95 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS---GGGGCCGHHHHHHHSCSSE
T ss_pred CHHHHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEecC-HHHhccCHHHHHHhcCCCC
Confidence 3467899999999998888887665444333 356655 799999999999999984 3443333345667788999
Q ss_pred EEEEc
Q psy3240 127 ILINT 131 (274)
Q Consensus 127 ilINv 131 (274)
++||+
T Consensus 96 ~iiD~ 100 (106)
T PF03720_consen 96 VIIDG 100 (106)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 99998
No 258
>PRK11579 putative oxidoreductase; Provisional
Probab=96.66 E-value=0.022 Score=53.72 Aligned_cols=105 Identities=14% Similarity=0.180 Sum_probs=60.2
Q ss_pred CEEEEEccChHHHH-HHHHHcc-CCCeEEEEeCCCCChhHhhc-CCc-ccCHHHHhc--ccCEEEEcCCCCcccHHhccH
Q psy3240 43 STVGIVGCGRIGLS-VLEKLIP-YKVSKFLYTSRSKKPEADKR-GAE-HTNIDDLCK--QSDFIIITSALTPDTHHLINR 116 (274)
Q Consensus 43 ktVGIIGlG~IG~~-iA~~L~~-~G~~vv~~~~r~~~~~a~~~-g~~-~~sl~ell~--~aDvVil~lPlt~~T~~li~~ 116 (274)
.+|||||+|.||+. .+..++. -+++++.+.++......... +.. +.+++++++ +.|+|++++|....-. +-.
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~ell~~~~vD~V~I~tp~~~H~~--~~~ 82 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVKADWPTVTVVSEPQHLFNDPNIDLIVIPTPNDTHFP--LAK 82 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHHhhCCCCceeCCHHHHhcCCCCCEEEEcCCcHHHHH--HHH
Confidence 48999999999985 5666654 36776666655433222222 232 348999996 5799999999643322 222
Q ss_pred HHHhcCCCC-cEEEEcC-CCchhcHHHHHhhhhhhhhe
Q psy3240 117 ARLESMKPG-AILINTS-RGQLVDQEALIDFIADIRVI 152 (274)
Q Consensus 117 ~~l~~mk~g-ailINv~-RG~iVde~aL~~~L~~~~i~ 152 (274)
..++ .| .+++.=- --.+-+.++|++..++.|+.
T Consensus 83 ~al~---aGkhVl~EKPla~t~~ea~~l~~~a~~~g~~ 117 (346)
T PRK11579 83 AALE---AGKHVVVDKPFTVTLSQARELDALAKSAGRV 117 (346)
T ss_pred HHHH---CCCeEEEeCCCCCCHHHHHHHHHHHHHhCCE
Confidence 3333 23 2444411 12233445666655555543
No 259
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.64 E-value=0.014 Score=54.40 Aligned_cols=109 Identities=14% Similarity=0.211 Sum_probs=75.0
Q ss_pred CCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCccc-CHHHHhcccCEEEEcCCCCccc---HH----
Q psy3240 41 QNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHT-NIDDLCKQSDFIIITSALTPDT---HH---- 112 (274)
Q Consensus 41 ~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~-sl~ell~~aDvVil~lPlt~~T---~~---- 112 (274)
.|++++|||--.=-..++++|.+.|++++++.-... .....|+... +.+++++++|+|++-+|.+.+. +.
T Consensus 1 ~~~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~--~~~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~ 78 (296)
T PRK08306 1 TGKHIAVIGGDARQLELIRKLVELGAKVSLVGFDQL--DHGFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFSN 78 (296)
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHCCCEEEEEecccc--ccccCCceeeccHHHHhccCCEEEECCccccCCceeeccccc
Confidence 478999999998899999999999998766432111 1123466665 6788899999999998875332 11
Q ss_pred ---hccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehh
Q psy3240 113 ---LINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISM 156 (274)
Q Consensus 113 ---li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~ 156 (274)
-++.+.++.|+++.+++ +|.+..- +-+.++++|+..+|.
T Consensus 79 ~~~~~~~~~l~~l~~~~~v~-~G~~~~~----~~~~~~~~gi~~~~~ 120 (296)
T PRK08306 79 EKLVLTEELLELTPEHCTIF-SGIANPY----LKELAKETNRKLVEL 120 (296)
T ss_pred cCCcchHHHHHhcCCCCEEE-EecCCHH----HHHHHHHCCCeEEEE
Confidence 13578899999998544 4544332 224455778877663
No 260
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.63 E-value=0.0054 Score=57.78 Aligned_cols=102 Identities=11% Similarity=0.014 Sum_probs=73.2
Q ss_pred HHHHHHHHHccCCCeEEEEeCCCCCh-------h------------HhhcC-------------Cccc-C--HHHHhccc
Q psy3240 53 IGLSVLEKLIPYKVSKFLYTSRSKKP-------E------------ADKRG-------------AEHT-N--IDDLCKQS 97 (274)
Q Consensus 53 IG~~iA~~L~~~G~~vv~~~~r~~~~-------~------------a~~~g-------------~~~~-s--l~ell~~a 97 (274)
||..+|..+...|++|++|+...... + ....| +... + +.+.+++|
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 78999999999999999998766310 0 01111 1122 2 55788999
Q ss_pred CEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhh----hhhhheeehh
Q psy3240 98 DFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFI----ADIRVISISM 156 (274)
Q Consensus 98 DvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L----~~~~i~~~D~ 156 (274)
|+|+-++|...+.+..+-.+..+.++++++|. +..+.+....|.+.+ +-.|++|.+.
T Consensus 81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~ila--SntS~~~~~~la~~~~~p~r~~g~Hf~~P 141 (314)
T PRK08269 81 DLVFEAVPEVLDAKREALRWLGRHVDADAIIA--STTSTFLVTDLQRHVAHPERFLNAHWLNP 141 (314)
T ss_pred CEEEECCcCCHHHHHHHHHHHHhhCCCCcEEE--EccccCCHHHHHhhcCCcccEEEEecCCc
Confidence 99999999999999888777888899999994 444446667777766 4456777763
No 261
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.60 E-value=0.0052 Score=58.56 Aligned_cols=81 Identities=27% Similarity=0.324 Sum_probs=54.2
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHccCCCe-EEEEeCCCC---------------------Chh-H----hh--cCCc--
Q psy3240 38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVS-KFLYTSRSK---------------------KPE-A----DK--RGAE-- 86 (274)
Q Consensus 38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~-vv~~~~r~~---------------------~~~-a----~~--~g~~-- 86 (274)
..|++++|.|||+|.+|..+|+.|...|.. ..++|+..- +.. + .+ .++.
T Consensus 20 ~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~ 99 (338)
T PRK12475 20 RKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIV 99 (338)
T ss_pred HhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEE
Confidence 469999999999999999999999999974 444555421 111 0 00 1111
Q ss_pred -------ccCHHHHhcccCEEEEcCCCCcccHHhccHHHH
Q psy3240 87 -------HTNIDDLCKQSDFIIITSALTPDTHHLINRARL 119 (274)
Q Consensus 87 -------~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l 119 (274)
..+++++++++|+|+.++- +.+++.+++.-..
T Consensus 100 ~~~~~~~~~~~~~~~~~~DlVid~~D-~~~~r~~in~~~~ 138 (338)
T PRK12475 100 PVVTDVTVEELEELVKEVDLIIDATD-NFDTRLLINDLSQ 138 (338)
T ss_pred EEeccCCHHHHHHHhcCCCEEEEcCC-CHHHHHHHHHHHH
Confidence 0135677888898888874 5667777765443
No 262
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=96.59 E-value=0.012 Score=55.49 Aligned_cols=93 Identities=23% Similarity=0.290 Sum_probs=57.6
Q ss_pred CCCCEEEEEccChHHHHHHHHHccCCC--eEEEEeCCCCChh--Hhh--c------CCcc-cCHHHHhcccCEEEEcCCC
Q psy3240 40 LQNSTVGIVGCGRIGLSVLEKLIPYKV--SKFLYTSRSKKPE--ADK--R------GAEH-TNIDDLCKQSDFIIITSAL 106 (274)
Q Consensus 40 L~gktVGIIGlG~IG~~iA~~L~~~G~--~vv~~~~r~~~~~--a~~--~------g~~~-~sl~ell~~aDvVil~lPl 106 (274)
=++++|+|||.|.+|..+|-.|...|. +.+.+|....... +.+ . .... .+..+.+++||+|+++.-.
T Consensus 4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag~ 83 (315)
T PRK00066 4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAGA 83 (315)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecCC
Confidence 357899999999999999999987776 5667776544332 111 1 1111 1233568999999997643
Q ss_pred Cc---ccHH-hc--cH-------HHHhcCCCCcEEEEcC
Q psy3240 107 TP---DTHH-LI--NR-------ARLESMKPGAILINTS 132 (274)
Q Consensus 107 t~---~T~~-li--~~-------~~l~~mk~gailINv~ 132 (274)
.. .++. ++ |. +.+..-.|.+++|+++
T Consensus 84 ~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvs 122 (315)
T PRK00066 84 PQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVAS 122 (315)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 21 1221 11 11 2233334789999998
No 263
>KOG0023|consensus
Probab=96.59 E-value=0.0047 Score=58.55 Aligned_cols=89 Identities=24% Similarity=0.253 Sum_probs=63.1
Q ss_pred CCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh--HhhcCCccc--C------HHHHhcccCEEEEcCCCCccc
Q psy3240 41 QNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--ADKRGAEHT--N------IDDLCKQSDFIIITSALTPDT 110 (274)
Q Consensus 41 ~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a~~~g~~~~--s------l~ell~~aDvVil~lPlt~~T 110 (274)
.|+.+||+|+|-+|.--.+..+++|+++++.+....+.+ ...+|++.. + .+++...-|.++-+++.- .
T Consensus 181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~~v~~~--a 258 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIMKTTDGGIDTVSNL--A 258 (360)
T ss_pred CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHHHhhcCcceeeeec--c
Confidence 899999999999999999999999998888877664444 455777531 1 234566677777777632 2
Q ss_pred HHhccHHHHhcCCCCcEEEEcC
Q psy3240 111 HHLINRARLESMKPGAILINTS 132 (274)
Q Consensus 111 ~~li~~~~l~~mk~gailINv~ 132 (274)
.+-+ +..+..||++..+|-++
T Consensus 259 ~~~~-~~~~~~lk~~Gt~V~vg 279 (360)
T KOG0023|consen 259 EHAL-EPLLGLLKVNGTLVLVG 279 (360)
T ss_pred ccch-HHHHHHhhcCCEEEEEe
Confidence 2222 24566778777777665
No 264
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.59 E-value=0.01 Score=55.64 Aligned_cols=90 Identities=23% Similarity=0.286 Sum_probs=55.9
Q ss_pred CEEEEEccChHHHHHHHHHccCC--CeEEEEeCCCCChh--Hhh-cCCc--------ccCHHHHhcccCEEEEcCCCCcc
Q psy3240 43 STVGIVGCGRIGLSVLEKLIPYK--VSKFLYTSRSKKPE--ADK-RGAE--------HTNIDDLCKQSDFIIITSALTPD 109 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~~L~~~G--~~vv~~~~r~~~~~--a~~-~g~~--------~~sl~ell~~aDvVil~lPlt~~ 109 (274)
++|+|||.|.+|..+|..|...| .+++++|.+..... +.. .... ..+-.+.++.||+|+++++....
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~l~~aDiViita~~~~~ 80 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYADCKGADVVVITAGANQK 80 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHHHhCCCCEEEEccCCCCC
Confidence 47999999999999999998878 45677776554322 111 1111 11223568999999999986321
Q ss_pred ---cHH--------hcc--HHHHhcCCCCcEEEEcC
Q psy3240 110 ---THH--------LIN--RARLESMKPGAILINTS 132 (274)
Q Consensus 110 ---T~~--------li~--~~~l~~mk~gailINv~ 132 (274)
++- ++. .+.+....+.+++++++
T Consensus 81 ~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~t 116 (308)
T cd05292 81 PGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVT 116 (308)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 221 121 12233445778888885
No 265
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.55 E-value=0.0059 Score=51.89 Aligned_cols=68 Identities=18% Similarity=0.143 Sum_probs=46.8
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcC-Cccc--CH-HHHhcccCEEEEcCCC
Q psy3240 38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRG-AEHT--NI-DDLCKQSDFIIITSAL 106 (274)
Q Consensus 38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g-~~~~--sl-~ell~~aDvVil~lPl 106 (274)
-+|+|++|.|||.|.+|...++.|...|++++++++.. ..+..+.+ +... .+ ++-+..+|+|+.++..
T Consensus 9 l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~~-~~~l~~l~~i~~~~~~~~~~dl~~a~lViaaT~d 80 (157)
T PRK06719 9 FNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPEI-CKEMKELPYITWKQKTFSNDDIKDAHLIYAATNQ 80 (157)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCcc-CHHHHhccCcEEEecccChhcCCCceEEEECCCC
Confidence 58999999999999999999999999999877775332 22222222 1111 22 2236778888887654
No 266
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=96.51 E-value=0.011 Score=55.15 Aligned_cols=89 Identities=18% Similarity=0.228 Sum_probs=62.4
Q ss_pred CCCCEEEEEccChHHHHHHHHHccCCCe-EEEEeCCCCChh-HhhcCCccc------CHHHHhc---ccCEEEEcCCCCc
Q psy3240 40 LQNSTVGIVGCGRIGLSVLEKLIPYKVS-KFLYTSRSKKPE-ADKRGAEHT------NIDDLCK---QSDFIIITSALTP 108 (274)
Q Consensus 40 L~gktVGIIGlG~IG~~iA~~L~~~G~~-vv~~~~r~~~~~-a~~~g~~~~------sl~ell~---~aDvVil~lPlt~ 108 (274)
..|++|.|+|.|.+|...++.++..|++ +++.+.+..+.+ +++.|+... ++.+... ..|+|+-++...
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~~- 246 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGHP- 246 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCCH-
Confidence 4689999999999999999999999985 445554444444 667777532 3344332 279999887532
Q ss_pred ccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240 109 DTHHLINRARLESMKPGAILINTSR 133 (274)
Q Consensus 109 ~T~~li~~~~l~~mk~gailINv~R 133 (274)
. .+ ...++.++++..++.++.
T Consensus 247 ~---~~-~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 247 S---SI-NTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred H---HH-HHHHHHhhcCCEEEEEcc
Confidence 1 12 356677899999999875
No 267
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=96.48 E-value=0.013 Score=55.34 Aligned_cols=64 Identities=20% Similarity=0.349 Sum_probs=44.2
Q ss_pred CCCCEEEEEccChHHHHHHHHHccCCC-eEEEEeCCCCChh--Hh----h---cCC----cc-cCHHHHhcccCEEEEcC
Q psy3240 40 LQNSTVGIVGCGRIGLSVLEKLIPYKV-SKFLYTSRSKKPE--AD----K---RGA----EH-TNIDDLCKQSDFIIITS 104 (274)
Q Consensus 40 L~gktVGIIGlG~IG~~iA~~L~~~G~-~vv~~~~r~~~~~--a~----~---~g~----~~-~sl~ell~~aDvVil~l 104 (274)
++.+||+|||.|.||..+|..+...|. +++++|....... +. . .+. .. .+. +.++.||+|+++.
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~ta 82 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTA 82 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECC
Confidence 455899999999999999999877774 6677776554321 11 0 111 11 255 5779999999977
No 268
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.47 E-value=0.0091 Score=57.91 Aligned_cols=67 Identities=15% Similarity=0.142 Sum_probs=45.1
Q ss_pred CCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhH-hhcCCc-ccCHHHHhcccCEEEEcCCCCc
Q psy3240 42 NSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEA-DKRGAE-HTNIDDLCKQSDFIIITSALTP 108 (274)
Q Consensus 42 gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a-~~~g~~-~~sl~ell~~aDvVil~lPlt~ 108 (274)
.++|.|||+|.+|.++|+.|+..|.+++++|++...... ....-. ....+....++|+|+.+.+..+
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~~ 71 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIKK 71 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCCC
Confidence 478999999999999999999999977777755432211 000001 1133344577999988876554
No 269
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=96.47 E-value=0.021 Score=48.48 Aligned_cols=98 Identities=23% Similarity=0.375 Sum_probs=67.0
Q ss_pred CCCEEEEEc--cChHHHHHHHHHccCCCeEEEEeCCCC--Ch--h--------HhhcCC--cc-cCHHHHhcccCEEEEc
Q psy3240 41 QNSTVGIVG--CGRIGLSVLEKLIPYKVSKFLYTSRSK--KP--E--------ADKRGA--EH-TNIDDLCKQSDFIIIT 103 (274)
Q Consensus 41 ~gktVGIIG--lG~IG~~iA~~L~~~G~~vv~~~~r~~--~~--~--------a~~~g~--~~-~sl~ell~~aDvVil~ 103 (274)
.|++|++|| -+++..+++..+..||+.+.+..+..- .. . +...|. .. .+++|.++++|+|..-
T Consensus 1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~aDvvy~~ 80 (158)
T PF00185_consen 1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKGADVVYTD 80 (158)
T ss_dssp TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT-SEEEEE
T ss_pred CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCCCCEEEEc
Confidence 489999999 389999999999999997555555441 12 1 112233 22 3899999999999886
Q ss_pred CCCC----cc-------cHHhccHHHHhcCCCCcEEEEcC---CCchhc
Q psy3240 104 SALT----PD-------THHLINRARLESMKPGAILINTS---RGQLVD 138 (274)
Q Consensus 104 lPlt----~~-------T~~li~~~~l~~mk~gailINv~---RG~iVd 138 (274)
.--+ +. ....++++.++.+|++++|.-+. ||.=|+
T Consensus 81 ~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~LP~~R~~Ev~ 129 (158)
T PF00185_consen 81 RWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPLPANRGEEVS 129 (158)
T ss_dssp SSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESSS--BTTSBE
T ss_pred CcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCCCCCCCceeC
Confidence 5541 11 01346889999999999999985 454333
No 270
>PRK06223 malate dehydrogenase; Reviewed
Probab=96.47 E-value=0.014 Score=54.26 Aligned_cols=62 Identities=21% Similarity=0.369 Sum_probs=42.7
Q ss_pred CEEEEEccChHHHHHHHHHccCCC-eEEEEeCCCCChh--Hhh---c----CC--c--c-cCHHHHhcccCEEEEcCC
Q psy3240 43 STVGIVGCGRIGLSVLEKLIPYKV-SKFLYTSRSKKPE--ADK---R----GA--E--H-TNIDDLCKQSDFIIITSA 105 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~~L~~~G~-~vv~~~~r~~~~~--a~~---~----g~--~--~-~sl~ell~~aDvVil~lP 105 (274)
++|+|||.|.||..+|..+...|. +++++|....... ..+ . +. . . .+. +.++.||+|++++.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~~ 79 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITAG 79 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECCC
Confidence 689999999999999999987654 7788886544322 110 1 11 1 1 144 45799999999863
No 271
>PRK06270 homoserine dehydrogenase; Provisional
Probab=96.46 E-value=0.016 Score=55.17 Aligned_cols=111 Identities=14% Similarity=0.224 Sum_probs=61.9
Q ss_pred CEEEEEccChHHHHHHHHHccC----------CCeEEEEeCCCC--------Chh-----HhhcCC--------cccCHH
Q psy3240 43 STVGIVGCGRIGLSVLEKLIPY----------KVSKFLYTSRSK--------KPE-----ADKRGA--------EHTNID 91 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~~L~~~----------G~~vv~~~~r~~--------~~~-----a~~~g~--------~~~sl~ 91 (274)
.+|+|+|+|.||+.+++.+... +++++...++.. ... ....+. ...+++
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL 82 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence 4799999999999999998644 565555444321 111 111121 012778
Q ss_pred HHhc--ccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchh-cHHHHHhhhhhhhhee
Q psy3240 92 DLCK--QSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLV-DQEALIDFIADIRVIS 153 (274)
Q Consensus 92 ell~--~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iV-de~aL~~~L~~~~i~~ 153 (274)
+++. ..|+|+.++|....+...--.-....|+.|.-+|-..-+.+. ..++|.+..++.|+.+
T Consensus 83 ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~~ 147 (341)
T PRK06270 83 EVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVRF 147 (341)
T ss_pred HHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCEE
Confidence 8874 689999999975443111111123334556555544332322 3456666555555544
No 272
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=96.46 E-value=0.011 Score=56.23 Aligned_cols=90 Identities=23% Similarity=0.276 Sum_probs=55.1
Q ss_pred CEEEEEcc-ChHHHHHHHHHccC-CCeEEEEeCCCCChh--HhhcC-C------cccCHHH-HhcccCEEEEcCCCCccc
Q psy3240 43 STVGIVGC-GRIGLSVLEKLIPY-KVSKFLYTSRSKKPE--ADKRG-A------EHTNIDD-LCKQSDFIIITSALTPDT 110 (274)
Q Consensus 43 ktVGIIGl-G~IG~~iA~~L~~~-G~~vv~~~~r~~~~~--a~~~g-~------~~~sl~e-ll~~aDvVil~lPlt~~T 110 (274)
++|+|+|. |.+|+.+++.|... +++.+.+.++..... ....+ . .+.++++ ...++|+|++|+|... .
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~~-~ 81 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHGV-S 81 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcHH-H
Confidence 68999996 99999999999876 565555444432221 11111 1 1223333 4578999999999632 2
Q ss_pred HHhccHHHHhcCCCCcEEEEcCCCchh
Q psy3240 111 HHLINRARLESMKPGAILINTSRGQLV 137 (274)
Q Consensus 111 ~~li~~~~l~~mk~gailINv~RG~iV 137 (274)
..++ .+. ++.|..+||.|..=-.
T Consensus 82 ~~~v-~~a---~~aG~~VID~S~~fR~ 104 (343)
T PRK00436 82 MDLA-PQL---LEAGVKVIDLSADFRL 104 (343)
T ss_pred HHHH-HHH---HhCCCEEEECCcccCC
Confidence 2222 112 3578999999843334
No 273
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.45 E-value=0.035 Score=53.98 Aligned_cols=112 Identities=15% Similarity=0.237 Sum_probs=71.6
Q ss_pred CCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh------HhhcCCccc---CHHHHhcccCEEEEcCCCCcc
Q psy3240 39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE------ADKRGAEHT---NIDDLCKQSDFIIITSALTPD 109 (274)
Q Consensus 39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~------a~~~g~~~~---sl~ell~~aDvVil~lPlt~~ 109 (274)
++++|++.|+|.|.+|.++|+.|...|+++++++....... ....++... ..++....+|+|+.+.-..+.
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~~~~ 81 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPGVPLD 81 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCCCCCC
Confidence 57899999999999999999999999998887776532211 122344321 234566789999997655444
Q ss_pred cHHhccH-----------HHHhc-CCCCcEEEEcCCCchhcHHHHHhhhhhhh
Q psy3240 110 THHLINR-----------ARLES-MKPGAILINTSRGQLVDQEALIDFIADIR 150 (274)
Q Consensus 110 T~~li~~-----------~~l~~-mk~gailINv~RG~iVde~aL~~~L~~~~ 150 (274)
..-+.-. +.+.. .+...+-|--+.|+.--.+-|...|+..|
T Consensus 82 ~~~~~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~~g 134 (450)
T PRK14106 82 SPPVVQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKNAG 134 (450)
T ss_pred CHHHHHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHHcC
Confidence 4322211 11222 23223334445688877777777777654
No 274
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=96.44 E-value=0.016 Score=55.30 Aligned_cols=65 Identities=22% Similarity=0.295 Sum_probs=44.6
Q ss_pred CEEEEEccChHHHHHHHHHcc-CCCeEEEEeCCCCChh---HhhcC------------------Ccc-cCHHHHhcccCE
Q psy3240 43 STVGIVGCGRIGLSVLEKLIP-YKVSKFLYTSRSKKPE---ADKRG------------------AEH-TNIDDLCKQSDF 99 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~~L~~-~G~~vv~~~~r~~~~~---a~~~g------------------~~~-~sl~ell~~aDv 99 (274)
.+|||+|+|.||+.+++.+.. -++++++..++..... +...| +.. .++++++..+|+
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vDV 81 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKADI 81 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCCE
Confidence 479999999999999998875 4677666665432111 11111 112 257788888999
Q ss_pred EEEcCCCC
Q psy3240 100 IIITSALT 107 (274)
Q Consensus 100 Vil~lPlt 107 (274)
|+.|.|..
T Consensus 82 VIdaT~~~ 89 (341)
T PRK04207 82 VVDATPGG 89 (341)
T ss_pred EEECCCch
Confidence 99998853
No 275
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=96.38 E-value=0.028 Score=53.79 Aligned_cols=64 Identities=14% Similarity=0.180 Sum_probs=48.4
Q ss_pred CCEEEEEccChHHHHHHHHHccC--CCeEEEEeCCCCChh---HhhcCCc-ccCHHHHhcccCEEEEcCCC
Q psy3240 42 NSTVGIVGCGRIGLSVLEKLIPY--KVSKFLYTSRSKKPE---ADKRGAE-HTNIDDLCKQSDFIIITSAL 106 (274)
Q Consensus 42 gktVGIIGlG~IG~~iA~~L~~~--G~~vv~~~~r~~~~~---a~~~g~~-~~sl~ell~~aDvVil~lPl 106 (274)
-.+|||||. .+|+.-++.++.. +++.++..++..+.. +.+.|+. +.+++|++++.|++++++|.
T Consensus 3 ~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt 72 (343)
T TIGR01761 3 VQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRS 72 (343)
T ss_pred CcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCC
Confidence 368999999 6899999888765 476666665554332 5566765 35999999999999999985
No 276
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.38 E-value=0.011 Score=57.18 Aligned_cols=87 Identities=11% Similarity=0.197 Sum_probs=55.6
Q ss_pred CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-Hhh-cCCcc--------cCHHHH-hcccCEEEEcCCCCcccH
Q psy3240 43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADK-RGAEH--------TNIDDL-CKQSDFIIITSALTPDTH 111 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~-~g~~~--------~sl~el-l~~aDvVil~lPlt~~T~ 111 (274)
++|.|+|+|.+|+.+|+.|...|.++++++.+..... ..+ .++.. ..++++ +..+|.|+++++....+.
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~~n~ 80 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDETNM 80 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChHHHH
Confidence 4799999999999999999999998877776544333 222 33321 134555 788999999998644332
Q ss_pred HhccHHHHhcC-CCCcEEEEc
Q psy3240 112 HLINRARLESM-KPGAILINT 131 (274)
Q Consensus 112 ~li~~~~l~~m-k~gailINv 131 (274)
+-......+ +...+++-+
T Consensus 81 --~~~~~~r~~~~~~~ii~~~ 99 (453)
T PRK09496 81 --VACQIAKSLFGAPTTIARV 99 (453)
T ss_pred --HHHHHHHHhcCCCeEEEEE
Confidence 222333344 444455444
No 277
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=96.38 E-value=0.0083 Score=57.72 Aligned_cols=61 Identities=20% Similarity=0.304 Sum_probs=47.3
Q ss_pred CCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHh-hc-CC--cc---cCHHHHhcccCEEEE
Q psy3240 42 NSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEAD-KR-GA--EH---TNIDDLCKQSDFIII 102 (274)
Q Consensus 42 gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~-~~-g~--~~---~sl~ell~~aDvVil 102 (274)
+++|||||-|..|+.|+...+.+|.++++.++....+... .. .+ .+ ..+.++++.||+|..
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~ 68 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITY 68 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEE
Confidence 4799999999999999999999999988888776655411 11 11 11 147889999999976
No 278
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=96.37 E-value=0.011 Score=52.79 Aligned_cols=88 Identities=18% Similarity=0.248 Sum_probs=62.3
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh----HhhcCCcc----cCHHHHhcccCEEEEcCCCCcc
Q psy3240 38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE----ADKRGAEH----TNIDDLCKQSDFIIITSALTPD 109 (274)
Q Consensus 38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~----a~~~g~~~----~sl~ell~~aDvVil~lPlt~~ 109 (274)
-+|.||+|.|||-|..|..=|+.|...|++++++.+.. .++ ....++.. .+.+++. .+++|+.+++..+
T Consensus 8 ~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~-~~el~~~~~~~~i~~~~~~~~~~~~~-~~~lviaAt~d~~- 84 (210)
T COG1648 8 LDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEF-EPELKALIEEGKIKWIEREFDAEDLD-DAFLVIAATDDEE- 84 (210)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCc-cHHHHHHHHhcCcchhhcccChhhhc-CceEEEEeCCCHH-
Confidence 47999999999999999999999999999888887766 333 22223222 1334443 4999999887533
Q ss_pred cHHhccHHHHhcCCCCcEEEEcC
Q psy3240 110 THHLINRARLESMKPGAILINTS 132 (274)
Q Consensus 110 T~~li~~~~l~~mk~gailINv~ 132 (274)
+|++.+..+++-.+++|+.
T Consensus 85 ----ln~~i~~~a~~~~i~vNv~ 103 (210)
T COG1648 85 ----LNERIAKAARERRILVNVV 103 (210)
T ss_pred ----HHHHHHHHHHHhCCceecc
Confidence 4555566666666778874
No 279
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=96.37 E-value=0.014 Score=53.11 Aligned_cols=94 Identities=22% Similarity=0.304 Sum_probs=58.1
Q ss_pred EEEEcc-ChHHHHHHHHHccCC----CeEEEEeCCCCChh--Hh-------hc-CCc--cc-CHHHHhcccCEEEEcCCC
Q psy3240 45 VGIVGC-GRIGLSVLEKLIPYK----VSKFLYTSRSKKPE--AD-------KR-GAE--HT-NIDDLCKQSDFIIITSAL 106 (274)
Q Consensus 45 VGIIGl-G~IG~~iA~~L~~~G----~~vv~~~~r~~~~~--a~-------~~-g~~--~~-sl~ell~~aDvVil~lPl 106 (274)
|+|||. |.+|..+|..|...| .+++.||....+.. .. .. ... .. ++.+.+++||+|+++.-.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~ 80 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV 80 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence 589999 999999999987767 56777876554322 11 11 111 12 567899999999996532
Q ss_pred Cc---ccH--------Hhcc--HHHHhcCCCCcEEEEcCCCchhcHH
Q psy3240 107 TP---DTH--------HLIN--RARLESMKPGAILINTSRGQLVDQE 140 (274)
Q Consensus 107 t~---~T~--------~li~--~~~l~~mk~gailINv~RG~iVde~ 140 (274)
.. .++ .++. .+.+.+..|.+++||.+ .++|.-
T Consensus 81 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~t--NP~d~~ 125 (263)
T cd00650 81 GRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVS--NPVDII 125 (263)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec--CcHHHH
Confidence 11 111 1121 12344456899999995 445443
No 280
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=96.34 E-value=0.011 Score=57.34 Aligned_cols=95 Identities=12% Similarity=0.079 Sum_probs=59.2
Q ss_pred CCCCEEEEEcc-ChHHHHHHHHHccC-CCeEEEEeCCCCChh-HhhcC-------Cc-ccCHHH-HhcccCEEEEcCCCC
Q psy3240 40 LQNSTVGIVGC-GRIGLSVLEKLIPY-KVSKFLYTSRSKKPE-ADKRG-------AE-HTNIDD-LCKQSDFIIITSALT 107 (274)
Q Consensus 40 L~gktVGIIGl-G~IG~~iA~~L~~~-G~~vv~~~~r~~~~~-a~~~g-------~~-~~sl~e-ll~~aDvVil~lPlt 107 (274)
-..++|+|+|. |.+|+.+.+.|... ++++..+.++..... ..... .. ..++++ .++++|+|++++|..
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~~ 115 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHG 115 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCHH
Confidence 45569999996 99999999999876 565555544322211 11101 11 112222 258899999999963
Q ss_pred cccHHhccHHHHhcCCCCcEEEEcCCCchhcHH
Q psy3240 108 PDTHHLINRARLESMKPGAILINTSRGQLVDQE 140 (274)
Q Consensus 108 ~~T~~li~~~~l~~mk~gailINv~RG~iVde~ 140 (274)
.. .+..+.|+.|..+||.|..-..+.+
T Consensus 116 -~s-----~~i~~~~~~g~~VIDlSs~fRl~~~ 142 (381)
T PLN02968 116 -TT-----QEIIKALPKDLKIVDLSADFRLRDI 142 (381)
T ss_pred -HH-----HHHHHHHhCCCEEEEcCchhccCCc
Confidence 33 3444445678999999965555444
No 281
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.31 E-value=0.045 Score=53.18 Aligned_cols=113 Identities=12% Similarity=0.124 Sum_probs=69.7
Q ss_pred CCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCCh----h-HhhcCCccc---CHHHHhcc-cCEEEEcCCCCcc
Q psy3240 39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKP----E-ADKRGAEHT---NIDDLCKQ-SDFIIITSALTPD 109 (274)
Q Consensus 39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~----~-a~~~g~~~~---sl~ell~~-aDvVil~lPlt~~ 109 (274)
++.||++.|+|.|.+|.++|+.|+..|+++++.+...... . ....|+... ...+++.. .|+|+..--..+.
T Consensus 2 ~~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~gi~~~ 81 (447)
T PRK02472 2 EYQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNPGIPYT 81 (447)
T ss_pred CcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECCCCCCC
Confidence 4789999999999999999999999999877776543221 1 223455432 23444554 8988875522222
Q ss_pred cH----------HhccH-HHHhcC-CCCcEEEEcCCCchhcHHHHHhhhhhhhh
Q psy3240 110 TH----------HLINR-ARLESM-KPGAILINTSRGQLVDQEALIDFIADIRV 151 (274)
Q Consensus 110 T~----------~li~~-~~l~~m-k~gailINv~RG~iVde~aL~~~L~~~~i 151 (274)
.. .++.. +.+..+ +...+-|--+.|+.--..-+...|+..|.
T Consensus 82 ~~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~~g~ 135 (447)
T PRK02472 82 NPMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKAGGQ 135 (447)
T ss_pred CHHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHHCCC
Confidence 11 12222 222233 33344555567888877777777876553
No 282
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=96.30 E-value=0.0088 Score=53.52 Aligned_cols=36 Identities=33% Similarity=0.447 Sum_probs=30.7
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHccCCCeEE-EEeC
Q psy3240 38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKF-LYTS 73 (274)
Q Consensus 38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv-~~~~ 73 (274)
..|.+++|.|+|+|.+|..+|+.|...|...+ ++|+
T Consensus 17 ~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~ 53 (228)
T cd00757 17 EKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDD 53 (228)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 47999999999999999999999999998554 4443
No 283
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=96.29 E-value=0.015 Score=54.45 Aligned_cols=89 Identities=22% Similarity=0.347 Sum_probs=61.3
Q ss_pred CCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCC---CCChh-HhhcCCcccC-----HHH--HhcccCEEEEcCCCCc
Q psy3240 40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSR---SKKPE-ADKRGAEHTN-----IDD--LCKQSDFIIITSALTP 108 (274)
Q Consensus 40 L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r---~~~~~-a~~~g~~~~s-----l~e--ll~~aDvVil~lPlt~ 108 (274)
..|++|.|+|.|.+|...++.++..|+++++.+++ ..+.+ +++.|+...+ +.+ .....|+|+-++....
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~~ 250 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEATGVPP 250 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECcCCHH
Confidence 36899999999999999999999999976666542 22222 5566765431 111 2235799999886321
Q ss_pred ccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240 109 DTHHLINRARLESMKPGAILINTSR 133 (274)
Q Consensus 109 ~T~~li~~~~l~~mk~gailINv~R 133 (274)
.+ .+.++.++++..++.++.
T Consensus 251 ----~~-~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 251 ----LA-FEALPALAPNGVVILFGV 270 (355)
T ss_pred ----HH-HHHHHHccCCcEEEEEec
Confidence 22 356778899998888774
No 284
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.27 E-value=0.006 Score=54.76 Aligned_cols=66 Identities=17% Similarity=0.233 Sum_probs=48.1
Q ss_pred CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhH-hh--cCCcc--------cCHHHH-hcccCEEEEcCCCCc
Q psy3240 43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEA-DK--RGAEH--------TNIDDL-CKQSDFIIITSALTP 108 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a-~~--~g~~~--------~sl~el-l~~aDvVil~lPlt~ 108 (274)
+++.|+|+|.+|..+|+.|...|..+++.+........ .. .+... ..|.++ +.++|+++.++..+.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d~ 78 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGNDE 78 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCCH
Confidence 57999999999999999999999988888766554331 12 32221 135555 788999999887543
No 285
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=96.23 E-value=0.027 Score=53.03 Aligned_cols=98 Identities=18% Similarity=0.283 Sum_probs=62.1
Q ss_pred CCEEEEEccChHHHHHHHHHcc-CCCeEEEEeCCCCC-h--h-HhhcCCcc--cCHHHHhc-----ccCEEEEcCCCCcc
Q psy3240 42 NSTVGIVGCGRIGLSVLEKLIP-YKVSKFLYTSRSKK-P--E-ADKRGAEH--TNIDDLCK-----QSDFIIITSALTPD 109 (274)
Q Consensus 42 gktVGIIGlG~IG~~iA~~L~~-~G~~vv~~~~r~~~-~--~-a~~~g~~~--~sl~ell~-----~aDvVil~lPlt~~ 109 (274)
..+|||||.|+||+..+..+.. -+++.+...++... . . +.+.|+.. .+.+++++ +.|+|+.++|....
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~~H 83 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAGAH 83 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHHHH
Confidence 4689999999999997777654 45655544443332 1 2 55677754 37888884 58899999885322
Q ss_pred cHHhccHHHHhcCCCCcEEEEcC---CCch----hcHHHHHh
Q psy3240 110 THHLINRARLESMKPGAILINTS---RGQL----VDQEALID 144 (274)
Q Consensus 110 T~~li~~~~l~~mk~gailINv~---RG~i----Vde~aL~~ 144 (274)
-+ -.....+.|..+|+-+ +|.+ |+.+++.+
T Consensus 84 ~e-----~a~~a~eaGk~VID~sPA~~~PlvVP~VN~~~~~~ 120 (302)
T PRK08300 84 VR-----HAAKLREAGIRAIDLTPAAIGPYCVPAVNLDEHLD 120 (302)
T ss_pred HH-----HHHHHHHcCCeEEECCccccCCcccCcCCHHHHhc
Confidence 11 1222246788888876 3444 45555543
No 286
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=96.18 E-value=0.012 Score=59.28 Aligned_cols=86 Identities=16% Similarity=0.263 Sum_probs=58.6
Q ss_pred CCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-----CH---HH-HhcccCEEEEcCCCCcccH
Q psy3240 42 NSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-----NI---DD-LCKQSDFIIITSALTPDTH 111 (274)
Q Consensus 42 gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-----sl---~e-ll~~aDvVil~lPlt~~T~ 111 (274)
..++.|+|+|++|+.+|+.|+..|.++++.|++..+.+ .++.|.... +. ++ -++++|.++++++...++.
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~ 496 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAG 496 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHH
Confidence 35789999999999999999999998888887665444 455555321 22 21 2468999999998766655
Q ss_pred HhccHHHHhcCCCCcEEE
Q psy3240 112 HLINRARLESMKPGAILI 129 (274)
Q Consensus 112 ~li~~~~l~~mk~gailI 129 (274)
.++-. ..++.+...+|
T Consensus 497 ~iv~~--~~~~~~~~~ii 512 (558)
T PRK10669 497 EIVAS--AREKRPDIEII 512 (558)
T ss_pred HHHHH--HHHHCCCCeEE
Confidence 55432 22334555554
No 287
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=96.17 E-value=0.028 Score=52.03 Aligned_cols=107 Identities=15% Similarity=0.204 Sum_probs=70.7
Q ss_pred CCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh---HhhcCCcccCHHHH-hcccCEEEEcCCCCcc--c---HH
Q psy3240 42 NSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE---ADKRGAEHTNIDDL-CKQSDFIIITSALTPD--T---HH 112 (274)
Q Consensus 42 gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~---a~~~g~~~~sl~el-l~~aDvVil~lPlt~~--T---~~ 112 (274)
++++.|+|.|-.+++++..|...|++.+...+|+.+.. +...+.... +++ ...+|+|+.++|..-. . .-
T Consensus 122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~~--~~~~~~~~dlvINaTp~Gm~~~~~~~~~ 199 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEWR--PDLGGIEADILVNVTPIGMAGGPEADKL 199 (272)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcch--hhcccccCCEEEECCccccCCCCccccC
Confidence 57999999999999999999999986555555554332 222332211 111 2458999999996421 1 11
Q ss_pred hccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeeh
Q psy3240 113 LINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISIS 155 (274)
Q Consensus 113 li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D 155 (274)
.++. +.++++.++.|+.-.. -+..|++.-+++|+..+|
T Consensus 200 pi~~---~~l~~~~~v~D~vY~P--~~T~ll~~A~~~G~~~i~ 237 (272)
T PRK12550 200 AFPE---AEIDAASVVFDVVALP--AETPLIRYARARGKTVIT 237 (272)
T ss_pred CCCH---HHcCCCCEEEEeecCC--ccCHHHHHHHHCcCeEeC
Confidence 2333 3367788999987654 356777777888887776
No 288
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=96.15 E-value=0.018 Score=52.59 Aligned_cols=100 Identities=15% Similarity=0.248 Sum_probs=69.7
Q ss_pred CCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhccHHHHhc
Q psy3240 42 NSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLES 121 (274)
Q Consensus 42 gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~ 121 (274)
-.++-|+|.|.+++++|+.++.+|++++++|+|..... .+.+..++.+....| .+.+..
T Consensus 100 ~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~~~~-----------~~~~~~~~~~~~~~~----------~~~~~~ 158 (246)
T TIGR02964 100 APHVVLFGAGHVGRALVRALAPLPCRVTWVDSREAEFP-----------EDLPDGVATLVTDEP----------EAEVAE 158 (246)
T ss_pred CCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCccccc-----------ccCCCCceEEecCCH----------HHHHhc
Confidence 36899999999999999999999999999988754110 001123333322111 123334
Q ss_pred CCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhccccc
Q psy3240 122 MKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKH 162 (274)
Q Consensus 122 mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~ 162 (274)
+.+++.+|=+.++--.|.++|...|++....||.+....++
T Consensus 159 ~~~~t~vvi~th~h~~D~~~L~~aL~~~~~~YIG~lGSr~k 199 (246)
T TIGR02964 159 APPGSYFLVLTHDHALDLELCHAALRRGDFAYFGLIGSKTK 199 (246)
T ss_pred CCCCcEEEEEeCChHHHHHHHHHHHhCCCCcEEEEeCCHHH
Confidence 56778888888999899999999887666777777776544
No 289
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=96.14 E-value=0.018 Score=51.33 Aligned_cols=37 Identities=27% Similarity=0.350 Sum_probs=31.0
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHccCCCe-EEEEeCC
Q psy3240 38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVS-KFLYTSR 74 (274)
Q Consensus 38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~-vv~~~~r 74 (274)
..|+.++|+|||+|.+|..+|+.|...|.. .+++|..
T Consensus 24 ~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 24 EKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred HHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 468999999999999999999999988885 4455544
No 290
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=96.11 E-value=0.019 Score=52.21 Aligned_cols=89 Identities=22% Similarity=0.260 Sum_probs=58.7
Q ss_pred CCCCEEEEEccChHHHHHHHHHccCCCe-EEEEeCCCCChh-HhhcCCccc-C---HHHHh------cccCEEEEcCCCC
Q psy3240 40 LQNSTVGIVGCGRIGLSVLEKLIPYKVS-KFLYTSRSKKPE-ADKRGAEHT-N---IDDLC------KQSDFIIITSALT 107 (274)
Q Consensus 40 L~gktVGIIGlG~IG~~iA~~L~~~G~~-vv~~~~r~~~~~-a~~~g~~~~-s---l~ell------~~aDvVil~lPlt 107 (274)
..|++|.|+|.|.+|..+++.++.+|++ +++.+.+..+.+ +++.|+... + ..+.+ ...|+++-++...
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~G~~ 198 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFSGAT 198 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECCCCh
Confidence 3689999999999999999999999996 444433333333 566676432 2 11211 2478888876532
Q ss_pred cccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240 108 PDTHHLINRARLESMKPGAILINTSR 133 (274)
Q Consensus 108 ~~T~~li~~~~l~~mk~gailINv~R 133 (274)
. .+ ...++.++++..++.++.
