RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3240
(274 letters)
>2nac_A NAD-dependent formate dehydrogenase;
oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas
SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A*
2gsd_A* 3fn4_A
Length = 393
Score = 194 bits (494), Expect = 7e-60
Identities = 58/247 (23%), Positives = 90/247 (36%), Gaps = 63/247 (25%)
Query: 24 RGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--AD 81
+G W A L+ VG V GRIGL+VL +L P+ V YT R + PE
Sbjct: 174 KGGWN-IADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDV-HLHYTDRHRLPESVEK 231
Query: 82 KRGAE-HTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQE 140
+ H +D+ D + + L P+T H+IN L+ K GA ++NT+RG+L D++
Sbjct: 232 ELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRD 291
Query: 141 ALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSA 200
A+ + G +
Sbjct: 292 AVARALES---------------------------GRL---------------------- 302
Query: 201 SDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNII 260
G DV +P+P P D P + + PHI + + A T + +
Sbjct: 303 ---------AGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTLTAQARYAAGTREILE 353
Query: 261 NTFHNKP 267
F +P
Sbjct: 354 CFFEGRP 360
>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid
dehydrogenase, oxidoreductase; HET: NAD; 1.70A
{Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A*
4e5m_A*
Length = 330
Score = 189 bits (483), Expect = 5e-59
Identities = 63/250 (25%), Positives = 102/250 (40%), Gaps = 53/250 (21%)
Query: 24 RGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKR 83
G+++ W P F G L N+TVG +G G IGL++ ++L + + + +++ + ++R
Sbjct: 128 SGKFRGWQPRFY-GTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQR 186
Query: 84 -GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEAL 142
G +L SDFI++ L DT HL+N L ++PGA+L+N RG +VD+ A+
Sbjct: 187 LGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAV 246
Query: 143 IDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASD 202
+ + G + A+D
Sbjct: 247 LAALER---------------------------GQLGG------------------YAAD 261
Query: 203 VLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIINT 262
V + + A L L N + PHIGSA R E+ R AQNI+
Sbjct: 262 VFEMEDWARADRPQQIDPAL------LAHPNTLFTPHIGSAVRAVRLEIERCAAQNILQA 315
Query: 263 FHNKPMIYEV 272
+ I V
Sbjct: 316 LAGERPINAV 325
>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project
protein structural and functional analyses; 1.95A
{Pyrococcus horikoshii}
Length = 333
Score = 179 bits (456), Expect = 7e-55
Identities = 61/253 (24%), Positives = 100/253 (39%), Gaps = 64/253 (25%)
Query: 24 RGEWKSWAP---NFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEA 80
RGEW+S A F +L VGI+G G IG ++ +LIP+ V K Y SR +K
Sbjct: 125 RGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIARRLIPFGV-KLYYWSRHRKVNV 183
Query: 81 DKR-GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQ 139
+K A + +ID+L ++SD +I+ LT DT+H+IN R++ ++ G L+N RG LVD+
Sbjct: 184 EKELKARYMDIDELLEKSDIVILALPLTRDTYHIINEERVKKLE-GKYLVNIGRGALVDE 242
Query: 140 EALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFS 199
+A+ + I G +
Sbjct: 243 KAVTEAIKQ---------------------------GKLKG------------------- 256
Query: 200 ASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNI 259
DV EP+ V+ PH +E ++++ +N+
Sbjct: 257 ------------YATDVFEKEPVREHELFKYEWETVLTPHYAGLALEAQEDVGFRAVENL 304
Query: 260 INTFHNKPMIYEV 272
+ + V
Sbjct: 305 LKVLRGEVPEDLV 317
>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum
aerophilum} SCOP: c.2.1.4 c.23.12.1
Length = 303
Score = 177 bits (450), Expect = 2e-54
Identities = 37/251 (14%), Positives = 71/251 (28%), Gaps = 67/251 (26%)
Query: 24 RGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKR 83
RG++ P +Q V ++G G IG V + L + SR+ K
Sbjct: 110 RGDYGRDVE----IPLIQGEKVAVLGLGEIGTRVGKILAALGA-QVRGFSRTPKEGP--- 161
Query: 84 GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALI 143
++++ +++ + L T L+ L M A+ +N R +++D++ ++
Sbjct: 162 WRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVL 221
Query: 144 DFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDV 203
+ + F ASDV
Sbjct: 222 RILKE---------------------------RPQFIF------------------ASDV 236
Query: 204 LKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETR--QEMARITAQNIIN 261
D+ L N V P + R ++M +N+I
Sbjct: 237 WWG------------RNDFAKDAEFFSLPNVVATPWVAGGYGNERVWRQMVMEAVRNLIT 284
Query: 262 TFHNKPMIYEV 272
Sbjct: 285 YATGGRPRNIA 295
>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann
fold, formate/glycerate dehydrogenase substr binding
domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens}
PDB: 2wwr_A 2h1s_A 2q50_A
Length = 330
Score = 175 bits (447), Expect = 1e-53
Identities = 53/122 (43%), Positives = 73/122 (59%), Gaps = 1/122 (0%)
Query: 24 RGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKR 83
G W SW P ++CG L STVGI+G GRIG ++ +L P+ V +FLYT R +PE
Sbjct: 137 NGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAE 196
Query: 84 -GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEAL 142
AE + +L QSDFI++ +LTP T L N+ + MK A+ IN SRG +V+Q+ L
Sbjct: 197 FQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDL 256
Query: 143 ID 144
Sbjct: 257 YQ 258
Score = 118 bits (298), Expect = 1e-31
Identities = 37/73 (50%), Positives = 45/73 (61%)
Query: 202 DVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIIN 261
L + KI AGLDV PEPLP + PLL L NCVILPHIGSA TR M+ + A N++
Sbjct: 258 QALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRNTMSLLAANNLLA 317
Query: 262 TFHNKPMIYEVPL 274
+PM E+ L
Sbjct: 318 GLRGEPMPSELKL 330
>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD,
oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana}
PDB: 3n7u_A* 3naq_A
Length = 351
Score = 174 bits (443), Expect = 9e-53
Identities = 51/247 (20%), Positives = 93/247 (37%), Gaps = 63/247 (25%)
Query: 24 RGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--AD 81
+GEW + L+ T+G VG GRIG +L++L P+ LY R +
Sbjct: 147 KGEWNVAGIAYR-AYDLEGKTIGTVGAGRIGKLLLQRLKPFGC-NLLYHDRLQMAPELEK 204
Query: 82 KRGAE-HTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQE 140
+ GA+ +++++ + D I+I LT T + N+ + +K G +++N +RG +++++
Sbjct: 205 ETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQ 264
Query: 141 ALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSA 200
A++D + GH+
Sbjct: 265 AVVDAVES---------------------------GHI---------------------- 275
Query: 201 SDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNII 260
G DV P+P P D P + N + PH I+ + A T +
Sbjct: 276 ---------GGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTTIDAQLRYAAGTKDMLE 326
Query: 261 NTFHNKP 267
F +
Sbjct: 327 RYFKGED 333
>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics,
riken structur genomics/proteomics initiative, RSGI,
NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}
Length = 311
Score = 164 bits (417), Expect = 3e-49
Identities = 50/121 (41%), Positives = 80/121 (66%), Gaps = 5/121 (4%)
Query: 24 RGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKR 83
G WK+W P + G LQ T+G+VG GRIG +V ++ + + + + +Y +R+ KP
Sbjct: 126 DGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRALAFGM-RVVYHARTPKPL---- 180
Query: 84 GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALI 143
++++L K++D + + + LTP+TH L+NR RL +MK GAIL+NT+RG LVD EAL+
Sbjct: 181 PYPFLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALV 240
Query: 144 D 144
+
Sbjct: 241 E 241
Score = 109 bits (276), Expect = 1e-28
Identities = 29/66 (43%), Positives = 36/66 (54%)
Query: 207 KKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIINTFHNK 266
+ GAGLDV PEPLP PL L N VI PHIGSA TR+ MA + +N++ +
Sbjct: 245 GHLFGAGLDVTDPEPLPPGHPLYALPNAVITPHIGSAGRTTRERMAEVAVENLLAVLEGR 304
Query: 267 PMIYEV 272
V
Sbjct: 305 EPPNPV 310
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural
genomics, protein structure initiative, nysgrc, P
biology; 1.70A {Polaromonas SP}
Length = 345
Score = 164 bits (417), Expect = 5e-49
Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 2/122 (1%)
Query: 24 RGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKR 83
G W W P + G L +GI G GRIG ++ + + + Y +R++ A +
Sbjct: 155 SGSWPGWGPTQLLGMGLTGRRLGIFGMGRIGRAIATRARGFGL-AIHYHNRTRLSHALEE 213
Query: 84 -GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEAL 142
H +D L SD +I + P+ ++ R+ + GA++IN SRG L++ +AL
Sbjct: 214 GAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLINDDAL 273
Query: 143 ID 144
I+
Sbjct: 274 IE 275
Score = 102 bits (256), Expect = 2e-25
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 202 DVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIIN 261
+ L++K + AGLDV EP +D LDN + PHIGSA ETR M + Q I
Sbjct: 275 EALRSKHLFAAGLDVFANEP-AIDPRYRSLDNIFLTPHIGSATHETRDAMGWLLIQGIEA 333
Query: 262 TFHNKPMIYEV 272
+ +
Sbjct: 334 LNQSDVPDNLI 344
>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein,
phosphorylation, transcriptional corepresso
transcription repressor; HET: NAD; 1.95A {Homo sapiens}
SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A*
3ga0_A 2ome_A*
Length = 347
Score = 163 bits (416), Expect = 8e-49
Identities = 52/251 (20%), Positives = 82/251 (32%), Gaps = 66/251 (26%)
Query: 24 RGEWK----SWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE 79
G ++ T+GI+G GR+G +V + + L+
Sbjct: 146 EGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGF-NVLFYDPYLSDG 204
Query: 80 ADKR-GAEH-TNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLV 137
++ G + + + DL SD + + L HHLIN ++ M+ GA L+NT+RG LV
Sbjct: 205 VERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLV 264
Query: 138 DQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFI 197
D++AL + + G +
Sbjct: 265 DEKALAQALKE---------------------------GRI------------------- 278
Query: 198 FSASDVLKAKKIRGAGLDVMYPEPLPL-DSPLLQLDNCVILPHIGSAQIETRQEMARITA 256
RGA LDV EP PL N + PH + EM A
Sbjct: 279 ------------RGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQASIEMREEAA 326
Query: 257 QNIINTFHNKP 267
+ I +
Sbjct: 327 REIRRAITGRI 337
>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid
dehydrogenase, cofactor regenerator, yeast, CBFDH; HET:
PG4; 1.55A {Candida boidinii} PDB: 2fss_A
Length = 364
Score = 162 bits (412), Expect = 4e-48
Identities = 57/257 (22%), Positives = 92/257 (35%), Gaps = 67/257 (26%)
Query: 24 RGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--AD 81
+W+ A ++ T+ +G GRIG VLE+L+P+ + LY P+ +
Sbjct: 147 NHDWE-VAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEE 205
Query: 82 KRGAE-HTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQE 140
K GA NI++L Q+D + + + L T LIN+ L K GA L+NT+RG + E
Sbjct: 206 KVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAE 265
Query: 141 ALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSA 200
+ + G +
Sbjct: 266 DVAAALES---------------------------GQL---------------------- 276
Query: 201 SDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDN-----CVILPHIGSAQIETRQEMARIT 255
RG G DV +P+P P D P + N + PH ++ + A+ T
Sbjct: 277 ---------RGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAMTPHYSGTTLDAQTRYAQGT 327
Query: 256 AQNIINTFHNKPMIYEV 272
+ + F K
Sbjct: 328 VNILESFFTGKFDYRPQ 344
>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST
genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus
horikoshii} PDB: 2dbr_A* 2dbz_A*
Length = 334
Score = 161 bits (410), Expect = 4e-48
Identities = 50/126 (39%), Positives = 80/126 (63%), Gaps = 6/126 (4%)
Query: 24 RGEWK----SWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE 79
GEWK +W P + G + T+GI+G GRIG ++ ++ + + + LY SR++K E
Sbjct: 128 SGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNM-RILYYSRTRKEE 186
Query: 80 ADKR-GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVD 138
++ AE ++DL ++SDF+++ LT +T+HLIN RL+ MK AILIN +RG++VD
Sbjct: 187 VERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIARGKVVD 246
Query: 139 QEALID 144
AL+
Sbjct: 247 TNALVK 252
Score = 107 bits (269), Expect = 2e-27
Identities = 29/71 (40%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 202 DVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIIN 261
LK I GAGLDV EP + L +LDN V+ PHIGSA R+ MA + A+N+I
Sbjct: 252 KALKEGWIAGAGLDVFEEEPYY-NEELFKLDNVVLTPHIGSASFGAREGMAELVAKNLIA 310
Query: 262 TFHNKPMIYEV 272
+ V
Sbjct: 311 FKRGEIPPTLV 321
>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A));
2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4
c.23.12.1
Length = 320
Score = 158 bits (401), Expect = 8e-47
Identities = 38/124 (30%), Positives = 63/124 (50%), Gaps = 4/124 (3%)
Query: 24 RGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKP---EA 80
W W P + G L N T+GI G G IG ++ ++ + + Y + EA
Sbjct: 128 TRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDM-DIDYFDTHRASSSDEA 186
Query: 81 DKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQE 140
+ H ++D L S F + + TP+T + N+A ++S+ GAI++NT+RG LVD E
Sbjct: 187 SYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNE 246
Query: 141 ALID 144
++
Sbjct: 247 LVVA 250
Score = 108 bits (271), Expect = 8e-28
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 202 DVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIIN 261
L+A ++ AG DV EP ++ L N + PHIGSA + R++MA I
Sbjct: 250 AALEAGRLAYAGFDVFAGEP-NINEGYYDLPNTFLFPHIGSAATQAREDMAHQANDLIDA 308
Query: 262 TFHNKPMIYEV 272
F M Y +
Sbjct: 309 LFGGADMSYAL 319
>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J,
structural genomics, protein structure initiative; 2.20A
{Thermoplasma acidophilum}
Length = 290
Score = 152 bits (386), Expect = 5e-45
Identities = 40/244 (16%), Positives = 77/244 (31%), Gaps = 70/244 (28%)
Query: 25 GEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRG 84
G ++ L +GI+G G IG V + + + + +RS +
Sbjct: 110 GIFRQSP-----TTLLYGKALGILGYGGIGRRVAHLAKAFGM-RVIAYTRSSVDQ--NVD 161
Query: 85 AEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALID 144
+ DL +QSDF++I LT T ++N L + + ++N +R +V + +I
Sbjct: 162 VISESPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVSKPDMIG 221
Query: 145 FIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVL 204
F+ +
Sbjct: 222 FLKE---------------------------RSDVW------------------------ 230
Query: 205 KAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIG-SAQIETRQEMARITAQNIINTF 263
DV + EP ++ L N ++ PH+ E ++ +N+ N F
Sbjct: 231 -------YLSDVWWNEPEITETN---LRNAILSPHVAGGMSGEIMDIAIQLAFENVRNFF 280
Query: 264 HNKP 267
+
Sbjct: 281 EGEG 284
>1wwk_A Phosphoglycerate dehydrogenase; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus
horikoshii}
Length = 307
Score = 152 bits (386), Expect = 1e-44
Identities = 66/235 (28%), Positives = 96/235 (40%), Gaps = 60/235 (25%)
Query: 30 WAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE-ADKRGAEHT 88
WA G L+ T+GI+G GRIG V + + L E A + +
Sbjct: 130 WAKKEAMGIELEGKTIGIIGFGRIGYQVAKIANALGM-NILLYDPYPNEERAKEVNGKFV 188
Query: 89 NIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIAD 148
+++ L K+SD + I L T+HLIN RL+ MK AILINTSRG +VD AL+ + +
Sbjct: 189 DLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTNALVKALKE 248
Query: 149 IRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKK 208
G ++
Sbjct: 249 ---------------------------GWIAG---------------------------- 253
Query: 209 IRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIINTF 263
AGLDV EPLP D PL + DN V+ PHIG++ +E ++ A+ ++
Sbjct: 254 ---AGLDVFEEEPLPKDHPLTKFDNVVLTPHIGASTVEAQERAGVEVAEKVVKIL 305
>2pi1_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, 3D-structure,
structural genomics, NPPSFA; HET: MSE NAD; 2.12A
{Aquifex aeolicus VF5} PDB: 3kb6_A*
Length = 334
Score = 141 bits (357), Expect = 3e-40
Identities = 58/252 (23%), Positives = 91/252 (36%), Gaps = 62/252 (24%)
Query: 24 RGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPY--KVSKFLYTSRSKKPEAD 81
+ + S + L T+G++G GRIG V + + KV L K+ +
Sbjct: 125 KLNF-SQDSEIL-ARELNRLTLGVIGTGRIGSRVAMYGLAFGMKV---LCYDVVKREDLK 179
Query: 82 KRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEA 141
++G +T++D+L K+SD I + T +THH+IN R+ MK G LINT+RG++VD +A
Sbjct: 180 EKGCVYTSLDELLKESDVISLHVPYTKETHHMINEERISLMKDGVYLINTARGKVVDTDA 239
Query: 142 LIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSAS 201
L G S
Sbjct: 240 LYRAYQR---------------------------GKFSGL------------------GL 254
Query: 202 DV------LKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARIT 255
DV L KK + L L DN +I PHI ++ + + T
Sbjct: 255 DVFEDEEILILKKYTEGKATDKNLKILEL----ACKDNVIITPHIAYYTDKSLERIREET 310
Query: 256 AQNIINTFHNKP 267
+ +
Sbjct: 311 VKVVKAFVKGDL 322
>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc,
oxidoreductase; 2.50A {Sinorhizobium meliloti}
Length = 340
Score = 139 bits (353), Expect = 1e-39
Identities = 30/121 (24%), Positives = 63/121 (52%), Gaps = 4/121 (3%)
Query: 24 RGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKR 83
G W + G + + +G++G G+IG ++ + + + Y +RS D
Sbjct: 154 EGRWAAGEQ-LPLGHSPKGKRIGVLGLGQIGRALASRAEAFGM-SVRYWNRSTLSGVD-- 209
Query: 84 GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALI 143
H + DL + SD + + A + T ++++ + L+++ P I++N +RG +VD++ALI
Sbjct: 210 WIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDEDALI 269
Query: 144 D 144
+
Sbjct: 270 E 270
Score = 89.6 bits (223), Expect = 5e-21
Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 204 LKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIINTF 263
LK+ I GAGLDV EP S N V++PH GSA +ETR M ++ N+ F
Sbjct: 272 LKSGTIAGAGLDVFVNEPAI-RSEFHTTPNTVLMPHQGSATVETRMAMGKLVLANLAAHF 330
Query: 264 HNKPMIYEV 272
+ V
Sbjct: 331 AGEKAPNTV 339
>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein,
substrate binding domain, cofactor bindi domain,
oxidoreductase; 1.47A {Solenostemon scutellarioides}
PDB: 3baz_A*
Length = 333
Score = 138 bits (351), Expect = 2e-39
Identities = 43/121 (35%), Positives = 64/121 (52%), Gaps = 5/121 (4%)
Query: 24 RGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKR 83
RG WK F VGI+G GRIGL+V E+ + Y SRSKKP +
Sbjct: 148 RGAWKFGD--FKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDC-PISYFSRSKKPNTNYT 204
Query: 84 GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALI 143
+ ++ +L SD +++ LTP+T H+INR ++++ P +LIN RG VD+ L+
Sbjct: 205 --YYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELV 262
Query: 144 D 144
Sbjct: 263 S 263
Score = 91.5 bits (228), Expect = 1e-21
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 204 LKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIINTF 263
L ++ GAGLDV EP L L+N V+LPH+GS +ETR+ MA + N+ F
Sbjct: 265 LVEGRLGGAGLDVFEREPEV-PEKLFGLENVVLLPHVGSGTVETRKVMADLVVGNLEAHF 323
Query: 264 HNKPMIYEV 272
KP++ V
Sbjct: 324 SGKPLLTPV 332
>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase,
reversible interconversion of pyruvate INTO D-lactate;
1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4
c.23.12.1 PDB: 1j49_A* 2dld_A*
Length = 333
Score = 138 bits (349), Expect = 5e-39
Identities = 51/249 (20%), Positives = 88/249 (35%), Gaps = 49/249 (19%)
Query: 24 RGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKR 83
R + WAP + G +++ VG+VG G IG ++ + + +K + + PE +K+
Sbjct: 131 RHDL-RWAP-TI-GREVRDQVVGVVGTGHIGQVFMQIMEGFG-AKVITYDIFRNPELEKK 186
Query: 84 GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALI 143
G ++DDL KQ+D I + P H+IN + MK +++N SRG LVD +A+I
Sbjct: 187 GYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVI 246
Query: 144 DFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDV 203
+ G + + A DV
Sbjct: 247 RGLDS---------------------------GKIFGY------------------AMDV 261
Query: 204 LKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIINTF 263
+ + P + L+ N ++ P + M N +
Sbjct: 262 YEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPKTAFYTTHAVRNMVVKAFDNNLELV 321
Query: 264 HNKPMIYEV 272
K V
Sbjct: 322 EGKEAETPV 330
>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase,
oxidoreductase; 1.85A {Rhodotorula graminis} PDB:
2w2l_A* 2w2l_D* 2w2k_B
Length = 348
Score = 137 bits (346), Expect = 2e-38
Identities = 33/131 (25%), Positives = 63/131 (48%), Gaps = 13/131 (9%)
Query: 24 RGEWKSWAPNFMCGPAL----QNSTVGIVGCGRIGLSVLEKLIP---YKVSKFLYTSRSK 76
G+ +++ + + +G VG G I + K + K+ +Y +
Sbjct: 141 TGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKL---VYYDVAP 197
Query: 77 KPEA--DKRGAE-HTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSR 133
GAE ++++L ++SD + ++ THHLI+ A +MKPG+ ++NT+R
Sbjct: 198 ADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTAR 257
Query: 134 GQLVDQEALID 144
G ++ Q+ALI
Sbjct: 258 GPVISQDALIA 268
Score = 89.3 bits (222), Expect = 1e-20
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 202 DVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIIN 261
LK+ K+ AGLDV EP + L+++ + + HIG IET E R+T NI
Sbjct: 268 AALKSGKLLSAGLDVHEFEP-QVSKELIEMKHVTLTTHIGGVAIETFHEFERLTMTNIDR 326
Query: 262 TFHN-KPMIYEVP 273
KP++
Sbjct: 327 FLLQGKPLLTPAG 339
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}
Length = 313
Score = 133 bits (337), Expect = 2e-37
Identities = 57/247 (23%), Positives = 93/247 (37%), Gaps = 65/247 (26%)
Query: 25 GEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRG 84
G +K G L T+GIVG GRIG V + Y + +A+K
Sbjct: 130 GIFKKIE-----GLELAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIREKAEKIN 184
Query: 85 AEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALID 144
A+ ++++L K SD I + ++ D +I+ + E MK I++NTSR V+ +AL+D
Sbjct: 185 AKAVSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLD 244
Query: 145 FIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVL 204
+I G V
Sbjct: 245 YIKK---------------------------GKVY------------------------- 252
Query: 205 KAKKIRGAGLDVMYPEPLP--LDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIINT 262
DV + EP + LL+ + ++ HIG+ E ++ +A +T QN++N
Sbjct: 253 ------AYATDVFWNEPPKEEWELELLKHERVIVTTHIGAQTKEAQKRVAEMTTQNLLNA 306
Query: 263 FHNKPMI 269
MI
Sbjct: 307 MKELGMI 313
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase,
phosphoglycerate dehydrogenase deficiency, S metabolism,
2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo
sapiens}
Length = 335
Score = 132 bits (335), Expect = 6e-37
Identities = 52/243 (21%), Positives = 86/243 (35%), Gaps = 62/243 (25%)
Query: 25 GEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRG 84
G+W+ FM G L T+GI+G GRIG V ++ + + Y + G
Sbjct: 151 GKWER--KKFM-GTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISPEVSASFG 207