T Consensus 199 ~----~~-~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 199 A----AV-RACLESLDVGGTAVLAGS 219 (280)
T ss_pred H----HH-HHHHHHhcCCCEEEEecc
Confidence 2 12 245677888888888874
No 291
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=96.10 E-value=0.015 Score=45.10 Aligned_cols=73 Identities=21% Similarity=0.266 Sum_probs=45.4
Q ss_pred CCEEEEEccChHHHHHHHHHc-cCCCe-EEEEeCCCCChhHhhcCCccc-CHHHHhcc--cCEEEEcCCCCcccHHhcc
Q psy3240 42 NSTVGIVGCGRIGLSVLEKLI-PYKVS-KFLYTSRSKKPEADKRGAEHT-NIDDLCKQ--SDFIIITSALTPDTHHLIN 115 (274)
Q Consensus 42 gktVGIIGlG~IG~~iA~~L~-~~G~~-vv~~~~r~~~~~a~~~g~~~~-sl~ell~~--aDvVil~lPlt~~T~~li~ 115 (274)
..++.|+|+|++|++++..+. ..|++ +.+++..+.+....-.|+... +++++.+. .|+-++++|.. .....++
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i~gipV~~~~~~l~~~~~i~iaii~VP~~-~a~~~~~ 80 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEIGGIPVYGSMDELEEFIEIDIAIITVPAE-AAQEVAD 80 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEETTEEEESSHHHHHHHCTTSEEEEES-HH-HHHHHHH
T ss_pred CCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEECCEEeeccHHHhhhhhCCCEEEEEcCHH-HHHHHHH
Confidence 457999999999999985543 34443 344454443322222355544 78887776 99999999953 3444443
No 292
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.08 E-value=0.04 Score=53.93 Aligned_cols=113 Identities=14% Similarity=0.220 Sum_probs=68.9
Q ss_pred CCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCcccCH-HHHhcccCEEEEcC--CCC-c----c
Q psy3240 39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHTNI-DDLCKQSDFIIITS--ALT-P----D 109 (274)
Q Consensus 39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~sl-~ell~~aDvVil~l--Plt-~----~ 109 (274)
+++|++|.|+|+|..|.++|+.|+..|.++.++|....... ....|+..... .+-+..+|+|+..= |.+ + .
T Consensus 6 ~~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~sp~i~~~~~~~~~~ 85 (460)
T PRK01390 6 GFAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLSPGVPLTHPKPHWV 85 (460)
T ss_pred ccCCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEECCCCCccCCcccHH
Confidence 47899999999999999999999999997777664322221 23345543221 23356789887632 211 1 1
Q ss_pred cH---H----hccH-HHHhc-C-----CCCcEEEEcCCCchhcHHHHHhhhhhhhh
Q psy3240 110 TH---H----LINR-ARLES-M-----KPGAILINTSRGQLVDQEALIDFIADIRV 151 (274)
Q Consensus 110 T~---~----li~~-~~l~~-m-----k~gailINv~RG~iVde~aL~~~L~~~~i 151 (274)
.. . ++.+ +.+.. + +...+-|--+.|+.--.+-|...|+..|.
T Consensus 86 v~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~~g~ 141 (460)
T PRK01390 86 VDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILREAGR 141 (460)
T ss_pred HHHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCC
Confidence 11 1 1221 22222 2 23345566677998888888887877654
No 293
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.08 E-value=0.014 Score=57.82 Aligned_cols=114 Identities=14% Similarity=0.242 Sum_probs=68.5
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh--HhhcCCccc---CHHHHhcccCEEEEcCCCCcccHH
Q psy3240 38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--ADKRGAEHT---NIDDLCKQSDFIIITSALTPDTHH 112 (274)
Q Consensus 38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a~~~g~~~~---sl~ell~~aDvVil~lPlt~~T~~ 112 (274)
..+.+++|.|+|+|..|+++|+.|...|+++.++|++..... ....|+... ...+.+..+|+|+..--..+...-
T Consensus 11 ~~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Spgi~~~~p~ 90 (473)
T PRK00141 11 PQELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTSPGWRPDSPL 90 (473)
T ss_pred ccccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeCCCCCCCCHH
Confidence 468899999999999999999999999997777664332221 233466542 233456778988775322222111
Q ss_pred h----------ccHHHHh-c------C-CCC-cEEEEcCCCchhcHHHHHhhhhhhhh
Q psy3240 113 L----------INRARLE-S------M-KPG-AILINTSRGQLVDQEALIDFIADIRV 151 (274)
Q Consensus 113 l----------i~~~~l~-~------m-k~g-ailINv~RG~iVde~aL~~~L~~~~i 151 (274)
+ +..-.+. . + .+. .+-|--+-|+.--..-+...|+..|.
T Consensus 91 ~~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~g~ 148 (473)
T PRK00141 91 LVDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEGGF 148 (473)
T ss_pred HHHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCC
Confidence 1 2221221 1 1 122 33344455888777777777876554
No 294
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=96.08 E-value=0.029 Score=52.80 Aligned_cols=99 Identities=23% Similarity=0.332 Sum_probs=68.8
Q ss_pred CCCCCEEEEEcc---ChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCc-ccCHHHHhcccCEEEEcCCCCc------
Q psy3240 39 ALQNSTVGIVGC---GRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAE-HTNIDDLCKQSDFIIITSALTP------ 108 (274)
Q Consensus 39 ~L~gktVGIIGl---G~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~-~~sl~ell~~aDvVil~lPlt~------ 108 (274)
.+.|++|++||= +++..+++..+..+|+++++..+..-.+... .... ..+++++++.+|+|....=-.+
T Consensus 153 ~l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~~~~~-~~~~~~~d~~ea~~~aDvvyt~~~q~e~~~~~~ 231 (305)
T PRK00856 153 RLEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTLLPEGM-PEYGVHTDLDEVIEDADVVMMLRVQKERMDGGL 231 (305)
T ss_pred CCCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCcccCcccc-cceEEECCHHHHhCCCCEEEECCcccccccccc
Confidence 589999999997 5999999999999999777666544332211 0112 2489999999999988541100
Q ss_pred --cc-----HHhccHHHHhcCCCCcEEEEcC---CCchhc
Q psy3240 109 --DT-----HHLINRARLESMKPGAILINTS---RGQLVD 138 (274)
Q Consensus 109 --~T-----~~li~~~~l~~mk~gailINv~---RG~iVd 138 (274)
+- ...++++.++.+|++++|.-+- ||.=|+
T Consensus 232 ~~~~~~~~~~y~v~~~ll~~a~~~~~~mHcLPa~Rg~Ev~ 271 (305)
T PRK00856 232 LPSYEEYKRSYGLTAERLALAKPDAIVMHPGPVNRGVEIA 271 (305)
T ss_pred hHHHHHHhccCccCHHHHhhcCCCCEEECCCCCCCCCccC
Confidence 11 1235788898899999988764 565333
No 295
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=96.07 E-value=0.015 Score=59.37 Aligned_cols=90 Identities=20% Similarity=0.245 Sum_probs=62.7
Q ss_pred CCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-----CH---HH-HhcccCEEEEcCCCCcccH
Q psy3240 42 NSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-----NI---DD-LCKQSDFIIITSALTPDTH 111 (274)
Q Consensus 42 gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-----sl---~e-ll~~aDvVil~lPlt~~T~ 111 (274)
..+|.|+|+|++|+.+|+.|+..|.++++.|.+....+ .++.|.... +. ++ -+++||.++++++..+.+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~ 479 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTM 479 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHH
Confidence 46799999999999999999999998888887665444 455565321 22 22 1568999999999866655
Q ss_pred HhccHHHHhcCCCCcEEEEcCC
Q psy3240 112 HLINRARLESMKPGAILINTSR 133 (274)
Q Consensus 112 ~li~~~~l~~mk~gailINv~R 133 (274)
.++ ...+++.|...+|--+|
T Consensus 480 ~i~--~~~r~~~p~~~IiaRa~ 499 (601)
T PRK03659 480 KIV--ELCQQHFPHLHILARAR 499 (601)
T ss_pred HHH--HHHHHHCCCCeEEEEeC
Confidence 554 33445556656655444
No 296
>KOG2304|consensus
Probab=96.06 E-value=0.0023 Score=58.13 Aligned_cols=105 Identities=24% Similarity=0.282 Sum_probs=62.3
Q ss_pred CCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-Hhh---c--------C-Cc------------------cc
Q psy3240 40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADK---R--------G-AE------------------HT 88 (274)
Q Consensus 40 L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~---~--------g-~~------------------~~ 88 (274)
-.-+.|+|||.|.||..+|+.....|..+++++....... +.+ . + .. ..
T Consensus 9 ~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~t 88 (298)
T KOG2304|consen 9 AEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTST 88 (298)
T ss_pred ccccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcC
Confidence 4457899999999999999999999998888876544221 110 0 0 00 01
Q ss_pred CHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEE-EEcCCCchhcHHHHHh
Q psy3240 89 NIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAIL-INTSRGQLVDQEALID 144 (274)
Q Consensus 89 sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gail-INv~RG~iVde~aL~~ 144 (274)
++.++++.+|+|+=++-.+-..+.-+-++.=...|+.+++ .|+|+-.+-+.....+
T Consensus 89 nv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~lt~ia~~~~ 145 (298)
T KOG2304|consen 89 NVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSLTDIASATQ 145 (298)
T ss_pred CHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccceeHHHHHhhcc
Confidence 4455566677666555433333222222333345777776 5777766555444333
No 297
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=96.05 E-value=0.013 Score=53.22 Aligned_cols=36 Identities=25% Similarity=0.318 Sum_probs=30.6
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHccCCCeEE-EEeC
Q psy3240 38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKF-LYTS 73 (274)
Q Consensus 38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv-~~~~ 73 (274)
..|++++|+|||+|.+|..+|+.|...|...+ ++|.
T Consensus 28 ~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~ 64 (245)
T PRK05690 28 EKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDF 64 (245)
T ss_pred HHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 57999999999999999999999998887544 4443
No 298
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=96.02 E-value=0.021 Score=54.48 Aligned_cols=37 Identities=24% Similarity=0.330 Sum_probs=31.6
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHccCCC-eEEEEeCC
Q psy3240 38 PALQNSTVGIVGCGRIGLSVLEKLIPYKV-SKFLYTSR 74 (274)
Q Consensus 38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~-~vv~~~~r 74 (274)
..|+.++|.|||+|.+|..+|+.|...|. +..++|..
T Consensus 20 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 20 QKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 46899999999999999999999998888 45566654
No 299
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=96.01 E-value=0.024 Score=52.48 Aligned_cols=106 Identities=24% Similarity=0.286 Sum_probs=63.4
Q ss_pred CCEEEEEccChHHH-HHHHHHccCC--CeEEEEeCCCCCh-h--HhhcCCc--ccCHHHHhcc--cCEEEEcCCCCcccH
Q psy3240 42 NSTVGIVGCGRIGL-SVLEKLIPYK--VSKFLYTSRSKKP-E--ADKRGAE--HTNIDDLCKQ--SDFIIITSALTPDTH 111 (274)
Q Consensus 42 gktVGIIGlG~IG~-~iA~~L~~~G--~~vv~~~~r~~~~-~--a~~~g~~--~~sl~ell~~--aDvVil~lPlt~~T~ 111 (274)
-.+|||||+|.+++ ..+..++..+ +..+...++.... . +.+.++. +.+++++++. .|+|++++|..-...
T Consensus 3 ~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H~e 82 (342)
T COG0673 3 MIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALHAE 82 (342)
T ss_pred eeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhhHH
Confidence 35899999997775 5777887765 4555554444432 2 5667764 4589999986 599999999644333
Q ss_pred HhccHHHHhcCCCCcEEEEc-CCCchhcHHHHHhhhhhhhh
Q psy3240 112 HLINRARLESMKPGAILINT-SRGQLVDQEALIDFIADIRV 151 (274)
Q Consensus 112 ~li~~~~l~~mk~gailINv-~RG~iVde~aL~~~L~~~~i 151 (274)
.. ...|++=| .+++.= -.-.+.+.++|++.-++.|+
T Consensus 83 ~~--~~AL~aGk--hVl~EKPla~t~~ea~~l~~~a~~~~~ 119 (342)
T COG0673 83 LA--LAALEAGK--HVLCEKPLALTLEEAEELVELARKAGV 119 (342)
T ss_pred HH--HHHHhcCC--EEEEcCCCCCCHHHHHHHHHHHHHcCC
Confidence 22 23333222 233331 12233456667765555443
No 300
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=95.99 E-value=0.018 Score=53.68 Aligned_cols=103 Identities=17% Similarity=0.210 Sum_probs=64.2
Q ss_pred CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-Hh-hcCCcc------------cCHHHHhcccCEEEEcCCCCc
Q psy3240 43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-AD-KRGAEH------------TNIDDLCKQSDFIIITSALTP 108 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~-~~g~~~------------~sl~ell~~aDvVil~lPlt~ 108 (274)
++|+|+|.|.||.-+|-.|...|.++..+.+.....+ .. +.|... ....+....+|+|++++-..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~- 81 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKAY- 81 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCHH-
Confidence 5799999999999999999999997777766432222 11 112210 11122345789999998754
Q ss_pred ccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhh
Q psy3240 109 DTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIAD 148 (274)
Q Consensus 109 ~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~ 148 (274)
++...+ +...+.+.+++.+|-.--| +-.++.+.+.+.+
T Consensus 82 ~~~~al-~~l~~~l~~~t~vv~lQNG-v~~~e~l~~~~~~ 119 (305)
T PRK05708 82 DAEPAV-ASLAHRLAPGAELLLLQNG-LGSQDAVAARVPH 119 (305)
T ss_pred hHHHHH-HHHHhhCCCCCEEEEEeCC-CCCHHHHHHhCCC
Confidence 344443 3455667788877766443 2344556565543
No 301
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=95.95 E-value=0.041 Score=52.10 Aligned_cols=88 Identities=19% Similarity=0.276 Sum_probs=61.0
Q ss_pred CCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh--HhhcCCccc----C---HHHHhcccCEEEEcCCCCcccH
Q psy3240 41 QNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--ADKRGAEHT----N---IDDLCKQSDFIIITSALTPDTH 111 (274)
Q Consensus 41 ~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a~~~g~~~~----s---l~ell~~aDvVil~lPlt~~T~ 111 (274)
.|++|.|.|.|.+|..+++.++.+|+++++.+....+.. +++.|+... + +.++....|+|+-++....
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g~~~--- 259 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVSAVH--- 259 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECCCCHH---
Confidence 689999999999999999999999997666655444322 345676421 1 2233335799998775211
Q ss_pred HhccHHHHhcCCCCcEEEEcCC
Q psy3240 112 HLINRARLESMKPGAILINTSR 133 (274)
Q Consensus 112 ~li~~~~l~~mk~gailINv~R 133 (274)
.+ .+.++.++++..++.++.
T Consensus 260 -~~-~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 260 -AL-GPLLGLLKVNGKLITLGL 279 (360)
T ss_pred -HH-HHHHHHhcCCcEEEEeCC
Confidence 12 246777899999998874
No 302
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.95 E-value=0.02 Score=56.86 Aligned_cols=113 Identities=15% Similarity=0.142 Sum_probs=68.8
Q ss_pred CCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh---Hhhc--CCccc---CHHHHhcccCEEEEc--CCCC-
Q psy3240 39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE---ADKR--GAEHT---NIDDLCKQSDFIIIT--SALT- 107 (274)
Q Consensus 39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~---a~~~--g~~~~---sl~ell~~aDvVil~--lPlt- 107 (274)
++.+++|.|+|+|..|.++|+.|+..|.++.++|.+...+. .... |+... ...+.+..+|+|+.. +|.+
T Consensus 4 ~~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~sp~I~~~~ 83 (498)
T PRK02006 4 DLQGPMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALSPGLSPLE 83 (498)
T ss_pred ccCCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEECCCCCCcc
Confidence 46789999999999999999999999998888776543221 2222 33321 134556789999886 3332
Q ss_pred ----ccc-------HHhccH-HHHhc-C--------CCCcEEEEcCCCchhcHHHHHhhhhhhhh
Q psy3240 108 ----PDT-------HHLINR-ARLES-M--------KPGAILINTSRGQLVDQEALIDFIADIRV 151 (274)
Q Consensus 108 ----~~T-------~~li~~-~~l~~-m--------k~gailINv~RG~iVde~aL~~~L~~~~i 151 (274)
|.. ..++.. +.+.. + ++..+-|--+-|+.--..-+...|+..|.
T Consensus 84 ~~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g~ 148 (498)
T PRK02006 84 AALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAGK 148 (498)
T ss_pred cccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcCC
Confidence 111 112211 22211 2 12234444455887777777777877665
No 303
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=95.94 E-value=0.05 Score=50.00 Aligned_cols=64 Identities=14% Similarity=0.258 Sum_probs=43.4
Q ss_pred CEEEEEc-cChHHHHHHHHHcc-CCCeEEEEeCCCCC-h---h-Hhh-----cCCcc-cCHHHHhcccCEEEEcCCC
Q psy3240 43 STVGIVG-CGRIGLSVLEKLIP-YKVSKFLYTSRSKK-P---E-ADK-----RGAEH-TNIDDLCKQSDFIIITSAL 106 (274)
Q Consensus 43 ktVGIIG-lG~IG~~iA~~L~~-~G~~vv~~~~r~~~-~---~-a~~-----~g~~~-~sl~ell~~aDvVil~lPl 106 (274)
.+|+|+| +|.||+.+++.+.. -+++.+...++... . . ... .++.. .+++++...+|+|+.+.|.
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~p 78 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTTP 78 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCCh
Confidence 4899999 69999999999874 57876665543221 1 1 111 23433 3788886679999998864
No 304
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=95.92 E-value=0.042 Score=54.74 Aligned_cols=103 Identities=14% Similarity=0.223 Sum_probs=70.1
Q ss_pred CCCCCCEEEEEcc----------ChHHHHHHHHHccCCCeEEEEeCCCCChhHh-hc----------------------C
Q psy3240 38 PALQNSTVGIVGC----------GRIGLSVLEKLIPYKVSKFLYTSRSKKPEAD-KR----------------------G 84 (274)
Q Consensus 38 ~~L~gktVGIIGl----------G~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~-~~----------------------g 84 (274)
.++.|++|+|+|+ ..-...+++.|...|.++.+||+........ .. .
T Consensus 320 ~~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (473)
T PLN02353 320 NTVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQ 399 (473)
T ss_pred cccCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccc
Confidence 3689999999998 4578899999999999888888764332211 11 1
Q ss_pred Cccc-CHHHHhcccCEEEEcCCCCcccHHhccH-HHHhcCCCCcEEEEcCCCchhcHHHHHh
Q psy3240 85 AEHT-NIDDLCKQSDFIIITSALTPDTHHLINR-ARLESMKPGAILINTSRGQLVDQEALID 144 (274)
Q Consensus 85 ~~~~-sl~ell~~aDvVil~lPlt~~T~~li~~-~~l~~mk~gailINv~RG~iVde~aL~~ 144 (274)
+..+ +++++++.||+|+++++-. +-+. ++- +..+.|++..+++|. |+- .|.+.+.+
T Consensus 400 ~~~~~~~~~a~~~aD~vvi~t~~~-ef~~-l~~~~~~~~m~~~~~viD~-rn~-l~~~~~~~ 457 (473)
T PLN02353 400 VSVVWDAYEATKGAHGICILTEWD-EFKT-LDYQKIYDNMQKPAFVFDG-RNV-LDHEKLRE 457 (473)
T ss_pred eeeeCCHHHHhcCCCEEEECCCCh-Hhcc-cCHHHHHHhccCCCEEEEC-CCC-CCHHHHHh
Confidence 1223 5678999999999988753 3333 343 335567766689995 433 46655544
No 305
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=95.91 E-value=0.031 Score=60.51 Aligned_cols=107 Identities=17% Similarity=0.187 Sum_probs=62.3
Q ss_pred CCCCEEEEEccChHHHHHHHHHccC-CCe-------------EEEEeCCCCChh--Hhhc-CC---c--ccCHHH---Hh
Q psy3240 40 LQNSTVGIVGCGRIGLSVLEKLIPY-KVS-------------KFLYTSRSKKPE--ADKR-GA---E--HTNIDD---LC 94 (274)
Q Consensus 40 L~gktVGIIGlG~IG~~iA~~L~~~-G~~-------------vv~~~~r~~~~~--a~~~-g~---~--~~sl~e---ll 94 (274)
-+.|+|+|||.|.||+..|+.|... +.+ +.+.+......+ +... ++ . ..+.++ ++
T Consensus 567 ~~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v 646 (1042)
T PLN02819 567 KKSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYV 646 (1042)
T ss_pred ccCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhh
Confidence 3578999999999999999999753 332 344444332222 2222 32 1 124444 44
Q ss_pred cccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhhe
Q psy3240 95 KQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVI 152 (274)
Q Consensus 95 ~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~ 152 (274)
+++|+|++++|..- ..-+-+ ..++.|.-+++.+ -..-+..+|.+.-++.|+.
T Consensus 647 ~~~DaVIsalP~~~--H~~VAk---aAieaGkHvv~ek-y~~~e~~~L~e~Ak~AGV~ 698 (1042)
T PLN02819 647 SQVDVVISLLPASC--HAVVAK---ACIELKKHLVTAS-YVSEEMSALDSKAKEAGIT 698 (1042)
T ss_pred cCCCEEEECCCchh--hHHHHH---HHHHcCCCEEECc-CCHHHHHHHHHHHHHcCCE
Confidence 68999999999632 111212 2234555666665 2333555666766666663
No 306
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=95.90 E-value=0.046 Score=53.05 Aligned_cols=90 Identities=17% Similarity=0.267 Sum_probs=61.9
Q ss_pred CCCCCEEEEEcc----------ChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCc
Q psy3240 39 ALQNSTVGIVGC----------GRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTP 108 (274)
Q Consensus 39 ~L~gktVGIIGl----------G~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~ 108 (274)
++.|++|+|+|+ ..-...+++.|...|+++.+||+..........+ ...++++.++.+|+|+++++..
T Consensus 310 ~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~~~~~~-~~~~~~~~~~~ad~~v~~t~~~- 387 (411)
T TIGR03026 310 PLKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEEVKGLP-LIDDLEEALKGADALVILTDHD- 387 (411)
T ss_pred cccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChhhhhhcc-cCCCHHHHHhCCCEEEEecCCH-
Confidence 589999999998 4578899999999999888888764432221111 1248889999999999988743
Q ss_pred ccHHhccHHHHhcCCCCcEEEEc
Q psy3240 109 DTHHLINRARLESMKPGAILINT 131 (274)
Q Consensus 109 ~T~~li~~~~l~~mk~gailINv 131 (274)
+-+. ++-+.+..+-+..+++|.
T Consensus 388 ~~~~-~~~~~~~~~~~~~~v~D~ 409 (411)
T TIGR03026 388 EFKD-LDLEKIKDLMKGKVVVDT 409 (411)
T ss_pred HHhc-cCHHHHHHhcCCCEEEeC
Confidence 2222 344444433234578875
No 307
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=95.89 E-value=0.033 Score=54.71 Aligned_cols=113 Identities=19% Similarity=0.233 Sum_probs=72.3
Q ss_pred CCCCCEEEEEccChHHHH-HHHHHccCCCeEEEEeCCCCChh--HhhcCCccc--CHHHHhcccCEEEEcCCCCcccH--
Q psy3240 39 ALQNSTVGIVGCGRIGLS-VLEKLIPYKVSKFLYTSRSKKPE--ADKRGAEHT--NIDDLCKQSDFIIITSALTPDTH-- 111 (274)
Q Consensus 39 ~L~gktVGIIGlG~IG~~-iA~~L~~~G~~vv~~~~r~~~~~--a~~~g~~~~--sl~ell~~aDvVil~lPlt~~T~-- 111 (274)
..++++|.|+|+|..|.+ +|+.|+..|.++.++|.+..... ..+.|+... ...+.+..+|+|+..--..+...
T Consensus 4 ~~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi~~~~~~~ 83 (461)
T PRK00421 4 LRRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAIPDDNPEL 83 (461)
T ss_pred cCCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCCCCCCHHH
Confidence 457889999999999999 79999999998877776543222 233465442 22345678998887543322222
Q ss_pred --------HhccH-HHHhcC-CC-CcEEEEcCCCchhcHHHHHhhhhhhhh
Q psy3240 112 --------HLINR-ARLESM-KP-GAILINTSRGQLVDQEALIDFIADIRV 151 (274)
Q Consensus 112 --------~li~~-~~l~~m-k~-gailINv~RG~iVde~aL~~~L~~~~i 151 (274)
.+++. +++..+ ++ ..+-|--+-|+.-...-+...|+..|.
T Consensus 84 ~~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g~ 134 (461)
T PRK00421 84 VAARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAGL 134 (461)
T ss_pred HHHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcCC
Confidence 12332 333333 32 344455556888888888888887774
No 308
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=95.86 E-value=0.062 Score=51.23 Aligned_cols=96 Identities=17% Similarity=0.208 Sum_probs=66.6
Q ss_pred CCCCCCCEEEEEccC--hHHHHHHHHHccCCCeEEEEeCCCCChh----------HhhcCCc--c-cCHHHHhcccCEEE
Q psy3240 37 GPALQNSTVGIVGCG--RIGLSVLEKLIPYKVSKFLYTSRSKKPE----------ADKRGAE--H-TNIDDLCKQSDFII 101 (274)
Q Consensus 37 g~~L~gktVGIIGlG--~IG~~iA~~L~~~G~~vv~~~~r~~~~~----------a~~~g~~--~-~sl~ell~~aDvVi 101 (274)
|..+.|++|++||=+ ++..+++..+..+|+++.+..++.-.+. +...|.. . .+++++++++|+|.
T Consensus 151 g~~l~gl~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvVy 230 (334)
T PRK01713 151 DKPLSEISYVYIGDARNNMGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVTDDIDKAVKGVDFVH 230 (334)
T ss_pred CCCcCCcEEEEECCCccCHHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEE
Confidence 446899999999976 6889999999999998777766543221 1223543 2 48999999999999
Q ss_pred EcC----CCCcc---c------HHhccHHHHhcC-CCCcEEEEcC
Q psy3240 102 ITS----ALTPD---T------HHLINRARLESM-KPGAILINTS 132 (274)
Q Consensus 102 l~l----Plt~~---T------~~li~~~~l~~m-k~gailINv~ 132 (274)
.-. ....+ . ...++.+.++.. |++++|.-+.
T Consensus 231 t~~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~k~~aivmH~l 275 (334)
T PRK01713 231 TDVWVSMGEPLETWGERIKLLMPYQVTPELMKRTGNPKVKFMHCL 275 (334)
T ss_pred EcceeecccchhhHHHHHHhccCCcCCHHHHhccCCCCCEEECCC
Confidence 832 11001 1 112577888886 7899998775
No 309
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=95.86 E-value=0.028 Score=52.49 Aligned_cols=88 Identities=16% Similarity=0.166 Sum_probs=62.0
Q ss_pred CCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-CHH-HHhcccCEEEEcCCCCcccHHhccHH
Q psy3240 41 QNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-NID-DLCKQSDFIIITSALTPDTHHLINRA 117 (274)
Q Consensus 41 ~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-sl~-ell~~aDvVil~lPlt~~T~~li~~~ 117 (274)
.|.+|.|.|.|.+|...++.++..|+++++.+.+..+.+ +++.|+..+ +.. +.-...|+++.+.... ..+ ..
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~~~~~----~~~-~~ 239 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAPAG----GLV-PP 239 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccccccCcccceEEEECCCcH----HHH-HH
Confidence 589999999999999999999999997666665544444 677887543 221 1123468777766532 122 35
Q ss_pred HHhcCCCCcEEEEcCC
Q psy3240 118 RLESMKPGAILINTSR 133 (274)
Q Consensus 118 ~l~~mk~gailINv~R 133 (274)
.++.++++..++.++.
T Consensus 240 ~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 240 ALEALDRGGVLAVAGI 255 (329)
T ss_pred HHHhhCCCcEEEEEec
Confidence 7788899999988874
No 310
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=95.84 E-value=0.02 Score=53.22 Aligned_cols=60 Identities=22% Similarity=0.374 Sum_probs=40.6
Q ss_pred EEEEccChHHHHHHHHHccCCC-eEEEEeCCCCChh--Hh---hc----CC----cc-cCHHHHhcccCEEEEcCC
Q psy3240 45 VGIVGCGRIGLSVLEKLIPYKV-SKFLYTSRSKKPE--AD---KR----GA----EH-TNIDDLCKQSDFIIITSA 105 (274)
Q Consensus 45 VGIIGlG~IG~~iA~~L~~~G~-~vv~~~~r~~~~~--a~---~~----g~----~~-~sl~ell~~aDvVil~lP 105 (274)
|+|||.|.||..+|..+...|. +++++|....... .. .. +. .. .+. +.++.||+|+++..
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~-~~l~dADiVIit~g 75 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDY-EDIAGSDVVVITAG 75 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCH-HHhCCCCEEEEecC
Confidence 6899999999999998875554 7888887654321 11 10 11 11 244 45899999999774
No 311
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=95.84 E-value=0.018 Score=59.03 Aligned_cols=88 Identities=19% Similarity=0.186 Sum_probs=60.4
Q ss_pred CCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-----CHHH----HhcccCEEEEcCCCCcccH
Q psy3240 42 NSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-----NIDD----LCKQSDFIIITSALTPDTH 111 (274)
Q Consensus 42 gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-----sl~e----ll~~aDvVil~lPlt~~T~ 111 (274)
..+|-|+|+|++|+.+|+.|++.|.+.++.|.+....+ .++.|.... +.+- -++++|.++++++..+.+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~ 479 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSL 479 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHH
Confidence 47899999999999999999999998888887665544 455565421 2221 2458999999998766555
Q ss_pred HhccHHHHhcCCCCcEEEEc
Q psy3240 112 HLINRARLESMKPGAILINT 131 (274)
Q Consensus 112 ~li~~~~l~~mk~gailINv 131 (274)
.+. ...+.+.|...++--
T Consensus 480 ~i~--~~ar~~~p~~~iiaR 497 (621)
T PRK03562 480 QLV--ELVKEHFPHLQIIAR 497 (621)
T ss_pred HHH--HHHHHhCCCCeEEEE
Confidence 443 334444555555443
No 312
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.84 E-value=0.026 Score=55.53 Aligned_cols=114 Identities=14% Similarity=0.210 Sum_probs=71.3
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCCh-----h-HhhcCCccc--CHHHHhcccCEEEEcCCCCcc
Q psy3240 38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKP-----E-ADKRGAEHT--NIDDLCKQSDFIIITSALTPD 109 (274)
Q Consensus 38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~-----~-a~~~g~~~~--sl~ell~~aDvVil~lPlt~~ 109 (274)
.++.+++|.|||.|.+|.++|+.|+..|.++++++.+.... . ..+.|+... .-.+....+|+|+++.-..+.
T Consensus 12 ~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~D~Vv~s~Gi~~~ 91 (480)
T PRK01438 12 SDWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPTLPEDTDLVVTSPGWRPD 91 (480)
T ss_pred cCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCccccCCCCEEEECCCcCCC
Confidence 46789999999999999999999999999877777554211 1 234466542 111244569999988754444
Q ss_pred cHHh----------ccH-HHH-hcCCC----CcEEEEcCCCchhcHHHHHhhhhhhhh
Q psy3240 110 THHL----------INR-ARL-ESMKP----GAILINTSRGQLVDQEALIDFIADIRV 151 (274)
Q Consensus 110 T~~l----------i~~-~~l-~~mk~----gailINv~RG~iVde~aL~~~L~~~~i 151 (274)
+.-+ ++. +.+ ..+.+ ..+-|--+.|+.--..-+...|+..|.
T Consensus 92 ~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~g~ 149 (480)
T PRK01438 92 APLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAAGL 149 (480)
T ss_pred CHHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHcCC
Confidence 3322 221 232 23322 234454456887777777777776543
No 313
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=95.81 E-value=0.026 Score=51.21 Aligned_cols=37 Identities=30% Similarity=0.319 Sum_probs=30.9
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHccCCCeEEE-EeCC
Q psy3240 38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFL-YTSR 74 (274)
Q Consensus 38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~-~~~r 74 (274)
..|++++|.|+|+|.+|..+|+.|...|...+. +|..
T Consensus 20 ~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 57 (240)
T TIGR02355 20 EALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD 57 (240)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 468999999999999999999999988875544 4443
No 314
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=95.79 E-value=0.019 Score=48.25 Aligned_cols=64 Identities=19% Similarity=0.287 Sum_probs=47.1
Q ss_pred EEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcc--------cCHHHHhcccCEEEEcCCCCcc
Q psy3240 45 VGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEH--------TNIDDLCKQSDFIIITSALTPD 109 (274)
Q Consensus 45 VGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~--------~sl~ell~~aDvVil~lPlt~~ 109 (274)
|.|+|. |.+|+.+++.|...|.++++..++..+... ..+++. .++.+.++.+|+|+.+++....
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~-~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~~ 73 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED-SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPPK 73 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH-CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTTT
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc-ccccccceeeehhhhhhhhhhhhcchhhhhhhhhcc
Confidence 678995 999999999999999988887766553322 223321 1456788899999999986444
No 315
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=95.77 E-value=0.088 Score=49.49 Aligned_cols=102 Identities=23% Similarity=0.369 Sum_probs=71.2
Q ss_pred CCCCCEEEEEccC---hHHHHHHHHHccCCCeEEEEeCCCCC-h-h----HhhcCCcc---cCHHHHhcccCEEEEcCCC
Q psy3240 39 ALQNSTVGIVGCG---RIGLSVLEKLIPYKVSKFLYTSRSKK-P-E----ADKRGAEH---TNIDDLCKQSDFIIITSAL 106 (274)
Q Consensus 39 ~L~gktVGIIGlG---~IG~~iA~~L~~~G~~vv~~~~r~~~-~-~----a~~~g~~~---~sl~ell~~aDvVil~lPl 106 (274)
.+.|++|+++|-| ++.++++..+..+|+++.+..+..-. + . +.+.|... .++++.++.+|+|...--.
T Consensus 147 ~l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~~a~~~aDvvyt~~~~ 226 (301)
T TIGR00670 147 RLDGLKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETESLEEVIDEADVLYVTRIQ 226 (301)
T ss_pred CCCCCEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEECCHHHHhCCCCEEEECCcc
Confidence 5899999999985 99999999999999987777665431 1 1 22345432 4899999999999884211
Q ss_pred Cc-----cc------HHhccHHHHhcCCCCcEEEEcC-CCchhcHH
Q psy3240 107 TP-----DT------HHLINRARLESMKPGAILINTS-RGQLVDQE 140 (274)
Q Consensus 107 t~-----~T------~~li~~~~l~~mk~gailINv~-RG~iVde~ 140 (274)
.+ .. ..-++++.++.++++++|.-+. ||.=|+.+
T Consensus 227 ~er~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mHclPRg~Ev~~~ 272 (301)
T TIGR00670 227 KERFPDPEEYEKYKGSYGITLERLEAAKKGVIIMHPLPRVDEIDPS 272 (301)
T ss_pred ccccCCHHHHHHHhcCCeECHHHHhhcCCCCEEECCCCCCcccCHH
Confidence 00 01 1235778899999999998654 66644433
No 316
>PRK10637 cysG siroheme synthase; Provisional
Probab=95.77 E-value=0.023 Score=56.14 Aligned_cols=75 Identities=9% Similarity=-0.052 Sum_probs=51.5
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh--Hhhc-CCccc--C-HHHHhcccCEEEEcCCCCcccH
Q psy3240 38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--ADKR-GAEHT--N-IDDLCKQSDFIIITSALTPDTH 111 (274)
Q Consensus 38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a~~~-g~~~~--s-l~ell~~aDvVil~lPlt~~T~ 111 (274)
-+|+|++|.|||-|.++..=++.|..+|+++.++.+...... .... .+... + .++.++.+++|+.++...+-++
T Consensus 8 ~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~~~n~ 87 (457)
T PRK10637 8 CQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDDAVNQ 87 (457)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCEEEEECCCCHHHhH
Confidence 489999999999999999999999999998777765443221 1111 22221 1 2345688999988877544443
Q ss_pred H
Q psy3240 112 H 112 (274)
Q Consensus 112 ~ 112 (274)
.
T Consensus 88 ~ 88 (457)
T PRK10637 88 R 88 (457)
T ss_pred H
Confidence 3
No 317
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=95.76 E-value=0.029 Score=52.94 Aligned_cols=27 Identities=22% Similarity=0.466 Sum_probs=23.9
Q ss_pred EEEEEccChHHHHHHHHHccCCCeEEE
Q psy3240 44 TVGIVGCGRIGLSVLEKLIPYKVSKFL 70 (274)
Q Consensus 44 tVGIIGlG~IG~~iA~~L~~~G~~vv~ 70 (274)
+|+|||+|.+|..+|+.|...|...+.
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~It 27 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHIT 27 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEE
Confidence 589999999999999999999886544
No 318
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=95.68 E-value=0.034 Score=52.31 Aligned_cols=86 Identities=17% Similarity=0.239 Sum_probs=57.4
Q ss_pred CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCc-------------ccCHHHHhcccCEEEEcCCCCc
Q psy3240 43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAE-------------HTNIDDLCKQSDFIIITSALTP 108 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~-------------~~sl~ell~~aDvVil~lPlt~ 108 (274)
++|.|+|.|.||.-++.+|...|. .+....|.+..+ ..+.|.. .....+.+..+|+|++++-. -
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~-~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa-~ 78 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGH-DVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKA-Y 78 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCC-eEEEEecHHHHHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEecc-c
Confidence 589999999999999999999994 555555555422 2222321 11234566689999998864 3
Q ss_pred ccHHhccHHHHhcCCCCcEEEEc
Q psy3240 109 DTHHLINRARLESMKPGAILINT 131 (274)
Q Consensus 109 ~T~~li~~~~l~~mk~gailINv 131 (274)
++...+ +...+.+++.+.++-+
T Consensus 79 q~~~al-~~l~~~~~~~t~vl~l 100 (307)
T COG1893 79 QLEEAL-PSLAPLLGPNTVVLFL 100 (307)
T ss_pred cHHHHH-HHhhhcCCCCcEEEEE
Confidence 444444 4566677888766643
No 319
>PRK14851 hypothetical protein; Provisional
Probab=95.68 E-value=0.0083 Score=62.22 Aligned_cols=66 Identities=17% Similarity=0.234 Sum_probs=45.3
Q ss_pred chhhhhHHHHHHHhhhccchhccCCCCccCCCCCCCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEE
Q psy3240 2 YRQIYNFIYIDVIKYVSTPVSCRGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLY 71 (274)
Q Consensus 2 ~~~~~~~~~l~~~r~~~~~~~~~~~w~~~~~~~~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~ 71 (274)
-+..++|-+++...|.....+++-.| |... .-..|++++|+|+|+|.+|..+|..|...|...+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~ry~R~~~l--~g~e--~Q~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~L 72 (679)
T PRK14851 7 LETLQTLGISSAAEYREAAFSRNIGL--FTPG--EQERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHI 72 (679)
T ss_pred HHHHHHcCCCCHHHHHHHHhhhhHHh--cCHH--HHHHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEE
Confidence 35567777777777765444443222 1111 115699999999999999999999999888755443
No 320
>PTZ00325 malate dehydrogenase; Provisional
Probab=95.68 E-value=0.089 Score=49.89 Aligned_cols=97 Identities=24% Similarity=0.234 Sum_probs=57.6
Q ss_pred CCCCCCEEEEEcc-ChHHHHHHHHHccCC--CeEEEEeCCCCChhHhh---c--CCccc------CHHHHhcccCEEEEc
Q psy3240 38 PALQNSTVGIVGC-GRIGLSVLEKLIPYK--VSKFLYTSRSKKPEADK---R--GAEHT------NIDDLCKQSDFIIIT 103 (274)
Q Consensus 38 ~~L~gktVGIIGl-G~IG~~iA~~L~~~G--~~vv~~~~r~~~~~a~~---~--g~~~~------sl~ell~~aDvVil~ 103 (274)
..++.++|+|+|. |.+|..+|..|...+ -+.+.+|.......+.+ . ..... +..+.++.||+|+++
T Consensus 4 ~~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVit 83 (321)
T PTZ00325 4 SALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLIC 83 (321)
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEEC
Confidence 4577889999999 999999999998444 45666765221211111 0 11111 126789999999988
Q ss_pred CCCCcc---cH-HhccH------HH---HhcCCCCcEEEEcCCC
Q psy3240 104 SALTPD---TH-HLINR------AR---LESMKPGAILINTSRG 134 (274)
Q Consensus 104 lPlt~~---T~-~li~~------~~---l~~mk~gailINv~RG 134 (274)
+-.... ++ .++.. +. +..-.+.++++.++-+
T Consensus 84 aG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNP 127 (321)
T PTZ00325 84 AGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNP 127 (321)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence 754221 22 22221 22 3333567788887643
No 321
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=95.67 E-value=0.064 Score=50.09 Aligned_cols=215 Identities=15% Similarity=0.185 Sum_probs=104.6
Q ss_pred CEEEEEccChHHHHHHHHHcc-CCCeEEEEeCCCCCh---h-HhhcCCcc--cCHHHHhc--ccCEEEEcCCCCcccHHh
Q psy3240 43 STVGIVGCGRIGLSVLEKLIP-YKVSKFLYTSRSKKP---E-ADKRGAEH--TNIDDLCK--QSDFIIITSALTPDTHHL 113 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~~L~~-~G~~vv~~~~r~~~~---~-a~~~g~~~--~sl~ell~--~aDvVil~lPlt~~T~~l 113 (274)
.+|||||.|+||+..+..+.. -+++.....++.... . +.+.|+.. .+.+++++ +.|+|++++|.....+
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H~e-- 79 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHAR-- 79 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHHHH--
Confidence 479999999999988766653 356555444333321 2 55567653 37888885 5788999998642221
Q ss_pred ccHHHHhcCCCCcEEEEcCCCc-------hhcHHHHHhhhhhhhheeehhhccccc--ccceeecCCCcccCccceeeee
Q psy3240 114 INRARLESMKPGAILINTSRGQ-------LVDQEALIDFIADIRVISISMVTNEKH--LHRVFTLGDSFHKGHVSAFIFI 184 (274)
Q Consensus 114 i~~~~l~~mk~gailINv~RG~-------iVde~aL~~~L~~~~i~~~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 184 (274)
-....++.|..+++-.--. .|+.+++.+ ..++.++-|.....- ...+.-+.+..+. ....=|.+
T Consensus 80 ---~a~~al~aGk~VIdekPa~~~plvvp~VN~~~~~~---~~~~~iv~c~~~atip~~~al~r~~d~~~~-~iv~ti~s 152 (285)
T TIGR03215 80 ---HARLLAELGKIVIDLTPAAIGPYVVPAVNLDEHLD---APNVNMVTCGGQATIPIVAAISRVAPVHYA-EIVASIAS 152 (285)
T ss_pred ---HHHHHHHcCCEEEECCccccCCccCCCcCHHHHhc---CcCCCEEEcCcHHHHHHHHHHHHhhccccE-EEEEEEEe
Confidence 1223346677777765333 255554443 122222222221110 0111122222222 11111122
Q ss_pred ecc-cCCccceeeeh-hhhHHHhc--CceeEEEeccCCCCCCCCCCccccCCcEEEccCCCCCcHHHHHHHHHHHHHHHH
Q psy3240 185 HMI-MGDTVGIYFIF-SASDVLKA--KKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNII 260 (274)
Q Consensus 185 ~~i-~~~~~~~~~~~-~~~~~l~~--g~i~~a~lDv~~~ep~~~~~~l~~~~nvi~tPH~~~~t~~~~~~~~~~~~~ni~ 260 (274)
--. +|...++.++. .-..+++. |--.|-++=+. -|++.|+.-..-|.+.. .....++........++.++
T Consensus 153 ~S~g~g~r~~idel~~~t~~~~~~~gG~~~~k~~~~~----~~a~p~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 226 (285)
T TIGR03215 153 RSAGPGTRANIDEFTETTSRALEQVGGAKKGKAIIIL----NPAEPPLMMRDTIYCLV--EDPDEDAIEASVEEMVAEVQ 226 (285)
T ss_pred eccCCCchhHHHHHHHHHHHHHHHcCCcccceEEEEe----cCCCCCccceeeEEEec--CCCCHHHHHHHHHHHHHHHH
Confidence 222 33333433332 11222211 11111111111 13445555555554433 33566777777777788999
Q ss_pred HHHcCCCCCCcc
Q psy3240 261 NTFHNKPMIYEV 272 (274)
Q Consensus 261 ~~~~g~~~~~~v 272 (274)
+|.-|-.++.++
T Consensus 227 ~~vpgy~~~~~~ 238 (285)
T TIGR03215 227 KYVPGYRLKQEP 238 (285)
T ss_pred hhCCCEEeeece
Confidence 999886665543
No 322
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=95.64 E-value=0.053 Score=50.07 Aligned_cols=87 Identities=14% Similarity=0.028 Sum_probs=56.7
Q ss_pred CCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh--HhhcCCcccCHHH-HhcccCEEEEcCCCCcccHHhccH
Q psy3240 40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--ADKRGAEHTNIDD-LCKQSDFIIITSALTPDTHHLINR 116 (274)
Q Consensus 40 L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a~~~g~~~~sl~e-ll~~aDvVil~lPlt~~T~~li~~ 116 (274)
..|+++.|+|.|.||...++.++.+|+++++..++..... +.... ..+..+ .-...|+|+-++.... .+ .
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~--~i~~~~~~~~g~Dvvid~~G~~~----~~-~ 215 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYE--VLDPEKDPRRDYRAIYDASGDPS----LI-D 215 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcc--ccChhhccCCCCCEEEECCCCHH----HH-H
Confidence 3578999999999999999999999997665544332221 22211 122222 2235799998876321 12 3
Q ss_pred HHHhcCCCCcEEEEcCC
Q psy3240 117 ARLESMKPGAILINTSR 133 (274)
Q Consensus 117 ~~l~~mk~gailINv~R 133 (274)
..++.++++..++.+|-
T Consensus 216 ~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 216 TLVRRLAKGGEIVLAGF 232 (308)
T ss_pred HHHHhhhcCcEEEEEee
Confidence 56778899999998874
No 323
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=95.63 E-value=0.015 Score=56.84 Aligned_cols=113 Identities=18% Similarity=0.122 Sum_probs=67.6
Q ss_pred CEEEEEccChHHHHHHH---HH---ccCCCeEEEEeCCCCChh-H--------hhcCC----c-ccCHHHHhcccCEEEE
Q psy3240 43 STVGIVGCGRIGLSVLE---KL---IPYKVSKFLYTSRSKKPE-A--------DKRGA----E-HTNIDDLCKQSDFIII 102 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~---~L---~~~G~~vv~~~~r~~~~~-a--------~~~g~----~-~~sl~ell~~aDvVil 102 (274)
.+|+|||.|.+|.+.+. .+ ...|.+++.||.+..... . ...+. . ..++.+.++.||+|+.
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~ 80 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVIN 80 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEE
Confidence 37999999999998655 22 334556777776543322 1 11111 1 1278899999999999
Q ss_pred cCCCCcc---cH---------------------Hhc--------cHHHHhcC---CCCcEEEEcCCCchhcHHHHHhhhh
Q psy3240 103 TSALTPD---TH---------------------HLI--------NRARLESM---KPGAILINTSRGQLVDQEALIDFIA 147 (274)
Q Consensus 103 ~lPlt~~---T~---------------------~li--------~~~~l~~m---k~gailINv~RG~iVde~aL~~~L~ 147 (274)
++|.... .+ +++ -.+..+.+ .|.++++|.+--.-+-..++.+...
T Consensus 81 ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tNPv~i~t~~~~k~~~ 160 (423)
T cd05297 81 TIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPMAELTWALNRYTP 160 (423)
T ss_pred eeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCChHHHHHHHHHHhCC
Confidence 9984110 00 011 11223333 3799999998766666667766554
Q ss_pred hhhheeeh
Q psy3240 148 DIRVISIS 155 (274)
Q Consensus 148 ~~~i~~~D 155 (274)
.+.++.+|
T Consensus 161 ~rviG~c~ 168 (423)
T cd05297 161 IKTVGLCH 168 (423)
T ss_pred CCEEEECC
Confidence 44455554
No 324
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=95.62 E-value=0.035 Score=53.15 Aligned_cols=61 Identities=23% Similarity=0.391 Sum_probs=44.6
Q ss_pred CCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcC----Cccc---CHHHHhcccCEEEE
Q psy3240 42 NSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRG----AEHT---NIDDLCKQSDFIII 102 (274)
Q Consensus 42 gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g----~~~~---sl~ell~~aDvVil 102 (274)
.++|||||-|..|+.+++.++.+|.+++++++....+...-.. ..+. .+.++++.||+|..
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~ 69 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITY 69 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEe
Confidence 4789999999999999999999999888888765443311111 1122 36678889999865
No 325
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=95.61 E-value=0.041 Score=43.70 Aligned_cols=84 Identities=20% Similarity=0.290 Sum_probs=51.1
Q ss_pred ccChHHHHHHHHHccC----CCeEEEEeCCCC---Chh-Hhh-cCCcccCHHHHhc--ccCEEEEcCCCCcccHHhccHH
Q psy3240 49 GCGRIGLSVLEKLIPY----KVSKFLYTSRSK---KPE-ADK-RGAEHTNIDDLCK--QSDFIIITSALTPDTHHLINRA 117 (274)
Q Consensus 49 GlG~IG~~iA~~L~~~----G~~vv~~~~r~~---~~~-a~~-~g~~~~sl~ell~--~aDvVil~lPlt~~T~~li~~~ 117 (274)
|+|.||+.+++.++.. +++++...++.. ... ... ......++++++. ..|+|+=|.+..+.. +-
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~~~~~-----~~ 75 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSSEAVA-----EY 75 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSCHHHH-----HH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCchHHH-----HH
Confidence 8999999999999764 666655555541 111 111 2223358999988 899999996542222 22
Q ss_pred HHhcCCCCcEEEEcCCCchh
Q psy3240 118 RLESMKPGAILINTSRGQLV 137 (274)
Q Consensus 118 ~l~~mk~gailINv~RG~iV 137 (274)
..+.|+.|.-+|-.+-+.+.
T Consensus 76 ~~~~L~~G~~VVt~nk~ala 95 (117)
T PF03447_consen 76 YEKALERGKHVVTANKGALA 95 (117)
T ss_dssp HHHHHHTTCEEEES-HHHHH
T ss_pred HHHHHHCCCeEEEECHHHhh
Confidence 34445778888888877777
No 326
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=95.61 E-value=0.069 Score=51.05 Aligned_cols=95 Identities=15% Similarity=0.230 Sum_probs=67.9
Q ss_pred CCCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCCh--h----H----hhcCCc--c-cCHHHHhcccCEEEEc
Q psy3240 38 PALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKP--E----A----DKRGAE--H-TNIDDLCKQSDFIIIT 103 (274)
Q Consensus 38 ~~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~--~----a----~~~g~~--~-~sl~ell~~aDvVil~ 103 (274)
..+.|++|+++|= .++..+++..+..+|+++.++.+..-.. . + ...|.. . .+++++++.+|+|..-
T Consensus 150 ~~l~glkv~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~~ 229 (338)
T PRK02255 150 KKLEDCKVVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTDDVDEAVKDADFVYTD 229 (338)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEc
Confidence 4699999999996 6899999999999999877776653211 1 1 112432 2 4899999999999993
Q ss_pred C-----CCCc--cc-------HHhccHHHHhcCCCCcEEEEcC
Q psy3240 104 S-----ALTP--DT-------HHLINRARLESMKPGAILINTS 132 (274)
Q Consensus 104 l-----Plt~--~T-------~~li~~~~l~~mk~gailINv~ 132 (274)
. .... .. ...++++.++.+|++++|.-+.
T Consensus 230 ~w~~~~~~~~~~~~r~~~~~~~y~v~~ell~~a~~~~ivmHpL 272 (338)
T PRK02255 230 VWYGLYDAELSEEERMAIFYPKYQVTPELMAKAGPHAKFMHCL 272 (338)
T ss_pred ccHhhccchhhHHHHHHhhCCCceECHHHHhccCCCCEEeCCC
Confidence 3 1100 00 1456889999999999998875
No 327
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=95.61 E-value=0.0092 Score=49.71 Aligned_cols=92 Identities=15% Similarity=0.259 Sum_probs=56.5
Q ss_pred EEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCC
Q psy3240 45 VGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKP 124 (274)
Q Consensus 45 VGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~ 124 (274)
+.|+|.|.+++++++.++.+|++++++++|...- ..++-+. +.+. ..+. +.+ .+.+
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e~~----------------~~~~~~~-~~~~----~~~~--~~~-~~~~ 56 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPERF----------------PEADEVI-CIPP----DDIL--EDL-EIDP 56 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CCC-----------------TTSSEEE-CSHH----HHHH--HHC--S-T
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcccc----------------CCCCccE-ecCh----HHHH--hcc-CCCC
Confidence 4689999999999999999999999999884311 1233322 2221 1111 112 3567
Q ss_pred CcEEEEcCCCchhcHHHHHhhhhhhhheeehhhccccc
Q psy3240 125 GAILINTSRGQLVDQEALIDFIADIRVISISMVTNEKH 162 (274)
Q Consensus 125 gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~~~~~ 162 (274)
++.+| +.++.-.|.++|...|+. ...|+.+....++
T Consensus 57 ~t~Vv-~th~h~~D~~~L~~~l~~-~~~YiG~lGS~~k 92 (136)
T PF13478_consen 57 NTAVV-MTHDHELDAEALEAALAS-PARYIGLLGSRRK 92 (136)
T ss_dssp T-EEE---S-CCCHHHHHHHHTTS-S-SEEEESS-HHH
T ss_pred CeEEE-EcCCchhHHHHHHHHHcC-CCCEEEeecCchH
Confidence 77766 888888999888887776 7888888877665
No 328
>PRK08223 hypothetical protein; Validated
Probab=95.60 E-value=0.05 Score=50.94 Aligned_cols=112 Identities=15% Similarity=0.165 Sum_probs=61.7
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHccCCCeEE-EEeCCCCChh--Hh-------hcCCccc-----CHHHHhcccCEEEE
Q psy3240 38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKF-LYTSRSKKPE--AD-------KRGAEHT-----NIDDLCKQSDFIII 102 (274)
Q Consensus 38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv-~~~~r~~~~~--a~-------~~g~~~~-----sl~ell~~aDvVil 102 (274)
..|++++|.|||+|.+|..+|+.|...|...+ ++|...-... -+ ..|-..+ .+.++-..+++...
T Consensus 23 ~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~ 102 (287)
T PRK08223 23 QRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAF 102 (287)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEE
Confidence 46999999999999999999999999888554 4444332221 11 1121111 23444456677666
Q ss_pred cCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcH-HHHHhhhhhhhheeehh
Q psy3240 103 TSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQ-EALIDFIADIRVISISM 156 (274)
Q Consensus 103 ~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde-~aL~~~L~~~~i~~~D~ 156 (274)
....++++. .++++ .--++||..----.+. ..+.+.-...++-++..
T Consensus 103 ~~~l~~~n~----~~ll~---~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~ 150 (287)
T PRK08223 103 PEGIGKENA----DAFLD---GVDVYVDGLDFFEFDARRLVFAACQQRGIPALTA 150 (287)
T ss_pred ecccCccCH----HHHHh---CCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEE
Confidence 666555431 12332 2346666642211122 23334444556655553
No 329
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=95.59 E-value=0.081 Score=52.19 Aligned_cols=110 Identities=10% Similarity=0.216 Sum_probs=72.8
Q ss_pred CCCCCEEEEEcc----ChHHHHHHHHHccCCC--eEEEEeCCCCChhHhhcCCcc-cCHHHHhcccCEEEEcCCCCcccH
Q psy3240 39 ALQNSTVGIVGC----GRIGLSVLEKLIPYKV--SKFLYTSRSKKPEADKRGAEH-TNIDDLCKQSDFIIITSALTPDTH 111 (274)
Q Consensus 39 ~L~gktVGIIGl----G~IG~~iA~~L~~~G~--~vv~~~~r~~~~~a~~~g~~~-~sl~ell~~aDvVil~lPlt~~T~ 111 (274)
-++=++|+|||. |++|..+.+.|+..|+ +++.++++.. .-.|... .+++|+-...|++++++|. +.+.
T Consensus 4 l~~p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~----~i~G~~~~~sl~~lp~~~Dlavi~vp~-~~~~ 78 (447)
T TIGR02717 4 LFNPKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAG----EILGVKAYPSVLEIPDPVDLAVIVVPA-KYVP 78 (447)
T ss_pred ccCCCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCC----ccCCccccCCHHHCCCCCCEEEEecCH-HHHH
Confidence 356789999999 8899999999998776 3444444322 1235544 3899998889999999994 4445
Q ss_pred HhccHHHHhcCCCCcE-EEEcCCCc-----hhcHHHHHhhhhhhhheeeh
Q psy3240 112 HLINRARLESMKPGAI-LINTSRGQ-----LVDQEALIDFIADIRVISIS 155 (274)
Q Consensus 112 ~li~~~~l~~mk~gai-lINv~RG~-----iVde~aL~~~L~~~~i~~~D 155 (274)
.++.+ .. ..+-.++ ++.-+-++ ...++++.+..++.|+.++.
T Consensus 79 ~~l~e-~~-~~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvlG 126 (447)
T TIGR02717 79 QVVEE-CG-EKGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLLG 126 (447)
T ss_pred HHHHH-HH-hcCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEEe
Confidence 55532 22 2343344 44333222 23467888888888887776
No 330
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=95.59 E-value=0.066 Score=50.35 Aligned_cols=116 Identities=20% Similarity=0.235 Sum_probs=77.8
Q ss_pred hhhccchhccCCCCccCCCC----------CCCCCCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChh----
Q psy3240 15 KYVSTPVSCRGEWKSWAPNF----------MCGPALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPE---- 79 (274)
Q Consensus 15 r~~~~~~~~~~~w~~~~~~~----------~~g~~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~---- 79 (274)
++.+-|+...|. ...+|.. ..| .+.|++|+++|= +++.++++..+..+|+++.+..+..-.+.
T Consensus 117 ~~~~vPVINag~-~~~HPtQaL~Dl~Ti~e~~g-~l~gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~ 194 (304)
T PRK00779 117 EYSTVPVINGLT-DLSHPCQILADLLTIYEHRG-SLKGLKVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEPDPEIV 194 (304)
T ss_pred HhCCCCEEeCCC-CCCChHHHHHHHHHHHHHhC-CcCCcEEEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCCCHHHH
Confidence 444666665554 3345531 123 489999999996 89999999999999997777666543321
Q ss_pred ---HhhcCCc--c-cCHHHHhcccCEEEEcC----CCCc---c-----cHHhccHHHHhcCCCCcEEEEcC
Q psy3240 80 ---ADKRGAE--H-TNIDDLCKQSDFIIITS----ALTP---D-----THHLINRARLESMKPGAILINTS 132 (274)
Q Consensus 80 ---a~~~g~~--~-~sl~ell~~aDvVil~l----Plt~---~-----T~~li~~~~l~~mk~gailINv~ 132 (274)
+...|.. . .+++++++.+|+|..-. .... + ...-++++.++.+|++++|.-+.
T Consensus 195 ~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~l~~~~~~~ivmHpl 265 (304)
T PRK00779 195 EKIAKETGASIEVTHDPKEAVKGADVVYTDVWVSMGQEAEAEERLKAFAPYQVNEELMALAKPDAIFMHCL 265 (304)
T ss_pred HHHHHHcCCeEEEEcCHHHHhCCCCEEEecCccccccchhHHHHHHHhcccCCCHHHHHhcCCCeEEecCC
Confidence 1224543 2 48999999999999852 1101 1 12235778898899999998875
No 331
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=95.55 E-value=0.025 Score=49.72 Aligned_cols=63 Identities=19% Similarity=0.202 Sum_probs=47.9
Q ss_pred EEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChh---HhhcCCcc--------cCHHHHhcccCEEEEcCCCC
Q psy3240 45 VGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPE---ADKRGAEH--------TNIDDLCKQSDFIIITSALT 107 (274)
Q Consensus 45 VGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~---a~~~g~~~--------~sl~ell~~aDvVil~lPlt 107 (274)
|.|+|. |.+|+.+++.|.+.+.++.+..+...... ....|++. .++.++++.+|.|++++|..
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~ 75 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPS 75 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCS
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcc
Confidence 678995 99999999999998888877776654322 23456642 14667899999999999954
No 332
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=95.55 E-value=0.044 Score=45.02 Aligned_cols=107 Identities=14% Similarity=0.165 Sum_probs=61.9
Q ss_pred EEEEEccChHHHHHHHHHccCCCe-EEEEeCCCCChh--H-------hhcCCccc-----CHHHHhcccCEEEEcCCCCc
Q psy3240 44 TVGIVGCGRIGLSVLEKLIPYKVS-KFLYTSRSKKPE--A-------DKRGAEHT-----NIDDLCKQSDFIIITSALTP 108 (274)
Q Consensus 44 tVGIIGlG~IG~~iA~~L~~~G~~-vv~~~~r~~~~~--a-------~~~g~~~~-----sl~ell~~aDvVil~lPlt~ 108 (274)
+|.|+|+|.+|..+|+.|...|.. ..++|+..-... . ...|...+ .+.++-+..++-......++
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~ 80 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE 80 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecCh
Confidence 589999999999999999999985 455555433222 1 11122111 12233333444333222211
Q ss_pred ccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhc
Q psy3240 109 DTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVT 158 (274)
Q Consensus 109 ~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~ 158 (274)
. .....+++--++|++.-. .-....+.+..+..++.++++-+
T Consensus 81 ~-------~~~~~~~~~diVi~~~d~-~~~~~~l~~~~~~~~i~~i~~~~ 122 (143)
T cd01483 81 D-------NLDDFLDGVDLVIDAIDN-IAVRRALNRACKELGIPVIDAGG 122 (143)
T ss_pred h-------hHHHHhcCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEcC
Confidence 1 113334666788887544 44566677777777888887666
No 333
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=95.54 E-value=0.29 Score=45.70 Aligned_cols=31 Identities=16% Similarity=0.469 Sum_probs=27.6
Q ss_pred CCCCCCCCEEEEEccChHHHHHHHHHccC----CC
Q psy3240 36 CGPALQNSTVGIVGCGRIGLSVLEKLIPY----KV 66 (274)
Q Consensus 36 ~g~~L~gktVGIIGlG~IG~~iA~~L~~~----G~ 66 (274)
.|..|...+|.|+|.|.-|-.+|+.+... |.
T Consensus 19 ~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~ 53 (279)
T cd05312 19 TGKPLSDQRILFLGAGSAGIGIADLIVSAMVREGL 53 (279)
T ss_pred hCCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCC
Confidence 46789999999999999999999999766 76
No 334
>PLN02527 aspartate carbamoyltransferase
Probab=95.50 E-value=0.084 Score=49.72 Aligned_cols=97 Identities=19% Similarity=0.292 Sum_probs=67.1
Q ss_pred CCCCCEEEEEccC---hHHHHHHHHHccC-CCeEEEEeCCCCCh--h----HhhcCCcc---cCHHHHhcccCEEEEcCC
Q psy3240 39 ALQNSTVGIVGCG---RIGLSVLEKLIPY-KVSKFLYTSRSKKP--E----ADKRGAEH---TNIDDLCKQSDFIIITSA 105 (274)
Q Consensus 39 ~L~gktVGIIGlG---~IG~~iA~~L~~~-G~~vv~~~~r~~~~--~----a~~~g~~~---~sl~ell~~aDvVil~lP 105 (274)
.+.|++|+++|-+ ++..+++..+..+ |+++.+..+..-.. . +.+.|... .++++.++.||+|....-
T Consensus 148 ~l~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~~ 227 (306)
T PLN02527 148 RLDGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESSDLMEVASKCDVLYQTRI 227 (306)
T ss_pred CcCCCEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEcCHHHHhCCCCEEEECCc
Confidence 4899999999965 6899999998887 89766666544211 1 22234432 389999999999999442
Q ss_pred CCc------c-c-----HHhccHHHHhcCCCCcEEEEcC-CCc
Q psy3240 106 LTP------D-T-----HHLINRARLESMKPGAILINTS-RGQ 135 (274)
Q Consensus 106 lt~------~-T-----~~li~~~~l~~mk~gailINv~-RG~ 135 (274)
-.+ . - ...++++.++..+++++|..+. ||.
T Consensus 228 q~e~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~ivmHclPRg~ 270 (306)
T PLN02527 228 QRERFGERIDLYEAARGKYIVDKKVMDVLPKHAVVMHPLPRLD 270 (306)
T ss_pred chhhhcchHHHHHHhCCCceECHHHHhccCCCCEEECCCCCcc
Confidence 100 0 1 1345778888899999988764 554
No 335
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=95.49 E-value=0.06 Score=50.24 Aligned_cols=88 Identities=22% Similarity=0.308 Sum_probs=54.8
Q ss_pred EEEEccChHHHHHHHHHccCC--CeEEEEeCCCCChhHhhc---------C-Ccc--cCHHHHhcccCEEEEcCCCCcc-
Q psy3240 45 VGIVGCGRIGLSVLEKLIPYK--VSKFLYTSRSKKPEADKR---------G-AEH--TNIDDLCKQSDFIIITSALTPD- 109 (274)
Q Consensus 45 VGIIGlG~IG~~iA~~L~~~G--~~vv~~~~r~~~~~a~~~---------g-~~~--~sl~ell~~aDvVil~lPlt~~- 109 (274)
|+|||.|.+|..+|..+...| .+.+++|.+......... . ... .+-.+.++.||+|+++......
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~~l~~aDiVIitag~p~~~ 80 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYADAADADIVVITAGAPRKP 80 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCHHHhCCCCEEEEcCCCCCCC
Confidence 589999999999999998777 356777765543321111 0 011 1214688999999999864221
Q ss_pred --cHH--------hcc--HHHHhcCCCCcEEEEcC
Q psy3240 110 --THH--------LIN--RARLESMKPGAILINTS 132 (274)
Q Consensus 110 --T~~--------li~--~~~l~~mk~gailINv~ 132 (274)
+|. ++. .+.+..-.|.+++|+++
T Consensus 81 ~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~s 115 (300)
T cd00300 81 GETRLDLINRNAPILRSVITNLKKYGPDAIILVVS 115 (300)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 221 111 12334445889999998
No 336
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=95.45 E-value=0.13 Score=49.79 Aligned_cols=107 Identities=12% Similarity=0.189 Sum_probs=68.0
Q ss_pred EEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-H----h--hcCCccc---CHHHHhcccCEEEEcCCCCcccHH-
Q psy3240 44 TVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-A----D--KRGAEHT---NIDDLCKQSDFIIITSALTPDTHH- 112 (274)
Q Consensus 44 tVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a----~--~~g~~~~---sl~ell~~aDvVil~lPlt~~T~~- 112 (274)
++.|||+|.+|.++|+.|+..|.++.+.|....... . . ..|+... + .+.+..+|+|+..--..+...-
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~-~~~~~~~d~vv~sp~i~~~~p~~ 79 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLH-LEDLNNADLVVKSPGIPPDHPLV 79 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCc-hHHhccCCEEEECCCCCCCCHHH
Confidence 478999999999999999999998888775543211 1 1 2365432 3 4566789988775433222221
Q ss_pred ---------hccH-HHHhc-CCCCcEEEEcCCCchhcHHHHHhhhhhhhh
Q psy3240 113 ---------LINR-ARLES-MKPGAILINTSRGQLVDQEALIDFIADIRV 151 (274)
Q Consensus 113 ---------li~~-~~l~~-mk~gailINv~RG~iVde~aL~~~L~~~~i 151 (274)
++.. +.+.. ++...+-|--+.|+.--..-+...|+..|.
T Consensus 80 ~~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~ 129 (433)
T TIGR01087 80 QAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAGL 129 (433)
T ss_pred HHHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcCC
Confidence 2222 23322 333455566667998888888887887664
No 337
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.44 E-value=0.076 Score=51.77 Aligned_cols=113 Identities=17% Similarity=0.204 Sum_probs=70.7
Q ss_pred CCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh--H-hh--cCCccc---CHHHHhcccCEEEEcCCCCccc
Q psy3240 39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--A-DK--RGAEHT---NIDDLCKQSDFIIITSALTPDT 110 (274)
Q Consensus 39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a-~~--~g~~~~---sl~ell~~aDvVil~lPlt~~T 110 (274)
++.++++.|+|.|.+|.++|+.|...|.++++++....... . .. .|+... ..++.+..+|+|+..--..+..
T Consensus 2 ~~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi~~~~ 81 (445)
T PRK04308 2 TFQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQ 81 (445)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCCCCCC
Confidence 46789999999999999999999999998777775443221 1 11 255432 1234556799988865443332
Q ss_pred HHh----------cc-HHHHhc-CC---CCcEEEEcCCCchhcHHHHHhhhhhhhh
Q psy3240 111 HHL----------IN-RARLES-MK---PGAILINTSRGQLVDQEALIDFIADIRV 151 (274)
Q Consensus 111 ~~l----------i~-~~~l~~-mk---~gailINv~RG~iVde~aL~~~L~~~~i 151 (274)
.-+ +. .+.+.. ++ ...+-|--+-|+.--..-+...|+..|.
T Consensus 82 p~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~ 137 (445)
T PRK04308 82 PDIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGL 137 (445)
T ss_pred HHHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcCC
Confidence 222 11 223333 32 2344455556888777777777877654
No 338
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=95.43 E-value=0.063 Score=49.81 Aligned_cols=83 Identities=16% Similarity=0.208 Sum_probs=67.2
Q ss_pred HHHHHHHHccCCCeEEEEeCCCCChh------HhhcCCccc-CHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCc
Q psy3240 54 GLSVLEKLIPYKVSKFLYTSRSKKPE------ADKRGAEHT-NIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGA 126 (274)
Q Consensus 54 G~~iA~~L~~~G~~vv~~~~r~~~~~------a~~~g~~~~-sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~ga 126 (274)
|..||-.+...|..++..++...... ....|++.+ +-.+.++.+.+.++-+|....|.++. ++.++.++.|+
T Consensus 33 Ga~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD~eaa~~~Ei~VLFTPFGk~T~~Ia-rei~~hvpEgA 111 (340)
T COG4007 33 GARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDDAEAAEHGEIHVLFTPFGKATFGIA-REILEHVPEGA 111 (340)
T ss_pred chHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCchhhhhcceEEEEecccchhhHHHH-HHHHhhCcCCc
Confidence 67888888889998888876654322 235688776 56688999999999999998998876 57899999999
Q ss_pred EEEEcCCCchh
Q psy3240 127 ILINTSRGQLV 137 (274)
Q Consensus 127 ilINv~RG~iV 137 (274)
++.|+.+.+.+
T Consensus 112 VicnTCT~sp~ 122 (340)
T COG4007 112 VICNTCTVSPV 122 (340)
T ss_pred EecccccCchh
Confidence 99999987765
No 339
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.40 E-value=0.062 Score=53.15 Aligned_cols=111 Identities=14% Similarity=0.208 Sum_probs=68.0
Q ss_pred CCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh--Hhh--cCCccc---CHHHHhcccCEEEEcCCCCcccHH
Q psy3240 40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--ADK--RGAEHT---NIDDLCKQSDFIIITSALTPDTHH 112 (274)
Q Consensus 40 L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a~~--~g~~~~---sl~ell~~aDvVil~lPlt~~T~~ 112 (274)
+.||+|+|+|+|.-|.+.|+.|+..|++++++|.+..... ..+ .+.... ...+.+.++|+|+..--..+...-
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~vV~SpgI~~~~p~ 85 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAALLVETEASAQRLAAFDVVVKSPGISPYRPE 85 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCEEEeCCCChHHccCCCEEEECCCCCCCCHH
Confidence 5689999999999999999999999998888875543211 111 122221 224566789988875432222211
Q ss_pred ----------hccHHH--Hhc-CC-----CCcEEEEcCCCchhcHHHHHhhhhhhh
Q psy3240 113 ----------LINRAR--LES-MK-----PGAILINTSRGQLVDQEALIDFIADIR 150 (274)
Q Consensus 113 ----------li~~~~--l~~-mk-----~gailINv~RG~iVde~aL~~~L~~~~ 150 (274)
++++-. +.. ++ +..+-|--+-|+.--..-+...|+..|
T Consensus 86 ~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g 141 (468)
T PRK04690 86 ALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRAAG 141 (468)
T ss_pred HHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHhcC
Confidence 233322 333 32 134445555688877777777777655
No 340
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=95.36 E-value=0.074 Score=50.87 Aligned_cols=88 Identities=19% Similarity=0.280 Sum_probs=60.4
Q ss_pred CCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCC-hh-HhhcCCccc----C---HHHHhcccCEEEEcCCCCcccH
Q psy3240 41 QNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKK-PE-ADKRGAEHT----N---IDDLCKQSDFIIITSALTPDTH 111 (274)
Q Consensus 41 ~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~-~~-a~~~g~~~~----s---l~ell~~aDvVil~lPlt~~T~ 111 (274)
.|++|.|.|.|.+|..+++.++.+|+++++.+....+ .. +++.|+... + +.+.....|+|+-++.....
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~lGa~~~i~~~~~~~v~~~~~~~D~vid~~G~~~~-- 255 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEAVGTMDFIIDTVSAEHA-- 255 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHhCCCcEEEcCcCHHHHHHhhCCCcEEEECCCcHHH--
Confidence 5899999999999999999999999977666655433 22 456676432 1 22233347999987753211
Q ss_pred HhccHHHHhcCCCCcEEEEcCC
Q psy3240 112 HLINRARLESMKPGAILINTSR 133 (274)
Q Consensus 112 ~li~~~~l~~mk~gailINv~R 133 (274)
+ ...++.++++..++.++-
T Consensus 256 --~-~~~~~~l~~~G~iv~vG~ 274 (375)
T PLN02178 256 --L-LPLFSLLKVSGKLVALGL 274 (375)
T ss_pred --H-HHHHHhhcCCCEEEEEcc
Confidence 1 245667888889888874
No 341
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=95.34 E-value=0.11 Score=45.33 Aligned_cols=92 Identities=18% Similarity=0.245 Sum_probs=60.9
Q ss_pred CCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCcc----c--CHHHH-----hcccCEEEEcCCCC
Q psy3240 40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEH----T--NIDDL-----CKQSDFIIITSALT 107 (274)
Q Consensus 40 L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~----~--sl~el-----l~~aDvVil~lPlt 107 (274)
..|++|.|.|.|.+|+.+++.++..|.++++.+++..+.. ....+... . +..+. -...|+++.+++..
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~ 212 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGGP 212 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCCH
Confidence 4688999999999999999999999987666655433322 33333321 1 12221 24589999887642
Q ss_pred cccHHhccHHHHhcCCCCcEEEEcCCCch
Q psy3240 108 PDTHHLINRARLESMKPGAILINTSRGQL 136 (274)
Q Consensus 108 ~~T~~li~~~~l~~mk~gailINv~RG~i 136 (274)
. .-...++.|+++..+++++....
T Consensus 213 ~-----~~~~~~~~l~~~G~~v~~~~~~~ 236 (271)
T cd05188 213 E-----TLAQALRLLRPGGRIVVVGGTSG 236 (271)
T ss_pred H-----HHHHHHHhcccCCEEEEEccCCC
Confidence 1 12345677888999998876543
No 342
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.33 E-value=0.098 Score=49.29 Aligned_cols=95 Identities=23% Similarity=0.354 Sum_probs=58.2
Q ss_pred CCEEEEEccChHHHHHHHHHccCCC--eEEEEeCCCCChh--Hh----hc---C---Ccc-cCHHHHhcccCEEEEcCCC
Q psy3240 42 NSTVGIVGCGRIGLSVLEKLIPYKV--SKFLYTSRSKKPE--AD----KR---G---AEH-TNIDDLCKQSDFIIITSAL 106 (274)
Q Consensus 42 gktVGIIGlG~IG~~iA~~L~~~G~--~vv~~~~r~~~~~--a~----~~---g---~~~-~sl~ell~~aDvVil~lPl 106 (274)
..||+|||.|.+|..+|..|...|. +.+++|.+..... +. .. . +.. .+.+ .++.||+|+++.-.
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~-~~~~adivvitaG~ 81 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYS-VTANSKVVIVTAGA 81 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHH-HhCCCCEEEECCCC
Confidence 3589999999999999998875554 4677776554332 11 11 1 111 2455 48999999996543
Q ss_pred C--c-ccHH-hc--cH-------HHHhcCCCCcEEEEcCCCchhcH
Q psy3240 107 T--P-DTHH-LI--NR-------ARLESMKPGAILINTSRGQLVDQ 139 (274)
Q Consensus 107 t--~-~T~~-li--~~-------~~l~~mk~gailINv~RG~iVde 139 (274)
. + .+|. ++ |. +.+..-.|.+++|+++ .++|.
T Consensus 82 ~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvs--NP~d~ 125 (312)
T cd05293 82 RQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVS--NPVDI 125 (312)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEcc--ChHHH
Confidence 1 1 2442 22 11 2344457889999998 44443
No 343
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.32 E-value=0.07 Score=51.70 Aligned_cols=92 Identities=15% Similarity=0.138 Sum_probs=59.1
Q ss_pred CCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-Hhhc--CCcc-----cCHH----HHhcccCEEEEcCCC
Q psy3240 39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKR--GAEH-----TNID----DLCKQSDFIIITSAL 106 (274)
Q Consensus 39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~--g~~~-----~sl~----ell~~aDvVil~lPl 106 (274)
.+..+++.|+|+|.+|+.+++.|...|..+++++....... ..+. +... .+.+ .-+.++|.|+++++.
T Consensus 228 ~~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~ 307 (453)
T PRK09496 228 EKPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTND 307 (453)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCC
Confidence 45679999999999999999999999998888876544322 2221 3321 1222 235689999998886
Q ss_pred CcccHHhccHHHHhcCCCCcEEEEcC
Q psy3240 107 TPDTHHLINRARLESMKPGAILINTS 132 (274)
Q Consensus 107 t~~T~~li~~~~l~~mk~gailINv~ 132 (274)
.. .+++-......+.+..+++-+.
T Consensus 308 ~~--~n~~~~~~~~~~~~~~ii~~~~ 331 (453)
T PRK09496 308 DE--ANILSSLLAKRLGAKKVIALVN 331 (453)
T ss_pred cH--HHHHHHHHHHHhCCCeEEEEEC
Confidence 43 3344333445555555655443
No 344
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=95.32 E-value=0.1 Score=49.00 Aligned_cols=94 Identities=18% Similarity=0.230 Sum_probs=67.5
Q ss_pred CCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChh----------HhhcCCc---ccCHHHHhcccCEEEEcC
Q psy3240 39 ALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPE----------ADKRGAE---HTNIDDLCKQSDFIIITS 104 (274)
Q Consensus 39 ~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~----------a~~~g~~---~~sl~ell~~aDvVil~l 104 (274)
.+.|.+|+++|= +++.++++..+..+|+++.+..+..-... +...|.. ..+++++++.+|+|..-.
T Consensus 145 ~l~g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~ 224 (304)
T TIGR00658 145 KLKGVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTHDPVEAVKGADVIYTDV 224 (304)
T ss_pred CCCCcEEEEEeCCCchHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcC
Confidence 489999999995 78999999999999997777665543321 1223432 248999999999999843
Q ss_pred --CCCc-----c-----cHHhccHHHHhcCCCCcEEEEcC
Q psy3240 105 --ALTP-----D-----THHLINRARLESMKPGAILINTS 132 (274)
Q Consensus 105 --Plt~-----~-----T~~li~~~~l~~mk~gailINv~ 132 (274)
.... + ....++++.++.+|+++++.-+.
T Consensus 225 w~~~~~~~~~~~~~~~~~~y~l~~~~l~~~~~~~ivmHpl 264 (304)
T TIGR00658 225 WVSMGEEDKKEERLKLFRPYQVNEELMELAKPEVIFMHCL 264 (304)
T ss_pred cccCccccccHHHHHHhcCCcCCHHHHhhcCCCCEEECCC
Confidence 1110 0 11246888999999999998875
No 345
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=95.26 E-value=0.018 Score=47.93 Aligned_cols=94 Identities=24% Similarity=0.347 Sum_probs=56.6
Q ss_pred CEEEEEcc-ChHHHHHHHHHccCC--CeEEEEeCCCCChh--Hhh-------cCC--c-ccCHHHHhcccCEEEEcCCC-
Q psy3240 43 STVGIVGC-GRIGLSVLEKLIPYK--VSKFLYTSRSKKPE--ADK-------RGA--E-HTNIDDLCKQSDFIIITSAL- 106 (274)
Q Consensus 43 ktVGIIGl-G~IG~~iA~~L~~~G--~~vv~~~~r~~~~~--a~~-------~g~--~-~~sl~ell~~aDvVil~lPl- 106 (274)
.||+|||. |.+|+.+|..|...+ -+.+.+|....... +.+ ... . .....+.+++||+|+++.-.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~~ 80 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGVP 80 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTSTS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecccc
Confidence 48999999 999999999987544 45667776643322 111 011 1 12567788999999998843
Q ss_pred -Cc-ccHH-hc--cH-------HHHhcCCCCcEEEEcCCCchhc
Q psy3240 107 -TP-DTHH-LI--NR-------ARLESMKPGAILINTSRGQLVD 138 (274)
Q Consensus 107 -t~-~T~~-li--~~-------~~l~~mk~gailINv~RG~iVd 138 (274)
.+ +++. ++ |. +.+.+..|.++++.++ .++|
T Consensus 81 ~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvt--NPvd 122 (141)
T PF00056_consen 81 RKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVT--NPVD 122 (141)
T ss_dssp SSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-S--SSHH
T ss_pred ccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeC--CcHH
Confidence 22 2221 22 11 1233345778888884 4455
No 346
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=95.26 E-value=0.045 Score=47.12 Aligned_cols=32 Identities=28% Similarity=0.309 Sum_probs=26.3
Q ss_pred EEEEEccChHHHHHHHHHccCCCe-EEEEeCCC
Q psy3240 44 TVGIVGCGRIGLSVLEKLIPYKVS-KFLYTSRS 75 (274)
Q Consensus 44 tVGIIGlG~IG~~iA~~L~~~G~~-vv~~~~r~ 75 (274)
+|+|||+|.+|..+|+.|...|.. ..++|...
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 589999999999999999988885 45566543
No 347
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.25 E-value=0.04 Score=52.78 Aligned_cols=83 Identities=24% Similarity=0.297 Sum_probs=55.6
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHccCCCeEE-EEeCCCCCh-------------------h-H-h---hc--CCc----
Q psy3240 38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKF-LYTSRSKKP-------------------E-A-D---KR--GAE---- 86 (274)
Q Consensus 38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv-~~~~r~~~~-------------------~-a-~---~~--g~~---- 86 (274)
..|++++|.|||+|.+|..+|+.|...|...+ ++|...-.. + + . +. .+.
T Consensus 24 ~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~ 103 (355)
T PRK05597 24 QSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVS 103 (355)
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEE
Confidence 46999999999999999999999998888554 444332110 0 0 0 00 111
Q ss_pred --c---cCHHHHhcccCEEEEcCCCCcccHHhccHHHHhc
Q psy3240 87 --H---TNIDDLCKQSDFIIITSALTPDTHHLINRARLES 121 (274)
Q Consensus 87 --~---~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~ 121 (274)
. .+..++++.+|+|+.++- +..++.+++....+.
T Consensus 104 ~~~i~~~~~~~~~~~~DvVvd~~d-~~~~r~~~n~~c~~~ 142 (355)
T PRK05597 104 VRRLTWSNALDELRDADVILDGSD-NFDTRHLASWAAARL 142 (355)
T ss_pred EeecCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHc
Confidence 1 124568899999999885 467777777654443
No 348
>PRK08328 hypothetical protein; Provisional
Probab=95.24 E-value=0.073 Score=47.92 Aligned_cols=37 Identities=27% Similarity=0.425 Sum_probs=31.2
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHccCCCeEE-EEeCC
Q psy3240 38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKF-LYTSR 74 (274)
Q Consensus 38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv-~~~~r 74 (274)
..|++++|.|+|+|.+|..+|+.|...|...+ ++|..
T Consensus 23 ~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D 60 (231)
T PRK08328 23 EKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ 60 (231)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 46899999999999999999999999998654 44433
No 349
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=95.22 E-value=0.066 Score=48.37 Aligned_cols=89 Identities=12% Similarity=0.097 Sum_probs=55.7
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh---HhhcCCccc--CH-HHHhcccCEEEEcCCCCcccH
Q psy3240 38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE---ADKRGAEHT--NI-DDLCKQSDFIIITSALTPDTH 111 (274)
Q Consensus 38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~---a~~~g~~~~--sl-~ell~~aDvVil~lPlt~~T~ 111 (274)
-+++|++|.|||-|.++..=++.|..+|+++.++.+...... +....+.+. +. .+-+..+++|+.++...+
T Consensus 21 l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~dl~g~~LViaATdD~~--- 97 (223)
T PRK05562 21 LLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDKEFIKDKHLIVIATDDEK--- 97 (223)
T ss_pred EECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCcEEEECCCCHH---
Confidence 468899999999999999999999999998777776554322 111122221 11 234577888888876432
Q ss_pred HhccHHHHhcCCCCcEEEEc
Q psy3240 112 HLINRARLESMKPGAILINT 131 (274)
Q Consensus 112 ~li~~~~l~~mk~gailINv 131 (274)
+|.......+.-.+++|+
T Consensus 98 --vN~~I~~~a~~~~~lvn~ 115 (223)
T PRK05562 98 --LNNKIRKHCDRLYKLYID 115 (223)
T ss_pred --HHHHHHHHHHHcCCeEEE
Confidence 333333334433345554
No 350
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=95.22 E-value=0.13 Score=47.81 Aligned_cols=107 Identities=19% Similarity=0.143 Sum_probs=73.5
Q ss_pred CCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccC-HHHHhcccCEEEEcCCCCcccH---------
Q psy3240 42 NSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTN-IDDLCKQSDFIIITSALTPDTH--------- 111 (274)
Q Consensus 42 gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~s-l~ell~~aDvVil~lPlt~~T~--------- 111 (274)
|++++|||--.=-..+++.|...|+++.+|--...... -.|+...+ .++.++++|+|++-+|.+....
T Consensus 1 ~~~~~v~ggd~r~~~~~~~l~~~g~~v~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~i~~~~~~~ 78 (287)
T TIGR02853 1 GIHIAVIGGDARQLELIRKLEELDAKISLIGFDQLEDG--FTGAVKCELLELDLTTLDVVILPVPGTSHDGKVATVFSNE 78 (287)
T ss_pred CcEEEEEcccHHHHHHHHHHHHCCCEEEEEeccccccc--cccceeecchhhhhccCCEEEECCccccCCceEecccccC
Confidence 68999999888889999999999998766642211110 12555544 4556899999999999665421
Q ss_pred -HhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeeh
Q psy3240 112 -HLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISIS 155 (274)
Q Consensus 112 -~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D 155 (274)
-.++++.+++|+++++ +-+|. +..++-+..+++|+..+|
T Consensus 79 ~~~l~~~~l~~~~~~~~-~~~G~----~~~~l~~~a~~~gi~v~~ 118 (287)
T TIGR02853 79 KVVLTPELLESTKGHCT-IYVGI----SNPYLEQLAADAGVKLIE 118 (287)
T ss_pred CccccHHHHHhcCCCCE-EEEec----CCHHHHHHHHHCCCeEEE
Confidence 1246789999997654 44553 444444466678888885
No 351
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.21 E-value=0.042 Score=52.88 Aligned_cols=36 Identities=19% Similarity=0.281 Sum_probs=30.5
Q ss_pred CCCCCEEEEEccChHHHHHHHHHccCCCeEE-EEeCC
Q psy3240 39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKF-LYTSR 74 (274)
Q Consensus 39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv-~~~~r 74 (274)
.|++++|.|+|+|.+|..+|+.|...|...+ ++|+.