Query: 85 AEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALID 144
+ ++++ DFI + + L P T L+N K G ++N +RG +VD+ AL+
Sbjct: 208 VQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLR 267
Query: 145 FIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVL 204
+ G +
Sbjct: 268 ALQS---------------------------GQCA------------------------- 275
Query: 205 KAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIINTFH 264
GA LDV EP P D L+ +N + PH+G++ E + A ++
Sbjct: 276 ------GAALDVFTEEP-PRDRALVDHENVISCPHLGASTKEAQSRCGEEIAVQFVDMVK 328
Query: 265 NKP 267
K
Sbjct: 329 GKS 331
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine
biosy structural genomics, PSI, protein structure
initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis}
SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A*
3ddn_A*
Length = 529
Score = 133 bits (338), Expect = 3e-36
Identities = 67/248 (27%), Positives = 98/248 (39%), Gaps = 62/248 (25%)
Query: 25 GEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRG 84
WK +F G + TVG+VG GRIG V +++ + Y A + G
Sbjct: 128 HTWKR--SSFS-GTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQLG 184
Query: 85 AEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALID 144
E ++DDL ++DFI + TP+T LI++ L KPG I++N +RG LVD+ AL D
Sbjct: 185 IELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALAD 244
Query: 145 FIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVL 204
I GHV
Sbjct: 245 AITG---------------------------GHV-------------------------- 251
Query: 205 KAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIINTFH 264
R AGLDV EP DSPL +L V+ PH+G++ E + A+++
Sbjct: 252 -----RAAGLDVFATEP-CTDSPLFELAQVVVTPHLGASTAEAQDRAGTDVAESVRLALA 305
Query: 265 NKPMIYEV 272
+ + V
Sbjct: 306 GEFVPDAV 313
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate
dehydrogenase, D-lactate dehydrogenas oxidoreductase;
HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4
c.23.12.1
Length = 333
Score = 130 bits (329), Expect = 4e-36
Identities = 56/260 (21%), Positives = 89/260 (34%), Gaps = 71/260 (27%)
Query: 24 RGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLE-------KLIPYKVSKFLYTSRSK 76
G++ A F+ G L TVG++G G IG ++ K+I Y
Sbjct: 129 AGDY-EKAGTFI-GKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDP---------Y 177
Query: 77 KPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQL 136
+ D ++ +++DL KQSD I + H+IN A MKPGAI+INT+R L
Sbjct: 178 PMKGDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNL 237
Query: 137 VDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTV---- 192
+D +A++ + G ++ DT
Sbjct: 238 IDTQAMLSNLKS---------------------------GKLAGVGI------DTYEYET 264
Query: 193 GIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMA 252
+ PL LL + N V+ PHI M
Sbjct: 265 EDLLNLAKHGSF----------------KDPLWDELLGMPNVVLSPHIAYYTETAVHNMV 308
Query: 253 RITAQNIINTFHNKPMIYEV 272
+ Q++++ EV
Sbjct: 309 YFSLQHLVDFLTKGETSTEV 328
>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein
structure initiative; 2.20A {Lactobacillus plantarum}
Length = 324
Score = 125 bits (316), Expect = 3e-34
Identities = 32/120 (26%), Positives = 47/120 (39%), Gaps = 3/120 (2%)
Query: 26 EWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEAD-KRG 84
+ WA L + I G G+IG S+ K + + + + P
Sbjct: 122 GARQWALPMT-TSTLTGQQLLIYGTGQIGQSLAAKASALGM-HVIGVNTTGHPADHFHET 179
Query: 85 AEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALID 144
T D ++FI+ LTP THHL + + K +LIN RG VD AL+
Sbjct: 180 VAFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMT 239
Score = 88.5 bits (220), Expect = 1e-20
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 202 DVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIIN 261
L ++ A LDV PEPLP D PL Q D+ +I PHI R + I A N
Sbjct: 239 TALDHHQLSMAALDVTEPEPLPTDHPLWQRDDVLITPHISGQIAHFRATVFPIFAANFAQ 298
Query: 262 TFHN-KPMIYEV 272
+ + +V
Sbjct: 299 FVKDGTLVRNQV 310
>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural
variant of the BAB rossmann fold, oxidoreductase; 1.98A
{Acidaminococcus fermentans}
Length = 331
Score = 124 bits (313), Expect = 7e-34
Identities = 55/261 (21%), Positives = 97/261 (37%), Gaps = 72/261 (27%)
Query: 24 RGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLE-------KLIPYKVSKFLYTSRSK 76
+ + FM ++N TVG+VG GRIG + +I V
Sbjct: 130 KKNF-KVDA-FMFSKEVRNCTVGVVGLGRIGRVAAQIFHGMGATVIGEDV---------F 178
Query: 77 KPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQL 136
+ + + ++D++ ++SD I I + + ++ R L+ MK GAIL+N +RGQL
Sbjct: 179 EIKGIEDYCTQVSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQL 238
Query: 137 VDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYF 196
VD EA+I+ + G + +
Sbjct: 239 VDTEAVIEAVES---------------------------GKLGGY--------------- 256
Query: 197 IFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQ-----LDNCVILPHIGSAQIETRQEM 251
DVL + A + E L++PL + +I PH+GS E + M
Sbjct: 257 ---GCDVLDGE----ASVFGKDLEGQKLENPLFEKLVDLYPRVLITPHLGSYTDEAVKNM 309
Query: 252 ARITAQNIINTFHNKPMIYEV 272
++ QN+ + ++
Sbjct: 310 VEVSYQNLKDLAETGDCPNKI 330
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation
phosphoglycerate dehydrogenase PGDH, oxidoreductase;
HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4
c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A*
2pa3_A* 2p9g_A*
Length = 404
Score = 115 bits (289), Expect = 6e-30
Identities = 57/261 (21%), Positives = 88/261 (33%), Gaps = 83/261 (31%)
Query: 24 RGEW-KSWAPNFMCGPALQNSTVGIVGCGRIG--LSVLE-----KLIPYKVSKFLYTSRS 75
RG K + +GI+G G IG L +L + Y + L
Sbjct: 130 RGVGNKL---AAG-SFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKL----- 180
Query: 76 KKPEADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQ 135
+ ++ DL SD + + P T +++ + MKPG++LIN SRG
Sbjct: 181 ----PLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGT 236
Query: 136 LVDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIY 195
+VD AL D +A H++
Sbjct: 237 VVDIPALADALAS---------------------------KHLA---------------- 253
Query: 196 FIFSASDVLKAKKIRGAGLDVMYPEPL----PLDSPLLQLDNCVILPHIGSAQIETRQEM 251
GA +DV EP P SPL + DN ++ PHIG + E ++ +
Sbjct: 254 ---------------GAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQENI 298
Query: 252 ARITAQNIINTFHNKPMIYEV 272
A +I N + V
Sbjct: 299 GLEVAGKLIKYSDNGSTLSAV 319
>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD,
tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A
{Pseudomonas aeruginosa}
Length = 380
Score = 111 bits (280), Expect = 9e-29
Identities = 47/237 (19%), Positives = 74/237 (31%), Gaps = 71/237 (29%)
Query: 37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKP--EADKRGAEHTNIDDLC 94
G L T G+VG G++G ++E L + P +A + E +++ L
Sbjct: 111 GADLAERTYGVVGAGQVGGRLVEVLRGLGWKVLVCD-----PPRQAREPDGEFVSLERLL 165
Query: 95 KQSDFIIITSALTPD----THHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIR 150
++D I + + L D T HL++ RL +++PG L+N SRG +VD +AL +
Sbjct: 166 AEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLL---- 221
Query: 151 VISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIR 210
G
Sbjct: 222 -----------------------EGGADL------------------------------- 227
Query: 211 GAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIINTFHNKP 267
LDV EP P L + PHI +E + Q
Sbjct: 228 EVALDVWEGEPQA--DPELAARCLIATPHIAGYSLEGKLRGTAQIYQAYCAWRGIAE 282
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle
structural genomics center for infect disease,
brucellosis; 2.15A {Brucella melitensis biovar abortus}
Length = 416
Score = 110 bits (277), Expect = 4e-28
Identities = 55/262 (20%), Positives = 88/262 (33%), Gaps = 85/262 (32%)
Query: 24 RGEW-KSWAPNFMCGPALQNSTVGIVGCGRIG--LSVLE-----KLIPYKVSKFLYTSRS 75
G W K+ ++ T+GIVG G IG + L + Y
Sbjct: 141 AGGWEKT---AIG-SREVRGKTLGIVGYGNIGSQVGNLAESLGMTVRYYDT--------- 187
Query: 76 KKPEADKRGAEH-TNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRG 134
+ + ++D+L K SD + + + T LI A+L MK GA LIN +RG
Sbjct: 188 -SDKLQYGNVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARG 246
Query: 135 QLVDQEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGI 194
VD EAL + + GH++
Sbjct: 247 SDVDLEALAKVLQE---------------------------GHLA--------------- 264
Query: 195 YFIFSASDVLKAKKIRGAGLDVMYPEPL----PLDSPLLQLDNCVILPHIGSAQIETRQE 250
GA +DV EP +PL L+N ++ PHIG + E ++
Sbjct: 265 ----------------GAAIDVFPVEPASNGERFSTPLQGLENVILTPHIGGSTEEAQER 308
Query: 251 MARITAQNIINTFHNKPMIYEV 272
+ + ++ + V
Sbjct: 309 IGTEVTRKLVEYSDVGSTVGAV 330
>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural
genomics, PSI-2, P structure initiative; 1.90A
{Ralstonia solanacearum}
Length = 352
Score = 108 bits (272), Expect = 1e-27
Identities = 38/129 (29%), Positives = 62/129 (48%), Gaps = 8/129 (6%)
Query: 24 RGEWK-------SWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSK 76
G W+ + PNF G L+ T+GI G G+IG V + ++ ++ +
Sbjct: 135 HGAWQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENS 194
Query: 77 KPEADKRGAEH-TNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQ 135
K A G + D L +QSD + + L +T +I A L MKP A+ +NTSR +
Sbjct: 195 KERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAE 254
Query: 136 LVDQEALID 144
LV++ ++
Sbjct: 255 LVEENGMVT 263
Score = 84.2 bits (209), Expect = 5e-19
Identities = 19/66 (28%), Positives = 31/66 (46%)
Query: 202 DVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIIN 261
L + A +DV EP+ LL+++NC+ PHIG + E+ + I QNI++
Sbjct: 263 TALNRGRPGMAAIDVFETEPILQGHTLLRMENCICTPHIGYVERESYEMYFGIAFQNILD 322
Query: 262 TFHNKP 267
Sbjct: 323 ILQGNV 328
>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center
for structural genomics of infec diseases, csgid; HET:
NAD; 2.36A {Salmonella enterica subsp}
Length = 381
Score = 106 bits (267), Expect = 7e-27
Identities = 47/237 (19%), Positives = 78/237 (32%), Gaps = 71/237 (29%)
Query: 37 GPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKP--EADKRGAEHTNIDDLC 94
G +L++ T+GIVG G +G + +L + L P A + +D+L
Sbjct: 114 GFSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLC-----DPPRAARGDEGDFRTLDELV 168
Query: 95 KQSDFIIITSALTPD----THHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIR 150
+++D + + L D T HL + + +KPGAILIN RG +VD AL+ +
Sbjct: 169 QEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDNAALLARLN--- 225
Query: 151 VISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIR 210
G +
Sbjct: 226 ------------------------AGQPLS------------------------------ 231
Query: 211 GAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIINTFHNKP 267
LDV EP L+ LL+ + + HI +E + + +
Sbjct: 232 -VVLDVWEGEP-DLNVALLEAVD-IGTSHIAGYTLEGKARGTTQVFEAYSAFIGREQ 285
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center
for structural genomics of infec diseases, csgid; 2.10A
{Salmonella enterica subsp} PDB: 3kbo_A
Length = 315
Score = 100 bits (252), Expect = 3e-25
Identities = 31/126 (24%), Positives = 51/126 (40%), Gaps = 15/126 (11%)
Query: 24 RGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIP--YKVSKFLYTSRSKKPEAD 81
+ WK + +VGI+G G +G V E L + + + SRS+K
Sbjct: 126 QALWKPLPE-----YTREEFSVGIMGAGVLGAKVAESLQAWGFPLRCW---SRSRKSWPG 177
Query: 82 KR---GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVD 138