T Consensus 132 ~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 132 RLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred HHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 5899999999999999999999999998544 44443
No 352
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=95.21 E-value=0.053 Score=51.39 Aligned_cols=87 Identities=17% Similarity=0.230 Sum_probs=51.8
Q ss_pred CCEEEEEc-cChHHHHHHHHHccCCCe---EEEEeCCCCChh-HhhcCC--cccCHH-HHhcccCEEEEcCCCCcccHHh
Q psy3240 42 NSTVGIVG-CGRIGLSVLEKLIPYKVS---KFLYTSRSKKPE-ADKRGA--EHTNID-DLCKQSDFIIITSALTPDTHHL 113 (274)
Q Consensus 42 gktVGIIG-lG~IG~~iA~~L~~~G~~---vv~~~~r~~~~~-a~~~g~--~~~sl~-ell~~aDvVil~lPlt~~T~~l 113 (274)
+++|+|+| .|.+|+.+++.|...+.. .....++..... ..-.+. ...+++ +.++.+|+|++++|.. .++.+
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~g~g-~s~~~ 79 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSAGGS-VSKKY 79 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECCChH-HHHHH
Confidence 46899999 599999999999885543 233333322111 111111 122222 3457899999999853 33333
Q ss_pred ccHHHHhcCCCCcEEEEcCC
Q psy3240 114 INRARLESMKPGAILINTSR 133 (274)
Q Consensus 114 i~~~~l~~mk~gailINv~R 133 (274)
.. +. ++.|+.+||.|.
T Consensus 80 ~~-~~---~~~G~~VIDlS~ 95 (334)
T PRK14874 80 AP-KA---AAAGAVVIDNSS 95 (334)
T ss_pred HH-HH---HhCCCEEEECCc
Confidence 21 22 357889999874
No 353
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=95.21 E-value=0.085 Score=50.30 Aligned_cols=94 Identities=17% Similarity=0.244 Sum_probs=65.6
Q ss_pred CCCCCEEEEEccC--hHHHHHHHHHccCCCeEEEEeCCCCChh----------HhhcCCcc---cCHHHHhcccCEEEEc
Q psy3240 39 ALQNSTVGIVGCG--RIGLSVLEKLIPYKVSKFLYTSRSKKPE----------ADKRGAEH---TNIDDLCKQSDFIIIT 103 (274)
Q Consensus 39 ~L~gktVGIIGlG--~IG~~iA~~L~~~G~~vv~~~~r~~~~~----------a~~~g~~~---~sl~ell~~aDvVil~ 103 (274)
.+.|++|++||-+ ++.++++..+..+|+++.+..+..-.+. +...|... .+++++++.+|+|..-
T Consensus 152 ~l~g~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~ 231 (331)
T PRK02102 152 PLKGLKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITEDPEEAVKGADVIYTD 231 (331)
T ss_pred CCCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence 4899999999987 8999999999999997766665443221 12235432 3899999999999985
Q ss_pred CCCC---c----c-----cHHhccHHHHh-cCCCCcEEEEcC
Q psy3240 104 SALT---P----D-----THHLINRARLE-SMKPGAILINTS 132 (274)
Q Consensus 104 lPlt---~----~-----T~~li~~~~l~-~mk~gailINv~ 132 (274)
+=.. + + ...-++++.++ .+|++++|.-+.
T Consensus 232 ~w~~~~~~~~~~~~~~~~~~y~vt~ell~~~~~~d~ivmH~l 273 (331)
T PRK02102 232 VWVSMGEEDEWEERIKLLKPYQVNMDLMKATGNPDVIFMHCL 273 (331)
T ss_pred CcccCccccchHHHHHhccCCcCCHHHHhhhcCCCCEEECCC
Confidence 3110 0 1 11235777888 478898888765
No 354
>PRK05086 malate dehydrogenase; Provisional
Probab=95.20 E-value=0.19 Score=47.35 Aligned_cols=91 Identities=18% Similarity=0.277 Sum_probs=54.2
Q ss_pred CEEEEEcc-ChHHHHHHHHHc---cCCCeEEEEeCCCCCh----hHhhcC--C--c---ccCHHHHhcccCEEEEcCCCC
Q psy3240 43 STVGIVGC-GRIGLSVLEKLI---PYKVSKFLYTSRSKKP----EADKRG--A--E---HTNIDDLCKQSDFIIITSALT 107 (274)
Q Consensus 43 ktVGIIGl-G~IG~~iA~~L~---~~G~~vv~~~~r~~~~----~a~~~g--~--~---~~sl~ell~~aDvVil~lPlt 107 (274)
++|+|||. |.||+.+|..++ ..+...+.++.+.... +..... . . ..++.+.++.+|+|++++-..
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~~ 80 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGVA 80 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCCC
Confidence 58999999 999999998773 3444456666543221 111111 1 1 125567889999999988642
Q ss_pred cc---cHH-hcc------HH---HHhcCCCCcEEEEcCC
Q psy3240 108 PD---THH-LIN------RA---RLESMKPGAILINTSR 133 (274)
Q Consensus 108 ~~---T~~-li~------~~---~l~~mk~gailINv~R 133 (274)
.. ++. ++. .+ .+..-.+.+++++++-
T Consensus 81 ~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsN 119 (312)
T PRK05086 81 RKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITN 119 (312)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 21 111 121 12 3333467889999863
No 355
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=95.17 E-value=0.051 Score=52.45 Aligned_cols=82 Identities=22% Similarity=0.265 Sum_probs=55.3
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHccCCCeE-EEEeCCCCC-------------------hh-H----hhc--CCc--c-
Q psy3240 38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSK-FLYTSRSKK-------------------PE-A----DKR--GAE--H- 87 (274)
Q Consensus 38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~v-v~~~~r~~~-------------------~~-a----~~~--g~~--~- 87 (274)
..|++++|.|||+|.+|..+|+.|...|... .++|...-. .+ + .+. .+. .
T Consensus 37 ~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~ 116 (370)
T PRK05600 37 ERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNAL 116 (370)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEe
Confidence 5799999999999999999999999988744 445443110 00 0 011 111 1
Q ss_pred ------cCHHHHhcccCEEEEcCCCCcccHHhccHHHHh
Q psy3240 88 ------TNIDDLCKQSDFIIITSALTPDTHHLINRARLE 120 (274)
Q Consensus 88 ------~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~ 120 (274)
.+.+++++++|+|+.|+- +.+++.++++....
T Consensus 117 ~~~i~~~~~~~~~~~~DlVid~~D-n~~~r~~in~~~~~ 154 (370)
T PRK05600 117 RERLTAENAVELLNGVDLVLDGSD-SFATKFLVADAAEI 154 (370)
T ss_pred eeecCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHH
Confidence 135578899999988875 56788888765443
No 356
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=95.17 E-value=0.11 Score=51.13 Aligned_cols=94 Identities=17% Similarity=0.283 Sum_probs=66.4
Q ss_pred CCCCCEEEEEcc---ChHHHHHHHHHccC-CCeEEEEeCCCCCh-h-----HhhcCCc--c-cCHHHHhcccCEEEEcCC
Q psy3240 39 ALQNSTVGIVGC---GRIGLSVLEKLIPY-KVSKFLYTSRSKKP-E-----ADKRGAE--H-TNIDDLCKQSDFIIITSA 105 (274)
Q Consensus 39 ~L~gktVGIIGl---G~IG~~iA~~L~~~-G~~vv~~~~r~~~~-~-----a~~~g~~--~-~sl~ell~~aDvVil~lP 105 (274)
.+.|+||+++|- +++..+++..+..+ |+++++..+..-.. . +.+.|.. . .+++|+++.+|+|....-
T Consensus 238 ~l~G~kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~eav~~ADVVYt~~~ 317 (429)
T PRK11891 238 IVDGAHIALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTDDLAAGLRGADVVYATRI 317 (429)
T ss_pred CcCCCEEEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcCc
Confidence 589999999998 59999999998776 99777766654322 1 1223433 2 489999999999998542
Q ss_pred CCcc----------cHHhccHHHHhc-CCCCcEEEEcC
Q psy3240 106 LTPD----------THHLINRARLES-MKPGAILINTS 132 (274)
Q Consensus 106 lt~~----------T~~li~~~~l~~-mk~gailINv~ 132 (274)
-.+. ....++++.++. .|++++|.-+.
T Consensus 318 q~er~~~~~~~~~~~~y~vt~ell~~~ak~dai~MHcL 355 (429)
T PRK11891 318 QKERFADESFEGYTPDFQINQALVDAVCKPDTLIMHPL 355 (429)
T ss_pred hhhcccCHHHHHhccCCcCCHHHHhCccCCCcEEECCC
Confidence 1111 012357888988 89999998753
No 357
>CHL00194 ycf39 Ycf39; Provisional
Probab=95.16 E-value=0.12 Score=47.73 Aligned_cols=63 Identities=17% Similarity=0.211 Sum_probs=44.8
Q ss_pred CEEEEEc-cChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCcc--------cCHHHHhcccCEEEEcCC
Q psy3240 43 STVGIVG-CGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEH--------TNIDDLCKQSDFIIITSA 105 (274)
Q Consensus 43 ktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~--------~sl~ell~~aDvVil~lP 105 (274)
++|.|.| .|.+|+.+++.|...|.++++..++..+.. ....+++. .++.++++.+|+|+.+.+
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 4799999 599999999999999998777765543222 12234322 145677899999988754
No 358
>PRK06392 homoserine dehydrogenase; Provisional
Probab=95.13 E-value=0.12 Score=49.09 Aligned_cols=108 Identities=18% Similarity=0.314 Sum_probs=60.2
Q ss_pred EEEEEccChHHHHHHHHHcc--------CCCeEEEEeCCCCC----h-----hH---hhcC----C--cccCHHHHh-cc
Q psy3240 44 TVGIVGCGRIGLSVLEKLIP--------YKVSKFLYTSRSKK----P-----EA---DKRG----A--EHTNIDDLC-KQ 96 (274)
Q Consensus 44 tVGIIGlG~IG~~iA~~L~~--------~G~~vv~~~~r~~~----~-----~a---~~~g----~--~~~sl~ell-~~ 96 (274)
+|+|+|+|++|+.+++.|.. .+.+++...++... . .. .+.+ . ...++++++ .+
T Consensus 2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~~ 81 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEIK 81 (326)
T ss_pred EEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcCC
Confidence 79999999999999999865 45665554443321 0 00 1101 1 111456654 46
Q ss_pred cCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchh-cHHHHHhhhhhhhhe
Q psy3240 97 SDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLV-DQEALIDFIADIRVI 152 (274)
Q Consensus 97 aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iV-de~aL~~~L~~~~i~ 152 (274)
+|+|+=|+|....-.... .-..+.|+.|.-+|-.+-+.+. .-+.|.+..++.|..
T Consensus 82 ~DVvVE~t~~~~~g~~~~-~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~ 137 (326)
T PRK06392 82 PDVIVDVTPASKDGIREK-NLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRI 137 (326)
T ss_pred CCEEEECCCCCCcCchHH-HHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCe
Confidence 899999998542211111 1123345667777766655554 344555544444443
No 359
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=95.12 E-value=0.095 Score=48.48 Aligned_cols=89 Identities=26% Similarity=0.303 Sum_probs=58.4
Q ss_pred CCCCEEEEEccChHHHHHHHHHccCCCe-EEEEeCCCCChh-HhhcCCccc-C-----HH---HHhc--ccCEEEEcCCC
Q psy3240 40 LQNSTVGIVGCGRIGLSVLEKLIPYKVS-KFLYTSRSKKPE-ADKRGAEHT-N-----ID---DLCK--QSDFIIITSAL 106 (274)
Q Consensus 40 L~gktVGIIGlG~IG~~iA~~L~~~G~~-vv~~~~r~~~~~-a~~~g~~~~-s-----l~---ell~--~aDvVil~lPl 106 (274)
..|.+|.|+|.|.+|..+++.++.+|++ +++.+.+..+.. +.+.|+... + .+ ++.. ..|+|+-++..
T Consensus 162 ~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~g~ 241 (339)
T cd08239 162 SGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIECSGN 241 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEECCCC
Confidence 3489999999999999999999999997 555444333333 555665321 1 11 2222 47888887653
Q ss_pred CcccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240 107 TPDTHHLINRARLESMKPGAILINTSR 133 (274)
Q Consensus 107 t~~T~~li~~~~l~~mk~gailINv~R 133 (274)
.. .+ ...++.++++..++.++.
T Consensus 242 ~~----~~-~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 242 TA----AR-RLALEAVRPWGRLVLVGE 263 (339)
T ss_pred HH----HH-HHHHHHhhcCCEEEEEcC
Confidence 21 11 345667888888888765
No 360
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=95.10 E-value=0.097 Score=49.76 Aligned_cols=89 Identities=27% Similarity=0.406 Sum_probs=60.8
Q ss_pred CCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCC-Chh-Hhh-cCCccc-CH-H--------HHh--cccCEEEEcCC
Q psy3240 41 QNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSK-KPE-ADK-RGAEHT-NI-D--------DLC--KQSDFIIITSA 105 (274)
Q Consensus 41 ~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~-~~~-a~~-~g~~~~-sl-~--------ell--~~aDvVil~lP 105 (274)
.+.+|.|+|.|.||...++.++.+|+..++..++.+ +.+ +++ .+.... +. + ++- ..+|+++-|+.
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G 247 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG 247 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC
Confidence 334999999999999999999999987766655544 333 555 444432 11 1 222 24899999997
Q ss_pred CCcccHHhccHHHHhcCCCCcEEEEcCCC
Q psy3240 106 LTPDTHHLINRARLESMKPGAILINTSRG 134 (274)
Q Consensus 106 lt~~T~~li~~~~l~~mk~gailINv~RG 134 (274)
. +. .+ .+.++.++++..++.+|-.
T Consensus 248 ~-~~---~~-~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 248 S-PP---AL-DQALEALRPGGTVVVVGVY 271 (350)
T ss_pred C-HH---HH-HHHHHHhcCCCEEEEEecc
Confidence 2 22 12 3567778999999888753
No 361
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.10 E-value=0.074 Score=46.49 Aligned_cols=38 Identities=11% Similarity=0.190 Sum_probs=32.2
Q ss_pred CCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCC
Q psy3240 39 ALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSK 76 (274)
Q Consensus 39 ~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~ 76 (274)
+++++++.|+|. |.||+.+++.|...|+++++.+++..
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~ 40 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEE 40 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 578999999995 89999999999999998777766543
No 362
>KOG2741|consensus
Probab=95.10 E-value=0.23 Score=47.59 Aligned_cols=112 Identities=16% Similarity=0.221 Sum_probs=73.7
Q ss_pred CEEEEEccChHHHHHHHHHcc---CCCeEEEEeCCCCChh---HhhcCC--cc--cCHHHHhccc--CEEEEcCCCCccc
Q psy3240 43 STVGIVGCGRIGLSVLEKLIP---YKVSKFLYTSRSKKPE---ADKRGA--EH--TNIDDLCKQS--DFIIITSALTPDT 110 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~~L~~---~G~~vv~~~~r~~~~~---a~~~g~--~~--~sl~ell~~a--DvVil~lPlt~~T 110 (274)
-++||+|+|.|++..++.|.. .+.+++...+++.... +...++ .. -+.+|+++.. |+|.+..|.....
T Consensus 7 ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~~~~k~y~syEeLakd~~vDvVyi~~~~~qH~ 86 (351)
T KOG2741|consen 7 IRWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNIPNPKAYGSYEELAKDPEVDVVYISTPNPQHY 86 (351)
T ss_pred eEEEEeehhHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcCCCCCccccCHHHHhcCCCcCEEEeCCCCccHH
Confidence 479999999999999999974 3666666666544332 555666 22 3899999865 9999988864433
Q ss_pred HHhccHHHHhcCCCCcEEEEcCCCc-hhcHHHHHhhhhhhhheeehhhc
Q psy3240 111 HHLINRARLESMKPGAILINTSRGQ-LVDQEALIDFIADIRVISISMVT 158 (274)
Q Consensus 111 ~~li~~~~l~~mk~gailINv~RG~-iVde~aL~~~L~~~~i~~~D~~~ 158 (274)
+-.. ..+.. .-.+|+.---.- +-+.+.++++-+++|+.++|-.-
T Consensus 87 evv~--l~l~~--~K~VL~EKPla~n~~e~~~iveaA~~rgv~~meg~~ 131 (351)
T KOG2741|consen 87 EVVM--LALNK--GKHVLCEKPLAMNVAEAEEIVEAAEARGVFFMEGLW 131 (351)
T ss_pred HHHH--HHHHc--CCcEEecccccCCHHHHHHHHHHHHHcCcEEEeeee
Confidence 3222 23332 233666544322 23666888888888888877443
No 363
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.10 E-value=0.085 Score=51.28 Aligned_cols=112 Identities=18% Similarity=0.177 Sum_probs=67.6
Q ss_pred CCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh--HhhcCCccc---CHHHHhcccCEEEEcCCCCcccHHh
Q psy3240 39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--ADKRGAEHT---NIDDLCKQSDFIIITSALTPDTHHL 113 (274)
Q Consensus 39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a~~~g~~~~---sl~ell~~aDvVil~lPlt~~T~~l 113 (274)
++.+++|.|+|+|..|.+.++.|+..|.++.++|....... ..+.|+... ...+.++..|+|+. -|.-+.....
T Consensus 3 ~~~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~d~vv~-spgi~~~~~~ 81 (438)
T PRK03806 3 DYQGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKLPENVERHTGSLNDEWLLAADLIVA-SPGIALAHPS 81 (438)
T ss_pred ccCCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHHhcCCEEEeCCCCHHHhcCCCEEEE-CCCCCCCCHH
Confidence 56789999999999999999999999998777775443321 122355432 22345677886655 4433322221
Q ss_pred -----------ccH-HHHhcC-CCCcEEEEcCCCchhcHHHHHhhhhhhhh
Q psy3240 114 -----------INR-ARLESM-KPGAILINTSRGQLVDQEALIDFIADIRV 151 (274)
Q Consensus 114 -----------i~~-~~l~~m-k~gailINv~RG~iVde~aL~~~L~~~~i 151 (274)
+.. +.+..+ +...+-|--+.|+.--..-|...|+..|.
T Consensus 82 ~~~a~~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~g~ 132 (438)
T PRK03806 82 LSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGW 132 (438)
T ss_pred HHHHHHCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHHcCC
Confidence 221 233332 22234444456887777777777776553
No 364
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=95.08 E-value=0.068 Score=50.02 Aligned_cols=88 Identities=19% Similarity=0.235 Sum_probs=55.1
Q ss_pred CCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc----C-----HHHHhc------ccC----EE
Q psy3240 41 QNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT----N-----IDDLCK------QSD----FI 100 (274)
Q Consensus 41 ~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~----s-----l~ell~------~aD----vV 100 (274)
.|.+|.|.|.|.||..+++.++..|.++++.+.+..+.. +++.|+... + +.+.+. ..| +|
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~~d~v 245 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAKARGLRSTGWKI 245 (349)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceEecCccccHHHHHHHHHhhcccCCCCCCcCEE
Confidence 489999999999999999999999997655554443333 555665321 1 111121 133 66
Q ss_pred EEcCCCCcccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240 101 IITSALTPDTHHLINRARLESMKPGAILINTSR 133 (274)
Q Consensus 101 il~lPlt~~T~~li~~~~l~~mk~gailINv~R 133 (274)
+-++..... + ...++.++++..++.++.
T Consensus 246 ~d~~g~~~~----~-~~~~~~l~~~G~iv~~G~ 273 (349)
T TIGR03201 246 FECSGSKPG----Q-ESALSLLSHGGTLVVVGY 273 (349)
T ss_pred EECCCChHH----H-HHHHHHHhcCCeEEEECc
Confidence 665543211 1 234666788888888775
No 365
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=95.08 E-value=0.15 Score=48.64 Aligned_cols=94 Identities=18% Similarity=0.277 Sum_probs=65.3
Q ss_pred CCCCCEEEEEccC--hHHHHHHHHHccCCCeEEEEeCCCCChh----------HhhcCCc--c-cCHHHHhcccCEEEEc
Q psy3240 39 ALQNSTVGIVGCG--RIGLSVLEKLIPYKVSKFLYTSRSKKPE----------ADKRGAE--H-TNIDDLCKQSDFIIIT 103 (274)
Q Consensus 39 ~L~gktVGIIGlG--~IG~~iA~~L~~~G~~vv~~~~r~~~~~----------a~~~g~~--~-~sl~ell~~aDvVil~ 103 (274)
.+.|++|++||=+ ++.++++..+..+|+++.+..+..-.+. +...|.. . .+++++++.+|+|..-
T Consensus 152 ~l~g~kia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvy~~ 231 (332)
T PRK04284 152 PYKDIKFTYVGDGRNNVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITDDIDEGVKGSDVIYTD 231 (332)
T ss_pred CcCCcEEEEecCCCcchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEC
Confidence 5899999999974 8899999999999997777666532211 1234532 2 3899999999999994
Q ss_pred CCCC--c------c-----cHHhccHHHHhcCC-CCcEEEEcC
Q psy3240 104 SALT--P------D-----THHLINRARLESMK-PGAILINTS 132 (274)
Q Consensus 104 lPlt--~------~-----T~~li~~~~l~~mk-~gailINv~ 132 (274)
.=.. . + ....++++.++.++ |+++|.-+.
T Consensus 232 ~w~~~~~~~~~~~~~~~~~~~y~v~~e~l~~a~~~~~ivmHpl 274 (332)
T PRK04284 232 VWVSMGEPDEVWEERIKLLKPYQVNKEMMKKTGNPNAIFEHCL 274 (332)
T ss_pred CcccCccchhhHHHHHHhccCCcCCHHHHhhcCCCCcEEECCC
Confidence 2110 0 0 11235778888886 588888775
No 366
>PRK06349 homoserine dehydrogenase; Provisional
Probab=95.08 E-value=0.08 Score=51.92 Aligned_cols=65 Identities=20% Similarity=0.254 Sum_probs=41.0
Q ss_pred CEEEEEccChHHHHHHHHHccC----------CCeEEEEeCCCCCh-h-HhhcCCcc-cCHHHHhc--ccCEEEEcCCCC
Q psy3240 43 STVGIVGCGRIGLSVLEKLIPY----------KVSKFLYTSRSKKP-E-ADKRGAEH-TNIDDLCK--QSDFIIITSALT 107 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~~L~~~----------G~~vv~~~~r~~~~-~-a~~~g~~~-~sl~ell~--~aDvVil~lPlt 107 (274)
.+|||+|+|.||+.+++.|... +.+++...++.... . ....+... .++++++. +.|+|+.+++..
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg~~ 83 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMGGI 83 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCCCc
Confidence 5799999999999999887432 34444443333221 1 11112222 37899985 479999988753
No 367
>PLN02602 lactate dehydrogenase
Probab=95.07 E-value=0.12 Score=49.69 Aligned_cols=95 Identities=22% Similarity=0.357 Sum_probs=58.2
Q ss_pred CEEEEEccChHHHHHHHHHccCCC--eEEEEeCCCCChh--Hhh--c-----C-Ccc---cCHHHHhcccCEEEEcCCCC
Q psy3240 43 STVGIVGCGRIGLSVLEKLIPYKV--SKFLYTSRSKKPE--ADK--R-----G-AEH---TNIDDLCKQSDFIIITSALT 107 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~~L~~~G~--~vv~~~~r~~~~~--a~~--~-----g-~~~---~sl~ell~~aDvVil~lPlt 107 (274)
++|+|||.|.+|..+|-.|...+. +.+.+|....... +.+ . + ... .+. +.+++||+|+++.-..
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy-~~~~daDiVVitAG~~ 116 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDY-AVTAGSDLCIVTAGAR 116 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCH-HHhCCCCEEEECCCCC
Confidence 699999999999999998875554 4667776554332 111 1 1 111 133 4589999999985432
Q ss_pred c---ccHH-hc--cH-------HHHhcCCCCcEEEEcCCCchhcHH
Q psy3240 108 P---DTHH-LI--NR-------ARLESMKPGAILINTSRGQLVDQE 140 (274)
Q Consensus 108 ~---~T~~-li--~~-------~~l~~mk~gailINv~RG~iVde~ 140 (274)
. .+|- ++ |. +.+....|.+++|+++ .++|.-
T Consensus 117 ~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvt--NPvdv~ 160 (350)
T PLN02602 117 QIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVS--NPVDVL 160 (350)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec--CchHHH
Confidence 1 2332 22 11 2344456889999998 444433
No 368
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=95.06 E-value=0.029 Score=53.66 Aligned_cols=83 Identities=20% Similarity=0.306 Sum_probs=48.7
Q ss_pred EEEEccChHHHHHHHHHccCCC--eEEEEeCCCCChh-H-hh---cCCcc--------cCHHHHhcccCEEEEcCCCCcc
Q psy3240 45 VGIVGCGRIGLSVLEKLIPYKV--SKFLYTSRSKKPE-A-DK---RGAEH--------TNIDDLCKQSDFIIITSALTPD 109 (274)
Q Consensus 45 VGIIGlG~IG~~iA~~L~~~G~--~vv~~~~r~~~~~-a-~~---~g~~~--------~sl~ell~~aDvVil~lPlt~~ 109 (274)
|+|+|.|.+|+.+++.|...+- ++++.+++..+.. . .. ..+.. .++.++++++|+|+.|+|.. .
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~-~ 79 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF-F 79 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG-G
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc-h
Confidence 7899999999999999987664 4556665544433 1 11 11111 14678999999999999854 2
Q ss_pred cHHhccHHHHhcCCCCcEEEEcC
Q psy3240 110 THHLINRARLESMKPGAILINTS 132 (274)
Q Consensus 110 T~~li~~~~l~~mk~gailINv~ 132 (274)
...++ +. .++.|.-.||++
T Consensus 80 ~~~v~-~~---~i~~g~~yvD~~ 98 (386)
T PF03435_consen 80 GEPVA-RA---CIEAGVHYVDTS 98 (386)
T ss_dssp HHHHH-HH---HHHHT-EEEESS
T ss_pred hHHHH-HH---HHHhCCCeeccc
Confidence 22222 11 134567778844
No 369
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=95.05 E-value=0.067 Score=52.22 Aligned_cols=70 Identities=6% Similarity=0.097 Sum_probs=52.4
Q ss_pred CCCCCCCEEEEEcc----------ChHHHHHHHHHccCC-CeEEEEeCCCCChhH-hhcCCcccCHHHHhcccCEEEEcC
Q psy3240 37 GPALQNSTVGIVGC----------GRIGLSVLEKLIPYK-VSKFLYTSRSKKPEA-DKRGAEHTNIDDLCKQSDFIIITS 104 (274)
Q Consensus 37 g~~L~gktVGIIGl----------G~IG~~iA~~L~~~G-~~vv~~~~r~~~~~a-~~~g~~~~sl~ell~~aDvVil~l 104 (274)
+.++.|++|+|+|+ ..-...+++.|+..| +++.+||+....... ........+++|.++.||+|++++
T Consensus 315 ~~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L~~~gg~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t 394 (415)
T PRK11064 315 DKRASEVKIACFGLAFKPNIDDLRESPAMEIAELIAQWHSGETLVVEPNIHQLPKKLDGLVTLVSLDEALATADVLVMLV 394 (415)
T ss_pred ccCcCCCEEEEEeeEECCCCcchhhChHHHHHHHHHhcCCcEEEEECCCCCchhhhccCceeeCCHHHHHhCCCEEEECC
Confidence 46789999999998 457789999999996 987888876432211 111223458999999999999988
Q ss_pred CC
Q psy3240 105 AL 106 (274)
Q Consensus 105 Pl 106 (274)
+-
T Consensus 395 ~~ 396 (415)
T PRK11064 395 DH 396 (415)
T ss_pred CC
Confidence 75
No 370
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=95.04 E-value=0.086 Score=50.36 Aligned_cols=95 Identities=21% Similarity=0.268 Sum_probs=65.0
Q ss_pred CCCCCCEEEEEccC--hHHHHHHHHHccCCCeEEEEeCCCCChh----------HhhcCCc--c-cCHHHHhcccCEEEE
Q psy3240 38 PALQNSTVGIVGCG--RIGLSVLEKLIPYKVSKFLYTSRSKKPE----------ADKRGAE--H-TNIDDLCKQSDFIII 102 (274)
Q Consensus 38 ~~L~gktVGIIGlG--~IG~~iA~~L~~~G~~vv~~~~r~~~~~----------a~~~g~~--~-~sl~ell~~aDvVil 102 (274)
..+.|++|++||-+ ++..+++..+..+|+++.+..+..-.+. +...|.. . .+++++++.+|+|..
T Consensus 152 ~~l~g~~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~d~~ea~~~aDvvyt 231 (336)
T PRK03515 152 KAFNEMTLAYAGDARNNMGNSLLEAAALTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITLTEDIAEGVKGADFIYT 231 (336)
T ss_pred CCcCCCEEEEeCCCcCcHHHHHHHHHHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEe
Confidence 36999999999975 6899999999999997777665443221 1223432 2 389999999999998
Q ss_pred cCCCCc----c---------cHHhccHHHHhcC-CCCcEEEEcC
Q psy3240 103 TSALTP----D---------THHLINRARLESM-KPGAILINTS 132 (274)
Q Consensus 103 ~lPlt~----~---------T~~li~~~~l~~m-k~gailINv~ 132 (274)
-+=... . ....++++.++.. |++++|.-+.
T Consensus 232 d~W~sm~~~~~~~~er~~~~~~y~v~~~lm~~a~k~~~ivmHcL 275 (336)
T PRK03515 232 DVWVSMGEPKEVWAERIALLRPYQVNSKMMQLTGNPQVKFLHCL 275 (336)
T ss_pred cCcccCcchhHHHHHHHHhccCCccCHHHHhcccCCCCEEECCC
Confidence 521110 0 1123567777774 7888888775
No 371
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=95.03 E-value=0.077 Score=50.17 Aligned_cols=88 Identities=22% Similarity=0.294 Sum_probs=57.8
Q ss_pred CCCEEEEEccChHHHHHHHHHccCCCe-EEEEeCCCCChh-HhhcCCccc------CHHHHhc-----ccCEEEEcCCCC
Q psy3240 41 QNSTVGIVGCGRIGLSVLEKLIPYKVS-KFLYTSRSKKPE-ADKRGAEHT------NIDDLCK-----QSDFIIITSALT 107 (274)
Q Consensus 41 ~gktVGIIGlG~IG~~iA~~L~~~G~~-vv~~~~r~~~~~-a~~~g~~~~------sl~ell~-----~aDvVil~lPlt 107 (274)
.|.+|.|.|.|.+|..+++.++..|++ +++.+....+.. +++.|+... ++.+.+. ..|+|+-++...
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~G~~ 270 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEMAGSV 270 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECCCCh
Confidence 588999999999999999999999994 555544443333 566666421 1212111 378888877532
Q ss_pred cccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240 108 PDTHHLINRARLESMKPGAILINTSR 133 (274)
Q Consensus 108 ~~T~~li~~~~l~~mk~gailINv~R 133 (274)
+. + ...++.++++..++.++-
T Consensus 271 ~~----~-~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 271 PA----L-ETAYEITRRGGTTVTAGL 291 (371)
T ss_pred HH----H-HHHHHHHhcCCEEEEEcc
Confidence 11 1 244666788888888764
No 372
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.01 E-value=0.13 Score=48.83 Aligned_cols=97 Identities=18% Similarity=0.199 Sum_probs=58.3
Q ss_pred CEEEEEcc-ChHHHHHHHHHccCCC-------eEEEEeCCCCC--hh--Hh--hcC-------Ccc-cCHHHHhcccCEE
Q psy3240 43 STVGIVGC-GRIGLSVLEKLIPYKV-------SKFLYTSRSKK--PE--AD--KRG-------AEH-TNIDDLCKQSDFI 100 (274)
Q Consensus 43 ktVGIIGl-G~IG~~iA~~L~~~G~-------~vv~~~~r~~~--~~--a~--~~g-------~~~-~sl~ell~~aDvV 100 (274)
++|+|||. |.+|..+|..|...|. +.+.+|..... .. +. ... +.. .+..+.+++||+|
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDiv 82 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADWA 82 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCEE
Confidence 58999999 9999999998875444 45667753322 11 11 111 111 2456789999999
Q ss_pred EEcCCCCc---ccHH-hc--cHH-------HHhcCC-CCcEEEEcCCCchhcHHH
Q psy3240 101 IITSALTP---DTHH-LI--NRA-------RLESMK-PGAILINTSRGQLVDQEA 141 (274)
Q Consensus 101 il~lPlt~---~T~~-li--~~~-------~l~~mk-~gailINv~RG~iVde~a 141 (274)
+++.-... +||. ++ |.+ .+..-. |.+++|.++ .++|.-.
T Consensus 83 vitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t 135 (322)
T cd01338 83 LLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG--NPCNTNA 135 (322)
T ss_pred EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec--CcHHHHH
Confidence 99875421 1322 11 111 233334 588999996 6666554
No 373
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=95.00 E-value=0.11 Score=49.02 Aligned_cols=94 Identities=21% Similarity=0.261 Sum_probs=65.9
Q ss_pred CCCCCEEEEEcc---ChHHHHHHHHHccCCC-eEEEEeCCCCChhHh-hcCCcc-cCHHHHhcccCEEEEcCCCCc----
Q psy3240 39 ALQNSTVGIVGC---GRIGLSVLEKLIPYKV-SKFLYTSRSKKPEAD-KRGAEH-TNIDDLCKQSDFIIITSALTP---- 108 (274)
Q Consensus 39 ~L~gktVGIIGl---G~IG~~iA~~L~~~G~-~vv~~~~r~~~~~a~-~~g~~~-~sl~ell~~aDvVil~lPlt~---- 108 (274)
.+.|.+|+++|= +++..+++..+..+|+ ++.+..+..-.+... ...+.. .+++++++.+|+|...-=..+
T Consensus 154 ~l~g~~va~vGD~~~~rv~~Sl~~~~a~~g~~~v~~~~P~~~~p~~~~~~~~~~~~d~~ea~~~aDvvy~~~~~~er~~~ 233 (310)
T PRK13814 154 HWNKLCVTIIGDIRHSRVANSLMDGLVTMGVPEIRLVGPSSLLPDKVGNDSIKKFTELKPSLLNSDVIVTLRLQKERHDN 233 (310)
T ss_pred CcCCcEEEEECCCCCCcHHHHHHHHHHHcCCCEEEEeCCcccCcCccccceEEEEcCHHHHhCCCCEEEECccccccccc
Confidence 488999999997 6999999999999998 777776654332211 112333 489999999999988322111
Q ss_pred -cc------HHhccHHHHhcCCCCcEEEEcC
Q psy3240 109 -DT------HHLINRARLESMKPGAILINTS 132 (274)
Q Consensus 109 -~T------~~li~~~~l~~mk~gailINv~ 132 (274)
.. ...++.+.++.+|++++|.-+.
T Consensus 234 ~~~~~~~~~~y~v~~~~l~~a~~~~i~mHcL 264 (310)
T PRK13814 234 SVDIDAFRGSFRLTPEKLYSAKPDAIVMHPG 264 (310)
T ss_pred hhHHHHhCCCcccCHHHHHhcCCCCEEECCC
Confidence 00 1335677888888888888775
No 374
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=95.00 E-value=0.077 Score=46.63 Aligned_cols=38 Identities=13% Similarity=0.341 Sum_probs=32.1
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHccCCCeE-EEEeCCC
Q psy3240 38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSK-FLYTSRS 75 (274)
Q Consensus 38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~v-v~~~~r~ 75 (274)
+.|++++|.|+|+|.+|..+|+.|...|... .++|+..
T Consensus 17 ~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 17 KRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred HHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 5699999999999999999999999989864 4555543
No 375
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=94.99 E-value=0.046 Score=56.33 Aligned_cols=34 Identities=24% Similarity=0.408 Sum_probs=29.5
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEE
Q psy3240 38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLY 71 (274)
Q Consensus 38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~ 71 (274)
..|++.+|+|||+|.+|..+|+.|.+.|...+..
T Consensus 334 ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~Itl 367 (664)
T TIGR01381 334 ERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITF 367 (664)
T ss_pred HHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEE
Confidence 4577999999999999999999999999866543
No 376
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=94.96 E-value=0.13 Score=48.70 Aligned_cols=77 Identities=18% Similarity=0.267 Sum_probs=51.5
Q ss_pred CEEEEEcc-ChHHHHHHHHHccCC-CeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhccHHHHh
Q psy3240 43 STVGIVGC-GRIGLSVLEKLIPYK-VSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLE 120 (274)
Q Consensus 43 ktVGIIGl-G~IG~~iA~~L~~~G-~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~ 120 (274)
-+|+|+|. |-.|..+.++|...- ++......+.. ....+.+++++++|++++++|.. .+..+.. . +
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~--------~~~~~~~~~~~~~D~vFlalp~~-~s~~~~~-~-~- 69 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR--------KDAAERAKLLNAADVAILCLPDD-AAREAVS-L-V- 69 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc--------cCcCCHhHhhcCCCEEEECCCHH-HHHHHHH-H-H-
Confidence 37999995 999999999998653 43333332221 12235667888999999999964 3333331 1 2
Q ss_pred cCCCCcEEEEcC
Q psy3240 121 SMKPGAILINTS 132 (274)
Q Consensus 121 ~mk~gailINv~ 132 (274)
.+.|+.+||.|
T Consensus 70 -~~~g~~VIDlS 80 (310)
T TIGR01851 70 -DNPNTCIIDAS 80 (310)
T ss_pred -HhCCCEEEECC
Confidence 24689999998
No 377
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=94.95 E-value=0.064 Score=51.29 Aligned_cols=87 Identities=20% Similarity=0.313 Sum_probs=51.6
Q ss_pred CCCEEEEEc-cChHHHHHHHHHccCCC---eEEEE-eCCCCChhHhhcCCc--ccCHH-HHhcccCEEEEcCCCCcccHH
Q psy3240 41 QNSTVGIVG-CGRIGLSVLEKLIPYKV---SKFLY-TSRSKKPEADKRGAE--HTNID-DLCKQSDFIIITSALTPDTHH 112 (274)
Q Consensus 41 ~gktVGIIG-lG~IG~~iA~~L~~~G~---~vv~~-~~r~~~~~a~~~g~~--~~sl~-ell~~aDvVil~lPlt~~T~~ 112 (274)
...+|+|+| .|.+|+.+.+.|...+. +.... ..++........+.. ..+++ +.+..+|+|++++|.. .+..
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~~~D~vf~a~p~~-~s~~ 84 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFDGVDIALFSAGGS-ISKK 84 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHcCCCEEEECCCcH-HHHH
Confidence 457899999 59999999999987443 22222 222222111112221 11222 4558899999999964 3333
Q ss_pred hccHHHHhcCCCCcEEEEcC
Q psy3240 113 LINRARLESMKPGAILINTS 132 (274)
Q Consensus 113 li~~~~l~~mk~gailINv~ 132 (274)
+.. +. .+.|+.+||.|
T Consensus 85 ~~~-~~---~~~g~~VIDlS 100 (344)
T PLN02383 85 FGP-IA---VDKGAVVVDNS 100 (344)
T ss_pred HHH-HH---HhCCCEEEECC
Confidence 321 11 25789999998
No 378
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.94 E-value=0.068 Score=52.78 Aligned_cols=110 Identities=17% Similarity=0.271 Sum_probs=64.4
Q ss_pred CCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-Hhhc-CCcc--cCHHHHhcccCEEEEcCCCCcccHH----
Q psy3240 41 QNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKR-GAEH--TNIDDLCKQSDFIIITSALTPDTHH---- 112 (274)
Q Consensus 41 ~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~-g~~~--~sl~ell~~aDvVil~lPlt~~T~~---- 112 (274)
.|++|+|+|+|.-|.++|+.|+. |++++++|.+..... ..+. .... ....+.+.++|+|+..--..+...-
T Consensus 5 ~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SPgI~~~~p~~~~a 83 (454)
T PRK01368 5 TKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNAIAALSDSRWQNLDKIVLSPGIPLTHEIVKIA 83 (454)
T ss_pred CCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCceeccCChhHhhCCCEEEECCCCCCCCHHHHHH
Confidence 57899999999999999999995 998778775433221 1111 1111 1123456789988775322222211
Q ss_pred ------hccH-HHH-hcCCCC-cEEEEcCCCchhcHHHHHhhhhhhhh
Q psy3240 113 ------LINR-ARL-ESMKPG-AILINTSRGQLVDQEALIDFIADIRV 151 (274)
Q Consensus 113 ------li~~-~~l-~~mk~g-ailINv~RG~iVde~aL~~~L~~~~i 151 (274)
++++ +++ ..+++. .+-|--+-|+.-...-+...|+..|.
T Consensus 84 ~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~ 131 (454)
T PRK01368 84 KNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNSNGL 131 (454)
T ss_pred HHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCC
Confidence 2222 232 233332 33344456888777777777877554
No 379
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=94.93 E-value=0.47 Score=43.73 Aligned_cols=32 Identities=16% Similarity=0.280 Sum_probs=28.1
Q ss_pred CCCCCCCCEEEEEccChHHHHHHHHHccCCCe
Q psy3240 36 CGPALQNSTVGIVGCGRIGLSVLEKLIPYKVS 67 (274)
Q Consensus 36 ~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~ 67 (274)
.|+.|...+|.|+|.|.-|-.+|+.|...+.+
T Consensus 19 ~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~ 50 (254)
T cd00762 19 TKKKISEHKVLFNGAGAAALGIANLIVXLXVK 50 (254)
T ss_pred hCCChhhcEEEEECcCHHHHHHHHHHHHHHHh
Confidence 46789999999999999999999999876653
No 380
>PRK07411 hypothetical protein; Validated
Probab=94.90 E-value=0.068 Score=51.87 Aligned_cols=86 Identities=19% Similarity=0.190 Sum_probs=57.2
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHccCCCeEE-EEeCCCCChh---------Hhhc-----------------CCc----
Q psy3240 38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKF-LYTSRSKKPE---------ADKR-----------------GAE---- 86 (274)
Q Consensus 38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv-~~~~r~~~~~---------a~~~-----------------g~~---- 86 (274)
..|+.++|+|||+|.+|..+|+.|...|...+ ++|...-... .... .+.
T Consensus 34 ~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~ 113 (390)
T PRK07411 34 KRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLY 113 (390)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEE
Confidence 46999999999999999999999998887554 4443221100 0000 110
Q ss_pred --cc---CHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCC
Q psy3240 87 --HT---NIDDLCKQSDFIIITSALTPDTHHLINRARLESMKP 124 (274)
Q Consensus 87 --~~---sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~ 124 (274)
.. +..+++.++|+|+.|+- +.+++.+++....+.-+|
T Consensus 114 ~~~~~~~~~~~~~~~~D~Vvd~~d-~~~~r~~ln~~~~~~~~p 155 (390)
T PRK07411 114 ETRLSSENALDILAPYDVVVDGTD-NFPTRYLVNDACVLLNKP 155 (390)
T ss_pred ecccCHHhHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHcCCC
Confidence 11 34567899999999875 557888888766554444
No 381
>PRK10206 putative oxidoreductase; Provisional
Probab=94.90 E-value=0.069 Score=50.67 Aligned_cols=66 Identities=14% Similarity=0.211 Sum_probs=42.5
Q ss_pred EEEEEccChHHHH-HHHHH-cc-CCCeEEEEeCCCCChh--HhhcC-Ccc-cCHHHHhc--ccCEEEEcCCCCcc
Q psy3240 44 TVGIVGCGRIGLS-VLEKL-IP-YKVSKFLYTSRSKKPE--ADKRG-AEH-TNIDDLCK--QSDFIIITSALTPD 109 (274)
Q Consensus 44 tVGIIGlG~IG~~-iA~~L-~~-~G~~vv~~~~r~~~~~--a~~~g-~~~-~sl~ell~--~aDvVil~lPlt~~ 109 (274)
++||||+|.|++. .+..+ .. -+++++.+.++..+.. +...+ ... .+++++++ +.|+|++++|....
T Consensus 3 rvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~H 77 (344)
T PRK10206 3 NCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSH 77 (344)
T ss_pred EEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCchHH
Confidence 7999999998863 34444 32 3566665555543322 33343 333 48999996 57999999996433
No 382
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=94.90 E-value=0.078 Score=51.68 Aligned_cols=87 Identities=17% Similarity=0.323 Sum_probs=59.5
Q ss_pred CCCCEEEEEccC----------hHHHHHHHHHccCCCeEEEEeCCCCChhHhh-cCCccc-CHHHHhcccCEEEEcCCCC
Q psy3240 40 LQNSTVGIVGCG----------RIGLSVLEKLIPYKVSKFLYTSRSKKPEADK-RGAEHT-NIDDLCKQSDFIIITSALT 107 (274)
Q Consensus 40 L~gktVGIIGlG----------~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~-~g~~~~-sl~ell~~aDvVil~lPlt 107 (274)
|+||+|||+|+- .-...++++|+..|+++++|++-........ .++... +++++++.||+++++..-
T Consensus 308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~~~~~~~~~~~~~~~~~~~~~aDaivi~tew- 386 (414)
T COG1004 308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAMENAFRNFPDVELESDAEEALKGADAIVINTEW- 386 (414)
T ss_pred CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhhHHHHhcCCCceEeCCHHHHHhhCCEEEEeccH-
Confidence 999999999985 4567899999999999999987554333221 134444 899999999999997652
Q ss_pred cccHHhccHHHHhcCCCCcEEEE
Q psy3240 108 PDTHHLINRARLESMKPGAILIN 130 (274)
Q Consensus 108 ~~T~~li~~~~l~~mk~gailIN 130 (274)
++-+. ++-+.+ .|| +..+++
T Consensus 387 ~ef~~-~d~~~~-~m~-~~~v~D 406 (414)
T COG1004 387 DEFRD-LDFEKL-LMK-TPVVID 406 (414)
T ss_pred HHHhc-cChhhh-hcc-CCEEEe
Confidence 22222 233333 454 455555
No 383
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=94.88 E-value=0.14 Score=47.95 Aligned_cols=90 Identities=14% Similarity=0.194 Sum_probs=58.0
Q ss_pred CCCEEEEEccChHHHHHHHHHcc-CC-CeEEEEeCCCCChh-HhhcCCcccCHHHHhc--ccCEEEEcCCCCcccHHhcc
Q psy3240 41 QNSTVGIVGCGRIGLSVLEKLIP-YK-VSKFLYTSRSKKPE-ADKRGAEHTNIDDLCK--QSDFIIITSALTPDTHHLIN 115 (274)
Q Consensus 41 ~gktVGIIGlG~IG~~iA~~L~~-~G-~~vv~~~~r~~~~~-a~~~g~~~~sl~ell~--~aDvVil~lPlt~~T~~li~ 115 (274)
.|.+|.|+|.|.||...++.++. +| .++++.+.+..+.+ ++..+... ..+++.+ ..|+|+-++... .+...+
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~-~~~~~~~~~g~d~viD~~G~~-~~~~~~- 239 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETY-LIDDIPEDLAVDHAFECVGGR-GSQSAI- 239 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCcee-ehhhhhhccCCcEEEECCCCC-ccHHHH-
Confidence 58999999999999999998875 55 45556665544444 44444332 1222222 379999888631 122223
Q ss_pred HHHHhcCCCCcEEEEcCC
Q psy3240 116 RARLESMKPGAILINTSR 133 (274)
Q Consensus 116 ~~~l~~mk~gailINv~R 133 (274)
...++.++++..++.++-
T Consensus 240 ~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 240 NQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred HHHHHhCcCCcEEEEEee
Confidence 356778999999988764
No 384
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=94.78 E-value=0.12 Score=48.95 Aligned_cols=77 Identities=22% Similarity=0.303 Sum_probs=49.8
Q ss_pred CEEEEEc-cChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhccHHHHhc
Q psy3240 43 STVGIVG-CGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLES 121 (274)
Q Consensus 43 ktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~ 121 (274)
.+|+||| .|..|+.+.+.|.....-.+.+...+... .. .+.++.++++|++++++|.. ... +..++
T Consensus 3 ~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~-----~~--~~~~~~~~~~DvvFlalp~~-~s~-----~~~~~ 69 (313)
T PRK11863 3 PKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK-----DA--AARRELLNAADVAILCLPDD-AAR-----EAVAL 69 (313)
T ss_pred cEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC-----cc--cCchhhhcCCCEEEECCCHH-HHH-----HHHHH
Confidence 5899999 69999999999986543223333222111 01 23455667899999999963 222 22222
Q ss_pred C-CCCcEEEEcC
Q psy3240 122 M-KPGAILINTS 132 (274)
Q Consensus 122 m-k~gailINv~ 132 (274)
+ +.|+.+||.|
T Consensus 70 ~~~~g~~VIDlS 81 (313)
T PRK11863 70 IDNPATRVIDAS 81 (313)
T ss_pred HHhCCCEEEECC
Confidence 2 5689999998
No 385
>PRK04148 hypothetical protein; Provisional
Probab=94.78 E-value=0.064 Score=44.81 Aligned_cols=74 Identities=18% Similarity=0.140 Sum_probs=52.4
Q ss_pred CCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc------CHHHHhcccCEEEEcCCCCcccHH
Q psy3240 40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT------NIDDLCKQSDFIIITSALTPDTHH 112 (274)
Q Consensus 40 L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~------sl~ell~~aDvVil~lPlt~~T~~ 112 (274)
.+++++..||+| -|..+|+.|+..|.++++.|.+....+ +...+.... .--++.+.+|+|...=|..+-.+.
T Consensus 15 ~~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp~el~~~ 93 (134)
T PRK04148 15 GKNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPPRDLQPF 93 (134)
T ss_pred ccCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCCHHHHHH
Confidence 356889999999 999999999999998888887665433 444444321 223567888888888775444444
Q ss_pred hc
Q psy3240 113 LI 114 (274)
Q Consensus 113 li 114 (274)
++
T Consensus 94 ~~ 95 (134)
T PRK04148 94 IL 95 (134)
T ss_pred HH
Confidence 44
No 386
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.75 E-value=0.091 Score=45.71 Aligned_cols=37 Identities=16% Similarity=0.238 Sum_probs=31.5
Q ss_pred CCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCC
Q psy3240 39 ALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRS 75 (274)
Q Consensus 39 ~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~ 75 (274)
+++|+++.|.|. |.||+.+++.|...|+++++.+++.
T Consensus 2 ~~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~ 39 (238)
T PRK05786 2 RLKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNE 39 (238)
T ss_pred CcCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 478999999996 8899999999999999777766544
No 387
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=94.74 E-value=0.12 Score=48.50 Aligned_cols=88 Identities=19% Similarity=0.291 Sum_probs=57.7
Q ss_pred CCCEEEEEccChHHHHHHHHHccCCCe-EEEEeCCCCChh-HhhcCCccc------CHHH----Hhc--ccCEEEEcCCC
Q psy3240 41 QNSTVGIVGCGRIGLSVLEKLIPYKVS-KFLYTSRSKKPE-ADKRGAEHT------NIDD----LCK--QSDFIIITSAL 106 (274)
Q Consensus 41 ~gktVGIIGlG~IG~~iA~~L~~~G~~-vv~~~~r~~~~~-a~~~g~~~~------sl~e----ll~--~aDvVil~lPl 106 (274)
.|++|.|.|.|.+|...++.++..|++ +++.++...+.+ +++.|+... +..+ +.. ..|+|+-++..
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vid~~g~ 255 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVVIDAVGR 255 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCEEEECCCC
Confidence 589999999999999999999999986 444444433333 556665321 2212 221 37888887753
Q ss_pred CcccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240 107 TPDTHHLINRARLESMKPGAILINTSR 133 (274)
Q Consensus 107 t~~T~~li~~~~l~~mk~gailINv~R 133 (274)
+. .+ ...+..++++..+|.+|.
T Consensus 256 -~~---~~-~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 256 -PE---TY-KQAFYARDLAGTVVLVGV 277 (358)
T ss_pred -HH---HH-HHHHHHhccCCEEEEECC
Confidence 11 12 234667788888888874
No 388
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=94.71 E-value=0.12 Score=52.72 Aligned_cols=69 Identities=13% Similarity=0.311 Sum_probs=49.9
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHh--hcCC--cccC---HHHHhcccCEEEEcCCC
Q psy3240 38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEAD--KRGA--EHTN---IDDLCKQSDFIIITSAL 106 (274)
Q Consensus 38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~--~~g~--~~~s---l~ell~~aDvVil~lPl 106 (274)
.+...|+|||||-|..|+.+++.++.+|++++++++....+... ...+ .+.+ +.++.+++|+|......
T Consensus 18 ~~~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~~dvIt~e~e~ 93 (577)
T PLN02948 18 HGVSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFAKRCDVLTVEIEH 93 (577)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHHHHCCEEEEecCC
Confidence 35889999999999999999999999999888888765433311 1111 1223 55667889999876554
No 389
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.70 E-value=0.17 Score=47.86 Aligned_cols=96 Identities=19% Similarity=0.204 Sum_probs=57.7
Q ss_pred CEEEEEcc-ChHHHHHHHHHccCC-------CeEEEEeCCCCC--hhHhhc-----------CCc-ccCHHHHhcccCEE
Q psy3240 43 STVGIVGC-GRIGLSVLEKLIPYK-------VSKFLYTSRSKK--PEADKR-----------GAE-HTNIDDLCKQSDFI 100 (274)
Q Consensus 43 ktVGIIGl-G~IG~~iA~~L~~~G-------~~vv~~~~r~~~--~~a~~~-----------g~~-~~sl~ell~~aDvV 100 (274)
.+|+|+|. |.+|+.+|..|...+ .+++++|..... ...... ... ..++.+.++.||+|
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiV 82 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVA 82 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEE
Confidence 36999999 999999999997644 356777754322 111100 011 23567889999999
Q ss_pred EEcCCCCc---ccHH-hc--cHH-------HHhcC-CCCcEEEEcCCCchhcHH
Q psy3240 101 IITSALTP---DTHH-LI--NRA-------RLESM-KPGAILINTSRGQLVDQE 140 (274)
Q Consensus 101 il~lPlt~---~T~~-li--~~~-------~l~~m-k~gailINv~RG~iVde~ 140 (274)
+.+.-... .++. ++ |.+ .+... +|++++|.++ .++|.-
T Consensus 83 I~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~ 134 (325)
T cd01336 83 ILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVG--NPANTN 134 (325)
T ss_pred EEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEec--CcHHHH
Confidence 98765422 2221 22 111 23333 5788999887 455544
No 390
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=94.69 E-value=0.22 Score=47.57 Aligned_cols=95 Identities=20% Similarity=0.223 Sum_probs=66.0
Q ss_pred CCCCCCEEEEEccC--hHHHHHHHHHccCCCeEEEEeCCCCCh--h--------HhhcCCcc---cCHHHHhcccCEEEE
Q psy3240 38 PALQNSTVGIVGCG--RIGLSVLEKLIPYKVSKFLYTSRSKKP--E--------ADKRGAEH---TNIDDLCKQSDFIII 102 (274)
Q Consensus 38 ~~L~gktVGIIGlG--~IG~~iA~~L~~~G~~vv~~~~r~~~~--~--------a~~~g~~~---~sl~ell~~aDvVil 102 (274)
..+.|++|++||=+ ++.++++..+..+|+++.+..+..-.+ . +...|... .+++++++.+|+|..
T Consensus 152 ~~l~gl~va~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt 231 (334)
T PRK12562 152 KAFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTEDIAAGVKGADFIYT 231 (334)
T ss_pred CCcCCcEEEEECCCCCCHHHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEE
Confidence 35899999999975 789999999999999777766654222 1 12234332 489999999999998
Q ss_pred cCCC----C-c---c-----cHHhccHHHHhcC-CCCcEEEEcC
Q psy3240 103 TSAL----T-P---D-----THHLINRARLESM-KPGAILINTS 132 (274)
Q Consensus 103 ~lPl----t-~---~-----T~~li~~~~l~~m-k~gailINv~ 132 (274)
-.=. . + + -..-++++.++.. +++++|.-+.
T Consensus 232 ~~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~~~~~i~mHcL 275 (334)
T PRK12562 232 DVWVSMGEPKEKWAERIALLRGYQVNSKMMALTGNPQVKFLHCL 275 (334)
T ss_pred cCccccccchhhHHHHHHhccCCcCCHHHHHhhcCCCCEEECCC
Confidence 5410 0 0 0 0123577888875 7889988875
No 391
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=94.67 E-value=0.16 Score=47.85 Aligned_cols=89 Identities=21% Similarity=0.238 Sum_probs=60.9
Q ss_pred CCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh--HhhcCCccc----C---HHHHhcccCEEEEcCCCCccc
Q psy3240 40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--ADKRGAEHT----N---IDDLCKQSDFIIITSALTPDT 110 (274)
Q Consensus 40 L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a~~~g~~~~----s---l~ell~~aDvVil~lPlt~~T 110 (274)
..|.+|.|.|.|.+|..+++.++..|+++++...+..+.. .+..|+... + +.+.....|+++-++.....
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~g~~~~- 257 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTVPVFHP- 257 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECCCchHH-
Confidence 4689999999999999999999999997666665443332 234665421 1 22233357999988763221
Q ss_pred HHhccHHHHhcCCCCcEEEEcCC
Q psy3240 111 HHLINRARLESMKPGAILINTSR 133 (274)
Q Consensus 111 ~~li~~~~l~~mk~gailINv~R 133 (274)
+ ...++.++++..++.++.
T Consensus 258 ---~-~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 258 ---L-EPYLSLLKLDGKLILMGV 276 (357)
T ss_pred ---H-HHHHHHhccCCEEEEECC
Confidence 1 345677899999999875
No 392
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.67 E-value=0.37 Score=47.00 Aligned_cols=110 Identities=24% Similarity=0.231 Sum_probs=67.4
Q ss_pred CCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh---Hhh--cCCccc---CHHHHhcccCEEEEcCCCCcccHH-
Q psy3240 42 NSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE---ADK--RGAEHT---NIDDLCKQSDFIIITSALTPDTHH- 112 (274)
Q Consensus 42 gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~---a~~--~g~~~~---sl~ell~~aDvVil~lPlt~~T~~- 112 (274)
.-+|+|+|+|.+|.++|+.|+..|.++.++|....... ..+ .|+... .-.+.+.++|+|+..--..+...-
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~sp~i~~~~p~~ 85 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIISPGLALDTPAL 85 (448)
T ss_pred CCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEECCCCCCCCHHH
Confidence 45799999999999999999999998888775543221 122 255432 123456789988764322222111
Q ss_pred ---------hccH-HHHhc-CCCCcEEEEcCCCchhcHHHHHhhhhhhhh
Q psy3240 113 ---------LINR-ARLES-MKPGAILINTSRGQLVDQEALIDFIADIRV 151 (274)
Q Consensus 113 ---------li~~-~~l~~-mk~gailINv~RG~iVde~aL~~~L~~~~i 151 (274)
++.+ +.+.. ++...+-|--+.|+.--..-+...|+..|.
T Consensus 86 ~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~ 135 (448)
T PRK03803 86 RAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKAAGK 135 (448)
T ss_pred HHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCC
Confidence 2222 33333 333344455556888777777777877654
No 393
>PLN02740 Alcohol dehydrogenase-like
Probab=94.62 E-value=0.14 Score=48.66 Aligned_cols=89 Identities=20% Similarity=0.241 Sum_probs=56.1
Q ss_pred CCCCEEEEEccChHHHHHHHHHccCCCe-EEEEeCCCCChh-HhhcCCccc-C-------HHHHhc-----ccCEEEEcC
Q psy3240 40 LQNSTVGIVGCGRIGLSVLEKLIPYKVS-KFLYTSRSKKPE-ADKRGAEHT-N-------IDDLCK-----QSDFIIITS 104 (274)
Q Consensus 40 L~gktVGIIGlG~IG~~iA~~L~~~G~~-vv~~~~r~~~~~-a~~~g~~~~-s-------l~ell~-----~aDvVil~l 104 (274)
-.|.+|.|+|.|.+|..+++.++.+|++ +++.+.+..+.+ +++.|+... + +.+.+. ..|+|+-++
T Consensus 197 ~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dvvid~~ 276 (381)
T PLN02740 197 QAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGITDFINPKDSDKPVHERIREMTGGGVDYSFECA 276 (381)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECC
Confidence 3589999999999999999999999984 555555444444 556665321 1 222221 378888776
Q ss_pred CCCcccHHhccHHHHhcCCCC-cEEEEcCC
Q psy3240 105 ALTPDTHHLINRARLESMKPG-AILINTSR 133 (274)
Q Consensus 105 Plt~~T~~li~~~~l~~mk~g-ailINv~R 133 (274)
-... .+ ...+..++++ ..++.+|.
T Consensus 277 G~~~----~~-~~a~~~~~~g~G~~v~~G~ 301 (381)
T PLN02740 277 GNVE----VL-REAFLSTHDGWGLTVLLGI 301 (381)
T ss_pred CChH----HH-HHHHHhhhcCCCEEEEEcc
Confidence 5321 12 2445556665 66666654
No 394
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=94.52 E-value=0.17 Score=46.83 Aligned_cols=89 Identities=24% Similarity=0.277 Sum_probs=60.4
Q ss_pred CCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc----C--H-HHHhcccCEEEEcCCCCcccHH
Q psy3240 41 QNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT----N--I-DDLCKQSDFIIITSALTPDTHH 112 (274)
Q Consensus 41 ~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~----s--l-~ell~~aDvVil~lPlt~~T~~ 112 (274)
.|.++.|.|.|.+|+.+++.++.+|+++++.+++..+.. +.+.|+... + . .+.-...|+|+-+++...
T Consensus 169 ~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~d~v~~~~g~~~---- 244 (337)
T cd05283 169 PGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKLGADEFIATKDPEAMKKAAGSLDLIIDTVSASH---- 244 (337)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEecCcchhhhhhccCCceEEEECCCCcc----
Confidence 578999999999999999999999996655555443333 444555321 1 1 122345789998887531
Q ss_pred hccHHHHhcCCCCcEEEEcCCC
Q psy3240 113 LINRARLESMKPGAILINTSRG 134 (274)
Q Consensus 113 li~~~~l~~mk~gailINv~RG 134 (274)
.-...++.++++..+++++..
T Consensus 245 -~~~~~~~~l~~~G~~v~~g~~ 265 (337)
T cd05283 245 -DLDPYLSLLKPGGTLVLVGAP 265 (337)
T ss_pred -hHHHHHHHhcCCCEEEEEecc
Confidence 124557778888888888753
No 395
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=94.51 E-value=0.22 Score=48.88 Aligned_cols=96 Identities=17% Similarity=0.195 Sum_probs=62.1
Q ss_pred CCCCCCCEEEEEcc----------ChHHHHHHHHHccCCCeEEEEeCCCCChhH-hhcCCcccCHHHHhcccCEEEEcCC
Q psy3240 37 GPALQNSTVGIVGC----------GRIGLSVLEKLIPYKVSKFLYTSRSKKPEA-DKRGAEHTNIDDLCKQSDFIIITSA 105 (274)
Q Consensus 37 g~~L~gktVGIIGl----------G~IG~~iA~~L~~~G~~vv~~~~r~~~~~a-~~~g~~~~sl~ell~~aDvVil~lP 105 (274)
|.++.|++|+|+|+ ..-+..+++.|+..|.++.+||+.-..... ...+....+ ...++.||+|++++.
T Consensus 309 ~~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~-~~~~~~ad~vvi~t~ 387 (425)
T PRK15182 309 GINVEGSSVLILGFTFKENCPDIRNTRIIDVVKELGKYSCKVDIFDPWVDAEEVRREYGIIPVS-EVKSSHYDAIIVAVG 387 (425)
T ss_pred CCCCCCCEEEEEEeEeCCCCCccccCcHHHHHHHHHhCCCEEEEECCCCChhHHHHhcCcccch-hhhhcCCCEEEEccC
Confidence 45789999999999 467899999999999988888876332221 222322111 224678999999887
Q ss_pred CCcccHHhccHHHHh-cCCCCcEEEEcCCCch
Q psy3240 106 LTPDTHHLINRARLE-SMKPGAILINTSRGQL 136 (274)
Q Consensus 106 lt~~T~~li~~~~l~-~mk~gailINv~RG~i 136 (274)
-. +-+. ++.+.+. .|+...++||. |+-+
T Consensus 388 h~-~f~~-~~~~~~~~~~~~~~~iiD~-r~~~ 416 (425)
T PRK15182 388 HQ-QFKQ-MGSEDIRGFGKDKHVLYDL-KYVL 416 (425)
T ss_pred CH-Hhhc-CCHHHHHHhcCCCCEEEEC-CCCC
Confidence 43 3222 3444443 45545689984 5544
No 396
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=94.49 E-value=0.26 Score=47.53 Aligned_cols=94 Identities=14% Similarity=0.228 Sum_probs=64.1
Q ss_pred CCCCCEEEEEccC--------hHHHHHHHHHccCCCeEEEEeCCCCC--hh--------HhhcCCcc---cCHHHHhccc
Q psy3240 39 ALQNSTVGIVGCG--------RIGLSVLEKLIPYKVSKFLYTSRSKK--PE--------ADKRGAEH---TNIDDLCKQS 97 (274)
Q Consensus 39 ~L~gktVGIIGlG--------~IG~~iA~~L~~~G~~vv~~~~r~~~--~~--------a~~~g~~~---~sl~ell~~a 97 (274)
.|+|+||+|+|.| ++.++++..+..+|+++.+..+..-. +. +.+.|... .+++++++.+
T Consensus 167 ~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~~ea~~~a 246 (357)
T TIGR03316 167 NLKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFNIVNSMDEAFKDA 246 (357)
T ss_pred ccCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence 4889999999853 45578888899999987777665321 11 12345432 3899999999
Q ss_pred CEEEEcC----C----------CCcc-----------------cHHhccHHHHhcCC-CCcEEEEcC
Q psy3240 98 DFIIITS----A----------LTPD-----------------THHLINRARLESMK-PGAILINTS 132 (274)
Q Consensus 98 DvVil~l----P----------lt~~-----------------T~~li~~~~l~~mk-~gailINv~ 132 (274)
|+|..-. . ..+. ....++++.++.++ ++++|.-+.
T Consensus 247 Dvvyt~~w~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~vt~e~l~~a~~~~~i~MHcL 313 (357)
T TIGR03316 247 DIVYPKSWAPIAAMEKRTELYTGSDTEGAELLEQELLSQNKKHKDWVCTEERMALTHDGEALYMHCL 313 (357)
T ss_pred CEEEECCeeccccccccchhcccchhhhhhhhhccchhHHHHhcCCeECHHHHHhcCCCCcEEECCC
Confidence 9999863 1 0000 01236888888888 888888774
No 397
>PLN02342 ornithine carbamoyltransferase
Probab=94.45 E-value=0.26 Score=47.38 Aligned_cols=94 Identities=18% Similarity=0.173 Sum_probs=67.0
Q ss_pred CCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChh------HhhcCC---cc-cCHHHHhcccCEEEEcC---
Q psy3240 39 ALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPE------ADKRGA---EH-TNIDDLCKQSDFIIITS--- 104 (274)
Q Consensus 39 ~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~------a~~~g~---~~-~sl~ell~~aDvVil~l--- 104 (274)
.+.|++|+++|= -++.++++..+..+|+++.+..+..-.+. +...|. .. .+++++++.+|+|..-.
T Consensus 191 ~l~glkva~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~d~~eav~~aDVvy~~~W~s 270 (348)
T PLN02342 191 RLEGTKVVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITNDPAEAVKGADVVYTDVWAS 270 (348)
T ss_pred CcCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEEcCHHHHhCCCCEEEECCccc
Confidence 589999999995 57888888889999997777666543221 122332 22 48999999999999863
Q ss_pred -CCCcc--------cHHhccHHHHhcCCCCcEEEEcC
Q psy3240 105 -ALTPD--------THHLINRARLESMKPGAILINTS 132 (274)
Q Consensus 105 -Plt~~--------T~~li~~~~l~~mk~gailINv~ 132 (274)
-..+. ....++++.++.+|++++|.-+.
T Consensus 271 ~~~~e~~~~~~~~~~~y~vt~ell~~ak~~aivMHpL 307 (348)
T PLN02342 271 MGQKEEAEKRKKAFQGFQVNEALMKLAGPQAYFMHCL 307 (348)
T ss_pred cccchhhHHHHHhccCCccCHHHHhccCCCcEEeCCC
Confidence 11111 11346888999999999998875
No 398
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=94.41 E-value=0.11 Score=43.65 Aligned_cols=100 Identities=19% Similarity=0.201 Sum_probs=62.2
Q ss_pred CCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhccHHH
Q psy3240 39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRAR 118 (274)
Q Consensus 39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~~~ 118 (274)
...|++|++||+ =++++++|+..+.++.+++.+.........+......++++++||+|++.--. -..+-+ .+.
T Consensus 8 ~~~~~~V~~VG~---f~P~~~~l~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~l~~aD~viiTGsT--lvN~Ti-~~i 81 (147)
T PF04016_consen 8 IGPGDKVGMVGY---FQPLVEKLKERGAEVRVFDLNPDNIGEEPGDVPDEDAEEILPWADVVIITGST--LVNGTI-DDI 81 (147)
T ss_dssp TTTTSEEEEES-----HCCHHHHCCCCSEEEEEESSGGG--SSCT-EEGGGHHHHGGG-SEEEEECHH--CCTTTH-HHH
T ss_pred hcCCCEEEEEcC---cHHHHHHHhcCCCCEEEEECCCCCCCCCCCcCCHHHHHHHHccCCEEEEEeee--eecCCH-HHH
Confidence 457999999996 12378888888888888886654322111222334678999999999994321 111112 357
Q ss_pred HhcCCCCcEEEEcCCCchhcHHHHHh
Q psy3240 119 LESMKPGAILINTSRGQLVDQEALID 144 (274)
Q Consensus 119 l~~mk~gailINv~RG~iVde~aL~~ 144 (274)
|+..++++.++=+|-....-.+.|.+
T Consensus 82 L~~~~~~~~vil~GpS~~~~P~~l~~ 107 (147)
T PF04016_consen 82 LELARNAREVILYGPSAPLHPEALFD 107 (147)
T ss_dssp HHHTTTSSEEEEESCCGGS-GGGGCC
T ss_pred HHhCccCCeEEEEecCchhhHHHHHh
Confidence 78888888888888766665555444
No 399
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=94.41 E-value=0.12 Score=49.46 Aligned_cols=86 Identities=16% Similarity=0.335 Sum_probs=52.6
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHcc--CCC-eEEEEeCCCCC-hh--HhhcCCcccCHHHH-hcccCEEEEcCCCCcccHH
Q psy3240 41 QNSTVGIVGC-GRIGLSVLEKLIP--YKV-SKFLYTSRSKK-PE--ADKRGAEHTNIDDL-CKQSDFIIITSALTPDTHH 112 (274)
Q Consensus 41 ~gktVGIIGl-G~IG~~iA~~L~~--~G~-~vv~~~~r~~~-~~--a~~~g~~~~sl~el-l~~aDvVil~lPlt~~T~~ 112 (274)
++.+|+|||. |..|+.+.+.|.. +-. +...+.++... .. .........++++. +.++|++++++|.. .
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~~~~~~~~~~~Dvvf~a~p~~-~--- 78 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQDAAEFDWSQAQLAFFVAGRE-A--- 78 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEEEeCchhhccCCCEEEECCCHH-H---
Confidence 5678999996 9999999999987 443 33333332221 11 11111222245544 37899999999953 2
Q ss_pred hccHHHHhcC-CCCcEEEEcC
Q psy3240 113 LINRARLESM-KPGAILINTS 132 (274)
Q Consensus 113 li~~~~l~~m-k~gailINv~ 132 (274)
..+..+.+ +.|+.+||.|
T Consensus 79 --s~~~~~~~~~~g~~VIDlS 97 (336)
T PRK08040 79 --SAAYAEEATNAGCLVIDSS 97 (336)
T ss_pred --HHHHHHHHHHCCCEEEECC
Confidence 22333322 5789999998
No 400
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.39 E-value=0.39 Score=46.71 Aligned_cols=106 Identities=15% Similarity=0.240 Sum_probs=63.5
Q ss_pred CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHh--cccCEEEEcCCCCcccH------Hhc
Q psy3240 43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLC--KQSDFIIITSALTPDTH------HLI 114 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell--~~aDvVil~lPlt~~T~------~li 114 (274)
++|.|+|+|..|.++|+.|+ .|.++++.|.........+.|+.... ++.+ .++|+|+..--..+... .++
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~~~~~~~~~~gi~~~~-~~~~~~~~~d~vv~sp~i~~~~~~~~~a~~i~ 78 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KFGGVDIFDDKFTESHKDEEGNLLLP-SNDFDPNKSDLEIPSPGIPPSHPLIQKAKNLI 78 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CCCeEEEEcCCCCccchhhcCCEEec-HHHcCcCCCCEEEECCCCCCCCHHHHHHHHHh
Confidence 46899999999999999999 99987777744322212233554432 2233 46898766522222211 122
Q ss_pred cH-HHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhh
Q psy3240 115 NR-ARLESMKPGAILINTSRGQLVDQEALIDFIADIR 150 (274)
Q Consensus 115 ~~-~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~ 150 (274)
.+ +.+..+.+..+-|--+-|+.-..+-+...|+..|
T Consensus 79 ~~~e~~~~~~~~~i~ITGT~GKTTTt~ml~~iL~~~g 115 (401)
T PRK03815 79 SEYDYFYDVMPFSIWISGTNGKTTTTQMTTHLLEDFG 115 (401)
T ss_pred hHHHHHHHhcCCEEEEECCCcHHHHHHHHHHHHHHCC
Confidence 22 2333322334555556788888887777788765
No 401
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=94.39 E-value=0.21 Score=46.19 Aligned_cols=89 Identities=18% Similarity=0.242 Sum_probs=58.2
Q ss_pred CCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc------CHHHHh---cccCEEEEcCCCCccc
Q psy3240 41 QNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT------NIDDLC---KQSDFIIITSALTPDT 110 (274)
Q Consensus 41 ~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~------sl~ell---~~aDvVil~lPlt~~T 110 (274)
.|.+|.|.|.|.+|+.+++.++.+|+++++.++...+.. +.+.|+... ++.+.+ ...|+++-++....
T Consensus 163 ~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~d~vi~~~g~~~-- 240 (333)
T cd08296 163 PGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARKLGAHHYIDTSKEDVAEALQELGGAKLILATAPNAK-- 240 (333)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcCCcEEecCCCccHHHHHHhcCCCCEEEECCCchH--
Confidence 578999999999999999999999997666555433333 455565321 222222 34688887553211
Q ss_pred HHhccHHHHhcCCCCcEEEEcCCC
Q psy3240 111 HHLINRARLESMKPGAILINTSRG 134 (274)
Q Consensus 111 ~~li~~~~l~~mk~gailINv~RG 134 (274)
. -...+..++++..+++++..
T Consensus 241 --~-~~~~~~~l~~~G~~v~~g~~ 261 (333)
T cd08296 241 --A-ISALVGGLAPRGKLLILGAA 261 (333)
T ss_pred --H-HHHHHHHcccCCEEEEEecC
Confidence 1 23456778888888888653
No 402
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=94.38 E-value=0.1 Score=50.55 Aligned_cols=82 Identities=23% Similarity=0.242 Sum_probs=53.9
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHccCCCeEE-EEeCCCCCh-----------------h---Hh----hc--CCc----
Q psy3240 38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKF-LYTSRSKKP-----------------E---AD----KR--GAE---- 86 (274)
Q Consensus 38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv-~~~~r~~~~-----------------~---a~----~~--g~~---- 86 (274)
..|++++|.|||+|.+|..+|+.|...|...+ ++|...-.. . +. +. .+.
T Consensus 38 ~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~ 117 (392)
T PRK07878 38 KRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLH 117 (392)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEE
Confidence 46899999999999999999999998887544 444322110 0 00 00 111
Q ss_pred --cc---CHHHHhcccCEEEEcCCCCcccHHhccHHHHh
Q psy3240 87 --HT---NIDDLCKQSDFIIITSALTPDTHHLINRARLE 120 (274)
Q Consensus 87 --~~---sl~ell~~aDvVil~lPlt~~T~~li~~~~l~ 120 (274)
.. +..++++.+|+|+.|+- +..++.++++-...
T Consensus 118 ~~~i~~~~~~~~~~~~D~Vvd~~d-~~~~r~~ln~~~~~ 155 (392)
T PRK07878 118 EFRLDPSNAVELFSQYDLILDGTD-NFATRYLVNDAAVL 155 (392)
T ss_pred eccCChhHHHHHHhcCCEEEECCC-CHHHHHHHHHHHHH
Confidence 11 24568889999998764 56778778765543
No 403
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=94.34 E-value=0.26 Score=46.54 Aligned_cols=94 Identities=20% Similarity=0.276 Sum_probs=57.2
Q ss_pred EEEEEcc-ChHHHHHHHHHccCCC--eEEEEeCCCCChhHh--hcCC-----cc-c---CHHHHhcccCEEEEcCCCCc-
Q psy3240 44 TVGIVGC-GRIGLSVLEKLIPYKV--SKFLYTSRSKKPEAD--KRGA-----EH-T---NIDDLCKQSDFIIITSALTP- 108 (274)
Q Consensus 44 tVGIIGl-G~IG~~iA~~L~~~G~--~vv~~~~r~~~~~a~--~~g~-----~~-~---sl~ell~~aDvVil~lPlt~- 108 (274)
||+|||. |.+|..+|-.|...+. +.+.+|.+.....+. .... .. . ++.+.++.||+|+++.-...
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~ 80 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRK 80 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCC
Confidence 6899999 9999999998875553 556677554221111 1111 11 1 23678999999999876421
Q ss_pred --ccHH-hc--cH-------HHHhcCCCCcEEEEcCCCchhcH
Q psy3240 109 --DTHH-LI--NR-------ARLESMKPGAILINTSRGQLVDQ 139 (274)
Q Consensus 109 --~T~~-li--~~-------~~l~~mk~gailINv~RG~iVde 139 (274)
.+|- ++ |. +.+..-.|.+++|+++ .++|.
T Consensus 81 ~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvs--NPvDv 121 (312)
T TIGR01772 81 PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVIT--NPVNS 121 (312)
T ss_pred CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEec--Cchhh
Confidence 1221 11 11 1334446899999997 45553
No 404
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=94.32 E-value=0.34 Score=45.98 Aligned_cols=97 Identities=19% Similarity=0.241 Sum_probs=58.5
Q ss_pred CEEEEEcc-ChHHHHHHHHHccCCC-------eEEEEeCCCCC--hh--Hhh--cC-------Ccc-cCHHHHhcccCEE
Q psy3240 43 STVGIVGC-GRIGLSVLEKLIPYKV-------SKFLYTSRSKK--PE--ADK--RG-------AEH-TNIDDLCKQSDFI 100 (274)
Q Consensus 43 ktVGIIGl-G~IG~~iA~~L~~~G~-------~vv~~~~r~~~--~~--a~~--~g-------~~~-~sl~ell~~aDvV 100 (274)
.+|+|||. |.+|..+|..|...|. +.+.+|..... .. +.+ .. ... .+..+.+++||+|
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDvV 83 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVDAA 83 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCCEE
Confidence 37999998 9999999999876554 46677764321 11 111 11 111 2456889999999
Q ss_pred EEcCCCC--c-ccHHh-c--cHH-------HHhcCCC-CcEEEEcCCCchhcHHH
Q psy3240 101 IITSALT--P-DTHHL-I--NRA-------RLESMKP-GAILINTSRGQLVDQEA 141 (274)
Q Consensus 101 il~lPlt--~-~T~~l-i--~~~-------~l~~mk~-gailINv~RG~iVde~a 141 (274)
+++.-.. + +||.- + |.+ .+....| .++++.++ .++|.-.
T Consensus 84 VitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs--NPvDv~t 136 (323)
T TIGR01759 84 LLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVG--NPANTNA 136 (323)
T ss_pred EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC--CcHHHHH
Confidence 9976542 1 23321 1 111 2333344 89999986 6666554
No 405
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=94.27 E-value=0.28 Score=46.91 Aligned_cols=96 Identities=17% Similarity=0.273 Sum_probs=63.2
Q ss_pred CCCCCCCEEEEEcc---ChHHHHHHHHHc-cCCCeEEEEeCCCCC-h-h----HhhcCCc--c-cCHHHHhcccCEEEEc
Q psy3240 37 GPALQNSTVGIVGC---GRIGLSVLEKLI-PYKVSKFLYTSRSKK-P-E----ADKRGAE--H-TNIDDLCKQSDFIIIT 103 (274)
Q Consensus 37 g~~L~gktVGIIGl---G~IG~~iA~~L~-~~G~~vv~~~~r~~~-~-~----a~~~g~~--~-~sl~ell~~aDvVil~ 103 (274)
|..+.|++|+++|= +++..+++..+. .+|+++.+..+..-. + . +...|.. . .+++|+++.+|+|..-
T Consensus 154 g~~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~ 233 (338)
T PRK08192 154 GRGIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITDQLEGNLDKADILYLT 233 (338)
T ss_pred CCCcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEEc
Confidence 34699999999997 588999888766 458976666654422 1 1 1233433 2 3899999999999994
Q ss_pred CCCCc-----cc------HHhccHHHH-hcCCCCcEEEEcC
Q psy3240 104 SALTP-----DT------HHLINRARL-ESMKPGAILINTS 132 (274)
Q Consensus 104 lPlt~-----~T------~~li~~~~l-~~mk~gailINv~ 132 (274)
.--.+ .. ...++.+.+ +.+|++++|.-+.
T Consensus 234 ~~q~e~~~~~~~~~~~~~~y~v~~e~l~~~a~~~ai~mHcL 274 (338)
T PRK08192 234 RIQEERFPSQEEANKYRGKFRLNQSIYTQHCKSNTVIMHPL 274 (338)
T ss_pred CcccccccchHHHHHhhhccccCHHHHHhhhCCCCEEECCC
Confidence 21101 00 123466777 4588999988764
No 406
>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]
Probab=94.26 E-value=0.094 Score=49.67 Aligned_cols=94 Identities=22% Similarity=0.361 Sum_probs=65.7
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCcc---------------c----------CHH
Q psy3240 38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEH---------------T----------NID 91 (274)
Q Consensus 38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~---------------~----------sl~ 91 (274)
-.....++.++|+|..|-..+...+..|+-+..++-+..+.+ ....|..+ . -+.
T Consensus 160 gtv~pA~vlv~G~Gvagl~aiata~~lG~iVt~rdlrm~~Keqv~s~Ga~f~~~~~ee~~gGYAk~ms~~~~~~q~~~~a 239 (356)
T COG3288 160 GTVSPAKVLVIGAGVAGLAAIATAVRLGAIVTARDLRMFKKEQVESLGAKFLAVEDEESAGGYAKEMSEEFIAKQAELVA 239 (356)
T ss_pred ccccchhhhhhhHHHHHHHHHHHHhhcceEEehhhhhhHHhhhhhhcccccccccccccCCCccccCCHHHHHHHHHHHH
Confidence 456677889999999999999998889985555555444322 11122110 0 134
Q ss_pred HHhcccCEEEEc--CCCCcccHHhccHHHHhcCCCCcEEEEcC
Q psy3240 92 DLCKQSDFIIIT--SALTPDTHHLINRARLESMKPGAILINTS 132 (274)
Q Consensus 92 ell~~aDvVil~--lPlt~~T~~li~~~~l~~mk~gailINv~ 132 (274)
+.+++.|+|+.. +|..|. ..++.++..+.||||+++||.+
T Consensus 240 ~~~~~~DivITTAlIPGrpA-P~Lvt~~mv~sMkpGSViVDlA 281 (356)
T COG3288 240 EQAKEVDIVITTALIPGRPA-PKLVTAEMVASMKPGSVIVDLA 281 (356)
T ss_pred HHhcCCCEEEEecccCCCCC-chhhHHHHHHhcCCCcEEEEeh
Confidence 567889999875 454444 3578899999999999999986
No 407
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.22 E-value=0.27 Score=46.62 Aligned_cols=97 Identities=23% Similarity=0.276 Sum_probs=58.1
Q ss_pred CEEEEEcc-ChHHHHHHHHHccCCC-------eEEEEeCCC--CChhHh-----hc------CCcc-cCHHHHhcccCEE
Q psy3240 43 STVGIVGC-GRIGLSVLEKLIPYKV-------SKFLYTSRS--KKPEAD-----KR------GAEH-TNIDDLCKQSDFI 100 (274)
Q Consensus 43 ktVGIIGl-G~IG~~iA~~L~~~G~-------~vv~~~~r~--~~~~a~-----~~------g~~~-~sl~ell~~aDvV 100 (274)
.+|+|+|. |.+|..+|..|...|. ..+.+|... ...... .. +... .+..+.++.||+|
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiV 80 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVA 80 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEE
Confidence 37999999 9999999999875443 256666544 222110 00 0111 2567899999999
Q ss_pred EEcCCCC--c-ccHHh-c--cH-------HHHhcC-CCCcEEEEcCCCchhcHHH
Q psy3240 101 IITSALT--P-DTHHL-I--NR-------ARLESM-KPGAILINTSRGQLVDQEA 141 (274)
Q Consensus 101 il~lPlt--~-~T~~l-i--~~-------~~l~~m-k~gailINv~RG~iVde~a 141 (274)
+++.-.. + +||.- + |. ..+... +|.+++|.++ .++|.-.
T Consensus 81 VitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t 133 (323)
T cd00704 81 ILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG--NPANTNA 133 (323)
T ss_pred EEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC--CcHHHHH
Confidence 9876432 1 23221 1 11 134444 5888888885 6666554
No 408
>PRK07877 hypothetical protein; Provisional
Probab=94.18 E-value=0.14 Score=53.68 Aligned_cols=97 Identities=20% Similarity=0.249 Sum_probs=61.1
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHccCCC--eEEEEeCCCCC----------------hh---Hhh----c--CC-----
Q psy3240 38 PALQNSTVGIVGCGRIGLSVLEKLIPYKV--SKFLYTSRSKK----------------PE---ADK----R--GA----- 85 (274)
Q Consensus 38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~--~vv~~~~r~~~----------------~~---a~~----~--g~----- 85 (274)
..|++++|+|+|+| +|..+|..|...|. +.+++|...-. .+ +.+ . .+
T Consensus 103 ~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~ 181 (722)
T PRK07877 103 ERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVF 181 (722)
T ss_pred HHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEE
Confidence 35899999999999 89999999987773 34444322110 01 000 0 11
Q ss_pred ----cccCHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhc
Q psy3240 86 ----EHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVD 138 (274)
Q Consensus 86 ----~~~sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVd 138 (274)
...++++++..+|+|+-|+- +-+++.++++...+.-+ .++.-.+.++.+|
T Consensus 182 ~~~i~~~n~~~~l~~~DlVvD~~D-~~~~R~~ln~~a~~~~i--P~i~~~~~~g~~~ 235 (722)
T PRK07877 182 TDGLTEDNVDAFLDGLDVVVEECD-SLDVKVLLREAARARRI--PVLMATSDRGLLD 235 (722)
T ss_pred eccCCHHHHHHHhcCCCEEEECCC-CHHHHHHHHHHHHHcCC--CEEEEcCCCCCcC
Confidence 11257788899999999997 56888888877665433 2444444333343
No 409
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=94.17 E-value=0.16 Score=48.78 Aligned_cols=86 Identities=22% Similarity=0.347 Sum_probs=51.6
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHcc-CCCe---EEEEe-CCCCChh--HhhcCCcc--cCHHHHhcccCEEEEcCCCCccc
Q psy3240 41 QNSTVGIVGC-GRIGLSVLEKLIP-YKVS---KFLYT-SRSKKPE--ADKRGAEH--TNIDDLCKQSDFIIITSALTPDT 110 (274)
Q Consensus 41 ~gktVGIIGl-G~IG~~iA~~L~~-~G~~---vv~~~-~r~~~~~--a~~~g~~~--~sl~ell~~aDvVil~lPlt~~T 110 (274)
.+.+|||||. |..|+.+.+.|.. -.+. ...+. .++.... ........ .+.++ ++++|++++++|.. .+
T Consensus 4 ~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~~~~~-~~~~Divf~a~~~~-~s 81 (347)
T PRK06728 4 KGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKINS-FEGVDIAFFSAGGE-VS 81 (347)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeCCHHH-hcCCCEEEECCChH-HH
Confidence 3468999996 9999999999983 4443 22333 3332221 11111222 24444 47899999999853 33
Q ss_pred HHhccHHHHhcCCCCcEEEEcC
Q psy3240 111 HHLINRARLESMKPGAILINTS 132 (274)
Q Consensus 111 ~~li~~~~l~~mk~gailINv~ 132 (274)
+.+.. +. .+.|+.+||.|
T Consensus 82 ~~~~~-~~---~~~G~~VID~S 99 (347)
T PRK06728 82 RQFVN-QA---VSSGAIVIDNT 99 (347)
T ss_pred HHHHH-HH---HHCCCEEEECc
Confidence 33321 11 25789999998
No 410
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=94.13 E-value=0.14 Score=48.34 Aligned_cols=60 Identities=22% Similarity=0.382 Sum_probs=42.9
Q ss_pred EEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhH--hhcCC--cccC---HHHHhcccCEEEEc
Q psy3240 44 TVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEA--DKRGA--EHTN---IDDLCKQSDFIIIT 103 (274)
Q Consensus 44 tVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a--~~~g~--~~~s---l~ell~~aDvVil~ 103 (274)
+|||||-|..|+.+++.++.+|++++++++....+.. ....+ ...+ +.++++.||+|...