G E + Q+ +I T T +IN L+ + GA ++N +RG V
Sbjct: 178 VESYVGREE--LRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQ 235
Query: 139 QEALID 144
+ L+
Sbjct: 236 EADLLA 241
Score = 65.4 bits (160), Expect = 1e-12
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 204 LKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIINTF 263
L + K++GA LDV EPLP +SPL + + PHI + + E ++ I
Sbjct: 243 LDSGKLKGAMLDVFSQEPLPQESPLWRHPRVAMTPHIAA--VTRPAEAIDYISRTITQLE 300
Query: 264 HNKPMIYEV 272
+P+ +V
Sbjct: 301 KGEPVTGQV 309
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein;
structural genomics; 1.80A {Aeromonas salmonicida subsp}
Length = 324
Score = 100 bits (252), Expect = 4e-25
Identities = 36/127 (28%), Positives = 55/127 (43%), Gaps = 17/127 (13%)
Query: 24 RGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIP--YKVSKFLYTSRSKKPEAD 81
+ W+S L+ T+ I+G G IG + KV SRS + A
Sbjct: 127 QRLWQSHPY-----QGLKGRTLLILGTGSIGQHIAHTGKHFGMKVL---GVSRSGRERA- 177
Query: 82 KRGAEHT----NIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLV 137
G + ++ + Q+D I+ T +THHL +R E KPGAIL N RG +
Sbjct: 178 --GFDQVYQLPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAI 235
Query: 138 DQEALID 144
++ L+
Sbjct: 236 NEGDLLT 242
Score = 68.9 bits (169), Expect = 9e-14
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 202 DVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSAQIETRQEMARITAQNIIN 261
L+ K+ A LDV EPLP DSPL N +I PH + ++A+I +N I
Sbjct: 242 TALRTGKLGMAVLDVFEQEPLPADSPLWGQPNLIITPHNSA--YSFPDDVAQIFVRNYIR 299
Query: 262 TFHNKPMIYEV 272
+P+ ++
Sbjct: 300 FIDGQPLDGKI 310
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 69.6 bits (170), Expect = 5e-14
Identities = 19/107 (17%), Positives = 34/107 (31%), Gaps = 10/107 (9%)
Query: 40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYT-SRSKKPEADKRGAEHTNIDDL---CK 95
+ + V ++G GR+G+SV K + + G E +I +
Sbjct: 153 IHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELR 212
Query: 96 QSDFIIITSALTPDTHHLINRARLESMKPGAILINT-SRGQLVDQEA 141
D I T ++ L M +I+ S+ D
Sbjct: 213 DVDVCINTI-----PALVVTANVLAEMPSHTFVIDLASKPGGTDFRY 254
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.4 bits (109), Expect = 6e-06
Identities = 41/291 (14%), Positives = 83/291 (28%), Gaps = 97/291 (33%)
Query: 46 GIVGCGRIGLSVL----------EKLIPYKVSKF-LYTSRSKKPEADKRGAEHTNIDDLC 94
G++G G+ + + + + +K+ F L PE + L
Sbjct: 157 GVLGSGK---TWVALDVCLSYKVQCKMDFKI--FWLNLKNCNSPETVLE-----MLQKLL 206
Query: 95 KQSDFIIITSALTPDTHHLIN-RARLESMK------------PGAILI--NTSRGQLVD- 138
Q I T + H N + R+ S++ +L+ N + +
Sbjct: 207 YQ-----IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261
Query: 139 ------------QEALIDFIADIRVISISMVTNEKHL--------------HRVFTLGDS 172
+ + DF++ IS+ + L R L
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321
Query: 173 FHKGH------VSAFIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDS 226
+ ++ I + D + D K I + L+V L+
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWD----NWKHVNCD--KLTTIIESSLNV-------LEP 368
Query: 227 PLLQ--LDNCVILPHIGSAQIETR------QEMARITAQNIINTFHNKPMI 269
+ D + P SA I T ++ + ++N H ++
Sbjct: 369 AEYRKMFDRLSVFPP--SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417
Score = 35.2 bits (80), Expect = 0.020
Identities = 39/254 (15%), Positives = 70/254 (27%), Gaps = 105/254 (41%)
Query: 90 IDDL-CKQ-SDFI--IITSALTPDTHHLIN-RARLESMKPGAILINTSRGQLVDQ---EA 141
+D+ CK D I++ + H+I + + + + + ++V + E
Sbjct: 30 VDNFDCKDVQDMPKSILSKE---EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEV 86
Query: 142 L---IDFIAD-IRVISI--SMVTN--EKHLHRVFTLGDSFHKGHVS-------------- 179
L F+ I+ SM+T + R++ F K +VS
Sbjct: 87 LRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE 146
Query: 180 ----AFIFIH-MI-MGDTV-----------------GIYFI-----FSASDVLK------ 205
+ I ++ G T I+++ S VL+
Sbjct: 147 LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206
Query: 206 --AKKIRGAGLDVMYPEPLPLDSP----------------LLQLDN-------------C 234
+ D L + S LL L N C
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC 266
Query: 235 VILPHIGSAQIETR 248
IL + TR
Sbjct: 267 KIL-------LTTR 273
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.1 bits (101), Expect = 8e-05
Identities = 48/268 (17%), Positives = 80/268 (29%), Gaps = 108/268 (40%)
Query: 56 SVLEKLIPYKVSKFL-YTSRSKKPEADKRGAE--HTNIDDLCKQSDFIIITSALTPDTHH 112
+ E L V KFL Y S +P + + + + + ++ ++ D H
Sbjct: 56 TPAE-L----VGKFLGYVSSLVEPSKVGQFDQVLNLCLTEF--ENCYL-----EGNDIHA 103
Query: 113 LINRARLESMKPGAILINTSRGQLVDQEALID--FIADIRVISISMVTNEKHLHRVFTLG 170
L A L+ + LV + LI A I
Sbjct: 104 LA-----------AKLLQENDTTLVKTKELIKNYITARI------------------MAK 134
Query: 171 DSFHKGHVSAFIF---------IHMIMGDTVG-------------IY---------FIFS 199
F K SA F + I G G +Y I
Sbjct: 135 RPFDKKSNSAL-FRAVGEGNAQLVAIFG---GQGNTDDYFEELRDLYQTYHVLVGDLIKF 190
Query: 200 ASDVL--------KAKKIRGAGLDVM----YPEPLP----LDS-----P---LLQLDN-C 234
+++ L A+K+ GL+++ P P L S P ++QL +
Sbjct: 191 SAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYV 250
Query: 235 VILPHIGSAQIETRQEMARIT--AQNII 260
V +G E R + T +Q ++
Sbjct: 251 VTAKLLGFTPGELRSYLKGATGHSQGLV 278
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Length = 286
Score = 40.0 bits (93), Expect = 4e-04
Identities = 16/94 (17%), Positives = 38/94 (40%), Gaps = 8/94 (8%)
Query: 40 LQNSTVGIVGC-GRIGLSVLEKLIP--YKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQ 96
+ TV I+G G++G + K+ + ++ + G T+ D +
Sbjct: 9 VGPKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRD-RLQGMGIPLTDGDGWIDE 67
Query: 97 SDFIIITSALTPDTHHL-INRARLESMKPGAILI 129
+D +++ PD + + ++PG I++
Sbjct: 68 ADVVVL---ALPDNIIEKVAEDIVPRVRPGTIVL 98
>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment,
heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP:
c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*
Length = 294
Score = 38.7 bits (90), Expect = 0.001
Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 2/78 (2%)
Query: 45 VGIVGCGRIGLSVLEKLIPYKVSKF--LYTSRSKKPEADKRGAEHTNIDDLCKQSDFIII 102
V +VG GR G L L + + F L S++ +++D + + +
Sbjct: 10 VVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELGSLDEVRQISLEDALRSQEIDVA 69
Query: 103 TSALTPDTHHLINRARLE 120
+H R L+
Sbjct: 70 YICSESSSHEDYIRQFLQ 87
>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein
structure initiative, joint center for structural G
oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima}
SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*
Length = 253
Score = 37.7 bits (87), Expect = 0.003
Identities = 18/103 (17%), Positives = 34/103 (33%), Gaps = 11/103 (10%)
Query: 45 VGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITS 104
V I+G G IG ++E K+ + S+ +D+ SD +
Sbjct: 15 VLIIGMGNIGKKLVELGNFEKIYAYDRISKDIPGVVR--------LDEFQVPSDVSTVVE 66
Query: 105 ALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIA 147
+P+ + L++ I S D+ F +
Sbjct: 67 CASPEAVKEYSLQILKN---PVNYIIISTSAFADEVFRERFFS 106
>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain,
rossmann fold, oxidoreductase; 1.90A {Escherichia coli}
PDB: 1x14_A* 1x15_A* 2bru_A*
Length = 401
Score = 37.3 bits (87), Expect = 0.004
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 80 ADKRGAEHTNIDDLCKQSDFIIITSALTPDTH--HLINRARLESMKPGAILI 129
AE K+ D II+T+AL P LI R ++SMK G++++
Sbjct: 239 DAFIKAEMELFAAQAKEVD-IIVTTALIPGKPAPKLITREMVDSMKAGSVIV 289
>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle
structural genomics center for infectious disease, S
tuberculosis; 1.82A {Mycobacterium smegmatis str}
Length = 381
Score = 37.2 bits (87), Expect = 0.004
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 80 ADKRGAEHTNIDDLCKQSDFIIITSALTP--DTHHLINRARLESMKPGAILI 129
+R + ++D + D I+IT+AL P L+ A M+PG++++
Sbjct: 249 EAERAQQQQALEDAITKFD-IVITTALVPGRPAPRLVTAAAATGMQPGSVVV 299
>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1;
transhydrogenase domain I, oxidoreductase; 1.81A
{Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB:
1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A*
2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*
Length = 384
Score = 36.9 bits (86), Expect = 0.006
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 80 ADKRGAEHTNIDDLCKQSDFIIITSALTPDTH--HLINRARLESMKPGAILI 129
+ R + + ++D I IT+AL P LI + MKPG+++I
Sbjct: 241 EEFRKKQAEAVLKELVKTD-IAITTALIPGKPAPVLITEEMVTKMKPGSVII 291
Score = 28.8 bits (65), Expect = 1.9
Identities = 9/74 (12%), Positives = 26/74 (35%), Gaps = 6/74 (8%)
Query: 84 GAE-HTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEAL 142
GA + Q+D + + + +K GA+L+ + +
Sbjct: 54 GATIASTAAQALSQADVVW---KVQRPMTAEEGTDEVALIKEGAVLM--CHLGALTNRPV 108
Query: 143 IDFIADIRVISISM 156
++ + ++ + +M
Sbjct: 109 VEALTKRKITAYAM 122
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343,
PSI-2, structure initiative; HET: MSE NAP; 2.79A
{Bacillus subtilis}
Length = 300
Score = 36.7 bits (85), Expect = 0.006
Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 11/95 (11%)
Query: 40 LQNSTVGIVGCGRIGLSVLEKLIPY--KVSKFLYTSRSKKPEADKRGAEH---TNIDDLC 94
+ S V ++G GR G+++ V K S + + G + +
Sbjct: 155 IHGSQVAVLGLGRTGMTIARTFAALGANV-KVGARSSAHLARITEMGLVPFHTDELKEHV 213
Query: 95 KQSDFIIITSALTPDTHHLINRARLESMKPGAILI 129
K D I T ++N+ L SM P +++
Sbjct: 214 KDIDICINTI-----PSMILNQTVLSSMTPKTLIL 243
>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.60A {Sinorhizobium meliloti}
Length = 405
Score = 36.1 bits (84), Expect = 0.010
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 80 ADKRGAEHTNIDDLCKQSDFIIITSALTPDTH--HLINRARLESMKPGAILI 129
+ + + + + + D I+IT+AL P L+ R L+SMKPG++++
Sbjct: 259 GEYQVKQAALVAEHIAKQD-IVITTALIPGRPAPRLVTREMLDSMKPGSVVV 309
Score = 27.7 bits (62), Expect = 4.8
Identities = 12/73 (16%), Positives = 24/73 (32%), Gaps = 11/73 (15%)
Query: 84 GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALI 143
GA K +D I+ + + + GA++I + E I
Sbjct: 79 GARVGT-AADAKTADVILKVRRPSAQE--------ISGYRSGAVVI--AIMDPYGNEEAI 127
Query: 144 DFIADIRVISISM 156
+A + + +M
Sbjct: 128 SAMAGAGLTTFAM 140
>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI;
2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A
2vhz_A* 2vhv_A* 2voe_A 2voj_A*
Length = 377
Score = 35.9 bits (84), Expect = 0.011
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 11/55 (20%)
Query: 89 NIDDLCKQSDFII----ITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQ 139
++ K++D +I + A P L++ + + MKPGA+L++ + +DQ
Sbjct: 224 ELEGAVKRADLVIGAVLVPGAKAP---KLVSNSLVAHMKPGAVLVDIA----IDQ 271
>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA,
national project on protein structural and function
analyses; 2.71A {Thermus thermophilus}
Length = 369
Score = 35.5 bits (83), Expect = 0.012
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 11/55 (20%)
Query: 89 NIDDLCKQSDFII----ITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQ 139
NI + +D +I + A P L+ R L MK GA++++ + VDQ
Sbjct: 222 NIKKSVQHADLLIGAVLVPGAKAP---KLVTRDMLSLMKEGAVIVDVA----VDQ 269
>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD;
2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB:
1pjb_A* 1say_A
Length = 361
Score = 35.5 bits (83), Expect = 0.013
Identities = 11/55 (20%), Positives = 26/55 (47%), Gaps = 11/55 (20%)