T Consensus 1 ~igiiG~gql~~~l~~aa~~lG~~v~~~d~~~~~p~~~~ad~~~~~~~~d~~~i~~~a~~~dvit~e 67 (352)
T TIGR01161 1 TVGILGGGQLGRMLALAARPLGIKVHVLDPDANSPAVQVADHVVLAPFFDPAAIRELAESCDVITFE 67 (352)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCCChhHhCceeEeCCCCCHHHHHHHHhhCCEEEeC
Confidence 5899999999999999999999988888765543331 11111 1223 66778889998653
No 411
>PRK05442 malate dehydrogenase; Provisional
Probab=94.04 E-value=0.27 Score=46.70 Aligned_cols=99 Identities=21% Similarity=0.265 Sum_probs=58.4
Q ss_pred CEEEEEcc-ChHHHHHHHHHccCCC-------eEEEEeCCCCC--hh--Hh--hc-------CCcc-cCHHHHhcccCEE
Q psy3240 43 STVGIVGC-GRIGLSVLEKLIPYKV-------SKFLYTSRSKK--PE--AD--KR-------GAEH-TNIDDLCKQSDFI 100 (274)
Q Consensus 43 ktVGIIGl-G~IG~~iA~~L~~~G~-------~vv~~~~r~~~--~~--a~--~~-------g~~~-~sl~ell~~aDvV 100 (274)
++|+|||. |.+|..+|-.|...|. +.+.+|..... .. +. .. .... .+..+.+++||+|
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~daDiV 84 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDADVA 84 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCCCEE
Confidence 48999998 9999999998764332 45667753321 11 11 00 1111 2456889999999
Q ss_pred EEcCCCC--c-ccHH-hc--cHH-------HHhc-CCCCcEEEEcCCCchhcHHHHH
Q psy3240 101 IITSALT--P-DTHH-LI--NRA-------RLES-MKPGAILINTSRGQLVDQEALI 143 (274)
Q Consensus 101 il~lPlt--~-~T~~-li--~~~-------~l~~-mk~gailINv~RG~iVde~aL~ 143 (274)
+++.-.. + ++|. ++ |.+ .+.. .++.+++|.++ .++|.-.-+
T Consensus 85 VitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs--NPvDv~t~v 139 (326)
T PRK05442 85 LLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG--NPANTNALI 139 (326)
T ss_pred EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC--CchHHHHHH
Confidence 9976531 1 2332 11 111 2233 34789999998 666665433
No 412
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=93.94 E-value=0.26 Score=45.38 Aligned_cols=88 Identities=13% Similarity=0.021 Sum_probs=59.6
Q ss_pred CCCCEEEEEc-cChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-------CHHHHh-----cccCEEEEcCC
Q psy3240 40 LQNSTVGIVG-CGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-------NIDDLC-----KQSDFIIITSA 105 (274)
Q Consensus 40 L~gktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-------sl~ell-----~~aDvVil~lP 105 (274)
-.|.+|.|.| .|.+|+.+++.++..|++++...++..+.+ +.+.|+..+ ++.+.+ ...|+|+-++.
T Consensus 137 ~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~~G 216 (325)
T TIGR02825 137 KGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDNVG 216 (325)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEEEECCC
Confidence 3588999999 599999999999999997665555443333 555665321 222222 13688887664
Q ss_pred CCcccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240 106 LTPDTHHLINRARLESMKPGAILINTSR 133 (274)
Q Consensus 106 lt~~T~~li~~~~l~~mk~gailINv~R 133 (274)
. + .+ ...++.++++..+|..+.
T Consensus 217 ~-~----~~-~~~~~~l~~~G~iv~~G~ 238 (325)
T TIGR02825 217 G-E----FS-NTVIGQMKKFGRIAICGA 238 (325)
T ss_pred H-H----HH-HHHHHHhCcCcEEEEecc
Confidence 2 1 12 466778899999998875
No 413
>PRK06128 oxidoreductase; Provisional
Probab=93.93 E-value=0.31 Score=44.65 Aligned_cols=35 Identities=20% Similarity=0.089 Sum_probs=29.9
Q ss_pred CCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeC
Q psy3240 39 ALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTS 73 (274)
Q Consensus 39 ~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~ 73 (274)
.++||++.|.|. |.||+.+|+.|...|+++++.+.
T Consensus 52 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~ 87 (300)
T PRK06128 52 RLQGRKALITGADSGIGRATAIAFAREGADIALNYL 87 (300)
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeC
Confidence 488999999985 99999999999999997665543
No 414
>PRK06182 short chain dehydrogenase; Validated
Probab=93.91 E-value=0.25 Score=44.29 Aligned_cols=66 Identities=18% Similarity=0.236 Sum_probs=43.0
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCcc-----c---CHHHHhc-------ccCEEEEc
Q psy3240 41 QNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEH-----T---NIDDLCK-------QSDFIIIT 103 (274)
Q Consensus 41 ~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~-----~---sl~ell~-------~aDvVil~ 103 (274)
.++++.|.|. |.||+.+|+.|...|+++++..++..+.. ....++.. . +++++++ ..|+|+.+
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~li~~ 81 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLASLGVHPLSLDVTDEASIKAAVDTIIAEEGRIDVLVNN 81 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEEC
Confidence 5789999995 89999999999999997766655433222 11222321 1 2333343 57999987
Q ss_pred CCC
Q psy3240 104 SAL 106 (274)
Q Consensus 104 lPl 106 (274)
...
T Consensus 82 ag~ 84 (273)
T PRK06182 82 AGY 84 (273)
T ss_pred CCc
Confidence 754
No 415
>PRK08374 homoserine dehydrogenase; Provisional
Probab=93.90 E-value=0.33 Score=46.16 Aligned_cols=105 Identities=20% Similarity=0.344 Sum_probs=56.6
Q ss_pred CEEEEEccChHHHHHHHHHcc--------CC--CeEEEEeCCCCCh--------h-H----hhcC----C------cccC
Q psy3240 43 STVGIVGCGRIGLSVLEKLIP--------YK--VSKFLYTSRSKKP--------E-A----DKRG----A------EHTN 89 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~~L~~--------~G--~~vv~~~~r~~~~--------~-a----~~~g----~------~~~s 89 (274)
.+|+|+|+|++|+.+++.|.. +| .+++...++.... . . ...+ + ...+
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFS 82 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCC
Confidence 589999999999999998865 56 5455444332110 0 0 0001 0 1126
Q ss_pred HHHHh--cccCEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchh-cHHHHHhhhhhhhhe
Q psy3240 90 IDDLC--KQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLV-DQEALIDFIADIRVI 152 (274)
Q Consensus 90 l~ell--~~aDvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iV-de~aL~~~L~~~~i~ 152 (274)
+++++ ..+|+|+-+++.. ....+ ....++.|.-+|-...|.+. ..++|.+.-+++|..
T Consensus 83 ~~ell~~~~~DVvVd~t~~~-~a~~~----~~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~ 143 (336)
T PRK08374 83 PEEIVEEIDADIVVDVTNDK-NAHEW----HLEALKEGKSVVTSNKPPIAFHYDELLDLANERNLP 143 (336)
T ss_pred HHHHHhcCCCCEEEECCCcH-HHHHH----HHHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCe
Confidence 77877 4799999887532 22222 22233455555544444332 444555544444443
No 416
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=93.85 E-value=0.21 Score=47.31 Aligned_cols=88 Identities=28% Similarity=0.288 Sum_probs=54.4
Q ss_pred CCCCEEEEEccChHHHHHHHHHccCCC-eEEEEeCCCCChh-HhhcCCccc-C-------HHHHh-----cccCEEEEcC
Q psy3240 40 LQNSTVGIVGCGRIGLSVLEKLIPYKV-SKFLYTSRSKKPE-ADKRGAEHT-N-------IDDLC-----KQSDFIIITS 104 (274)
Q Consensus 40 L~gktVGIIGlG~IG~~iA~~L~~~G~-~vv~~~~r~~~~~-a~~~g~~~~-s-------l~ell-----~~aDvVil~l 104 (274)
-.|.+|.|.|.|.||...++.++.+|+ ++++.+....+.+ +.+.|+... + +.+.+ ...|+++-++
T Consensus 184 ~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~ 263 (368)
T TIGR02818 184 EEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATDCVNPNDYDKPIQEVIVEITDGGVDYSFECI 263 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCeEEcccccchhHHHHHHHHhCCCCCEEEECC
Confidence 358999999999999999999999998 4555544443333 555665321 1 11211 1368888776
Q ss_pred CCCcccHHhccHHHHhcCCCC-cEEEEcC
Q psy3240 105 ALTPDTHHLINRARLESMKPG-AILINTS 132 (274)
Q Consensus 105 Plt~~T~~li~~~~l~~mk~g-ailINv~ 132 (274)
..... + .+.++.++++ ..++.++
T Consensus 264 G~~~~----~-~~~~~~~~~~~G~~v~~g 287 (368)
T TIGR02818 264 GNVNV----M-RAALECCHKGWGESIIIG 287 (368)
T ss_pred CCHHH----H-HHHHHHhhcCCCeEEEEe
Confidence 53111 1 3445566664 6666655
No 417
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.84 E-value=0.26 Score=46.54 Aligned_cols=95 Identities=22% Similarity=0.291 Sum_probs=58.1
Q ss_pred CEEEEEcc-ChHHHHHHHHHccCCC--eEEEEeCCCCChhHh--hcC---Ccc----c--CHHHHhcccCEEEEcCCCC-
Q psy3240 43 STVGIVGC-GRIGLSVLEKLIPYKV--SKFLYTSRSKKPEAD--KRG---AEH----T--NIDDLCKQSDFIIITSALT- 107 (274)
Q Consensus 43 ktVGIIGl-G~IG~~iA~~L~~~G~--~vv~~~~r~~~~~a~--~~g---~~~----~--sl~ell~~aDvVil~lPlt- 107 (274)
++|+|||. |.+|..+|-.|...+. +.+.+|.+.....+. ... ... . ++.+.++.||+|+++.-..
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~~ 80 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVPR 80 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCCC
Confidence 48999999 9999999999976664 456777651111111 111 111 1 2357899999999877542
Q ss_pred -c-ccHH-hc--cHH-------HHhcCCCCcEEEEcCCCchhcH
Q psy3240 108 -P-DTHH-LI--NRA-------RLESMKPGAILINTSRGQLVDQ 139 (274)
Q Consensus 108 -~-~T~~-li--~~~-------~l~~mk~gailINv~RG~iVde 139 (274)
| ++|- ++ |.+ .+..-.|.+++|+++ .++|.
T Consensus 81 k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvt--NPvDv 122 (310)
T cd01337 81 KPGMTRDDLFNINAGIVRDLATAVAKACPKALILIIS--NPVNS 122 (310)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc--Cchhh
Confidence 2 2332 22 221 344446899999997 34544
No 418
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=93.78 E-value=0.29 Score=45.20 Aligned_cols=86 Identities=13% Similarity=0.059 Sum_probs=56.9
Q ss_pred CCEEEEEcc-ChHHHHHHHHHccCCC-eEEEEeCCCCChh-Hhh-cCCccc------CHHHHh-----cccCEEEEcCCC
Q psy3240 42 NSTVGIVGC-GRIGLSVLEKLIPYKV-SKFLYTSRSKKPE-ADK-RGAEHT------NIDDLC-----KQSDFIIITSAL 106 (274)
Q Consensus 42 gktVGIIGl-G~IG~~iA~~L~~~G~-~vv~~~~r~~~~~-a~~-~g~~~~------sl~ell-----~~aDvVil~lPl 106 (274)
|.+|.|.|. |.+|+.+++.++.+|+ ++++..++..+.+ ..+ .|+... ++.+.+ ...|+|+-++..
T Consensus 155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~~gvd~vid~~g~ 234 (345)
T cd08293 155 NQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKTDNVAERLRELCPEGVDVYFDNVGG 234 (345)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCCCCceEEEECCCc
Confidence 389999998 9999999999999998 5655544433333 332 665321 333322 247888887653
Q ss_pred CcccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240 107 TPDTHHLINRARLESMKPGAILINTSR 133 (274)
Q Consensus 107 t~~T~~li~~~~l~~mk~gailINv~R 133 (274)
+ . + .+.++.++++..+|.++.
T Consensus 235 -~---~-~-~~~~~~l~~~G~iv~~G~ 255 (345)
T cd08293 235 -E---I-S-DTVISQMNENSHIILCGQ 255 (345)
T ss_pred -H---H-H-HHHHHHhccCCEEEEEee
Confidence 1 1 2 456777888888888763
No 419
>PRK12742 oxidoreductase; Provisional
Probab=93.70 E-value=0.35 Score=41.98 Aligned_cols=36 Identities=14% Similarity=0.240 Sum_probs=30.1
Q ss_pred CCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCC
Q psy3240 39 ALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSR 74 (274)
Q Consensus 39 ~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r 74 (274)
.+.||++.|.|. |.||+.+|+.|...|+++++...+
T Consensus 3 ~~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~ 39 (237)
T PRK12742 3 AFTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAG 39 (237)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCC
Confidence 478999999995 899999999999999976555443
No 420
>KOG4230|consensus
Probab=93.70 E-value=0.13 Score=52.37 Aligned_cols=79 Identities=16% Similarity=0.375 Sum_probs=61.1
Q ss_pred CCCCCCCEEEEEccCh-HHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhcc
Q psy3240 37 GPALQNSTVGIVGCGR-IGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLIN 115 (274)
Q Consensus 37 g~~L~gktVGIIGlG~-IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~ 115 (274)
+-.+.|+...++|--. +|..+|..|+.....+.+..+.++ ++.|.+.++|+|+.++-- .+++.
T Consensus 157 ~v~v~Gk~aVVlGRS~IVG~Pia~LL~~~NaTVTiCHSKT~------------~lae~v~~ADIvIvAiG~----PefVK 220 (935)
T KOG4230|consen 157 GVFVAGKNAVVLGRSKIVGSPIAALLLWANATVTICHSKTR------------NLAEKVSRADIVIVAIGQ----PEFVK 220 (935)
T ss_pred CCccccceeEEEecccccCChHHHHHHhcCceEEEecCCCc------------cHHHHhccCCEEEEEcCC----cceee
Confidence 3568999999999865 599999999988886666654332 688899999999998852 34455
Q ss_pred HHHHhcCCCCcEEEEcCCC
Q psy3240 116 RARLESMKPGAILINTSRG 134 (274)
Q Consensus 116 ~~~l~~mk~gailINv~RG 134 (274)
.++ +|||+++||++--
T Consensus 221 gdW---iKpGavVIDvGIN 236 (935)
T KOG4230|consen 221 GDW---IKPGAVVIDVGIN 236 (935)
T ss_pred ccc---ccCCcEEEEcccc
Confidence 554 5999999999843
No 421
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=93.65 E-value=0.26 Score=43.96 Aligned_cols=90 Identities=17% Similarity=0.147 Sum_probs=58.3
Q ss_pred CCCCEEEEEccChHHHHHHHHHccCCCe-EEEEeCCCCChh-HhhcC-Cccc-CHH-HH--hcccCEEEEcCCCCcccHH
Q psy3240 40 LQNSTVGIVGCGRIGLSVLEKLIPYKVS-KFLYTSRSKKPE-ADKRG-AEHT-NID-DL--CKQSDFIIITSALTPDTHH 112 (274)
Q Consensus 40 L~gktVGIIGlG~IG~~iA~~L~~~G~~-vv~~~~r~~~~~-a~~~g-~~~~-sl~-el--l~~aDvVil~lPlt~~T~~ 112 (274)
-.|.++.|.|.|.+|+.+++.++..|++ +++.+++..+.. +.+.| .... ... +. -...|+++.++....
T Consensus 96 ~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~vl~~~~~~~---- 171 (277)
T cd08255 96 RLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPADPVAADTADEIGGRGADVVIEASGSPS---- 171 (277)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCccccccchhhhcCCCCCEEEEccCChH----
Confidence 3689999999999999999999999997 555443333332 44455 2111 111 11 134788888765322
Q ss_pred hccHHHHhcCCCCcEEEEcCCC
Q psy3240 113 LINRARLESMKPGAILINTSRG 134 (274)
Q Consensus 113 li~~~~l~~mk~gailINv~RG 134 (274)
. -...++.++++..+++++-.
T Consensus 172 ~-~~~~~~~l~~~g~~~~~g~~ 192 (277)
T cd08255 172 A-LETALRLLRDRGRVVLVGWY 192 (277)
T ss_pred H-HHHHHHHhcCCcEEEEEecc
Confidence 1 24557778999999988753
No 422
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=93.65 E-value=0.35 Score=45.87 Aligned_cols=67 Identities=24% Similarity=0.298 Sum_probs=43.8
Q ss_pred CEEEEEccChHHHHHHHHHcc--CCCeEEEEeCCCCChh--Hhhc--CC-----c-ccCH---HHHhcccCEEEEcC--C
Q psy3240 43 STVGIVGCGRIGLSVLEKLIP--YKVSKFLYTSRSKKPE--ADKR--GA-----E-HTNI---DDLCKQSDFIIITS--A 105 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~~L~~--~G~~vv~~~~r~~~~~--a~~~--g~-----~-~~sl---~ell~~aDvVil~l--P 105 (274)
++|+|||.|.+|+++|-+|.. ++-+.+.+|....... +.+. .. . ...- .+.++.||+|+++. |
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitAG~p 80 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITAGVP 80 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeCCCC
Confidence 589999999999999999954 4435677776643332 1111 11 0 1111 46788999999988 5
Q ss_pred CCcc
Q psy3240 106 LTPD 109 (274)
Q Consensus 106 lt~~ 109 (274)
-.|.
T Consensus 81 rKpG 84 (313)
T COG0039 81 RKPG 84 (313)
T ss_pred CCCC
Confidence 5554
No 423
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=93.63 E-value=0.68 Score=43.39 Aligned_cols=109 Identities=13% Similarity=0.148 Sum_probs=70.2
Q ss_pred CCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCC-ChhHhhcCCcc-cCHHHHhcc--cCEEEEcCCCCcccHHhccH
Q psy3240 42 NSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSK-KPEADKRGAEH-TNIDDLCKQ--SDFIIITSALTPDTHHLINR 116 (274)
Q Consensus 42 gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~-~~~a~~~g~~~-~sl~ell~~--aDvVil~lPlt~~T~~li~~ 116 (274)
..+|.|.|. |.+|+.+.+.|..+|.+.+...++.. .. .-.|+.. .+++|+-.. .|+.++++|. +.+...+.
T Consensus 8 ~~~~~v~~~~~~~g~~~l~~l~~~g~~~v~pVnp~~~~~--~v~G~~~y~sv~dlp~~~~~DlAvi~vp~-~~v~~~l~- 83 (291)
T PRK05678 8 DTKVIVQGITGKQGTFHTEQMLAYGTNIVGGVTPGKGGT--TVLGLPVFNTVAEAVEATGANASVIYVPP-PFAADAIL- 83 (291)
T ss_pred CCeEEEeCCCchHHHHHHHHHHHCCCCEEEEECCCCCCC--eEeCeeccCCHHHHhhccCCCEEEEEcCH-HHHHHHHH-
Confidence 467999996 89999999999999886332222221 11 1235544 489999887 8999999995 34444442
Q ss_pred HHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeeh
Q psy3240 117 ARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISIS 155 (274)
Q Consensus 117 ~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D 155 (274)
+..++=-+.++++-.+- ..-+++.|.+..++.|+.++.
T Consensus 84 e~~~~gvk~avI~s~Gf-~~~~~~~l~~~a~~~girvlG 121 (291)
T PRK05678 84 EAIDAGIDLIVCITEGI-PVLDMLEVKAYLERKKTRLIG 121 (291)
T ss_pred HHHHCCCCEEEEECCCC-CHHHHHHHHHHHHHcCCEEEC
Confidence 23322123444544443 344555888988888887776
No 424
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.62 E-value=0.69 Score=45.09 Aligned_cols=108 Identities=14% Similarity=0.211 Sum_probs=65.7
Q ss_pred EEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh------HhhcCCccc---CHH-----HHhcccCEEEEcCCCCcc
Q psy3240 44 TVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE------ADKRGAEHT---NID-----DLCKQSDFIIITSALTPD 109 (274)
Q Consensus 44 tVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~------a~~~g~~~~---sl~-----ell~~aDvVil~lPlt~~ 109 (274)
+|.|||+|..|.+.|+.|...|.++.++|.+..... ....|+... ..+ +.+.+.|.|+..-...+.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s~gi~~~ 81 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVSPGIPWD 81 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEECCCCCCC
Confidence 689999999999999999999997777775433211 223455431 122 467789988884433333
Q ss_pred cHHh----------ccH-HHH-hcCCCC-cEEEEcCCCchhcHHHHHhhhhhhhh
Q psy3240 110 THHL----------INR-ARL-ESMKPG-AILINTSRGQLVDQEALIDFIADIRV 151 (274)
Q Consensus 110 T~~l----------i~~-~~l-~~mk~g-ailINv~RG~iVde~aL~~~L~~~~i 151 (274)
..-+ +.. +.+ ..+++. .+-|--+.|+.-...-|...|+..|.
T Consensus 82 ~~~~~~a~~~~i~v~~~~~~~~~~~~~~~~I~VTGT~GKTTTt~ml~~iL~~~g~ 136 (459)
T PRK02705 82 HPTLVELRERGIEVIGEIELAWRALKHIPWVGITGTNGKTTVTALLAHILQAAGL 136 (459)
T ss_pred CHHHHHHHHcCCcEEEhHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHHcCC
Confidence 2222 221 222 333333 34455556888777777777777654
No 425
>PRK15076 alpha-galactosidase; Provisional
Probab=93.62 E-value=0.13 Score=50.73 Aligned_cols=113 Identities=14% Similarity=0.158 Sum_probs=65.7
Q ss_pred CEEEEEccChHHHHHHH--HH---ccC-CCeEEEEeCCCCChh-H--------hhcCC----c-ccCHHHHhcccCEEEE
Q psy3240 43 STVGIVGCGRIGLSVLE--KL---IPY-KVSKFLYTSRSKKPE-A--------DKRGA----E-HTNIDDLCKQSDFIII 102 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~--~L---~~~-G~~vv~~~~r~~~~~-a--------~~~g~----~-~~sl~ell~~aDvVil 102 (274)
++|+|||.|.+|...+- .+ .++ +.+++.+|....+.. . ...+. . ..++.+.++.||+|+.
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv~ 81 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVIN 81 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEeE
Confidence 58999999999955443 22 233 446777776543322 1 11222 1 1267899999999999
Q ss_pred cCCCCccc-H---------------------------------Hhcc--HHHHhcCCCCcEEEEcCCCchhcHHHHHhhh
Q psy3240 103 TSALTPDT-H---------------------------------HLIN--RARLESMKPGAILINTSRGQLVDQEALIDFI 146 (274)
Q Consensus 103 ~lPlt~~T-~---------------------------------~li~--~~~l~~mk~gailINv~RG~iVde~aL~~~L 146 (274)
++-..... . .++- .+.+....|++++||.+--.-+-..++.+.-
T Consensus 82 ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP~divt~~~~~~~ 161 (431)
T PRK15076 82 AIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNPMAMNTWAMNRYP 161 (431)
T ss_pred eeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHHhcCC
Confidence 88764111 1 0110 1234445699999999876555556666442
Q ss_pred hhhhheeeh
Q psy3240 147 ADIRVISIS 155 (274)
Q Consensus 147 ~~~~i~~~D 155 (274)
+.+=++.+|
T Consensus 162 ~~rviG~c~ 170 (431)
T PRK15076 162 GIKTVGLCH 170 (431)
T ss_pred CCCEEEECC
Confidence 233344543
No 426
>PLN02827 Alcohol dehydrogenase-like
Probab=93.61 E-value=0.31 Score=46.50 Aligned_cols=89 Identities=24% Similarity=0.285 Sum_probs=55.9
Q ss_pred CCCCEEEEEccChHHHHHHHHHccCCCeEEEEeC-CCCChh-HhhcCCccc--------CHHHHhc-----ccCEEEEcC
Q psy3240 40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTS-RSKKPE-ADKRGAEHT--------NIDDLCK-----QSDFIIITS 104 (274)
Q Consensus 40 L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~-r~~~~~-a~~~g~~~~--------sl~ell~-----~aDvVil~l 104 (274)
-.|.+|.|.|.|.+|..+++.++..|+++++... ...+.+ +++.|+... +..+.+. ..|+|+-++
T Consensus 192 ~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~ 271 (378)
T PLN02827 192 SKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVTDFINPNDLSEPIQQVIKRMTGGGADYSFECV 271 (378)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEcccccchHHHHHHHHHhCCCCCEEEECC
Confidence 3589999999999999999999999986444433 333333 556666321 1112221 368888766
Q ss_pred CCCcccHHhccHHHHhcCCCC-cEEEEcCC
Q psy3240 105 ALTPDTHHLINRARLESMKPG-AILINTSR 133 (274)
Q Consensus 105 Plt~~T~~li~~~~l~~mk~g-ailINv~R 133 (274)
.... .+ ...+..+++| ..++.+|-
T Consensus 272 G~~~----~~-~~~l~~l~~g~G~iv~~G~ 296 (378)
T PLN02827 272 GDTG----IA-TTALQSCSDGWGLTVTLGV 296 (378)
T ss_pred CChH----HH-HHHHHhhccCCCEEEEECC
Confidence 5211 12 2456667777 77777663
No 427
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=93.60 E-value=0.2 Score=45.90 Aligned_cols=91 Identities=20% Similarity=0.199 Sum_probs=58.0
Q ss_pred CCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCC-Chh-HhhcCCcc-c-----CHH--HH--hcccCEEEEcCCCC
Q psy3240 40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSK-KPE-ADKRGAEH-T-----NID--DL--CKQSDFIIITSALT 107 (274)
Q Consensus 40 L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~-~~~-a~~~g~~~-~-----sl~--el--l~~aDvVil~lPlt 107 (274)
..|.+|.|+|.|.+|+.+++.+++.|++++....++. +.. ..+.++.. . +.. .. -...|+++-+++..
T Consensus 158 ~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vd~v~~~~~~~ 237 (334)
T cd08234 158 KPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPSREDPEAQKEDNPYGFDVVIEATGVP 237 (334)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCCcEEEECCCCh
Confidence 3578999999999999999999999997344333333 222 33344421 1 111 11 14579999877532
Q ss_pred cccHHhccHHHHhcCCCCcEEEEcCCCc
Q psy3240 108 PDTHHLINRARLESMKPGAILINTSRGQ 135 (274)
Q Consensus 108 ~~T~~li~~~~l~~mk~gailINv~RG~ 135 (274)
+ ...+.++.|+++..+++++...
T Consensus 238 ~-----~~~~~~~~l~~~G~~v~~g~~~ 260 (334)
T cd08234 238 K-----TLEQAIEYARRGGTVLVFGVYA 260 (334)
T ss_pred H-----HHHHHHHHHhcCCEEEEEecCC
Confidence 1 2234567788888999887644
No 428
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=93.42 E-value=0.26 Score=45.03 Aligned_cols=88 Identities=18% Similarity=0.254 Sum_probs=56.6
Q ss_pred CCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-CHHHHh--cccCEEEEcCCCCcccHHhcc
Q psy3240 40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-NIDDLC--KQSDFIIITSALTPDTHHLIN 115 (274)
Q Consensus 40 L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-sl~ell--~~aDvVil~lPlt~~T~~li~ 115 (274)
-.|.+|.|.|.|.+|+.+++.++..|.++++...+..+.+ +++.|+... +..+.. ...|+++-++..... +
T Consensus 154 ~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vid~~g~~~~----~- 228 (319)
T cd08242 154 TPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARRLGVETVLPDEAESEGGGFDVVVEATGSPSG----L- 228 (319)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEeCccccccCCCCCEEEECCCChHH----H-
Confidence 4588999999999999999999999997555544433333 445666432 222211 347888887642111 1
Q ss_pred HHHHhcCCCCcEEEEcC
Q psy3240 116 RARLESMKPGAILINTS 132 (274)
Q Consensus 116 ~~~l~~mk~gailINv~ 132 (274)
...++.++++..++..+
T Consensus 229 ~~~~~~l~~~g~~v~~~ 245 (319)
T cd08242 229 ELALRLVRPRGTVVLKS 245 (319)
T ss_pred HHHHHHhhcCCEEEEEc
Confidence 24456677777777654
No 429
>PRK10537 voltage-gated potassium channel; Provisional
Probab=93.42 E-value=0.46 Score=46.32 Aligned_cols=86 Identities=8% Similarity=0.045 Sum_probs=54.6
Q ss_pred CCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcc-----cCHH---H-HhcccCEEEEcCCCCcccH
Q psy3240 41 QNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEH-----TNID---D-LCKQSDFIIITSALTPDTH 111 (274)
Q Consensus 41 ~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~-----~sl~---e-ll~~aDvVil~lPlt~~T~ 111 (274)
...++-|+|+|.+|+.+++.|++.|.++++.++... ......+... .+.+ + -+++|+.|+++.+..+++.
T Consensus 239 ~k~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d~~-~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~dD~~Nl 317 (393)
T PRK10537 239 RKDHFIICGHSPLAINTYLGLRQRGQAVTVIVPLGL-EHRLPDDADLIPGDSSDSAVLKKAGAARARAILALRDNDADNA 317 (393)
T ss_pred cCCeEEEECCChHHHHHHHHHHHCCCCEEEEECchh-hhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCCChHHHH
Confidence 357899999999999999999988887777775422 1122233322 1222 1 2568999999888755544
Q ss_pred HhccHHHHhcCCCCcEEE
Q psy3240 112 HLINRARLESMKPGAILI 129 (274)
Q Consensus 112 ~li~~~~l~~mk~gailI 129 (274)
.++ ...+.+.|+..+|
T Consensus 318 ~iv--L~ar~l~p~~kII 333 (393)
T PRK10537 318 FVV--LAAKEMSSDVKTV 333 (393)
T ss_pred HHH--HHHHHhCCCCcEE
Confidence 433 3445556654443
No 430
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=93.42 E-value=0.071 Score=43.48 Aligned_cols=109 Identities=19% Similarity=0.244 Sum_probs=61.2
Q ss_pred CCEEEEEccChHHHHHHHHHccCCCe-EEEEeCCCCChh--Hh-------hcCCccc-----CHHHHhcccCEEEEcCCC
Q psy3240 42 NSTVGIVGCGRIGLSVLEKLIPYKVS-KFLYTSRSKKPE--AD-------KRGAEHT-----NIDDLCKQSDFIIITSAL 106 (274)
Q Consensus 42 gktVGIIGlG~IG~~iA~~L~~~G~~-vv~~~~r~~~~~--a~-------~~g~~~~-----sl~ell~~aDvVil~lPl 106 (274)
.++|.|+|+|.+|..+|+.|...|+. ..++|+..-... .. ..|...+ .+.++-+.+++.....+.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~~ 81 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEKI 81 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESHC
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeeccc
Confidence 68999999999999999999988885 455665443322 11 1122211 234444556666654444
Q ss_pred CcccHHhccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeehhhc
Q psy3240 107 TPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVT 158 (274)
Q Consensus 107 t~~T~~li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D~~~ 158 (274)
+++ .+ .+.+ ++--++|++. ...-....+.+..++.++.++++-+
T Consensus 82 ~~~---~~-~~~~---~~~d~vi~~~-d~~~~~~~l~~~~~~~~~p~i~~~~ 125 (135)
T PF00899_consen 82 DEE---NI-EELL---KDYDIVIDCV-DSLAARLLLNEICREYGIPFIDAGV 125 (135)
T ss_dssp SHH---HH-HHHH---HTSSEEEEES-SSHHHHHHHHHHHHHTT-EEEEEEE
T ss_pred ccc---cc-cccc---cCCCEEEEec-CCHHHHHHHHHHHHHcCCCEEEEEe
Confidence 221 11 2333 3334777763 3334445666666666777666554
No 431
>PRK10083 putative oxidoreductase; Provisional
Probab=93.40 E-value=0.4 Score=44.16 Aligned_cols=90 Identities=18% Similarity=0.339 Sum_probs=56.7
Q ss_pred CCCCEEEEEccChHHHHHHHHHcc-CCCeEEEEeCCCC-Chh-HhhcCCccc------CHHHHhc----ccCEEEEcCCC
Q psy3240 40 LQNSTVGIVGCGRIGLSVLEKLIP-YKVSKFLYTSRSK-KPE-ADKRGAEHT------NIDDLCK----QSDFIIITSAL 106 (274)
Q Consensus 40 L~gktVGIIGlG~IG~~iA~~L~~-~G~~vv~~~~r~~-~~~-a~~~g~~~~------sl~ell~----~aDvVil~lPl 106 (274)
-.|.+|.|.|.|.+|+.+++.++. +|+++++...+.. +.. +.+.|+... ++.+.+. +.|+|+-++..
T Consensus 159 ~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~g~~~d~vid~~g~ 238 (339)
T PRK10083 159 TEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADWVINNAQEPLGEALEEKGIKPTLIIDAACH 238 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcEEecCccccHHHHHhcCCCCCCEEEECCCC
Confidence 358899999999999999999986 6986555444333 333 455665321 2333332 23566665542
Q ss_pred CcccHHhccHHHHhcCCCCcEEEEcCCC
Q psy3240 107 TPDTHHLINRARLESMKPGAILINTSRG 134 (274)
Q Consensus 107 t~~T~~li~~~~l~~mk~gailINv~RG 134 (274)
. . .+ .+.++.++++..+|+++..
T Consensus 239 ~-~---~~-~~~~~~l~~~G~~v~~g~~ 261 (339)
T PRK10083 239 P-S---IL-EEAVTLASPAARIVLMGFS 261 (339)
T ss_pred H-H---HH-HHHHHHhhcCCEEEEEccC
Confidence 1 1 12 3456778888888888753
No 432
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=93.36 E-value=0.34 Score=44.35 Aligned_cols=89 Identities=19% Similarity=0.240 Sum_probs=58.2
Q ss_pred CCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc------CH-HHHhcccCEEEEcCCCCcccH
Q psy3240 40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT------NI-DDLCKQSDFIIITSALTPDTH 111 (274)
Q Consensus 40 L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~------sl-~ell~~aDvVil~lPlt~~T~ 111 (274)
-.|.+|.|+|.|.+|+.+++.++..|.++++..+...+.. ..+.|.... +. ...-...|+++-++....
T Consensus 161 ~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~--- 237 (330)
T cd08245 161 RPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVVSGA--- 237 (330)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCCcHH---
Confidence 3578999999999999999999999997666554443333 333444211 11 111235788888764321
Q ss_pred HhccHHHHhcCCCCcEEEEcCC
Q psy3240 112 HLINRARLESMKPGAILINTSR 133 (274)
Q Consensus 112 ~li~~~~l~~mk~gailINv~R 133 (274)
...+.+..|+++..+++++.
T Consensus 238 --~~~~~~~~l~~~G~~i~~~~ 257 (330)
T cd08245 238 --AAEAALGGLRRGGRIVLVGL 257 (330)
T ss_pred --HHHHHHHhcccCCEEEEECC
Confidence 22456778888889998864
No 433
>PLN02214 cinnamoyl-CoA reductase
Probab=93.35 E-value=0.44 Score=44.74 Aligned_cols=68 Identities=13% Similarity=0.105 Sum_probs=46.7
Q ss_pred CCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChh---Hhh-----cCCcc--------cCHHHHhcccCEEE
Q psy3240 39 ALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPE---ADK-----RGAEH--------TNIDDLCKQSDFII 101 (274)
Q Consensus 39 ~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~---a~~-----~g~~~--------~sl~ell~~aDvVi 101 (274)
.+++++|.|.|. |.||+.+++.|...|.++++..++..... ... ..+.. .+++++++.+|+|+
T Consensus 7 ~~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vi 86 (342)
T PLN02214 7 SPAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVF 86 (342)
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEE
Confidence 467899999997 99999999999999997766655433211 000 01111 14567788899988
Q ss_pred EcCCC
Q psy3240 102 ITSAL 106 (274)
Q Consensus 102 l~lPl 106 (274)
.+...
T Consensus 87 h~A~~ 91 (342)
T PLN02214 87 HTASP 91 (342)
T ss_pred EecCC
Confidence 87753
No 434
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=93.32 E-value=0.26 Score=45.81 Aligned_cols=88 Identities=24% Similarity=0.326 Sum_probs=54.0
Q ss_pred CCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCC-CCChh-HhhcCCccc------CHHHH---hc--ccC-EEEEcCC
Q psy3240 40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSR-SKKPE-ADKRGAEHT------NIDDL---CK--QSD-FIIITSA 105 (274)
Q Consensus 40 L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r-~~~~~-a~~~g~~~~------sl~el---l~--~aD-vVil~lP 105 (274)
-.|++|.|.|.|.+|..+++.++..|+++++...+ ..+.+ +++.|+... +.+++ .. ..| +|+-++.
T Consensus 159 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~v~d~~G 238 (347)
T PRK10309 159 CEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFNSREMSAPQIQSVLRELRFDQLILETAG 238 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCceEecCcccCHHHHHHHhcCCCCCeEEEECCC
Confidence 35899999999999999999999999975444333 33333 445555321 11222 21 245 6666554
Q ss_pred CCcccHHhccHHHHhcCCCCcEEEEcC
Q psy3240 106 LTPDTHHLINRARLESMKPGAILINTS 132 (274)
Q Consensus 106 lt~~T~~li~~~~l~~mk~gailINv~ 132 (274)
. + ..+ .+.++.++++..++.+|
T Consensus 239 ~-~---~~~-~~~~~~l~~~G~iv~~G 260 (347)
T PRK10309 239 V-P---QTV-ELAIEIAGPRAQLALVG 260 (347)
T ss_pred C-H---HHH-HHHHHHhhcCCEEEEEc
Confidence 2 1 122 34566778888888776
No 435
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=93.31 E-value=0.74 Score=43.49 Aligned_cols=104 Identities=17% Similarity=0.286 Sum_probs=72.6
Q ss_pred CCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChh------H----hhcCC--ccc-CHHHHhcccCEEEEcCC
Q psy3240 40 LQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPE------A----DKRGA--EHT-NIDDLCKQSDFIIITSA 105 (274)
Q Consensus 40 L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~------a----~~~g~--~~~-sl~ell~~aDvVil~lP 105 (274)
|+|+|+..+|= .+|+.++......+|+++.+..+..-.+. + .+.|. ... ++++.++.+|+|..=+.
T Consensus 151 l~g~k~a~vGDgNNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~t~d~~eAv~gADvvyTDvW 230 (310)
T COG0078 151 LKGLKLAYVGDGNNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGKITLTEDPEEAVKGADVVYTDVW 230 (310)
T ss_pred ccCcEEEEEcCcchHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEEecCHHHHhCCCCEEEecCc
Confidence 99999999995 58999999999999998777766544331 1 22243 233 89999999999998766
Q ss_pred CC--cccH-----------HhccHHHHhcCCCCcEEEEcC---CCchhcHHHHHh
Q psy3240 106 LT--PDTH-----------HLINRARLESMKPGAILINTS---RGQLVDQEALID 144 (274)
Q Consensus 106 lt--~~T~-----------~li~~~~l~~mk~gailINv~---RG~iVde~aL~~ 144 (274)
.+ ++.+ .-+|.+.++.-+++++|.-|= ||. ...+++++
T Consensus 231 vSMGee~e~~~~~~~~~~~yQVn~~lm~~a~~~~ifmHCLPA~rG~-EVTdeV~d 284 (310)
T COG0078 231 VSMGEEAEAEERRIAFLPPYQVNEELMALAGPDAIFMHCLPAHRGE-EVTDEVFE 284 (310)
T ss_pred ccCcchhhhHHHHHhhCCCceeCHHHHhhcCCCeEEEeCCCCCCCC-ccCHHHhC
Confidence 43 2221 345778888888899998873 552 33344444
No 436
>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....
Probab=93.30 E-value=0.52 Score=39.14 Aligned_cols=92 Identities=18% Similarity=0.304 Sum_probs=62.7
Q ss_pred HHHHHHccCCCeEEEEeCCCCChh------HhhcCCccc-CHHHHhcccCEEEEcCCCCcccHHhccHHHHhcCCCCcEE
Q psy3240 56 SVLEKLIPYKVSKFLYTSRSKKPE------ADKRGAEHT-NIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAIL 128 (274)
Q Consensus 56 ~iA~~L~~~G~~vv~~~~r~~~~~------a~~~g~~~~-sl~ell~~aDvVil~lPlt~~T~~li~~~~l~~mk~gail 128 (274)
..+++|...|.+ |.+-....... ..+.|+..+ +.+|++++||+|+-.=|.+ .+.++.|++|.++
T Consensus 18 ~~v~~L~~~G~~-V~VE~gaG~~a~fsD~~Y~~aGA~I~~~~~ev~~~adiIl~v~~p~--------~~e~~~l~~g~~l 88 (136)
T PF05222_consen 18 EDVKKLVKLGHE-VLVESGAGEGAGFSDEEYEEAGAEIVSRAEEVYSDADIILKVKPPS--------EEELALLKPGQTL 88 (136)
T ss_dssp HHHHHHHHTTSE-EEEETTTTGGGTB-HHHHHHTTEEEESSHHHHHTTSSEEEESS-----------GGGGGGS-TTCEE
T ss_pred HHHHHHHhCCCE-EEEECCCCCcCcccHHHHhhCCcEEecCchhhcccCCEEEEECCCC--------HHHHhhcCCCcEE
Confidence 456778888995 44444432211 345687766 4569999999999876653 4567889999999
Q ss_pred EEcCCCchhcHHHHHhhhhhhhheeehhhc
Q psy3240 129 INTSRGQLVDQEALIDFIADIRVISISMVT 158 (274)
Q Consensus 129 INv~RG~iVde~aL~~~L~~~~i~~~D~~~ 158 (274)
|-...-. ....+++.|.++++..+|+..
T Consensus 89 i~~~~~~--~~~~~~~~l~~~~it~~a~E~ 116 (136)
T PF05222_consen 89 IGFLHPA--QNKELLEALAKKGITAFALEL 116 (136)
T ss_dssp EEE--GG--GHHHHHHHHHHCTEEEEEGGG
T ss_pred EEeeccc--cCHHHHHHHHHCCCEEEEhhh
Confidence 9776544 588888999999998888655
No 437
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=93.29 E-value=0.29 Score=45.92 Aligned_cols=63 Identities=27% Similarity=0.307 Sum_probs=42.2
Q ss_pred CEEEEEcc-ChHHHHHHHHHccCCC--eEEEEeCCC--CChh--Hh-------hcCC--c--cc-CHHHHhcccCEEEEc
Q psy3240 43 STVGIVGC-GRIGLSVLEKLIPYKV--SKFLYTSRS--KKPE--AD-------KRGA--E--HT-NIDDLCKQSDFIIIT 103 (274)
Q Consensus 43 ktVGIIGl-G~IG~~iA~~L~~~G~--~vv~~~~r~--~~~~--a~-------~~g~--~--~~-sl~ell~~aDvVil~ 103 (274)
++|+|+|. |.+|..+|..|...|. +++.++... .+.. .. ..+. . .. + .+.++.||+|+++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d-~~~l~~aDiViit 79 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSD-LSDVAGSDIVIIT 79 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCC-HHHhCCCCEEEEe
Confidence 58999998 9999999999987775 366777633 2211 10 1111 1 11 4 3459999999999
Q ss_pred CCC
Q psy3240 104 SAL 106 (274)
Q Consensus 104 lPl 106 (274)
...