Query: 89 NIDDLCKQSDFII----ITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQ 139
I+ ++D +I + P L+ + +E M+ G+++++ + VDQ
Sbjct: 223 EIETAVAEADLLIGAVLVPGRRAP---ILVPASLVEQMRTGSVIVDVA----VDQ 270
>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate
aldolase; sequestered tunnel, substrate channeling; HET:
NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1
Length = 312
Score = 35.3 bits (81), Expect = 0.015
Identities = 23/106 (21%), Positives = 38/106 (35%), Gaps = 13/106 (12%)
Query: 45 VGIVGCGRIGLSVLEKLIPYK--VSKFLYTSRSKKPEADKRGAE------HTNIDDLCKQ 96
V I+G G IG ++ K++ + + R + ++ L K
Sbjct: 7 VAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKL 66
Query: 97 SDF--IIITSALTPDTHHLINRARLESMKPGAILINTS---RGQLV 137
+F I T + H+ N A L KPG LI+ + G
Sbjct: 67 PEFADIDFVFDATSASAHVQNEALLRQAKPGIRLIDLTPAAIGPYC 112
>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural
genomics, PSI-2, protein structure initiative; HET: NDP;
3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6
Length = 276
Score = 35.2 bits (80), Expect = 0.018
Identities = 14/127 (11%), Positives = 37/127 (29%), Gaps = 11/127 (8%)
Query: 44 TVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSK---KPEADKRGAEHTNIDDLCKQSDFI 100
+ VG G + + + + SRS + A+ G + ++ + + +
Sbjct: 4 VLNFVGTGTLT-RFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVV 62
Query: 101 IIT---SALTPDTHHLINRARLESMKPGA----ILINTSRGQLVDQEALIDFIADIRVIS 153
+ + +HL + G I + R + + + +
Sbjct: 63 FVIVPDRYIKTVANHLNLGDAVLVHCSGFLSSEIFKKSGRASIHPNFSFSSLEKALEMKD 122
Query: 154 ISMVTNE 160
+ E
Sbjct: 123 QIVFGLE 129
>4ezb_A Uncharacterized conserved protein; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; 2.10A {Sinorhizobium meliloti}
Length = 317
Score = 35.3 bits (81), Expect = 0.018
Identities = 13/99 (13%), Positives = 35/99 (35%), Gaps = 11/99 (11%)
Query: 43 STVGIVGCGRIGLSVLEKLI---PYKVSKF------LYTSRSKKPEADKRGAEHTNIDDL 93
+T+ +G G S+ L +++ + S + + A + G E +
Sbjct: 25 TTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGVEPLDDVAG 84
Query: 94 CKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTS 132
+D ++ S + + + + A+ I+ +
Sbjct: 85 IACADVVL--SLVVGAATKAVAASAAPHLSDEAVFIDLN 121
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom
protein structure initiative, PSI, NEW YORK structural
GENO research consortium; HET: NAD; 1.95A {Listeria
innocua}
Length = 359
Score = 33.9 bits (78), Expect = 0.047
Identities = 15/75 (20%), Positives = 31/75 (41%), Gaps = 10/75 (13%)
Query: 45 VGIVGCGRIG---LSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEH-TNIDDLCKQS--D 98
+ IVG G +G +++ +V K+ A ++G + + + + D
Sbjct: 8 LVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREAAAQKGLKIYESYEAVLADEKVD 67
Query: 99 FIIITSALTP-DTHH 112
++I TP D+H
Sbjct: 68 AVLIA---TPNDSHK 79
>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative
oxidoreductase YVAA, oxidoredu PSI-2, protein structure
initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A
Length = 358
Score = 33.5 bits (77), Expect = 0.060
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 12/84 (14%)
Query: 45 VGIVGCGRIG----LSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEH-TNIDDLCKQS-- 97
VGI+G G G +L+ L Y++SK TSR+++ + D AE ++++
Sbjct: 8 VGILGYGLSGSVFHGPLLDVLDEYQISKI-MTSRTEEVKRDFPDAEVVHELEEITNDPAI 66
Query: 98 DFIIITSALTP-DTHHLINRARLE 120
+ +I+T TP H+ A ++
Sbjct: 67 ELVIVT---TPSGLHYEHTMACIQ 87
>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2,
protein structure initiative, M center for structural
genomics, MCSG; 2.19A {Bacteroides fragilis}
Length = 266
Score = 32.4 bits (73), Expect = 0.11
Identities = 15/96 (15%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
Query: 41 QNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSK---KPEADKRGAEHT-NIDDLCKQ 96
+++ + ++G G + ++ + L SR++ + A K AE+T ++ ++
Sbjct: 9 EDTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPY 68
Query: 97 SDFIIITSALTPDTHHLINRARLESMKPGAILINTS 132
+ I+ +L + + +E + A++++T+
Sbjct: 69 AKLYIV--SLKDSAFAELLQGIVEGKREEALMVHTA 102
>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate,
oxidative decarboxylation pathway, tyrosine
biosynthesis, oxidoreduct; HET: NAD; 2.10A
{Streptococcus mutans} PDB: 3dzb_A
Length = 290
Score = 31.8 bits (73), Expect = 0.20
Identities = 21/99 (21%), Positives = 35/99 (35%), Gaps = 11/99 (11%)
Query: 39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLY-TSRSKKP--EADKRGA---EHTNIDD 92
A++ T+ I G G IG S+ + + +RS + A +RG +
Sbjct: 3 AMEEKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKV 62
Query: 93 LCKQSDFIIITSALTP--DTHHLINRARLESMKPGAILI 129
+D II+ P T I +K I+
Sbjct: 63 FAALADVIILA---VPIKKTIDFIKILADLDLKEDVIIT 98
>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural
genomics, center FO structural genomics of infectious
diseases; HET: MSE; 2.75A {Yersinia pestis}
Length = 352
Score = 31.5 bits (72), Expect = 0.27
Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 12/76 (15%)
Query: 45 VGIVGCGRIG----LSVLEKLIPYKVSKFLYTSRSKKPEADKRGAE-HTNIDDLCKQS-- 97
VG++G G ++ +++ +S + K AD ++ L
Sbjct: 10 VGLLGYGYASKTFHAPLIMGTPGLELAGV-SSSDASKVHADWPAIPVVSDPQMLFNDPSI 68
Query: 98 DFIIITSALTP-DTHH 112
D I+I TP DTH
Sbjct: 69 DLIVIP---TPNDTHF 81
>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET:
NAP; 2.20A {Rattus norvegicus}
Length = 201
Score = 31.2 bits (70), Expect = 0.27
Identities = 31/142 (21%), Positives = 53/142 (37%), Gaps = 10/142 (7%)
Query: 44 TVGIVGCGRIGLSVLEKLIP--YKVSKFLYTSRS-KKPEADKRGAEHTNIDDLCKQSDFI 100
V I G G G S+ K++ Y V ++ SR+ + RGAE + +SD I
Sbjct: 21 VVCIFGTGDFGKSLGLKMLQCGYSV---VFGSRNPQVSSLLPRGAEVLCYSEAASRSDVI 77
Query: 101 IITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNE 160
+ L H A L G +LI+ S Q ++Q + +++ + V
Sbjct: 78 V----LAVHREHYDFLAELADSLKGRVLIDVSNNQKMNQYPESNAEYLAQLVPGAHVVKA 133
Query: 161 KHLHRVFTLGDSFHKGHVSAFI 182
+ + L F+
Sbjct: 134 FNTISAWALQSGTLDASRQVFV 155
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Length = 248
Score = 31.1 bits (71), Expect = 0.31
Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 20/82 (24%)
Query: 42 NSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFII 101
++ VG+ G + L V EK +K +K +C D +
Sbjct: 30 STAVGVRGRDIVVLGV-EKKSV---AKLQDERTVRK---------------ICALDDNVC 70
Query: 102 ITSA-LTPDTHHLINRARLESM 122
+ A LT D +INRAR+E
Sbjct: 71 MAFAGLTADARIVINRARVECQ 92
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain;
structural genomics, center for structural genomics of
infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium
difficile}
Length = 308
Score = 31.1 bits (71), Expect = 0.32
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 10/75 (13%)
Query: 45 VGIVGCGRIG----LSVLEKLIPYKVSKFLYTSRSKKPE--ADKRGAEH-TNIDDLCKQS 97
+G++G G I L +L K ++ +T K E +I+ L K+
Sbjct: 9 MGMIGLGSIAQKAYLPILTKSERFEF-VGAFTPNKVKREKICSDYRIMPFDSIESLAKKC 67
Query: 98 DFIIITSALTPDTHH 112
D I + S+ +TH+
Sbjct: 68 DCIFLHSS--TETHY 80
>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC,
11136F, structural genomics, protein structure
initiative; 2.04A {Klebsiella pneumoniae subsp}
Length = 364
Score = 31.1 bits (71), Expect = 0.34
Identities = 10/76 (13%), Positives = 28/76 (36%), Gaps = 12/76 (15%)
Query: 45 VGIVGCGRIG----LSVLEKLIPYKVSKFLYTSRSKKPEADKRGAE-HTNIDDLCKQS-- 97
+ ++G G +G ++ + ++ + +K + D + + +
Sbjct: 10 IALIGYGFVGKTFHAPLIRSVPGLNLAFV-ASRDEEKVKRDLPDVTVIASPEAAVQHPDV 68
Query: 98 DFIIITSALTP-DTHH 112
D ++I +P TH
Sbjct: 69 DLVVIA---SPNATHA 81
>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers,
NAD binding DOMA amino acid insertional region,
hydrolase; HET: ADN NAD; 1.60A {Mycobacterium
tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*
Length = 494
Score = 31.3 bits (71), Expect = 0.38
Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 79 EADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILIN 130
+A G + +++ +D I++T +I +++MK AIL N
Sbjct: 312 QAMMEGFDVVTVEEAIGDAD-IVVT---ATGNKDIIMLEHIKAMKDHAILGN 359
>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase;
HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB:
2ixb_A*
Length = 444
Score = 30.8 bits (69), Expect = 0.42
Identities = 14/101 (13%), Positives = 32/101 (31%), Gaps = 20/101 (19%)
Query: 29 SWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLI--------------PYKVSKFL-YTS 73
S + + + + G G + +E + PY V +
Sbjct: 7 SSTLFNIFDFNPKKVRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILK 66
Query: 74 RSKKPEADKRGAEHTNIDDLCKQS--DFIIITSALTPDTHH 112
++ K A G + + ++ K D + ++ +P H
Sbjct: 67 KNGKKPAKVFGNGNDDYKNMLKDKNIDAVFVS---SPWEWH 104
>2i99_A MU-crystallin homolog; thyroid hormine binding protein,
oxidoreductase; HET: NDP; 2.60A {Homo sapiens}
Length = 312
Score = 30.7 bits (70), Expect = 0.43
Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 14/95 (14%)
Query: 43 STVGIVGCGRIGLSVLEKLIP-YKVSKFLYTSRSKKP------EADKRGAEHTNIDDLCK 95
+ I+G G S E + + +R+K+ +++ +
Sbjct: 136 EVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQGEVRVCSSVQEAVA 195
Query: 96 QSDFIIITSALTPDTHHLINRARLESMKPGAILIN 130
+D +IIT +T T ++ + KPGA IN
Sbjct: 196 GAD-VIIT--VTLATEPILFGEWV---KPGA-HIN 223
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi
DSS, structural genomics, PSI-2, protein structure
initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Length = 286
Score = 30.6 bits (69), Expect = 0.46
Identities = 13/83 (15%), Positives = 26/83 (31%), Gaps = 10/83 (12%)
Query: 44 TVGIVGCGRIGLSVLEKLIP--YKVSKFLYTSRS--KKPEADKRGAEHTNIDDLCK---Q 96
T+ G G + L P +++ TSR+ + GAE
Sbjct: 7 TLLSFGHGYTARVLSRALAPQGWRIIG---TSRNPDQMEAIRASGAEPLLWPGEEPSLDG 63
Query: 97 SDFIIITSALTPDTHHLINRARL 119
++I++A ++
Sbjct: 64 VTHLLISTAPDSGGDPVLAALGD 86
>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis;
HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP:
a.151.1.1 c.2.1.7 d.58.39.1
Length = 404
Score = 30.6 bits (70), Expect = 0.48
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 9/88 (10%)
Query: 40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSK-KPE--ADKRGAEHTNIDDLCK- 95
L + TV +VG G +G +V + L+ V L +R+ + A G E D+L
Sbjct: 165 LHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDH 224
Query: 96 --QSDFIIITSALTPDTHHLINRARLES 121
+SD +++++ T H +I+ +
Sbjct: 225 LARSD-VVVSA--TAAPHPVIHVDDVRE 249
>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC,
structur genomics, protein structure initiative; 1.93A
{Bacteroides fragilis nctc 9343}
Length = 362
Score = 30.8 bits (70), Expect = 0.52
Identities = 12/76 (15%), Positives = 26/76 (34%), Gaps = 12/76 (15%)
Query: 45 VGIVGCGRIG----LSVLEKLIPYKVSKFLYTSRSKKPEADKRGAE-HTNIDDLCKQS-- 97
G+ G G + +++ K + + A + +L +
Sbjct: 8 TGLAAFGMSGQVFHAPFISTNPHFELYKI-VERSKELSKERYPQASIVRSFKELTEDPEI 66
Query: 98 DFIIITSALTP-DTHH 112
D I++ TP +TH+
Sbjct: 67 DLIVVN---TPDNTHY 79
>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural
genomics, NYSGXRC, PSI, protein structure initiative;
2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5
Length = 319
Score = 30.4 bits (69), Expect = 0.56
Identities = 12/75 (16%), Positives = 25/75 (33%), Gaps = 11/75 (14%)
Query: 45 VGIVGCGRIG----LSVLEKLIPYKVSKFLYTSRSKKPE--ADKRGAEH-TNIDDLCKQS 97
+G+VG G I L VL + + ++ K + + ++ L
Sbjct: 8 IGVVGLGGIAQKAWLPVLAAASDWTLQGA-WSPTRAKALPICESWRIPYADSLSSLAASC 66
Query: 98 DFIIITSALTPDTHH 112
D + + + H
Sbjct: 67 DAVFV---HSSTASH 78
>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; 2.30A {Enterococcus faecalis} PDB:
3fd8_A* 3hnp_A
Length = 349
Score = 30.3 bits (69), Expect = 0.56
Identities = 13/77 (16%), Positives = 29/77 (37%), Gaps = 11/77 (14%)
Query: 45 VGIVGCGRIG----LSVLEKLIPYKVSKFLYTSRSKKPEA--DKRGAEH-TNIDDLCKQS 97
+G +G G+ L + +V ++K A ++G ++++L
Sbjct: 5 MGFIGFGKSANRYHLPYVMIRETLEVKTIFDLHVNEKAAAPFKEKGVNFTADLNELLTDP 64
Query: 98 --DFIIITSALTPDTHH 112
+ I I + TH+
Sbjct: 65 EIELITICT--PAHTHY 79
>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium
falciparum} SCOP: c.2.1.4 c.23.12.3
Length = 479
Score = 30.5 bits (69), Expect = 0.61
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 4/52 (7%)
Query: 79 EADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILIN 130
+A G +D++ + D IT +I L MK A++ N
Sbjct: 295 QAVMEGFNVVTLDEIVDKGD-FFIT---CTGNVDVIKLEHLLKMKNNAVVGN 342
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Length = 263
Score = 29.9 bits (68), Expect = 0.64
Identities = 17/82 (20%), Positives = 26/82 (31%), Gaps = 22/82 (26%)
Query: 42 NSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFII 101
++TVG+ L K + L + K + + I
Sbjct: 33 SATVGLKSKTHAVLVA-LKRAQSE----LAAHQKK----------------ILHVDNHIG 71
Query: 102 ITSA-LTPDTHHLINRARLESM 122
I+ A LT D L N R E +
Sbjct: 72 ISIAGLTADARLLCNFMRQECL 93
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Length = 241
Score = 29.8 bits (68), Expect = 0.65
Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 20/80 (25%)
Query: 44 TVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIIT 103
+GI + L+V EK I S + S +K + + I
Sbjct: 37 AIGIQTSEGVCLAV-EKRIT---SPLMEPSSIEK---------------IVEIDAHIGCA 77
Query: 104 SA-LTPDTHHLINRARLESM 122
+ L D LI++AR+E+
Sbjct: 78 MSGLIADAKTLIDKARVETQ 97
>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics,
seattle structural G center for infectious disease; HET:
ADN NAD; 2.39A {Brucella melitensis biovar abortus}
Length = 464
Score = 30.4 bits (69), Expect = 0.68
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 79 EADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILIN 130
+A G E +DD +D I++T T +I + MK I+ N
Sbjct: 285 QAAMDGFEVVTLDDAASTAD-IVVT---TTGNKDVITIDHMRKMKDMCIVGN 332
>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid,
S-adenosyl-L-homocysteine hydro NAD, one-carbon
metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei}
PDB: 3glq_A*
Length = 494
Score = 30.1 bits (68), Expect = 0.73
Identities = 12/52 (23%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 79 EADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILIN 130
+A G ++ ++D I +T +H+IN +++M+ AI+ N
Sbjct: 315 QAAMEGYRVVTMEYAADKAD-IFVT---ATGNYHVINHDHMKAMRHNAIVCN 362
>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex,
NAD cofactor, regul SAM-dependent methylation reactions;
HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A*
3onf_A*
Length = 488
Score = 29.7 bits (67), Expect = 1.0
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 79 EADKRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILIN 130
+A G + ++D+ ++D I +T T +I ++ MK AI+ N
Sbjct: 303 QATMEGLQVLTLEDVVSEAD-IFVT---TTGNKDIIMLDHMKKMKNNAIVCN 350
>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione
reductase, glutathione-dependent formaldehyde
dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo
sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A*
2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*
Length = 373
Score = 29.5 bits (67), Expect = 1.0
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 43 STVGIVGCGRIGLSVLE 59
S + G G +GL+V+
Sbjct: 192 SVCAVFGLGGVGLAVIM 208
>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK
structural genomix research consortium, NYSGXRC, PSI-2;
2.60A {Bradyrhizobium japonicum}
Length = 383
Score = 29.8 bits (67), Expect = 1.1
Identities = 14/90 (15%), Positives = 26/90 (28%), Gaps = 4/90 (4%)
Query: 39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--ADKRGAEH--TNIDDLC 94
Q+ IV G L+ L ++K E A + T++D
Sbjct: 20 LNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKVEALAKRFNIARWTTDLDAAL 79
Query: 95 KQSDFIIITSALTPDTHHLINRARLESMKP 124
+ + A T + + + K
Sbjct: 80 ADKNDTMFFDAATTQARPGLLTQAINAGKH 109
>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis
TOH structural genomics, PSI-2, protein structure
initiative; 1.70A {Bordetella pertussis}
Length = 313
Score = 29.5 bits (67), Expect = 1.1
Identities = 20/93 (21%), Positives = 33/93 (35%), Gaps = 16/93 (17%)
Query: 43 STVGIVGCGRIGLSVLEKLIP-YKVSKFLYTSRSKKPEADKRGAEHTNID-------DLC 94
S +G+ G G G +L + + L PE +R + D+
Sbjct: 122 SVLGLFGAGTQGAEHAAQLSARFALEAILVHDPYASPEILERIGRRCGVPARMAAPADIA 181
Query: 95 KQSDFII-ITSALTPDTHHLINRARLESMKPGA 126
Q+D ++ T + TP L L + GA
Sbjct: 182 AQADIVVTATRSTTP----LFAGQAL---RAGA 207
>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG,
PSI-2, GFO/IDH/MO family, protein structure initiative;
HET: MSE EPE; 1.80A {Porphyromonas gingivalis}
Length = 304
Score = 29.5 bits (66), Expect = 1.1
Identities = 13/103 (12%), Positives = 23/103 (22%), Gaps = 1/103 (0%)
Query: 45 VGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITS 104
IVG G IG L+ L + R E + D+ + +
Sbjct: 12 AAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEVPFELQPFRVVSDIEQLESVDVALV 71
Query: 105 ALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIA 147
L+ ++ + A
Sbjct: 72 CSPSREVERTALEILKKGIC-TADSFDIHDGILALRRSLGDAA 113
>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics,
pyrroline reductase, oxidoredu structural genomics
consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}
Length = 262
Score = 29.4 bits (67), Expect = 1.2
Identities = 11/67 (16%), Positives = 28/67 (41%), Gaps = 6/67 (8%)
Query: 39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSKF--LYTSRSKKPEADKRGAEHT-NIDDLCK 95
++N +G +G G++G ++ + + K L+ P + + ++L +
Sbjct: 1 GMENIKLGFMGLGQMGSALAHGIANANIIKKENLFYYG---PSKKNTTLNYMSSNEELAR 57
Query: 96 QSDFIII 102
D I+
Sbjct: 58 HCDIIVC 64
>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination,
NAD, zinc, inhibition, acetylation, metal-binding; HET:
NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB:
1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A*
1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A
1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...
Length = 374
Score = 29.5 bits (67), Expect = 1.2
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 43 STVGIVGCGRIGLSVLE 59
ST + G G +GLSV+
Sbjct: 193 STCAVFGLGGVGLSVIM 209
>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase
(CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias}
SCOP: b.35.1.2 c.2.1.1
Length = 374
Score = 29.5 bits (67), Expect = 1.2
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 43 STVGIVGCGRIGLSVLE 59
ST + G G +GL+ +
Sbjct: 194 STCAVFGLGAVGLAAVM 210
>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus}
SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*
Length = 376
Score = 29.5 bits (67), Expect = 1.2
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 43 STVGIVGCGRIGLSVLE 59
ST + G G +GLS +
Sbjct: 197 STCAVFGLGCVGLSAII 213
>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology,
NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana
perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*
Length = 373
Score = 29.5 bits (67), Expect = 1.2
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 43 STVGIVGCGRIGLSVLE 59
ST + G G +G S +
Sbjct: 193 STCAVFGLGGVGFSAIV 209
>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.00A {Escherichia coli k-12}
Length = 345
Score = 29.2 bits (66), Expect = 1.2
Identities = 9/75 (12%), Positives = 23/75 (30%), Gaps = 7/75 (9%)
Query: 45 VGIVGCGRIG----LSVLEKLIPYKVSKFLYTSRSKKPE--ADKRGAE-HTNIDDLCKQS 97
+G G+ L + ++ +K E +++D++
Sbjct: 5 CAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDP 64
Query: 98 DFIIITSALTPDTHH 112
D ++ D+H
Sbjct: 65 DVKLVVVCTHADSHF 79
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C*
1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C*
3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C*
3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Length = 241
Score = 28.8 bits (65), Expect = 1.5
Identities = 8/31 (25%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 93 LCKQSDFIIITSA-LTPDTHHLINRARLESM 122
+ K ++++ + L D+ LI +AR+E+
Sbjct: 62 VSKIDSHVVLSFSGLNADSRILIEKARVEAQ 92
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 2.14A {Thermotoga maritima}
Length = 337
Score = 29.2 bits (66), Expect = 1.5
Identities = 8/77 (10%), Positives = 22/77 (28%), Gaps = 9/77 (11%)
Query: 45 VGIVGCGRIGLSVLEKLIPY-KVSKFLYTSRSKKPE-ADKRGAEH-------TNIDDLCK 95
+ ++G LE L ++ + +K +E N ++ +
Sbjct: 5 ICVIGSSGHFRYALEGLDEECSITGIAPGVPEEDLSKLEKAISEMNIKPKKYNNWWEMLE 64
Query: 96 QSDFIIITSALTPDTHH 112
+ I+ +
Sbjct: 65 KEKPDILVINTVFSLNG 81
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Length = 233
Score = 28.7 bits (65), Expect = 1.5
Identities = 15/80 (18%), Positives = 26/80 (32%), Gaps = 20/80 (25%)
Query: 44 TVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIIT 103
+VGI + L+ EK S K + + I +
Sbjct: 34 SVGIKAANGVVLAT-EKKQK---SILYDERSVHK---------------VEPITKHIGLV 74
Query: 104 SA-LTPDTHHLINRARLESM 122
+ + PD L++RAR +
Sbjct: 75 YSGMGPDYRVLVHRARKLAQ 94
>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics,
SGC stockholm, S genomics consortium, SGC, hydrolase,
NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB:
3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A*
1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*
Length = 436
Score = 29.1 bits (66), Expect = 1.6
Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 84 GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILIN 130
G + ++D+ +++ I +T T +I M+ AI+ N
Sbjct: 254 GYQVLLVEDVVEEAH-IFVT---TTGNDDIITSEHFPRMRDDAIVCN 296
>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD;
1.90A {Archaeoglobus fulgidus}
Length = 236
Score = 28.9 bits (64), Expect = 1.6
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 45 VGIVGCGRIGLSVLEKL 61
VG++G G IG + E L
Sbjct: 3 VGLIGYGAIGKFLAEWL 19
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal
nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO
MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G*
3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 3bdm_F* 1fnt_G* 2zcy_F*
Length = 288
Score = 28.9 bits (65), Expect = 1.6
Identities = 22/84 (26%), Positives = 32/84 (38%), Gaps = 21/84 (25%)
Query: 41 QNST-VGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDF 99
+T +GI + +V EKLI SK L ++ K +
Sbjct: 33 NGTTSIGIKCNDGVVFAV-EKLIT---SKLLVPQKNVK---------------IQVVDRH 73
Query: 100 IIITSA-LTPDTHHLINRARLESM 122
I + L PD HL+NR R E+
Sbjct: 74 IGCVYSGLIPDGRHLVNRGREEAA 97
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase,
protease, threonine protease; 4.10A {Methanocaldococcus
jannaschii}
Length = 264
Score = 28.8 bits (65), Expect = 1.7
Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 19/65 (29%)
Query: 59 EKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSA-LTPDTHHLINRA 117