T Consensus 80 ag~ 82 (309)
T cd05294 80 AGV 82 (309)
T ss_pred cCC
Confidence 863
No 438
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=93.24 E-value=0.37 Score=45.34 Aligned_cols=88 Identities=17% Similarity=0.075 Sum_probs=58.9
Q ss_pred CCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChh-Hh-hcCCccc-------CHHHHhc-----ccCEEEEcC
Q psy3240 40 LQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPE-AD-KRGAEHT-------NIDDLCK-----QSDFIIITS 104 (274)
Q Consensus 40 L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~-~~g~~~~-------sl~ell~-----~aDvVil~l 104 (274)
-.|.+|.|.|. |.+|..+++.++.+|+++++.+.+..+.. .. +.|+..+ ++.+.+. ..|+++-++
T Consensus 157 ~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~v~d~v 236 (348)
T PLN03154 157 KKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDIYFDNV 236 (348)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEEEEECC
Confidence 35899999999 99999999999999997665554433333 33 4666321 2333222 368888776
Q ss_pred CCCcccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240 105 ALTPDTHHLINRARLESMKPGAILINTSR 133 (274)
Q Consensus 105 Plt~~T~~li~~~~l~~mk~gailINv~R 133 (274)
.. + . -...++.++++..++.+|-
T Consensus 237 G~-~----~-~~~~~~~l~~~G~iv~~G~ 259 (348)
T PLN03154 237 GG-D----M-LDAALLNMKIHGRIAVCGM 259 (348)
T ss_pred CH-H----H-HHHHHHHhccCCEEEEECc
Confidence 42 1 1 2456777888888888763
No 439
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.23 E-value=0.18 Score=47.52 Aligned_cols=89 Identities=22% Similarity=0.364 Sum_probs=53.7
Q ss_pred EEEEEccChHHHHHHHHHccCCC--eEEEEeCCCCChh--Hhh--c--------CCcc-cCHHHHhcccCEEEEcCCCC-
Q psy3240 44 TVGIVGCGRIGLSVLEKLIPYKV--SKFLYTSRSKKPE--ADK--R--------GAEH-TNIDDLCKQSDFIIITSALT- 107 (274)
Q Consensus 44 tVGIIGlG~IG~~iA~~L~~~G~--~vv~~~~r~~~~~--a~~--~--------g~~~-~sl~ell~~aDvVil~lPlt- 107 (274)
||+|||.|.+|..+|..|...+. +.+.+|....... +.+ . .... ..-.+.++.||+|+++.-..
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG~~~ 80 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAGPSI 80 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCCCCC
Confidence 68999999999999998865554 4667776544332 111 1 0111 12357889999999976542
Q ss_pred -c-cc---HHhc--cHH-------HHhcCCCCcEEEEcC
Q psy3240 108 -P-DT---HHLI--NRA-------RLESMKPGAILINTS 132 (274)
Q Consensus 108 -~-~T---~~li--~~~-------~l~~mk~gailINv~ 132 (274)
| .| ..++ |.+ .+..-.|++++|.++
T Consensus 81 kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvs 119 (307)
T cd05290 81 DPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILIT 119 (307)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 1 24 2232 222 233335788888775
No 440
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=93.21 E-value=0.36 Score=45.46 Aligned_cols=89 Identities=21% Similarity=0.233 Sum_probs=55.1
Q ss_pred CCCCEEEEEccChHHHHHHHHHccCCC-eEEEEeCCCCChh-HhhcCCccc-C-------HHHHhc-----ccCEEEEcC
Q psy3240 40 LQNSTVGIVGCGRIGLSVLEKLIPYKV-SKFLYTSRSKKPE-ADKRGAEHT-N-------IDDLCK-----QSDFIIITS 104 (274)
Q Consensus 40 L~gktVGIIGlG~IG~~iA~~L~~~G~-~vv~~~~r~~~~~-a~~~g~~~~-s-------l~ell~-----~aDvVil~l 104 (274)
-.|.+|.|.|.|.+|..+++.++.+|+ ++++.++...+.+ +++.|+... + +.+.++ ..|+++-++
T Consensus 186 ~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~v~~~~~~~~d~vid~~ 265 (369)
T cd08301 186 KKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGVTEFVNPKDHDKPVQEVIAEMTGGGVDYSFECT 265 (369)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcccccchhHHHHHHHHhCCCCCEEEECC
Confidence 358999999999999999999999998 4555554444333 555665321 1 112111 367777766
Q ss_pred CCCcccHHhccHHHHhcCCCC-cEEEEcCC
Q psy3240 105 ALTPDTHHLINRARLESMKPG-AILINTSR 133 (274)
Q Consensus 105 Plt~~T~~li~~~~l~~mk~g-ailINv~R 133 (274)
.... .+ ...+..++++ ..++.++.
T Consensus 266 G~~~----~~-~~~~~~~~~~~g~~v~~g~ 290 (369)
T cd08301 266 GNID----AM-ISAFECVHDGWGVTVLLGV 290 (369)
T ss_pred CChH----HH-HHHHHHhhcCCCEEEEECc
Confidence 4311 11 2345566774 67777664
No 441
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=93.21 E-value=0.43 Score=44.40 Aligned_cols=88 Identities=17% Similarity=0.285 Sum_probs=57.5
Q ss_pred CCCEEEEEccChHHHHHHHHHccCCC-eEEEEeCCCCChh-HhhcCCccc------CHH----HHhc--ccCEEEEcCCC
Q psy3240 41 QNSTVGIVGCGRIGLSVLEKLIPYKV-SKFLYTSRSKKPE-ADKRGAEHT------NID----DLCK--QSDFIIITSAL 106 (274)
Q Consensus 41 ~gktVGIIGlG~IG~~iA~~L~~~G~-~vv~~~~r~~~~~-a~~~g~~~~------sl~----ell~--~aDvVil~lPl 106 (274)
.|++|.|.|.|.+|+.+++.++..|+ ++++.+....+.. +.+.|+... ++. +... ..|+|+-+...
T Consensus 172 ~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~l~~~~~~~~~d~vid~~g~ 251 (351)
T cd08233 172 PGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEELGATIVLDPTEVDVVAEVRKLTGGGGVDVSFDCAGV 251 (351)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCccCHHHHHHHHhCCCCCCEEEECCCC
Confidence 58999999999999999999999999 4444443333322 344555321 222 2222 38999987753
Q ss_pred CcccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240 107 TPDTHHLINRARLESMKPGAILINTSR 133 (274)
Q Consensus 107 t~~T~~li~~~~l~~mk~gailINv~R 133 (274)
... + ...++.++++..++.++.
T Consensus 252 ~~~----~-~~~~~~l~~~G~~v~~g~ 273 (351)
T cd08233 252 QAT----L-DTAIDALRPRGTAVNVAI 273 (351)
T ss_pred HHH----H-HHHHHhccCCCEEEEEcc
Confidence 221 1 355677888888988875
No 442
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=93.18 E-value=0.45 Score=44.05 Aligned_cols=88 Identities=14% Similarity=0.051 Sum_probs=58.3
Q ss_pred CCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChh-Hhh-cCCccc-------CHHHHh-----cccCEEEEcC
Q psy3240 40 LQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADK-RGAEHT-------NIDDLC-----KQSDFIIITS 104 (274)
Q Consensus 40 L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~-~g~~~~-------sl~ell-----~~aDvVil~l 104 (274)
-.|.+|.|.|. |.+|+.+++.++.+|+++++..++..+.+ .++ .|+... ++.+.+ ...|+|+-++
T Consensus 150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd~v~d~~ 229 (338)
T cd08295 150 KKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGIDIYFDNV 229 (338)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCCcEEEEECC
Confidence 35899999998 99999999999999997665554443333 334 565321 222222 2468888766
Q ss_pred CCCcccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240 105 ALTPDTHHLINRARLESMKPGAILINTSR 133 (274)
Q Consensus 105 Plt~~T~~li~~~~l~~mk~gailINv~R 133 (274)
.. . . -.+.++.++++..++.++.
T Consensus 230 g~----~-~-~~~~~~~l~~~G~iv~~G~ 252 (338)
T cd08295 230 GG----K-M-LDAVLLNMNLHGRIAACGM 252 (338)
T ss_pred CH----H-H-HHHHHHHhccCcEEEEecc
Confidence 42 1 1 2356777888888888764
No 443
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=93.18 E-value=0.15 Score=45.25 Aligned_cols=65 Identities=15% Similarity=0.182 Sum_probs=44.6
Q ss_pred CEEEEEccChHHHHHHHH--HccCCCeEEEEeCCCCChh-HhhcCCccc---CHHHHhc--ccCEEEEcCCCC
Q psy3240 43 STVGIVGCGRIGLSVLEK--LIPYKVSKFLYTSRSKKPE-ADKRGAEHT---NIDDLCK--QSDFIIITSALT 107 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~~--L~~~G~~vv~~~~r~~~~~-a~~~g~~~~---sl~ell~--~aDvVil~lPlt 107 (274)
-++.|||.|++|++++.. .+..||+.+...+..+..- ..-.++... ++++.++ +.|+.++|+|..
T Consensus 85 tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~v~V~~~d~le~~v~~~dv~iaiLtVPa~ 157 (211)
T COG2344 85 TNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGDVPVYDLDDLEKFVKKNDVEIAILTVPAE 157 (211)
T ss_pred eeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCCeeeechHHHHHHHHhcCccEEEEEccHH
Confidence 368999999999999974 3478898776665544332 222233322 5666776 678999999964
No 444
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=93.18 E-value=0.62 Score=49.21 Aligned_cols=109 Identities=17% Similarity=0.241 Sum_probs=69.1
Q ss_pred CEEEEEccChHHHHH-HHHHccCCCeEEEEeCCCCChh--HhhcCCccc--CHHHHhcccCEEEEcCCCCcccHHh----
Q psy3240 43 STVGIVGCGRIGLSV-LEKLIPYKVSKFLYTSRSKKPE--ADKRGAEHT--NIDDLCKQSDFIIITSALTPDTHHL---- 113 (274)
Q Consensus 43 ktVGIIGlG~IG~~i-A~~L~~~G~~vv~~~~r~~~~~--a~~~g~~~~--sl~ell~~aDvVil~lPlt~~T~~l---- 113 (274)
+++.|+|+|..|.+. |+.|+..|+++.++|.+..... ..+.|+... ...+.+..+|+|+..-...+...-+
T Consensus 5 ~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~L~~~gi~~~~g~~~~~~~~~d~vV~SpgI~~~~p~~~~a~ 84 (809)
T PRK14573 5 LFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLKAKGARFFLGHQEEHVPEDAVVVYSSSISKDNVEYLSAK 84 (809)
T ss_pred ceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHcCCCCEEEECCCcCCCCHHHHHHH
Confidence 469999999999998 9999999998877775443222 334466542 2346677899988753333332222
Q ss_pred ------ccH-HHHhcC-CC-CcEEEEcCCCchhcHHHHHhhhhhhhh
Q psy3240 114 ------INR-ARLESM-KP-GAILINTSRGQLVDQEALIDFIADIRV 151 (274)
Q Consensus 114 ------i~~-~~l~~m-k~-gailINv~RG~iVde~aL~~~L~~~~i 151 (274)
+++ +++..+ +. ..+-|--+.|+.--..-+...|+..|.
T Consensus 85 ~~gi~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~g~ 131 (809)
T PRK14573 85 SRGNRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQEAKK 131 (809)
T ss_pred HCCCcEEeHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhCCC
Confidence 222 233332 32 245555566888888877777887664
No 445
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=93.16 E-value=2.6 Score=41.58 Aligned_cols=95 Identities=19% Similarity=0.292 Sum_probs=62.4
Q ss_pred CCCCCCCCCEEEEEccChHHHHHHHHHccCCCe--E-EEEeCC-------CC---Chh--Hhh--cCCcccCHHHHhccc
Q psy3240 35 MCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVS--K-FLYTSR-------SK---KPE--ADK--RGAEHTNIDDLCKQS 97 (274)
Q Consensus 35 ~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~--v-v~~~~r-------~~---~~~--a~~--~g~~~~sl~ell~~a 97 (274)
..|++|+..+|.+.|.|.-|-.+++.+++.|++ . +++|+. .. ... ... ..-.... ++.+..+
T Consensus 192 ~~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~~~~~-~~~~~~a 270 (432)
T COG0281 192 LTGKKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTGERTL-DLALAGA 270 (432)
T ss_pred HhCCCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCcccCCCcccccchHHHHHHHhhhccccc-cccccCC
Confidence 457899999999999999999999999999985 3 334332 11 000 000 0000111 4467778
Q ss_pred CEEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCc
Q psy3240 98 DFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQ 135 (274)
Q Consensus 98 DvVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~ 135 (274)
|+++=+-- . +++.++.++.|.+..++.=+|--.
T Consensus 271 dv~iG~S~---~--G~~t~e~V~~Ma~~PiIfalaNP~ 303 (432)
T COG0281 271 DVLIGVSG---V--GAFTEEMVKEMAKHPIIFALANPT 303 (432)
T ss_pred CEEEEcCC---C--CCcCHHHHHHhccCCEEeecCCCC
Confidence 87766321 2 778888888888888887776533
No 446
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=93.15 E-value=0.38 Score=44.96 Aligned_cols=38 Identities=32% Similarity=0.417 Sum_probs=31.6
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHccCCCeE-EEEeCCC
Q psy3240 38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSK-FLYTSRS 75 (274)
Q Consensus 38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~v-v~~~~r~ 75 (274)
+.|..++|.|+|+|.+|..+|+.|...|.+. .++|+..
T Consensus 15 ~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ 53 (286)
T cd01491 15 KKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKP 53 (286)
T ss_pred HHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Confidence 4689999999999999999999999888864 4555443
No 447
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=93.12 E-value=0.49 Score=47.89 Aligned_cols=96 Identities=20% Similarity=0.203 Sum_probs=65.8
Q ss_pred CCCCCCCEEEEEcc---ChHHHHHHHHHccCC-CeEEEEeCCCCC-hh-----HhhcCCcc---cCHHHHhcccCEE--E
Q psy3240 37 GPALQNSTVGIVGC---GRIGLSVLEKLIPYK-VSKFLYTSRSKK-PE-----ADKRGAEH---TNIDDLCKQSDFI--I 101 (274)
Q Consensus 37 g~~L~gktVGIIGl---G~IG~~iA~~L~~~G-~~vv~~~~r~~~-~~-----a~~~g~~~---~sl~ell~~aDvV--i 101 (274)
|..+.|++|++||= +++..+++..+..+| +++.+..+..-. +. +.+.|... .+++|+++.||+. .
T Consensus 169 G~~l~glkVa~vGD~~~~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p~~~~~~a~~~G~~v~i~~d~~eav~~AD~tdvw 248 (525)
T PRK13376 169 NFDNSFIHIALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELAMPEHYVEKMKKNGFEVRIFSSIEEYLSQKDVAKIW 248 (525)
T ss_pred CCCcCCCEEEEECCCCCCcHHHHHHHHHHhcCCcEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHhccCCccceE
Confidence 55689999999997 699999999999998 877666654432 11 22335432 4899999999952 2
Q ss_pred E-------cCCCC--cc-----cHHhccHHHHhcCCCCcEEEEcC
Q psy3240 102 I-------TSALT--PD-----THHLINRARLESMKPGAILINTS 132 (274)
Q Consensus 102 l-------~lPlt--~~-----T~~li~~~~l~~mk~gailINv~ 132 (274)
. .+... +. -...++++.++.+|++++|.-+.
T Consensus 249 ~~~RiQ~Ermg~~~~~~~~~~~~~y~vt~elm~~ak~~ai~MHcL 293 (525)
T PRK13376 249 YFTRLQLERMGEDILEKEHILRKAVTFRKEFLDKLPEGVKFYHPL 293 (525)
T ss_pred EEeccccccCCCccchhHHHHhcCcEECHHHHhccCCCCEEECCC
Confidence 2 12111 00 12246888999999999998864
No 448
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=93.12 E-value=1.9 Score=45.51 Aligned_cols=97 Identities=11% Similarity=0.246 Sum_probs=69.0
Q ss_pred CCCCCCCCCEEEEEccChHHHHHHHHHccCCC---eEEEEeCCC-------C-ChhHhh---cCCcccCHHHHhcccCEE
Q psy3240 35 MCGPALQNSTVGIVGCGRIGLSVLEKLIPYKV---SKFLYTSRS-------K-KPEADK---RGAEHTNIDDLCKQSDFI 100 (274)
Q Consensus 35 ~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~---~vv~~~~r~-------~-~~~a~~---~g~~~~sl~ell~~aDvV 100 (274)
..|+.+...+|.|.|.|.-|-.+|+.|...|. +.+.+|++- . -...+. ......+|.|+++.+|++
T Consensus 178 ~~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~~~~~~l~~~i~~~~v~ 257 (752)
T PRK07232 178 LVGKKIEDVKIVVSGAGAAAIACLNLLVALGAKKENIIVCDSKGVIYKGRTEGMDEWKAAYAVDTDARTLAEAIEGADVF 257 (752)
T ss_pred HhCCChhhcEEEEECccHHHHHHHHHHHHcCCCcccEEEEcCCCeecCCCcccccHHHHHHhccCCCCCHHHHHcCCCEE
Confidence 45788999999999999999999999998888 334444321 1 011111 111123899999999987
Q ss_pred EEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCch
Q psy3240 101 IITSALTPDTHHLINRARLESMKPGAILINTSRGQL 136 (274)
Q Consensus 101 il~lPlt~~T~~li~~~~l~~mk~gailINv~RG~i 136 (274)
+=. . +.++++++.++.|.+..++.=.|.-..
T Consensus 258 iG~-s----~~g~~~~~~v~~M~~~piifalsNP~~ 288 (752)
T PRK07232 258 LGL-S----AAGVLTPEMVKSMADNPIIFALANPDP 288 (752)
T ss_pred EEc-C----CCCCCCHHHHHHhccCCEEEecCCCCc
Confidence 753 1 137899999999998889888887554
No 449
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=93.11 E-value=0.36 Score=45.77 Aligned_cols=96 Identities=18% Similarity=0.205 Sum_probs=57.1
Q ss_pred EEEEEcc-ChHHHHHHHHHccCCC-------eEEEEeCCCCC--hhHhhc---C--------Cccc-CHHHHhcccCEEE
Q psy3240 44 TVGIVGC-GRIGLSVLEKLIPYKV-------SKFLYTSRSKK--PEADKR---G--------AEHT-NIDDLCKQSDFII 101 (274)
Q Consensus 44 tVGIIGl-G~IG~~iA~~L~~~G~-------~vv~~~~r~~~--~~a~~~---g--------~~~~-sl~ell~~aDvVi 101 (274)
+|+|||. |.+|..+|..|...+. +.+.+|..... ...... . .... +..+.+++||+|+
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV 80 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI 80 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence 5899999 9999999999876544 25566653332 111100 0 1111 4468899999999
Q ss_pred EcCCCCc---ccHH-hc--cH-------HHHhcC-CCCcEEEEcCCCchhcHHH
Q psy3240 102 ITSALTP---DTHH-LI--NR-------ARLESM-KPGAILINTSRGQLVDQEA 141 (274)
Q Consensus 102 l~lPlt~---~T~~-li--~~-------~~l~~m-k~gailINv~RG~iVde~a 141 (274)
++.-... +|+. ++ |. ..+... +|.+++|.++ .++|.-.
T Consensus 81 itAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvs--NPvDv~t 132 (324)
T TIGR01758 81 LVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVG--NPANTNA 132 (324)
T ss_pred EcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC--CcHHHHH
Confidence 8765421 1222 22 11 123444 5788999887 5665544
No 450
>PRK08324 short chain dehydrogenase; Validated
Probab=93.10 E-value=0.32 Score=50.27 Aligned_cols=40 Identities=18% Similarity=0.213 Sum_probs=33.4
Q ss_pred CCCCCCCEEEEEc-cChHHHHHHHHHccCCCeEEEEeCCCC
Q psy3240 37 GPALQNSTVGIVG-CGRIGLSVLEKLIPYKVSKFLYTSRSK 76 (274)
Q Consensus 37 g~~L~gktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~r~~ 76 (274)
...+.|+++.|.| .|.||+.+|+.|...|+++++.+++..
T Consensus 417 ~~~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~ 457 (681)
T PRK08324 417 PKPLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEE 457 (681)
T ss_pred CcCCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHH
Confidence 3567899999999 599999999999999997777765543
No 451
>PRK07806 short chain dehydrogenase; Provisional
Probab=93.07 E-value=0.45 Score=41.69 Aligned_cols=37 Identities=16% Similarity=0.131 Sum_probs=31.0
Q ss_pred CCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCC
Q psy3240 39 ALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRS 75 (274)
Q Consensus 39 ~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~ 75 (274)
.+.++++.|.|. |.||+.+++.|...|.++++..++.
T Consensus 3 ~~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~ 40 (248)
T PRK07806 3 DLPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQK 40 (248)
T ss_pred CCCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCc
Confidence 467899999996 9999999999999999776665543
No 452
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.05 E-value=1.2 Score=43.50 Aligned_cols=112 Identities=19% Similarity=0.218 Sum_probs=66.0
Q ss_pred CCC-CEEEEEccChHHHHHHHHHccC--CCeEEEEeCCCCChh--HhhcCCccc---CHHHHhcccCEEEEcCCCCcccH
Q psy3240 40 LQN-STVGIVGCGRIGLSVLEKLIPY--KVSKFLYTSRSKKPE--ADKRGAEHT---NIDDLCKQSDFIIITSALTPDTH 111 (274)
Q Consensus 40 L~g-ktVGIIGlG~IG~~iA~~L~~~--G~~vv~~~~r~~~~~--a~~~g~~~~---sl~ell~~aDvVil~lPlt~~T~ 111 (274)
+++ ++|.|+|+|..|.+.++.|... |+++.++|.+..... ..+.|+... .-.+.+.++|+|+..--..+...
T Consensus 4 ~~~~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~~g~~~~~g~~~~~~~~~~d~vV~SpgI~~~~p 83 (438)
T PRK04663 4 WQGIKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLPEDVELHSGGWNLEWLLEADLVVTNPGIALATP 83 (438)
T ss_pred ccCCceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhhcCCEEEeCCCChHHhccCCEEEECCCCCCCCH
Confidence 456 7899999999999999999876 576777775543221 122255441 12344578998777543322222
Q ss_pred H----------hccH-HHHhc-CCCCcEEEEcCCCchhcHHHHHhhhhhhhh
Q psy3240 112 H----------LINR-ARLES-MKPGAILINTSRGQLVDQEALIDFIADIRV 151 (274)
Q Consensus 112 ~----------li~~-~~l~~-mk~gailINv~RG~iVde~aL~~~L~~~~i 151 (274)
- ++.+ +.+.. ++...+-|--+-|+.--..-+...|+..|.
T Consensus 84 ~~~~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~g~ 135 (438)
T PRK04663 84 EIQQVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKAAGV 135 (438)
T ss_pred HHHHHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHHCCC
Confidence 1 2221 33322 333344444455887777777777776554
No 453
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=93.01 E-value=0.23 Score=36.69 Aligned_cols=33 Identities=24% Similarity=0.342 Sum_probs=29.0
Q ss_pred EEEEEccChHHHHHHHHHccCCCeEEEEeCCCC
Q psy3240 44 TVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSK 76 (274)
Q Consensus 44 tVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~ 76 (274)
+|.|||-|.+|-.+|..|+.+|.++.++.+...
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccch
Confidence 589999999999999999999998877776554
No 454
>PRK12937 short chain dehydrogenase; Provisional
Probab=93.00 E-value=0.66 Score=40.35 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=30.8
Q ss_pred CCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCC
Q psy3240 39 ALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRS 75 (274)
Q Consensus 39 ~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~ 75 (274)
.+.++++.|.|. |.||+.+|+.|...|+++++..++.
T Consensus 2 ~~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~ 39 (245)
T PRK12937 2 TLSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAGS 39 (245)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCC
Confidence 578899999985 9999999999999999766655443
No 455
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=93.00 E-value=0.44 Score=45.02 Aligned_cols=67 Identities=16% Similarity=0.258 Sum_probs=49.9
Q ss_pred CC-CCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChh--------HhhcC-Ccc-cCHHHHhcccCEEEEc
Q psy3240 37 GP-ALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPE--------ADKRG-AEH-TNIDDLCKQSDFIIIT 103 (274)
Q Consensus 37 g~-~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~--------a~~~g-~~~-~sl~ell~~aDvVil~ 103 (274)
|. .+.|++|++||- +++..+++..+..+|+++.+..+...... +...| +.. .+++++++.+|+|..-
T Consensus 147 g~~~l~g~~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~g~i~~~~d~~~av~~aDvvy~d 225 (311)
T PRK14804 147 PEIPLNQKQLTYIGVHNNVVNSLIGITAALGIHLTLVTPIAAKENIHAQTVERAKKKGTLSWEMNLHKAVSHADYVYTD 225 (311)
T ss_pred CCCCCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCCccHHHHHHHHHHHHhcCCeEEEeCHHHHhCCCCEEEee
Confidence 44 689999999997 79999999999999997777766553211 11223 222 4899999999999983
No 456
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=92.99 E-value=0.3 Score=46.08 Aligned_cols=88 Identities=25% Similarity=0.288 Sum_probs=54.8
Q ss_pred CCCCEEEEEccChHHHHHHHHHccCCCe-EEEEeCCCCChh-HhhcCCccc----C----HHHHhc-----ccCEEEEcC
Q psy3240 40 LQNSTVGIVGCGRIGLSVLEKLIPYKVS-KFLYTSRSKKPE-ADKRGAEHT----N----IDDLCK-----QSDFIIITS 104 (274)
Q Consensus 40 L~gktVGIIGlG~IG~~iA~~L~~~G~~-vv~~~~r~~~~~-a~~~g~~~~----s----l~ell~-----~aDvVil~l 104 (274)
-.|.+|.|+|.|.+|...++.++.+|++ +++.+....+.. +.+.|+... + +.+.+. .+|+|+-++
T Consensus 185 ~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~ 264 (368)
T cd08300 185 EPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGATDCVNPKDHDKPIQQVLVEMTDGGVDYTFECI 264 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCEEEcccccchHHHHHHHHHhCCCCcEEEECC
Confidence 3589999999999999999999999994 555555444443 555665321 1 222221 368888766
Q ss_pred CCCcccHHhccHHHHhcCCCC-cEEEEcC
Q psy3240 105 ALTPDTHHLINRARLESMKPG-AILINTS 132 (274)
Q Consensus 105 Plt~~T~~li~~~~l~~mk~g-ailINv~ 132 (274)
.... .+ .+.++.++++ ..++.++
T Consensus 265 g~~~----~~-~~a~~~l~~~~G~~v~~g 288 (368)
T cd08300 265 GNVK----VM-RAALEACHKGWGTSVIIG 288 (368)
T ss_pred CChH----HH-HHHHHhhccCCCeEEEEc
Confidence 4211 11 2345666665 6666655
No 457
>PRK05993 short chain dehydrogenase; Provisional
Probab=92.95 E-value=0.44 Score=42.99 Aligned_cols=36 Identities=19% Similarity=0.270 Sum_probs=29.9
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCC
Q psy3240 41 QNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSK 76 (274)
Q Consensus 41 ~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~ 76 (274)
.++++.|.|. |.||+.+|+.|...|.++++.+++..
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~ 39 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQSDGWRVFATCRKEE 39 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 3678999997 99999999999999998777665443
No 458
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=92.90 E-value=0.18 Score=48.00 Aligned_cols=84 Identities=23% Similarity=0.300 Sum_probs=49.6
Q ss_pred EEEEEc-cChHHHHHHHHHccCCCeE---EEEeCC-CCChhHhhcCCc--ccCH-HHHhcccCEEEEcCCCCcccHHhcc
Q psy3240 44 TVGIVG-CGRIGLSVLEKLIPYKVSK---FLYTSR-SKKPEADKRGAE--HTNI-DDLCKQSDFIIITSALTPDTHHLIN 115 (274)
Q Consensus 44 tVGIIG-lG~IG~~iA~~L~~~G~~v---v~~~~r-~~~~~a~~~g~~--~~sl-~ell~~aDvVil~lPlt~~T~~li~ 115 (274)
+|+||| .|.+|+.+++.|...+..+ +.+.+. +........+.. ..++ .+.++.+|+|+.|+|.. .++.+.
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~~~~~~~~D~v~~a~g~~-~s~~~a- 78 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKIESFEGIDIALFSAGGS-VSKEFA- 78 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCChHHhcCCCEEEECCCHH-HHHHHH-
Confidence 589999 6999999999998755432 222222 221111111221 1122 23458899999999964 232222
Q ss_pred HHHHhcCCCCcEEEEcC
Q psy3240 116 RARLESMKPGAILINTS 132 (274)
Q Consensus 116 ~~~l~~mk~gailINv~ 132 (274)
.+. ++.|+.+||.+
T Consensus 79 ~~~---~~~G~~VID~s 92 (339)
T TIGR01296 79 PKA---AKCGAIVIDNT 92 (339)
T ss_pred HHH---HHCCCEEEECC
Confidence 122 35688999988
No 459
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=92.77 E-value=0.86 Score=42.62 Aligned_cols=111 Identities=13% Similarity=0.119 Sum_probs=72.0
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcc-cCHHHHhcc--cCEEEEcCCCCcccHHhccH
Q psy3240 41 QNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEH-TNIDDLCKQ--SDFIIITSALTPDTHHLINR 116 (274)
Q Consensus 41 ~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~-~sl~ell~~--aDvVil~lPlt~~T~~li~~ 116 (274)
...+|.|.|. |.+|..+-+.+++.|.+.+...+.. +-...-.|... .+++|+... .|+.++++|. +.+...+.
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~~~~~~g~~~v~~V~p~-~~~~~v~G~~~y~sv~dlp~~~~~Dlavi~vpa-~~v~~~l~- 81 (286)
T TIGR01019 5 KDTKVIVQGITGSQGSFHTEQMLAYGTNIVGGVTPG-KGGTTVLGLPVFDSVKEAVEETGANASVIFVPA-PFAADAIF- 81 (286)
T ss_pred CCCcEEEecCCcHHHHHHHHHHHhCCCCEEEEECCC-CCcceecCeeccCCHHHHhhccCCCEEEEecCH-HHHHHHHH-
Confidence 3567999995 9999999999999998743333332 11122345554 389998886 6999999995 34444443
Q ss_pred HHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhheeeh
Q psy3240 117 ARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISIS 155 (274)
Q Consensus 117 ~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i~~~D 155 (274)
+..++=-+.++++--+-++ -+++.|.+..++.|+.++.
T Consensus 82 e~~~~Gvk~avIis~Gf~e-~~~~~l~~~a~~~girilG 119 (286)
T TIGR01019 82 EAIDAGIELIVCITEGIPV-HDMLKVKRYMEESGTRLIG 119 (286)
T ss_pred HHHHCCCCEEEEECCCCCH-HHHHHHHHHHHHcCCEEEC
Confidence 2332222344444444433 3678899988888887776
No 460
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=92.74 E-value=0.37 Score=45.40 Aligned_cols=89 Identities=24% Similarity=0.258 Sum_probs=56.3
Q ss_pred CCCCEEEEEccChHHHHHHHHHccCCCe-EEEEeCCCCChh-HhhcCCccc----C----HHHHh-----cccCEEEEcC
Q psy3240 40 LQNSTVGIVGCGRIGLSVLEKLIPYKVS-KFLYTSRSKKPE-ADKRGAEHT----N----IDDLC-----KQSDFIIITS 104 (274)
Q Consensus 40 L~gktVGIIGlG~IG~~iA~~L~~~G~~-vv~~~~r~~~~~-a~~~g~~~~----s----l~ell-----~~aDvVil~l 104 (274)
..|.+|.|+|.|.+|..+++.++.+|++ +++.++...+.. +.+.|+... + +.+.+ ...|+|+-++
T Consensus 183 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~g~d~vid~~ 262 (365)
T cd08277 183 EPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGATDFINPKDSDKPVSEVIREMTGGGVDYSFECT 262 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCcEeccccccchHHHHHHHHhCCCCCEEEECC
Confidence 4589999999999999999999999984 555554433333 455665321 1 11211 2378888766
Q ss_pred CCCcccHHhccHHHHhcCCCC-cEEEEcCC
Q psy3240 105 ALTPDTHHLINRARLESMKPG-AILINTSR 133 (274)
Q Consensus 105 Plt~~T~~li~~~~l~~mk~g-ailINv~R 133 (274)
... ..+ .+.++.++++ ..++.++.
T Consensus 263 g~~----~~~-~~~~~~l~~~~G~~v~~g~ 287 (365)
T cd08277 263 GNA----DLM-NEALESTKLGWGVSVVVGV 287 (365)
T ss_pred CCh----HHH-HHHHHhcccCCCEEEEEcC
Confidence 431 112 3456677764 77777764
No 461
>PLN00106 malate dehydrogenase
Probab=92.74 E-value=0.32 Score=46.23 Aligned_cols=93 Identities=20% Similarity=0.261 Sum_probs=57.3
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHccCCC--eEEEEeCCCCChhHhh---c----CCc----ccCHHHHhcccCEEEEcCCC
Q psy3240 41 QNSTVGIVGC-GRIGLSVLEKLIPYKV--SKFLYTSRSKKPEADK---R----GAE----HTNIDDLCKQSDFIIITSAL 106 (274)
Q Consensus 41 ~gktVGIIGl-G~IG~~iA~~L~~~G~--~vv~~~~r~~~~~a~~---~----g~~----~~sl~ell~~aDvVil~lPl 106 (274)
..+||+|+|. |.+|..+|..|...+. +.+.+|.......+.+ . .+. ..++.+.++.||+|+++.-.
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG~ 96 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGV 96 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCCC
Confidence 3469999999 9999999999974443 5677775542221111 0 111 11457889999999998654
Q ss_pred Cc---ccHH-hc--cH-------HHHhcCCCCcEEEEcCC
Q psy3240 107 TP---DTHH-LI--NR-------ARLESMKPGAILINTSR 133 (274)
Q Consensus 107 t~---~T~~-li--~~-------~~l~~mk~gailINv~R 133 (274)
.. .++. ++ |. +.+....|.+++++++-
T Consensus 97 ~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSN 136 (323)
T PLN00106 97 PRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISN 136 (323)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 22 2222 12 11 12333458899999874
No 462
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=92.67 E-value=0.49 Score=43.61 Aligned_cols=85 Identities=18% Similarity=0.248 Sum_probs=55.8
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc------CHHH--Hh--cccCEEEEcCCCCc
Q psy3240 41 QNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT------NIDD--LC--KQSDFIIITSALTP 108 (274)
Q Consensus 41 ~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~------sl~e--ll--~~aDvVil~lPlt~ 108 (274)
.|.+|.|.|. |.+|+.+++.++..|++++...+.. +.. +.+.|+... ...+ .. +..|+++-++.. +
T Consensus 177 ~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~-~ 254 (350)
T cd08274 177 AGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAA-KEEAVRALGADTVILRDAPLLADAKALGGEPVDVVADVVGG-P 254 (350)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCch-hhHHHHhcCCeEEEeCCCccHHHHHhhCCCCCcEEEecCCH-H
Confidence 5899999998 9999999999999999866655433 333 444554221 1111 11 247888876652 1
Q ss_pred ccHHhccHHHHhcCCCCcEEEEcC
Q psy3240 109 DTHHLINRARLESMKPGAILINTS 132 (274)
Q Consensus 109 ~T~~li~~~~l~~mk~gailINv~ 132 (274)
.-...++.++++..+|+++
T Consensus 255 -----~~~~~~~~l~~~G~~v~~g 273 (350)
T cd08274 255 -----LFPDLLRLLRPGGRYVTAG 273 (350)
T ss_pred -----HHHHHHHHhccCCEEEEec
Confidence 1235567788888888775
No 463
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=92.66 E-value=0.57 Score=43.53 Aligned_cols=88 Identities=25% Similarity=0.343 Sum_probs=56.8
Q ss_pred CCCEEEEEccChHHHHHHHHHccCCCe-EEEEeCCCCChh-HhhcCCccc------CHH----HHh--cccCEEEEcCCC
Q psy3240 41 QNSTVGIVGCGRIGLSVLEKLIPYKVS-KFLYTSRSKKPE-ADKRGAEHT------NID----DLC--KQSDFIIITSAL 106 (274)
Q Consensus 41 ~gktVGIIGlG~IG~~iA~~L~~~G~~-vv~~~~r~~~~~-a~~~g~~~~------sl~----ell--~~aDvVil~lPl 106 (274)
.|++|.|.|.|.+|..+++.++..|.+ +++.+.+..+.. +++.|+... ++. ++. +..|+++-++..
T Consensus 166 ~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~vld~~g~ 245 (351)
T cd08285 166 LGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATDIVDYKNGDVVEQILKLTGGKGVDAVIIAGGG 245 (351)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCceEecCCCCCHHHHHHHHhCCCCCcEEEECCCC
Confidence 589999999999999999999999995 444444433333 455565321 211 222 247888876653
Q ss_pred CcccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240 107 TPDTHHLINRARLESMKPGAILINTSR 133 (274)
Q Consensus 107 t~~T~~li~~~~l~~mk~gailINv~R 133 (274)
. ..+ ...++.++++..+|.++-
T Consensus 246 ~----~~~-~~~~~~l~~~G~~v~~g~ 267 (351)
T cd08285 246 Q----DTF-EQALKVLKPGGTISNVNY 267 (351)
T ss_pred H----HHH-HHHHHHhhcCCEEEEecc
Confidence 1 112 355677888888888763
No 464
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=92.62 E-value=0.43 Score=44.55 Aligned_cols=88 Identities=20% Similarity=0.262 Sum_probs=56.3
Q ss_pred CCCEEEEEccChHHHHHHHHHccCCC-eEEEEeCCCCChh-HhhcCCccc------CH-------HHHh--cccCEEEEc
Q psy3240 41 QNSTVGIVGCGRIGLSVLEKLIPYKV-SKFLYTSRSKKPE-ADKRGAEHT------NI-------DDLC--KQSDFIIIT 103 (274)
Q Consensus 41 ~gktVGIIGlG~IG~~iA~~L~~~G~-~vv~~~~r~~~~~-a~~~g~~~~------sl-------~ell--~~aDvVil~ 103 (274)
.|++|.|.|.|.+|+.+++.++.+|+ ++++.++...+.. ..+.|+... +. .++. ...|+|+-+
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~~d~vid~ 256 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFGADATIDIDELPDPQRRAIVRDITGGRGADVVIEA 256 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCCeEEcCcccccHHHHHHHHHHhCCCCCcEEEEC
Confidence 78999999999999999999999999 6555544333222 445555321 11 1111 236888876
Q ss_pred CCCCcccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240 104 SALTPDTHHLINRARLESMKPGAILINTSR 133 (274)
Q Consensus 104 lPlt~~T~~li~~~~l~~mk~gailINv~R 133 (274)
+.... . -...++.++++..++.++.
T Consensus 257 ~g~~~----~-~~~~~~~l~~~G~~v~~g~ 281 (361)
T cd08231 257 SGHPA----A-VPEGLELLRRGGTYVLVGS 281 (361)
T ss_pred CCChH----H-HHHHHHHhccCCEEEEEcC
Confidence 64211 1 2345677888888887764
No 465
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=92.54 E-value=0.73 Score=44.41 Aligned_cols=94 Identities=15% Similarity=0.170 Sum_probs=61.9
Q ss_pred CCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCC-Chh-HhhcCCccc------CHHH----Hh--cccCEEEEcCC
Q psy3240 40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSK-KPE-ADKRGAEHT------NIDD----LC--KQSDFIIITSA 105 (274)
Q Consensus 40 L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~-~~~-a~~~g~~~~------sl~e----ll--~~aDvVil~lP 105 (274)
-.|++|.|.|.|.+|..+++.++.+|+++++..++.. +.. +++.|+... ++.+ +. ...|+++-++-
T Consensus 184 ~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~Ga~~v~~~~~~~~~~~v~~~~~~~g~Dvvid~~G 263 (393)
T TIGR02819 184 GPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFGCETVDLSKDATLPEQIEQILGEPEVDCAVDCVG 263 (393)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHcCCeEEecCCcccHHHHHHHHcCCCCCcEEEECCC
Confidence 4589999999999999999999999997665544333 333 566676321 2222 22 24799988776
Q ss_pred CCcc----------cHHhccHHHHhcCCCCcEEEEcCCC
Q psy3240 106 LTPD----------THHLINRARLESMKPGAILINTSRG 134 (274)
Q Consensus 106 lt~~----------T~~li~~~~l~~mk~gailINv~RG 134 (274)
.... ....+ .+.++.++++..++.+|-.
T Consensus 264 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~G~i~~~G~~ 301 (393)
T TIGR02819 264 FEARGHGHDGKKEAPATVL-NSLMEVTRVGGAIGIPGLY 301 (393)
T ss_pred CccccccccccccchHHHH-HHHHHHhhCCCEEEEeeec
Confidence 4210 01123 3457788999999988753
No 466
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=92.52 E-value=0.6 Score=42.51 Aligned_cols=88 Identities=13% Similarity=0.047 Sum_probs=57.0
Q ss_pred CCCCEEEEEc-cChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc------CHHHHh-----cccCEEEEcCCC
Q psy3240 40 LQNSTVGIVG-CGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT------NIDDLC-----KQSDFIIITSAL 106 (274)
Q Consensus 40 L~gktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~------sl~ell-----~~aDvVil~lPl 106 (274)
-.|.+|.|.| .|.+|+.+++.++.+|++++...+...+.. .++.|+... ++.+.+ ...|+|+-++..
T Consensus 142 ~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~~~~gvd~vld~~g~ 221 (329)
T cd08294 142 KAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKELGFDAVFNYKTVSLEEALKEAAPDGIDCYFDNVGG 221 (329)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHCCCCcEEEEECCCH
Confidence 3589999999 699999999999999997665554443333 445665321 222222 235777776542
Q ss_pred CcccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240 107 TPDTHHLINRARLESMKPGAILINTSR 133 (274)
Q Consensus 107 t~~T~~li~~~~l~~mk~gailINv~R 133 (274)
+ .....++.++++..++.++.
T Consensus 222 -~-----~~~~~~~~l~~~G~iv~~g~ 242 (329)
T cd08294 222 -E-----FSSTVLSHMNDFGRVAVCGS 242 (329)
T ss_pred -H-----HHHHHHHhhccCCEEEEEcc
Confidence 1 12456777888888888764
No 467
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=92.48 E-value=0.57 Score=42.63 Aligned_cols=87 Identities=13% Similarity=0.112 Sum_probs=55.0
Q ss_pred CCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-CH----HHHh-----cccCEEEEcCCCCc
Q psy3240 41 QNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-NI----DDLC-----KQSDFIIITSALTP 108 (274)
Q Consensus 41 ~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-sl----~ell-----~~aDvVil~lPlt~ 108 (274)
.+.+|.|+|. |.+|+.+++.++..|++++..++...+.+ ..+.|+... +. .+.+ ...|+|+-++..
T Consensus 146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~vld~~g~-- 223 (326)
T cd08289 146 EQGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAADYLKKLGAKEVIPREELQEESIKPLEKQRWAGAVDPVGG-- 223 (326)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCEEEcchhHHHHHHHhhccCCcCEEEECCcH--
Confidence 3689999998 99999999999999997665554444333 445555321 11 1111 236777665532
Q ss_pred ccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240 109 DTHHLINRARLESMKPGAILINTSR 133 (274)
Q Consensus 109 ~T~~li~~~~l~~mk~gailINv~R 133 (274)
. . -...++.++++..+|.+|.
T Consensus 224 --~-~-~~~~~~~l~~~G~~i~~g~ 244 (326)
T cd08289 224 --K-T-LAYLLSTLQYGGSVAVSGL 244 (326)
T ss_pred --H-H-HHHHHHHhhcCCEEEEEee
Confidence 1 1 2355677788888888764
No 468
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=92.43 E-value=0.18 Score=48.00 Aligned_cols=30 Identities=33% Similarity=0.449 Sum_probs=23.7
Q ss_pred EEEEEccChHHHHHHHHHccC----CCeEEEEeC
Q psy3240 44 TVGIVGCGRIGLSVLEKLIPY----KVSKFLYTS 73 (274)
Q Consensus 44 tVGIIGlG~IG~~iA~~L~~~----G~~vv~~~~ 73 (274)
+|||+|+|+||+.+.+.|... +++++...+
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd 34 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNE 34 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEec
Confidence 589999999999999998754 366665554
No 469
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=92.43 E-value=0.41 Score=45.59 Aligned_cols=84 Identities=15% Similarity=0.195 Sum_probs=48.8
Q ss_pred CEEEEEc-cChHHHHHHHHHccCC-CeEEEE-eCCCCChh-Hh-h--c-----------CCcc--cCHHHHhcccCEEEE
Q psy3240 43 STVGIVG-CGRIGLSVLEKLIPYK-VSKFLY-TSRSKKPE-AD-K--R-----------GAEH--TNIDDLCKQSDFIII 102 (274)
Q Consensus 43 ktVGIIG-lG~IG~~iA~~L~~~G-~~vv~~-~~r~~~~~-a~-~--~-----------g~~~--~sl~ell~~aDvVil 102 (274)
.+|+|+| .|.+|+.+++.|.... ++.+.+ .++..... .. . . .... .+.++ +.++|+|+.