++ I SK + +K + + D + ++ L D LI+RA
Sbjct: 55 DRRIT---SKLVKIRSIEK---------------IFQIDDHVAAATSGLVADARVLIDRA 96
Query: 118 RLESM 122
RLE+
Sbjct: 97 RLEAQ 101
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E*
1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E*
3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E*
3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Length = 233
Score = 28.7 bits (65), Expect = 1.7
Identities = 15/80 (18%), Positives = 25/80 (31%), Gaps = 22/80 (27%)
Query: 44 TVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIIT 103
TVG+ L K + L + + K + K + + ++
Sbjct: 34 TVGLRSNTHAVLVA-LKRNA---DE-LSSYQKK----------------IIKCDEHMGLS 72
Query: 104 SA-LTPDTHHLINRARLESM 122
A L PD L N R +
Sbjct: 73 LAGLAPDARVLSNYLRQQCN 92
>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase,
NAD, one-carbon metabolism, phosphoprotein; HET: NAD;
2.25A {Homo sapiens} PDB: 3mtg_A*
Length = 435
Score = 29.1 bits (66), Expect = 1.8
Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 84 GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILIN 130
G ++++ +Q D I+IT +++ R L+ MK I+ N
Sbjct: 263 GFRLVKLNEVIRQVD-IVIT---CTGNKNVVTREHLDRMKNSCIVCN 305
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G*
1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G*
3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G*
3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Length = 243
Score = 28.7 bits (65), Expect = 1.9
Identities = 12/80 (15%), Positives = 24/80 (30%), Gaps = 20/80 (25%)
Query: 44 TVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIIT 103
++ + G + +K +P K L + + S I +
Sbjct: 33 SLAVRGKDCTVVIS-QKKVP---DKLLDPTTVSY---------------IFCISRTIGMV 73
Query: 104 SA-LTPDTHHLINRARLESM 122
PD + RA+ E+
Sbjct: 74 VNGPIPDARNAALRAKAEAA 93
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F*
1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F*
3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F*
3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Length = 244
Score = 28.8 bits (65), Expect = 2.0
Identities = 22/84 (26%), Positives = 32/84 (38%), Gaps = 21/84 (25%)
Query: 41 QNST-VGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDF 99
+T +GI + +V EKLI SK L ++ K +
Sbjct: 29 NGTTSIGIKCNDGVVFAV-EKLIT---SKLLVPQKNVK---------------IQVVDRH 69
Query: 100 IIITSA-LTPDTHHLINRARLESM 122
I + L PD HL+NR R E+
Sbjct: 70 IGCVYSGLIPDGRHLVNRGREEAA 93
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D*
1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D*
3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D*
3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Length = 242
Score = 28.4 bits (64), Expect = 2.0
Identities = 16/80 (20%), Positives = 26/80 (32%), Gaps = 20/80 (25%)
Query: 44 TVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIIT 103
+GI + L V EK S L + +K + + I
Sbjct: 29 AIGIATKEGVVLGV-EKRAT---SPLLESDSIEK---------------IVEIDRHIGCA 69
Query: 104 SA-LTPDTHHLINRARLESM 122
+ LT D +I AR ++
Sbjct: 70 MSGLTADARSMIEHARTAAV 89
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B*
1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B*
3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B*
3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Length = 244
Score = 28.4 bits (64), Expect = 2.1
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 86 EHTNIDDLCKQSDFIIITSA-LTPDTHHLINRARLESM 122
+ T+ + L K +D I + A LT D LIN AR+ +
Sbjct: 58 QDTSTEKLYKLNDKIAVAVAGLTADAEILINTARIHAQ 95
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Length = 254
Score = 28.5 bits (64), Expect = 2.1
Identities = 14/65 (21%), Positives = 21/65 (32%), Gaps = 19/65 (29%)
Query: 59 EKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSA-LTPDTHHLINRA 117
EKL+ SK +K+ L + + A L D L + A
Sbjct: 50 EKLVL---SKLYEEGSNKR---------------LFNVDRHVGMAVAGLLADARSLADIA 91
Query: 118 RLESM 122
R E+
Sbjct: 92 REEAS 96
>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds
L-proline, 2 bundle, beta barrel, rossmann fold, lyase;
HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP:
c.2.1.13 PDB: 1u7h_A*
Length = 350
Score = 28.5 bits (64), Expect = 2.1
Identities = 13/97 (13%), Positives = 27/97 (27%), Gaps = 19/97 (19%)
Query: 43 STVGIVGCGRIGLSVLEKLIP-YKVSKFLYTSRSKKPEADKRGAEH------------TN 89
+ ++G G + + + P A + + ++
Sbjct: 130 RKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTD--PLATAKLIANLKEYSGLTIRRASS 187
Query: 90 IDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGA 126
+ + K D II T +I L +PG
Sbjct: 188 VAEAVKGVD-IITTVTADKAYATIITPDML---EPGM 220
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Length = 261
Score = 28.4 bits (64), Expect = 2.2
Identities = 8/31 (25%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 93 LCKQSDFIIITSA-LTPDTHHLINRARLESM 122
+ K ++ + + A +T D + L N RL +
Sbjct: 65 IYKLNEDMACSVAGITSDANVLTNELRLIAQ 95
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell
cycle, cell division, cell shape, cell WAL
biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia
coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A*
2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A*
2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Length = 439
Score = 28.7 bits (65), Expect = 2.2
Identities = 18/86 (20%), Positives = 32/86 (37%), Gaps = 10/86 (11%)
Query: 40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAE-------HTNIDD 92
Q V I+G G GLS ++ + V+ + +R P DK D+
Sbjct: 3 YQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLN--DE 60
Query: 93 LCKQSDFIIITSALTPDTHHLINRAR 118
+D I+ + + H ++ A
Sbjct: 61 WLMAADLIVASPGI-ALAHPSLSAAA 85
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION
transporter, symporter, transport protein; HET: NAI;
2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A*
2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Length = 144
Score = 27.7 bits (62), Expect = 2.2
Identities = 7/23 (30%), Positives = 15/23 (65%)
Query: 40 LQNSTVGIVGCGRIGLSVLEKLI 62
++N ++G GR G S++++L
Sbjct: 4 IKNKQFAVIGLGRFGGSIVKELH 26
>1yb4_A Tartronic semialdehyde reductase; structural genomics,
oxidoreductase, salmonella typhimurium LT2, PSI, protein
ST initiative; 2.40A {Salmonella typhimurium}
Length = 295
Score = 28.3 bits (64), Expect = 2.3
Identities = 10/62 (16%), Positives = 19/62 (30%), Gaps = 3/62 (4%)
Query: 71 YTSRSKKPEADKRGAE-HTNIDDLCKQSDFIIITSALTPDTHHLINRAR--LESMKPGAI 127
T E GA + + +D I I TP ++ ++ G
Sbjct: 32 TTIGPVADELLSLGAVNVETARQVTEFADIIFIMVPDTPQVEDVLFGEHGCAKTSLQGKT 91
Query: 128 LI 129
++
Sbjct: 92 IV 93
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase,
carbamoyl phosphate, transferas catalytic cycle; 2.10A
{Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Length = 304
Score = 28.2 bits (64), Expect = 2.4
Identities = 11/53 (20%), Positives = 24/53 (45%), Gaps = 11/53 (20%)
Query: 87 HTNIDDLCKQSDFII--------ITSALTPDTHHL---INRARLESMKPGAIL 128
+ ++D+ + SD ++ SA++ + + + R E MK AI+
Sbjct: 194 YVSMDEAVESSDVVMLLRIQNERHQSAVSQEGYLNKYGLTVERAERMKRHAII 246
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP
binding, structure function project, S2F, unknown
function; 2.00A {Escherichia coli} SCOP: c.37.1.10
d.237.1.1
Length = 318
Score = 28.3 bits (64), Expect = 2.5
Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 4/48 (8%)
Query: 98 DFIIITSA-LTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALID 144
D I++T + + L RL + A + + G +D L +
Sbjct: 153 DRILLTKTDVAGEAEKL--HERLARINARAPVYTVTHGD-IDLGLLFN 197
>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in
PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent,
oxidoreductase; HET: NAP; 3.00A {Saccharomyces
cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A
Length = 360
Score = 28.3 bits (64), Expect = 2.5
Identities = 25/122 (20%), Positives = 42/122 (34%), Gaps = 37/122 (30%)
Query: 30 WAP--NFMCGPALQNSTVGIVGCGRIG-LSVLEKLIPYKVSKF----------LYTSRSK 76
++P CGP VGIVG G IG + + S K
Sbjct: 169 YSPLVRNGCGP---GKKVGIVGLGGIGSMGT----------LISKAMGAETYVISRSSRK 215
Query: 77 KPEADKRGAEH----TNIDDLCKQS----DFIIITSALTPDTHHLINRARLESMKPGAIL 128
+ +A K GA+H D ++ D I++ + ++MK G +
Sbjct: 216 REDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVC---ASSLTDIDFNIMPKAMKVGGRI 272
Query: 129 IN 130
++
Sbjct: 273 VS 274
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator
11S, hydrolase-HYD activator complex; 1.90A
{Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A
1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A
3jse_A 3jtl_A
Length = 233
Score = 28.0 bits (63), Expect = 2.6
Identities = 9/65 (13%), Positives = 24/65 (36%), Gaps = 19/65 (29%)
Query: 59 EKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSA-LTPDTHHLINRA 117
+K + S+ + + +K + D++ ++ L D L++ A
Sbjct: 51 DKKVR---SRLIEQNSIEK---------------IQLIDDYVAAVTSGLVADARVLVDFA 92
Query: 118 RLESM 122
R+ +
Sbjct: 93 RISAQ 97
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Length = 246
Score = 28.3 bits (64), Expect = 2.7
Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 19/65 (29%)
Query: 59 EKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSA-LTPDTHHLINRA 117
+K +P K L +S L K ++ I +T D+ + RA
Sbjct: 53 QKKVP---DKLLDSSTVTH---------------LFKITENIGCVMTGMTADSRSQVQRA 94
Query: 118 RLESM 122
R E+
Sbjct: 95 RYEAA 99
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B
1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A*
2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A*
3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Length = 250
Score = 28.0 bits (63), Expect = 2.7
Identities = 11/80 (13%), Positives = 26/80 (32%), Gaps = 20/80 (25%)
Query: 44 TVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIIT 103
++GI + ++ EK S + K + + I
Sbjct: 34 SLGIKATNGVVIAT-EKKSS---SPLAMSETLSK---------------VSLLTPDIGAV 74
Query: 104 SA-LTPDTHHLINRARLESM 122
+ + PD L++++R +
Sbjct: 75 YSGMGPDYRVLVDKSRKVAH 94
>3l6d_A Putative oxidoreductase; structural genomics, protein structure
initiative, oxidoredu PSI-2; HET: MSE; 1.90A
{Pseudomonas putida}
Length = 306
Score = 28.0 bits (63), Expect = 2.9
Identities = 8/61 (13%), Positives = 17/61 (27%), Gaps = 1/61 (1%)
Query: 73 SRSKKPEADKRGAEH-TNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINT 131
S K GA ++ S I TH ++ + +++
Sbjct: 41 SPGKAAALVAAGAHLCESVKAALSASPATIFVLLDNHATHEVLGMPGVARALAHRTIVDY 100
Query: 132 S 132
+
Sbjct: 101 T 101
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A
{Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Length = 246
Score = 28.0 bits (63), Expect = 2.9
Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 19/65 (29%)
Query: 59 EKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITSA-LTPDTHHLINRA 117
+K + SK L +K + K + I ++ L D LI+RA
Sbjct: 51 DKRVG---SKLLEKDTIEK---------------IYKIDEHICAATSGLVADARVLIDRA 92
Query: 118 RLESM 122
R+E+
Sbjct: 93 RIEAQ 97
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein
structure initiativ midwest center for structural
genomics; 2.50A {Bordetella bronchiseptica}
Length = 387
Score = 28.2 bits (63), Expect = 3.0
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 45 VGIVGCGRIGLSVLEKLI 62
GI G G G ++ +
Sbjct: 5 FGICGLGFAGSVLMAPAM 22
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 28.0 bits (63), Expect = 3.2
Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 21/97 (21%)
Query: 98 DFIIITSALTPDTH-HLINR----ARLESMKPGAILIN----TSRGQLVDQEALIDFIAD 148
D I+I SA+ P+ ++I+R ++P I++N + +D +
Sbjct: 132 DQIVIVSAILPELSLNIIDRYLVGCETLQVEP-LIVLNKIDLLDDEGMDFVNEQMDIYRN 190
Query: 149 I--RVISISMVTNE--KHLHRVFTLGDSFHKGHVSAF 181
I RV+ +S T + K L G +S F
Sbjct: 191 IGYRVLMVSSHTQDGLKPLEEAL-------TGRISIF 220
>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer,
rossmann-fold NAD domain, human MU crystallin homolog;
HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13
PDB: 1vll_A
Length = 322
Score = 28.0 bits (63), Expect = 3.4
Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 14/92 (15%)
Query: 43 STVGIVGCGRIGLSVLEKLIP-YKVSKFLYTSRSKKP------EADKRGAE-HTNIDDLC 94
S G +GCG LE L + + + +K + RG +
Sbjct: 126 SVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQPAEEA 185
Query: 95 KQSDFIIITSALTPDTHHLINRARLESMKPGA 126
+ D +++T+ TP ++ + + G
Sbjct: 186 SRCD-VLVTT--TPSRKPVVKAEWV---EEGT 211
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H)
oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Length = 348
Score = 27.9 bits (63), Expect = 4.0
Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 28/89 (31%)
Query: 30 WAP--NFMCGPALQNSTVGIVGCGRIG-LSVLEKLIPYKVSKF----------LYTSRSK 76
++P + VG+ G G +G ++V K+ + K
Sbjct: 166 YSPLKFSKVTK---GTKVGVAGFGGLGSMAV----------KYAVAMGAEVSVFARNEHK 212
Query: 77 KPEADKRGAEH--TNIDDLCKQSDFIIIT 103
K +A G +H T+ ++ DFII T
Sbjct: 213 KQDALSMGVKHFYTDPKQCKEELDFIIST 241
>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein
structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA
family oxidoreductase; 2.65A {Vibrio cholerae} SCOP:
c.2.1.3 d.81.1.5
Length = 323
Score = 27.8 bits (62), Expect = 4.2
Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 13/89 (14%)
Query: 45 VGIVGCGRIG----LSVLEKLIPYKVSKFLYTSRSKKPE--ADKRGAEH--TNIDDLCKQ 96
+ ++G G I L VL + ++ L T K A + T+ D+ +
Sbjct: 5 IAMIGLGDIAQKAYLPVLAQWPDIELV--LCTRNPKVLGTLATRYRVSATCTDYRDVLQY 62
Query: 97 S-DFIIITSALTPDTHHLINRARLESMKP 124
D ++I +A D H + L P
Sbjct: 63 GVDAVMIHAA--TDVHSTLAAFFLHLGIP 89
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase;
monomer: alpha/beta domain, helix bundle, trimer of
dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus
kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A*
3iqe_A* 3iqf_A* 3iqz_A*
Length = 283
Score = 27.7 bits (61), Expect = 4.3
Identities = 12/67 (17%), Positives = 23/67 (34%), Gaps = 7/67 (10%)
Query: 45 VGIVGCGRIGLSVLEKLI------PYKVSKFLYTSRSK-KPEADKRGAEHTNIDDLCKQS 97
+ CG +G S++ ++ V + + K PE + E +
Sbjct: 6 AIFIKCGNLGTSMMMDMLLDERADREDVEFRVVGTSVKMDPECVEAAVEMALDIAEDFEP 65
Query: 98 DFIIITS 104
DFI+
Sbjct: 66 DFIVYGG 72
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA
NAD-binding rossmann fold, structural genomics; HET:
NAD; 2.40A {Lactobacillus plantarum WCFS1}
Length = 346
Score = 27.7 bits (62), Expect = 4.5
Identities = 5/10 (50%), Positives = 7/10 (70%)
Query: 45 VGIVGCGRIG 54
I+G GR+G
Sbjct: 11 AAIIGLGRLG 20
>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG,
PSI, protein structure initiative, joint center for S
genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2
c.2.1.1
Length = 380
Score = 27.6 bits (62), Expect = 4.5
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 43 STVGIVGCGRIGLSVL 58
TV I G G +GL +
Sbjct: 197 KTVVIQGAGPLGLFGV 212
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2,
protein structure initiative; 2.04A {Thermotoga
maritima}
Length = 344
Score = 27.6 bits (62), Expect = 4.6
Identities = 6/10 (60%), Positives = 9/10 (90%)
Query: 45 VGIVGCGRIG 54
+G++G GRIG
Sbjct: 5 IGVIGLGRIG 14
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2,
protein structure in midwest center for structural
genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella
typhimurium}
Length = 357
Score = 27.7 bits (62), Expect = 4.6
Identities = 7/10 (70%), Positives = 7/10 (70%)
Query: 45 VGIVGCGRIG 54
GIVG G IG
Sbjct: 26 AGIVGIGMIG 35
>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET:
NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2
c.2.1.1
Length = 371
Score = 27.5 bits (62), Expect = 5.5
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 43 STVGIVGCGRIGLSVL 58
S+ G G +GLS L
Sbjct: 192 SSFVTWGAGAVGLSAL 207
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol
dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE;
1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A*
3nto_A* 3ntq_A* 3ntr_A*
Length = 344
Score = 27.3 bits (61), Expect = 5.7
Identities = 5/10 (50%), Positives = 8/10 (80%)
Query: 45 VGIVGCGRIG 54
+G++G G IG
Sbjct: 5 IGVIGTGAIG 14
>2dpo_A L-gulonate 3-dehydrogenase; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
1.70A {Oryctolagus cuniculus} PDB: 2ep9_A* 3ado_A 3a97_A
3adp_A* 3f3s_A*
Length = 319
Score = 27.3 bits (61), Expect = 5.9
Identities = 15/94 (15%), Positives = 23/94 (24%), Gaps = 29/94 (30%)
Query: 35 MCGPALQNSTVGIVGCGRIG---------------------------LSVLEKLIPYKVS 67
M PA + V IVG G +G L + K +
Sbjct: 1 MASPAAGD--VLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQ 58
Query: 68 KFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFII 101
E + TN+ + + I
Sbjct: 59 SGSLKGSLSAEEQLSLISSCTNLAEAVEGVVHIQ 92
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI
II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase,
tetramer; 2.30A {Corynebacterium glutamicum}
Length = 344
Score = 27.3 bits (61), Expect = 6.5
Identities = 5/10 (50%), Positives = 7/10 (70%)
Query: 45 VGIVGCGRIG 54
+ + G GRIG
Sbjct: 7 IALFGAGRIG 16
>2h78_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC6014, pseudomonas
aeruginosa PA01, PSI-2, structural genomics; HET: PG4;
2.20A {Pseudomonas aeruginosa} PDB: 3cum_A 3obb_A*
3q3c_A*
Length = 302
Score = 27.2 bits (61), Expect = 6.7
Identities = 18/99 (18%), Positives = 39/99 (39%), Gaps = 14/99 (14%)
Query: 43 STVGIVGCGRIGLSVLEKLIP--YKVSKFLYT-SRSKKPEADKRGAE-HTNIDDLCKQSD 98
+ +G G +G + L+ Y + ++ +S GA + D + +D
Sbjct: 4 KQIAFIGLGHMGAPMATNLLKAGYLL--NVFDLVQSAVDGLVAAGASAARSARDAVQGAD 61
Query: 99 FIIITSALTPDTHH-----LINRARLESMKPGAILINTS 132
++I+ P + H L + L + PG +++ S
Sbjct: 62 -VVISM--LPASQHVEGLYLDDDGLLAHIAPGTLVLECS 97
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI,
MCSG, structural genomics, midwest center for structural
genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Length = 451
Score = 27.2 bits (61), Expect = 7.1
Identities = 12/90 (13%), Positives = 28/90 (31%), Gaps = 14/90 (15%)
Query: 40 LQNSTVGIVGCGRIGLSVLEKLIP--YKVSKFLYTSRSKKPEADKRGAEHTNI------- 90
+N V ++G R G + L V + + + I
Sbjct: 7 FENKKVLVLGLARSGEAAARLLAKLGAIV--TVNDGKPFDENPTAQSLLEEGIKVVCGSH 64
Query: 91 --DDLCKQSDFIIITSALTPDTHHLINRAR 118
+ L + ++I + P + ++ +A
Sbjct: 65 PLELLDEDFCYMIKNPGI-PYNNPMVKKAL 93
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase;
2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB:
3a5c_H* 3a5d_H 3j0j_H*
Length = 109
Score = 25.9 bits (57), Expect = 7.3
Identities = 8/54 (14%), Positives = 19/54 (35%), Gaps = 2/54 (3%)
Query: 90 IDDLCKQSDF--IIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEA 141
++ L ++ + + + AL PD + R P + I + +
Sbjct: 38 LETLVERGGYALVAVDEALLPDPERAVERLMRGRDLPVLLPIAGLKEAFQGHDV 91
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding
oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium
violaceum} PDB: 3q2k_A*
Length = 354
Score = 26.9 bits (60), Expect = 7.3
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 45 VGIVGCGRIG 54
+VGCGRI
Sbjct: 16 FALVGCGRIA 25
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent
methyltransferase fold; 2.00A {Escherichia coli K12}
Length = 396
Score = 26.9 bits (60), Expect = 7.4
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 114 INRARLESMKPGAILINTSRGQLVDQEALIDFIAD 148
IN ++ + G IL+ S L+ + IAD
Sbjct: 321 INMLAIQLLNEGGILLTFSCSGLMTSDLFQKIIAD 355
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann,
PSI, M structural genomics; 1.70A {Archaeoglobus
fulgidus}
Length = 141
Score = 26.1 bits (58), Expect = 7.7
Identities = 3/17 (17%), Positives = 9/17 (52%)
Query: 45 VGIVGCGRIGLSVLEKL 61
++G G+ ++ +L
Sbjct: 9 YIVIGSEAAGVGLVREL 25
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein,
rossman fold, putative dehydrogenase, ST genomics;
1.70A {Desulfitobacterium hafniense dcb-2}
Length = 354
Score = 26.9 bits (60), Expect = 7.7
Identities = 4/10 (40%), Positives = 5/10 (50%)
Query: 45 VGIVGCGRIG 54
V +G GR
Sbjct: 8 VAAIGLGRWA 17
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural
genomics, PSI, protein structure initiative; 1.80A
{Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Length = 396
Score = 26.7 bits (59), Expect = 8.5
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 114 INRARLESMKPGAILINTSRGQLVDQEALIDFIAD 148
+N A L +K G IL+ S Q VD + D I
Sbjct: 317 VNFAGLNLVKDGGILVTCSCSQHVDLQMFKDMIIA 351
>2z2v_A Hypothetical protein PH1688; L-lysine dehydrogenase,
oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
PDB: 3a63_A* 3abi_A*
Length = 365
Score = 26.9 bits (59), Expect = 9.3
Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 13/86 (15%)
Query: 45 VGIVGCGRIGLSVLEKLIP-YKVSKFLYTSRSKKPEADKRGAEHTNID--------DLCK 95
V I+G G IG ++ L + V ++ ++ E K A +D ++ K
Sbjct: 19 VLILGAGNIGRAIAWDLKDEFDV--YIGDVNNENLEKVKEFATPLKVDASNFDKLVEVMK 76
Query: 96 QSDFIIITSALTPDTHHLINRARLES 121
+ + +I AL +A ++S
Sbjct: 77 EFELVI--GALPGFLGFKSIKAAIKS 100
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown
function, PSI-2, protein structure initiative; 1.44A
{Methylobacillus flagellatus KT}
Length = 286
Score = 26.6 bits (59), Expect = 9.5
Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 11/73 (15%)
Query: 44 TVGIVGCGRIGLSVLEKLIP--YKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFII 101
+ I GCG +GL + +L ++V+ RS + G + D +
Sbjct: 5 KILIAGCGDLGLELARRLTAQGHEVTG---LRRS--AQPMPAGVQTLIADV----TRPDT 55
Query: 102 ITSALTPDTHHLI 114
+ S + L+
Sbjct: 56 LASIVHLRPEILV 68
>3hl4_A Choline-phosphate cytidylyltransferase A; rossmann fold,
phospholipid synthesis, phosphatidylcholine,
phosphocholine, CTP, CDP-choline; HET: CDC; 2.20A
{Rattus norvegicus}
Length = 236
Score = 26.5 bits (58), Expect = 9.7
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 165 RVFTLG--DSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKK 208
RV+ G D FH GH A + + +T I + S K
Sbjct: 78 RVYADGIFDLFHSGHARALMQAKNLFPNTYLIVGVCSDELTHNFKG 123
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.139 0.417
Gapped
Lambda K H
0.267 0.0783 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,221,158
Number of extensions: 250468
Number of successful extensions: 832
Number of sequences better than 10.0: 1
Number of HSP's gapped: 751
Number of HSP's successfully gapped: 192
Length of query: 274
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 182
Effective length of database: 4,133,061
Effective search space: 752217102
Effective search space used: 752217102
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (25.2 bits)