T Consensus 4 ~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~DvVf~ 82 (349)
T PRK08664 4 LKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEA-VDDVDIVFS 82 (349)
T ss_pred cEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHHH-hcCCCEEEE
Confidence 6899998 8999999999998654 344444 22211111 11 0 0 0111 23444 478999999
Q ss_pred cCCCCcccHHhccHHHHhcCCCCcEEEEcC
Q psy3240 103 TSALTPDTHHLINRARLESMKPGAILINTS 132 (274)
Q Consensus 103 ~lPlt~~T~~li~~~~l~~mk~gailINv~ 132 (274)
++|... ...+. +.+ .+.|..+|+.+
T Consensus 83 a~p~~~-s~~~~--~~~--~~~G~~vIDls 107 (349)
T PRK08664 83 ALPSDV-AGEVE--EEF--AKAGKPVFSNA 107 (349)
T ss_pred eCChhH-HHHHH--HHH--HHCCCEEEECC
Confidence 999642 22222 112 14577777776
No 470
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=92.42 E-value=0.36 Score=38.71 Aligned_cols=100 Identities=18% Similarity=0.224 Sum_probs=65.0
Q ss_pred CEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCCcccCHHHHhcccCEEEEcCCCCcccHHhccHH-HHhc
Q psy3240 43 STVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRA-RLES 121 (274)
Q Consensus 43 ktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~li~~~-~l~~ 121 (274)
|+|.|+|-|.|+..+++.++.+|.+.+..+...... +. -...||-+.. +|..+.....++.+ .++.
T Consensus 3 kkvLIanrGeia~r~~ra~r~~Gi~tv~v~s~~d~~----------s~--~~~~ad~~~~-~~~~~~~~~yl~~e~I~~i 69 (110)
T PF00289_consen 3 KKVLIANRGEIAVRIIRALRELGIETVAVNSNPDTV----------ST--HVDMADEAYF-EPPGPSPESYLNIEAIIDI 69 (110)
T ss_dssp SEEEESS-HHHHHHHHHHHHHTTSEEEEEEEGGGTT----------GH--HHHHSSEEEE-EESSSGGGTTTSHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCcceeccCchhcc----------cc--ccccccccee-cCcchhhhhhccHHHHhhH
Confidence 789999999999999999999999877665433211 11 1233565543 33222222333322 1111
Q ss_pred C-CCCcEEEEcCCCchhcHHHHHhhhhhhhheeeh
Q psy3240 122 M-KPGAILINTSRGQLVDQEALIDFIADIRVISIS 155 (274)
Q Consensus 122 m-k~gailINv~RG~iVde~aL~~~L~~~~i~~~D 155 (274)
. +.|+..+--|-|.+-...+|.+.+.+.|+.|+.
T Consensus 70 a~~~g~~~i~pGyg~lse~~~fa~~~~~~gi~fiG 104 (110)
T PF00289_consen 70 ARKEGADAIHPGYGFLSENAEFAEACEDAGIIFIG 104 (110)
T ss_dssp HHHTTESEEESTSSTTTTHHHHHHHHHHTT-EESS
T ss_pred hhhhcCcccccccchhHHHHHHHHHHHHCCCEEEC
Confidence 1 347888889999999999999998888988875
No 471
>PRK12862 malic enzyme; Reviewed
Probab=92.42 E-value=2.1 Score=45.30 Aligned_cols=95 Identities=15% Similarity=0.304 Sum_probs=69.1
Q ss_pred CCCCCCCCCEEEEEccChHHHHHHHHHccCCCe---EEEEeC-------CCC-Chh-----HhhcCCcccCHHHHhcccC
Q psy3240 35 MCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVS---KFLYTS-------RSK-KPE-----ADKRGAEHTNIDDLCKQSD 98 (274)
Q Consensus 35 ~~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~---vv~~~~-------r~~-~~~-----a~~~g~~~~sl~ell~~aD 98 (274)
..|+.|...+|.|.|.|.-|-.+|+.|...|.+ .+.+|+ |.. -.. +... ...+|.|+++.+|
T Consensus 186 ~~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~--~~~~l~e~~~~~~ 263 (763)
T PRK12862 186 LVGKDIEDVKLVASGAGAAALACLDLLVSLGVKRENIWVTDIKGVVYEGRTELMDPWKARYAQKT--DARTLAEVIEGAD 263 (763)
T ss_pred HhCCChhhcEEEEEChhHHHHHHHHHHHHcCCCcccEEEEcCCCeeeCCCCccccHHHHHHhhhc--ccCCHHHHHcCCC
Confidence 357889999999999999999999999988883 344442 211 011 1111 2248999999999
Q ss_pred EEEEcCCCCcccHHhccHHHHhcCCCCcEEEEcCCCch
Q psy3240 99 FIIITSALTPDTHHLINRARLESMKPGAILINTSRGQL 136 (274)
Q Consensus 99 vVil~lPlt~~T~~li~~~~l~~mk~gailINv~RG~i 136 (274)
+++=+- +.++++++.++.|.+..++.=.|.-..
T Consensus 264 v~iG~s-----~~g~~~~~~v~~M~~~piifalsNP~~ 296 (763)
T PRK12862 264 VFLGLS-----AAGVLKPEMVKKMAPRPLIFALANPTP 296 (763)
T ss_pred EEEEcC-----CCCCCCHHHHHHhccCCEEEeCCCCcc
Confidence 887632 137889999999998899888887554
No 472
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=92.39 E-value=0.62 Score=47.89 Aligned_cols=68 Identities=19% Similarity=0.286 Sum_probs=50.5
Q ss_pred CCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCC---------------------hh-HhhcCCcc---------c
Q psy3240 40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKK---------------------PE-ADKRGAEH---------T 88 (274)
Q Consensus 40 L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~---------------------~~-a~~~g~~~---------~ 88 (274)
..|++|.|||.|..|...|..|+..|.++++|+..... .. ....|+.. .
T Consensus 308 ~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~ 387 (639)
T PRK12809 308 PRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRDI 387 (639)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCcC
Confidence 46999999999999999999999999988888755420 11 23445431 2
Q ss_pred CHHHHhcccCEEEEcCCCC
Q psy3240 89 NIDDLCKQSDFIIITSALT 107 (274)
Q Consensus 89 sl~ell~~aDvVil~lPlt 107 (274)
+++++....|.|++++-..
T Consensus 388 ~~~~l~~~~DaV~latGa~ 406 (639)
T PRK12809 388 TFSDLTSEYDAVFIGVGTY 406 (639)
T ss_pred CHHHHHhcCCEEEEeCCCC
Confidence 5667777899999988654
No 473
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=92.35 E-value=0.66 Score=41.85 Aligned_cols=63 Identities=13% Similarity=0.188 Sum_probs=42.9
Q ss_pred EEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChhHhhcCC-----cc---cCHHHHh------cc-cCEEEEcCCCC
Q psy3240 44 TVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGA-----EH---TNIDDLC------KQ-SDFIIITSALT 107 (274)
Q Consensus 44 tVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~a~~~g~-----~~---~sl~ell------~~-aDvVil~lPlt 107 (274)
+|.|.|. |.+|+.+++.|...|.++.+..++..+... .++ .. .++.+++ +. +|.|+++.|..
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~--~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~~ 78 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAG--PNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPPI 78 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccC--CCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCCC
Confidence 4778886 999999999999999977777655432211 111 11 2455666 45 89999888754
Q ss_pred c
Q psy3240 108 P 108 (274)
Q Consensus 108 ~ 108 (274)
.
T Consensus 79 ~ 79 (285)
T TIGR03649 79 P 79 (285)
T ss_pred C
Confidence 3
No 474
>COG5495 Uncharacterized conserved protein [Function unknown]
Probab=92.34 E-value=0.27 Score=45.00 Aligned_cols=109 Identities=19% Similarity=0.206 Sum_probs=66.1
Q ss_pred CCCCCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh---HhhcCCcccCHHHHhcccCEEEEcCCCCcccHH
Q psy3240 36 CGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE---ADKRGAEHTNIDDLCKQSDFIIITSALTPDTHH 112 (274)
Q Consensus 36 ~g~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~---a~~~g~~~~sl~ell~~aDvVil~lPlt~~T~~ 112 (274)
+|-+..-..+||||.|..|+....+...-++..-....++.... +...+....+++.-.+..+++++.+|.. -
T Consensus 4 ~~~~~~~v~~~~vgtgrl~ra~~~ra~h~~~~cs~i~srS~~~a~~LaE~~~a~p~d~~~~ael~~~vfv~vpd~----~ 79 (289)
T COG5495 4 DGLRPARVVVGIVGTGRLGRAALLRADHVVVACSAISSRSRDRAQNLAETYVAPPLDVAKSAELLLLVFVDVPDA----L 79 (289)
T ss_pred cCccceeeEEEEeecchHHHHHHHHhcchheeehhhhhcCHHHHhhchhccCCCccchhhChhhhceEEecchHH----H
Confidence 34556668899999999999988888777774333344443222 2223333445555566678888888863 1
Q ss_pred hccHHHHhcCCCCcEEEEcCCCchhcHHHHHhhhhhhhh
Q psy3240 113 LINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRV 151 (274)
Q Consensus 113 li~~~~l~~mk~gailINv~RG~iVde~aL~~~L~~~~i 151 (274)
+..-..-..-+||++++.+|= .+...+.+-+...|+
T Consensus 80 ~s~vaa~~~~rpg~iv~HcSg---a~~~~il~~~gr~g~ 115 (289)
T COG5495 80 YSGVAATSLNRPGTIVAHCSG---ANGSGILAPLGRQGC 115 (289)
T ss_pred HHHHHHhcccCCCeEEEEccC---CCchhhhhhhhhcCC
Confidence 222233344579999999964 233444444444343
No 475
>PLN02427 UDP-apiose/xylose synthase
Probab=92.33 E-value=0.44 Score=45.25 Aligned_cols=70 Identities=20% Similarity=0.270 Sum_probs=47.5
Q ss_pred CCCCCCCCCEEEEEc-cChHHHHHHHHHccC-CCeEEEEeCCCCChh-Hhhc-------CCcc--------cCHHHHhcc
Q psy3240 35 MCGPALQNSTVGIVG-CGRIGLSVLEKLIPY-KVSKFLYTSRSKKPE-ADKR-------GAEH--------TNIDDLCKQ 96 (274)
Q Consensus 35 ~~g~~L~gktVGIIG-lG~IG~~iA~~L~~~-G~~vv~~~~r~~~~~-a~~~-------g~~~--------~sl~ell~~ 96 (274)
+.|+.++.++|.|.| .|-||+.+++.|... |.++++.+++..... .... +++. .++.++++.
T Consensus 7 ~~~~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~ 86 (386)
T PLN02427 7 LDGKPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKM 86 (386)
T ss_pred CCCCcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhc
Confidence 457788889999999 599999999999887 587777765432211 1111 1211 135667888
Q ss_pred cCEEEEcC
Q psy3240 97 SDFIIITS 104 (274)
Q Consensus 97 aDvVil~l 104 (274)
+|+|+-+.
T Consensus 87 ~d~ViHlA 94 (386)
T PLN02427 87 ADLTINLA 94 (386)
T ss_pred CCEEEEcc
Confidence 99887665
No 476
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=92.32 E-value=0.85 Score=41.90 Aligned_cols=91 Identities=19% Similarity=0.240 Sum_probs=59.0
Q ss_pred CCCCEEEEEccChHHHHHHHHHccCC-CeEEEEeCCCCChh-HhhcCCccc-C--------HHHHhc--ccCEEEEcCCC
Q psy3240 40 LQNSTVGIVGCGRIGLSVLEKLIPYK-VSKFLYTSRSKKPE-ADKRGAEHT-N--------IDDLCK--QSDFIIITSAL 106 (274)
Q Consensus 40 L~gktVGIIGlG~IG~~iA~~L~~~G-~~vv~~~~r~~~~~-a~~~g~~~~-s--------l~ell~--~aDvVil~lPl 106 (274)
..|++|.|.|.|.+|+.+++.++..| .+++.......+.. ..+.|+... + +.++.. ..|+++-+...
T Consensus 166 ~~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~dvvld~~g~ 245 (340)
T cd05284 166 DPGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAERLGADHVLNASDDVVEEVRELTGGRGADAVIDFVGS 245 (340)
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHhCCcEEEcCCccHHHHHHHHhCCCCCCEEEEcCCC
Confidence 35899999999999999999999998 76655544333322 444554221 1 222332 37888887653
Q ss_pred CcccHHhccHHHHhcCCCCcEEEEcCCCc
Q psy3240 107 TPDTHHLINRARLESMKPGAILINTSRGQ 135 (274)
Q Consensus 107 t~~T~~li~~~~l~~mk~gailINv~RG~ 135 (274)
.+ ...+.++.++++..++.++..+
T Consensus 246 ~~-----~~~~~~~~l~~~g~~i~~g~~~ 269 (340)
T cd05284 246 DE-----TLALAAKLLAKGGRYVIVGYGG 269 (340)
T ss_pred HH-----HHHHHHHHhhcCCEEEEEcCCC
Confidence 11 1235567788888888887544
No 477
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=92.30 E-value=0.4 Score=49.33 Aligned_cols=67 Identities=21% Similarity=0.342 Sum_probs=49.4
Q ss_pred CCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCC---------------------hh-HhhcCCcc---------c
Q psy3240 40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKK---------------------PE-ADKRGAEH---------T 88 (274)
Q Consensus 40 L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~---------------------~~-a~~~g~~~---------~ 88 (274)
-.|++|+|||.|..|.+.|..|+..|.++++++..... .. ....|++. .
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~i 404 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGKDI 404 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCCcC
Confidence 46899999999999999999999999988888754320 11 23445532 2
Q ss_pred CHHHHhcccCEEEEcCCC
Q psy3240 89 NIDDLCKQSDFIIITSAL 106 (274)
Q Consensus 89 sl~ell~~aDvVil~lPl 106 (274)
+++++....|.|++++-.
T Consensus 405 ~~~~~~~~~DavilAtGa 422 (654)
T PRK12769 405 SLESLLEDYDAVFVGVGT 422 (654)
T ss_pred CHHHHHhcCCEEEEeCCC
Confidence 456666789999998754
No 478
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=92.28 E-value=0.71 Score=41.54 Aligned_cols=89 Identities=20% Similarity=0.159 Sum_probs=55.7
Q ss_pred CCCCEEEEEccChHHHHHHHHHccCCCe-EEEEeCCCCChh-HhhcCCcc------cCHH----HHh--cccCEEEEcCC
Q psy3240 40 LQNSTVGIVGCGRIGLSVLEKLIPYKVS-KFLYTSRSKKPE-ADKRGAEH------TNID----DLC--KQSDFIIITSA 105 (274)
Q Consensus 40 L~gktVGIIGlG~IG~~iA~~L~~~G~~-vv~~~~r~~~~~-a~~~g~~~------~sl~----ell--~~aDvVil~lP 105 (274)
-.|.+|.|.|.|.+|+.+++.++..|++ +++..+...+.. ....|+.. .++. ++. ...|+++-+..
T Consensus 128 ~~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~vd~vld~~g 207 (312)
T cd08269 128 RAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALARELGATEVVTDDSEAIVERVRELTGGAGADVVIEAVG 207 (312)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEecCCCcCHHHHHHHHcCCCCCCEEEECCC
Confidence 3688999999999999999999999997 444433322222 33444421 1222 222 23788887654
Q ss_pred CCcccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240 106 LTPDTHHLINRARLESMKPGAILINTSR 133 (274)
Q Consensus 106 lt~~T~~li~~~~l~~mk~gailINv~R 133 (274)
... .....+..|+++..+++++.
T Consensus 208 ~~~-----~~~~~~~~l~~~g~~~~~g~ 230 (312)
T cd08269 208 HQW-----PLDLAGELVAERGRLVIFGY 230 (312)
T ss_pred CHH-----HHHHHHHHhccCCEEEEEcc
Confidence 211 22345677888888888864
No 479
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=92.21 E-value=0.6 Score=44.10 Aligned_cols=86 Identities=26% Similarity=0.356 Sum_probs=61.3
Q ss_pred CCEEEEEc-cChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-C-----HHHHhc------ccCEEEEcCCCC
Q psy3240 42 NSTVGIVG-CGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-N-----IDDLCK------QSDFIIITSALT 107 (274)
Q Consensus 42 gktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-s-----l~ell~------~aDvVil~lPlt 107 (274)
|.+|.|.| .|.+|....+.++++|.++++...++.+.+ +++.|+..+ + +.+.++ ..|+|+-++-.
T Consensus 143 g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D~vG~- 221 (326)
T COG0604 143 GETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGVDVVLDTVGG- 221 (326)
T ss_pred CCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCCCceEEEECCCH-
Confidence 99999999 899999999999999965666666655444 667777432 2 444332 58999996642
Q ss_pred cccHHhccHHHHhcCCCCcEEEEcCC
Q psy3240 108 PDTHHLINRARLESMKPGAILINTSR 133 (274)
Q Consensus 108 ~~T~~li~~~~l~~mk~gailINv~R 133 (274)
++ + .+.+..|+++..++.++.
T Consensus 222 -~~---~-~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 222 -DT---F-AASLAALAPGGRLVSIGA 242 (326)
T ss_pred -HH---H-HHHHHHhccCCEEEEEec
Confidence 22 2 346777888888877764
No 480
>PRK14852 hypothetical protein; Provisional
Probab=92.20 E-value=0.94 Score=49.00 Aligned_cols=207 Identities=16% Similarity=0.111 Sum_probs=101.7
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHccCCCeEEE-EeCCCCChh--Hh-------hcCCccc-----CHHHHhcccCEEEE
Q psy3240 38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFL-YTSRSKKPE--AD-------KRGAEHT-----NIDDLCKQSDFIII 102 (274)
Q Consensus 38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~-~~~r~~~~~--a~-------~~g~~~~-----sl~ell~~aDvVil 102 (274)
..|+.++|+|||+|-+|..+|+.|...|...+. .|...-... -. ..|...+ .+.++=..++|.+.
T Consensus 328 ~kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~ 407 (989)
T PRK14852 328 RRLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRSF 407 (989)
T ss_pred HHHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEE
Confidence 469999999999999999999999988875544 443222111 11 1122111 22333344555555
Q ss_pred cCCCCcccHHhccHHHHhcCCCCcEEEEcCCCchhcH-HHHHhhhhhhhheeehhhcccccccceeecCCCcccCcccee
Q psy3240 103 TSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQ-EALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAF 181 (274)
Q Consensus 103 ~lPlt~~T~~li~~~~l~~mk~gailINv~RG~iVde-~aL~~~L~~~~i~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (274)
..-.++++. .++++. --++||+.-.-..+. ..+.+...+.++-++..-.-. +++....|
T Consensus 408 ~~~I~~en~----~~fl~~---~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~~G-------------~~g~v~v~ 467 (989)
T PRK14852 408 PEGVAAETI----DAFLKD---VDLLVDGIDFFALDIRRRLFNRALELGIPVITAGPLG-------------YSCALLVF 467 (989)
T ss_pred ecCCCHHHH----HHHhhC---CCEEEECCCCccHHHHHHHHHHHHHcCCCEEEeeccc-------------cCeeEEEE
Confidence 444333321 233332 347777654322222 233333344455444421100 11111111
Q ss_pred eeeecccCCccceeeehhhhHHHhcCceeEEEeccCCCCCCCCCCccccCCcEEEccCCCCCcHHHHHHHHHHHHHHHHH
Q psy3240 182 IFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIIN 261 (274)
Q Consensus 182 ~~~~~i~~~~~~~~~~~~~~~~l~~g~i~~a~lDv~~~ep~~~~~~l~~~~nvi~tPH~~~~t~~~~~~~~~~~~~ni~~ 261 (274)
.+ -|-...++|-++-..-...|-+. .++ ...|-|..-..+...++-+.=+.+-++.-+..-.+..++...++
T Consensus 468 ~p----~~~~~~~~f~~~~~~p~~~~~~~-~~l---~~~p~~~~~~~~~~~~~~l~~~~~Ps~~~~~~l~a~~~~~~~~k 539 (989)
T PRK14852 468 MP----GGMNFDSYFGIDDDTPPMEGYLR-FGM---GLAPRPAHLGYMDRRFVSLHDRRGPSLDIACHLCAGMAATEAVR 539 (989)
T ss_pred cC----CCCCHHHhCCCCCCCchHhhhhh-hhc---cCCcchhhhcccCcccccccccCCCchHHHHHHhHHHHHHHHHH
Confidence 11 11112222222111011122222 222 22333333344555666666567777777788888889999999
Q ss_pred HHcCCCCCCcc
Q psy3240 262 TFHNKPMIYEV 272 (274)
Q Consensus 262 ~~~g~~~~~~v 272 (274)
++-|+-....+
T Consensus 540 illg~~~~~~~ 550 (989)
T PRK14852 540 ILLHRRGIRPV 550 (989)
T ss_pred HHhCCCccccC
Confidence 99998444433
No 481
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.20 E-value=0.4 Score=41.63 Aligned_cols=36 Identities=19% Similarity=0.267 Sum_probs=30.7
Q ss_pred CCCCCEEEEEc-cChHHHHHHHHHccCCCeEEEEeCC
Q psy3240 39 ALQNSTVGIVG-CGRIGLSVLEKLIPYKVSKFLYTSR 74 (274)
Q Consensus 39 ~L~gktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~r 74 (274)
++.||++.|.| .|.||+.+|+.|...|+++++.+++
T Consensus 2 ~l~~k~~lVtGas~~iG~~ia~~l~~~G~~v~~~~r~ 38 (235)
T PRK06550 2 EFMTKTVLITGAASGIGLAQARAFLAQGAQVYGVDKQ 38 (235)
T ss_pred CCCCCEEEEcCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 58899999998 4899999999999999977666554
No 482
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=92.20 E-value=0.6 Score=44.59 Aligned_cols=84 Identities=17% Similarity=0.271 Sum_probs=49.0
Q ss_pred CEEEEEcc-ChHHHHHHHHHcc--CCCeEE-EEeCCCCChh-HhhcC--Ccc--cCHHHHhcccCEEEEcCCCCcccHHh
Q psy3240 43 STVGIVGC-GRIGLSVLEKLIP--YKVSKF-LYTSRSKKPE-ADKRG--AEH--TNIDDLCKQSDFIIITSALTPDTHHL 113 (274)
Q Consensus 43 ktVGIIGl-G~IG~~iA~~L~~--~G~~vv-~~~~r~~~~~-a~~~g--~~~--~sl~ell~~aDvVil~lPlt~~T~~l 113 (274)
.+|+|+|. |.+|+.+.+.|.. +-...+ ...++..... ....+ ... .+.++ ++.+|++++++|. .....+
T Consensus 5 ~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~~~~~~l~~~~~~~~~-~~~vD~vFla~p~-~~s~~~ 82 (336)
T PRK05671 5 LDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVPFAGKNLRVREVDSFD-FSQVQLAFFAAGA-AVSRSF 82 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeeccCCcceEEeeCChHH-hcCCCEEEEcCCH-HHHHHH
Confidence 68999995 9999999999984 333222 2222221111 11111 111 23333 5889999999994 233332
Q ss_pred ccHHHHhcCCCCcEEEEcC
Q psy3240 114 INRARLESMKPGAILINTS 132 (274)
Q Consensus 114 i~~~~l~~mk~gailINv~ 132 (274)
+. +. .+.|..+||.|
T Consensus 83 v~-~~---~~~G~~VIDlS 97 (336)
T PRK05671 83 AE-KA---RAAGCSVIDLS 97 (336)
T ss_pred HH-HH---HHCCCeEEECc
Confidence 21 12 24688999998
No 483
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=92.19 E-value=0.39 Score=44.96 Aligned_cols=71 Identities=18% Similarity=0.155 Sum_probs=48.2
Q ss_pred CCCCCCCCEEEEEc-cChHHHHHHHHHccCCCeEEEEeCCCCChh--Hhh----cCCcc-----c---CHHHHhcccCEE
Q psy3240 36 CGPALQNSTVGIVG-CGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--ADK----RGAEH-----T---NIDDLCKQSDFI 100 (274)
Q Consensus 36 ~g~~L~gktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~r~~~~~--a~~----~g~~~-----~---sl~ell~~aDvV 100 (274)
.|++-++++|.|.| .|-||+.+++.|...|.++++.++...... ... ..+.. . .++++++..|+|
T Consensus 4 ~~~~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 83 (353)
T PLN02896 4 EGRESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCDGV 83 (353)
T ss_pred cccccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCCEE
Confidence 46888999999999 699999999999999997776654432211 111 11111 1 345667788988
Q ss_pred EEcCCC
Q psy3240 101 IITSAL 106 (274)
Q Consensus 101 il~lPl 106 (274)
+-+...
T Consensus 84 ih~A~~ 89 (353)
T PLN02896 84 FHVAAS 89 (353)
T ss_pred EECCcc
Confidence 776643
No 484
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=92.17 E-value=0.51 Score=43.18 Aligned_cols=89 Identities=21% Similarity=0.257 Sum_probs=57.2
Q ss_pred CCCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-CHHH-HhcccCEEEEcCCCCcccHHhcc
Q psy3240 39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-NIDD-LCKQSDFIIITSALTPDTHHLIN 115 (274)
Q Consensus 39 ~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-sl~e-ll~~aDvVil~lPlt~~T~~li~ 115 (274)
-..|.+|.|.|.|.+|+.+++.++..|.+++...+...+.. +.+.|+... +..+ .-+..|+++.+.+.. . .-
T Consensus 165 ~~~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~vD~vi~~~~~~----~-~~ 239 (329)
T cd08298 165 LKPGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELARELGADWAGDSDDLPPEPLDAAIIFAPVG----A-LV 239 (329)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHHhCCcEEeccCccCCCcccEEEEcCCcH----H-HH
Confidence 34588999999999999999999999996655554443333 455565332 2221 113467777654432 1 22
Q ss_pred HHHHhcCCCCcEEEEcC
Q psy3240 116 RARLESMKPGAILINTS 132 (274)
Q Consensus 116 ~~~l~~mk~gailINv~ 132 (274)
.+.++.++++..++..+
T Consensus 240 ~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 240 PAALRAVKKGGRVVLAG 256 (329)
T ss_pred HHHHHHhhcCCEEEEEc
Confidence 45677788888888765
No 485
>PRK06153 hypothetical protein; Provisional
Probab=92.06 E-value=0.074 Score=51.78 Aligned_cols=36 Identities=22% Similarity=0.463 Sum_probs=30.7
Q ss_pred CCCCCCEEEEEccChHHHHHHHHHccCCCeEE-EEeC
Q psy3240 38 PALQNSTVGIVGCGRIGLSVLEKLIPYKVSKF-LYTS 73 (274)
Q Consensus 38 ~~L~gktVGIIGlG~IG~~iA~~L~~~G~~vv-~~~~ 73 (274)
..|++++|+|||+|-+|..++..|...|...+ ++|.
T Consensus 172 ~kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~ 208 (393)
T PRK06153 172 AKLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDG 208 (393)
T ss_pred HHHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECC
Confidence 47999999999999999999999999998554 4443
No 486
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=92.04 E-value=0.76 Score=42.68 Aligned_cols=88 Identities=17% Similarity=0.248 Sum_probs=57.6
Q ss_pred CCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCCh-h-HhhcCCccc------CH----HHHhc--ccCEEEEcCC
Q psy3240 40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKP-E-ADKRGAEHT------NI----DDLCK--QSDFIIITSA 105 (274)
Q Consensus 40 L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~-~-a~~~g~~~~------sl----~ell~--~aDvVil~lP 105 (274)
..|.+|.|.|.|.+|+.+++.++..|+++++...+.... . ..+.|+... ++ .++.. ..|+++-+++
T Consensus 173 ~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~vdvvld~~g 252 (350)
T cd08256 173 KFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERLALARKFGADVVLNPPEVDVVEKIKELTGGYGCDIYIEATG 252 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCHHHHHHHHHcCCcEEecCCCcCHHHHHHHHhCCCCCCEEEECCC
Confidence 358899999999999999999999998665554443322 2 344554321 12 12222 3799988776
Q ss_pred CCcccHHhccHHHHhcCCCCcEEEEcC
Q psy3240 106 LTPDTHHLINRARLESMKPGAILINTS 132 (274)
Q Consensus 106 lt~~T~~li~~~~l~~mk~gailINv~ 132 (274)
... .+ ...++.++++..+|+++
T Consensus 253 ~~~----~~-~~~~~~l~~~G~~v~~g 274 (350)
T cd08256 253 HPS----AV-EQGLNMIRKLGRFVEFS 274 (350)
T ss_pred ChH----HH-HHHHHHhhcCCEEEEEc
Confidence 321 12 24577788888999886
No 487
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.98 E-value=0.61 Score=40.63 Aligned_cols=37 Identities=19% Similarity=0.195 Sum_probs=31.6
Q ss_pred CCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCC
Q psy3240 39 ALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRS 75 (274)
Q Consensus 39 ~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~ 75 (274)
+++|+++.|.|. |.||+.+|+.|.+.|+++++.+++.
T Consensus 2 ~~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~ 39 (253)
T PRK08217 2 DLKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQ 39 (253)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 478999999997 9999999999999999776665543
No 488
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=91.96 E-value=0.65 Score=45.38 Aligned_cols=65 Identities=14% Similarity=0.324 Sum_probs=47.9
Q ss_pred CCCCCEEEEEcc-----C---hHHHHHHHHHccCCCeEEEEeCCCCC--hh--------HhhcCCc--c-cCHHHHhccc
Q psy3240 39 ALQNSTVGIVGC-----G---RIGLSVLEKLIPYKVSKFLYTSRSKK--PE--------ADKRGAE--H-TNIDDLCKQS 97 (274)
Q Consensus 39 ~L~gktVGIIGl-----G---~IG~~iA~~L~~~G~~vv~~~~r~~~--~~--------a~~~g~~--~-~sl~ell~~a 97 (274)
.+.|++|+|+|- | ++.++++..+..+|+++.+..++.-. +. +...|.. . .+++++++.+
T Consensus 184 ~l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~~~~d~~eav~~a 263 (395)
T PRK07200 184 NLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFRQVNSMEEAFKDA 263 (395)
T ss_pred ccCCCEEEEEeccccccCCcchHHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence 488999999985 5 67799999999999987777665321 22 1223432 2 3899999999
Q ss_pred CEEEEc
Q psy3240 98 DFIIIT 103 (274)
Q Consensus 98 DvVil~ 103 (274)
|+|..-
T Consensus 264 DvVYtd 269 (395)
T PRK07200 264 DIVYPK 269 (395)
T ss_pred CEEEEc
Confidence 999985
No 489
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=91.91 E-value=0.61 Score=41.15 Aligned_cols=36 Identities=19% Similarity=0.208 Sum_probs=30.9
Q ss_pred CCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCC
Q psy3240 39 ALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSR 74 (274)
Q Consensus 39 ~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r 74 (274)
++.||++.|.|. |.||+.+|+.|...|+++++.+++
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~ 43 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRD 43 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCC
Confidence 688999999995 999999999999999976665543
No 490
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=91.86 E-value=0.37 Score=43.82 Aligned_cols=63 Identities=13% Similarity=0.140 Sum_probs=43.4
Q ss_pred CEEEEEc-cChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCcc--------cCHHHHhcccCEEEEcCC
Q psy3240 43 STVGIVG-CGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEH--------TNIDDLCKQSDFIIITSA 105 (274)
Q Consensus 43 ktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~--------~sl~ell~~aDvVil~lP 105 (274)
++|.|.| .|.||+.+++.|...|.++++.+++..... ....++.. .++.++++.+|+|+.+..
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~ 73 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAA 73 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEece
Confidence 4789998 599999999999999997777776543321 11122321 135567788999887764
No 491
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=91.86 E-value=0.66 Score=42.46 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=22.2
Q ss_pred CCCCEEEEEccChHHHHHHHHHccC
Q psy3240 40 LQNSTVGIVGCGRIGLSVLEKLIPY 64 (274)
Q Consensus 40 L~gktVGIIGlG~IG~~iA~~L~~~ 64 (274)
-+..+|.|||+|.+|..+++.|...
T Consensus 9 ~~~~~V~vvG~GGlGs~v~~~Lar~ 33 (244)
T TIGR03736 9 SRPVSVVLVGAGGTGSQVIAGLARL 33 (244)
T ss_pred hCCCeEEEEcCChHHHHHHHHHHHc
Confidence 3678999999999999999999765
No 492
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=91.81 E-value=0.71 Score=42.15 Aligned_cols=65 Identities=12% Similarity=0.166 Sum_probs=44.2
Q ss_pred CCCEEEEEc-cChHHHHHHHHHccCCCeEEEEeCCCCChh-H---hh-c----CCc--------ccCHHHHhcccCEEEE
Q psy3240 41 QNSTVGIVG-CGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-A---DK-R----GAE--------HTNIDDLCKQSDFIII 102 (274)
Q Consensus 41 ~gktVGIIG-lG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a---~~-~----g~~--------~~sl~ell~~aDvVil 102 (274)
+|++|.|.| .|-||+.+++.|...|.++++..++..... . .. . .+. ..+++++++.+|+|+.
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 82 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFH 82 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEE
Confidence 368999999 699999999999999997766655433211 1 00 0 111 1146677888998877
Q ss_pred cCC
Q psy3240 103 TSA 105 (274)
Q Consensus 103 ~lP 105 (274)
+..
T Consensus 83 ~A~ 85 (322)
T PLN02662 83 TAS 85 (322)
T ss_pred eCC
Confidence 664
No 493
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=91.79 E-value=0.93 Score=41.87 Aligned_cols=90 Identities=18% Similarity=0.222 Sum_probs=58.8
Q ss_pred CCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-------CHHH----Hhc-ccCEEEEcCCC
Q psy3240 40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-------NIDD----LCK-QSDFIIITSAL 106 (274)
Q Consensus 40 L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-------sl~e----ll~-~aDvVil~lPl 106 (274)
-.|++|.|.|.|.+|+.+++.++..|+++++...+..+.. ..+.|+... ++.+ +.. ..|+++-++..
T Consensus 164 ~~~~~vlV~g~g~vg~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~d~vi~~~g~ 243 (345)
T cd08260 164 KPGEWVAVHGCGGVGLSAVMIASALGARVIAVDIDDDKLELARELGAVATVNASEVEDVAAAVRDLTGGGAHVSVDALGI 243 (345)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHhCCCEEEccccchhHHHHHHHHhCCCCCEEEEcCCC
Confidence 3578999999999999999999999997666655444333 444555211 1111 111 47888877652
Q ss_pred CcccHHhccHHHHhcCCCCcEEEEcCCC
Q psy3240 107 TPDTHHLINRARLESMKPGAILINTSRG 134 (274)
Q Consensus 107 t~~T~~li~~~~l~~mk~gailINv~RG 134 (274)
. . . -...++.|+++..+++++..
T Consensus 244 ~-~---~-~~~~~~~l~~~g~~i~~g~~ 266 (345)
T cd08260 244 P-E---T-CRNSVASLRKRGRHVQVGLT 266 (345)
T ss_pred H-H---H-HHHHHHHhhcCCEEEEeCCc
Confidence 1 1 1 22456778888899988753
No 494
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=91.75 E-value=0.95 Score=42.63 Aligned_cols=89 Identities=17% Similarity=0.279 Sum_probs=58.1
Q ss_pred CCCEEEEEccChHHHHHHHHHccCCCe-EEEEeCCCCChh-HhhcCCccc------CHHHHh-----cccCEEEEcCCCC
Q psy3240 41 QNSTVGIVGCGRIGLSVLEKLIPYKVS-KFLYTSRSKKPE-ADKRGAEHT------NIDDLC-----KQSDFIIITSALT 107 (274)
Q Consensus 41 ~gktVGIIGlG~IG~~iA~~L~~~G~~-vv~~~~r~~~~~-a~~~g~~~~------sl~ell-----~~aDvVil~lPlt 107 (274)
.|++|.|.|.|.+|..+++.++..|.+ +++.+....+.. +.+.|+... ++.+.+ ...|+|+-++...
T Consensus 186 ~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~~~~i~~~~~~~~~~v~~~~~~~~d~vld~~g~~ 265 (365)
T cd08278 186 PGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGATHVINPKEEDLVAAIREITGGGVDYALDTTGVP 265 (365)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCcEEecCCCcCHHHHHHHHhCCCCcEEEECCCCc
Confidence 589999999999999999999999995 444444333333 344554221 222222 3478888877532
Q ss_pred cccHHhccHHHHhcCCCCcEEEEcCCC
Q psy3240 108 PDTHHLINRARLESMKPGAILINTSRG 134 (274)
Q Consensus 108 ~~T~~li~~~~l~~mk~gailINv~RG 134 (274)
+ .+ ...++.++++..+|.++..
T Consensus 266 ~----~~-~~~~~~l~~~G~~v~~g~~ 287 (365)
T cd08278 266 A----VI-EQAVDALAPRGTLALVGAP 287 (365)
T ss_pred H----HH-HHHHHHhccCCEEEEeCcC
Confidence 1 12 3567778888899988754
No 495
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=91.75 E-value=0.62 Score=39.39 Aligned_cols=63 Identities=10% Similarity=0.020 Sum_probs=42.1
Q ss_pred EEEEEccChHHHHHHHHHccCCCeEEEEeCCCCChh-HhhcCCccc-CHH---HHhcccCEEEEcCCC
Q psy3240 44 TVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT-NID---DLCKQSDFIIITSAL 106 (274)
Q Consensus 44 tVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~~~g~~~~-sl~---ell~~aDvVil~lPl 106 (274)
++.|+|.|..|+.+++.|+..|++++.+-+...... ..-.|.... +.+ +..++.+.++++++.
T Consensus 1 ~~~I~Gag~~g~~~~~~l~~~g~~vvgfid~~~~~~~~~i~g~pvlg~~~~l~~~~~~~~~~iiai~~ 68 (201)
T TIGR03570 1 KLVIIGAGGHGRVVADIAEDSGWEIVGFLDDNPALQGTSVDGLPVLGGDEDLLRYPPDEVDLVVAIGD 68 (201)
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCEEEEEEcCCccccCcccCCccEECCHHHHhhhcccccEEEEEcCC
Confidence 378999999999999999999998777655433221 222344332 333 334456788888873
No 496
>KOG0022|consensus
Probab=91.62 E-value=0.27 Score=46.84 Aligned_cols=48 Identities=29% Similarity=0.333 Sum_probs=38.0
Q ss_pred CCCCEEEEEccChHHHHHHHHHccCCCeEEE-EeCCCCChh-HhhcCCcc
Q psy3240 40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFL-YTSRSKKPE-ADKRGAEH 87 (274)
Q Consensus 40 L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~-~~~r~~~~~-a~~~g~~~ 87 (274)
=.|++++|+|+|.+|.++++-++++|+..++ .|-+..+-+ ++++|++.
T Consensus 191 ~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe 240 (375)
T KOG0022|consen 191 EPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATE 240 (375)
T ss_pred CCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcce
Confidence 3689999999999999999999999986554 555544444 77888753
No 497
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=91.56 E-value=0.49 Score=42.12 Aligned_cols=69 Identities=17% Similarity=0.247 Sum_probs=45.3
Q ss_pred CCCCCCEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChh-Hh--hcCCcc---------cCHHHHh-cccCEEEEc
Q psy3240 38 PALQNSTVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPE-AD--KRGAEH---------TNIDDLC-KQSDFIIIT 103 (274)
Q Consensus 38 ~~L~gktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~-a~--~~g~~~---------~sl~ell-~~aDvVil~ 103 (274)
....+++|.|+|. |.||+.+++.|...|.++++..++..+.. .. ..++.. .++.+.+ ..+|+|+.+
T Consensus 13 ~~~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~vi~~ 92 (251)
T PLN00141 13 ENVKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDDSDAVICA 92 (251)
T ss_pred ccccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhcCCCEEEEC
Confidence 4677899999995 99999999999988997666654433211 11 112221 1233445 578999987
Q ss_pred CCC
Q psy3240 104 SAL 106 (274)
Q Consensus 104 lPl 106 (274)
.+.
T Consensus 93 ~g~ 95 (251)
T PLN00141 93 TGF 95 (251)
T ss_pred CCC
Confidence 664
No 498
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=91.52 E-value=1 Score=40.00 Aligned_cols=65 Identities=15% Similarity=0.174 Sum_probs=47.2
Q ss_pred CEEEEEcc-ChHHHHHHHHHccCCCeEEEEeCCCCChhH-hhcCC------cccCHHHHhcccCEEEEcCCCC
Q psy3240 43 STVGIVGC-GRIGLSVLEKLIPYKVSKFLYTSRSKKPEA-DKRGA------EHTNIDDLCKQSDFIIITSALT 107 (274)
Q Consensus 43 ktVGIIGl-G~IG~~iA~~L~~~G~~vv~~~~r~~~~~a-~~~g~------~~~sl~ell~~aDvVil~lPlt 107 (274)
++|+|||. |.+|+.+++-++..|.+++...+...+..+ ....+ ...++.+.+...|+|+.+.-..
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~ 73 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFGAG 73 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEeccCC
Confidence 58999996 999999999999999988877766554432 11111 1124557888999999987654
No 499
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=91.49 E-value=1.5 Score=45.39 Aligned_cols=68 Identities=19% Similarity=0.315 Sum_probs=49.1
Q ss_pred CCCCEEEEEccChHHHHHHHHHccCCCeEEEEeCCCCC---------------------hh-HhhcCCcc---------c
Q psy3240 40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKK---------------------PE-ADKRGAEH---------T 88 (274)
Q Consensus 40 L~gktVGIIGlG~IG~~iA~~L~~~G~~vv~~~~r~~~---------------------~~-a~~~g~~~---------~ 88 (274)
-.+++|.|||.|..|...|..|+..|.++++++..... .. ....|++. .
T Consensus 191 ~~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~~dv 270 (652)
T PRK12814 191 KSGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFGRDI 270 (652)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCcccCcc
Confidence 46899999999999999999999999988888754321 01 23345432 1
Q ss_pred CHHHHhcccCEEEEcCCCC
Q psy3240 89 NIDDLCKQSDFIIITSALT 107 (274)
Q Consensus 89 sl~ell~~aDvVil~lPlt 107 (274)
+++++....|.|++++-..
T Consensus 271 ~~~~~~~~~DaVilAtGa~ 289 (652)
T PRK12814 271 TLEELQKEFDAVLLAVGAQ 289 (652)
T ss_pred CHHHHHhhcCEEEEEcCCC
Confidence 3555556799999988654
No 500
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=91.44 E-value=0.5 Score=45.77 Aligned_cols=84 Identities=19% Similarity=0.303 Sum_probs=47.7
Q ss_pred CEEEEEcc-ChHHHHHHH-HHccCCCe---EEEEeCCCCChhHhhc-CC--cccC-H-HHHhcccCEEEEcCCCCcccHH
Q psy3240 43 STVGIVGC-GRIGLSVLE-KLIPYKVS---KFLYTSRSKKPEADKR-GA--EHTN-I-DDLCKQSDFIIITSALTPDTHH 112 (274)
Q Consensus 43 ktVGIIGl-G~IG~~iA~-~L~~~G~~---vv~~~~r~~~~~a~~~-g~--~~~s-l-~ell~~aDvVil~lPlt~~T~~ 112 (274)
.+|||||. |..|+.+.+ .|..-.+. ...+.+.........+ |. ...+ . .+.++++|++++++|.. .++.
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~~~f~g~~~~v~~~~~~~~~~~~Divf~a~~~~-~s~~ 80 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSFGGKEGTLQDAFDIDALKKLDIIITCQGGD-YTNE 80 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCcccccCCCcceEEecCChhHhcCCCEEEECCCHH-HHHH
Confidence 47999996 999999998 66544443 3333332111111111 11 1112 1 24558899999999853 2322
Q ss_pred hccHHHHhcC-CCC--cEEEEcC
Q psy3240 113 LINRARLESM-KPG--AILINTS 132 (274)
Q Consensus 113 li~~~~l~~m-k~g--ailINv~ 132 (274)
+ .+.+ +.| +++||.|
T Consensus 81 ~-----~~~~~~aG~~~~VID~S 98 (369)
T PRK06598 81 V-----YPKLRAAGWQGYWIDAA 98 (369)
T ss_pred H-----HHHHHhCCCCeEEEECC
Confidence 2 2222 467 7799988
Done!