RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3240
(274 letters)
>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 184
Score = 71.5 bits (174), Expect = 7e-16
Identities = 57/212 (26%), Positives = 80/212 (37%), Gaps = 59/212 (27%)
Query: 30 WAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTN 89
W + G + TVG+VG GRIG V +++ + Y A + G E +
Sbjct: 32 WKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIELLS 91
Query: 90 IDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADI 149
+DDL ++DFI + TP+T LI++ L KPG I++N +R
Sbjct: 92 LDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAAR---------------- 135
Query: 150 RVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSASDVLKAKKI 209
L L D+ GHV A
Sbjct: 136 -----------GGLVDEAALADAITGGHVRA----------------------------- 155
Query: 210 RGAGLDVMYPEPLPLDSPLLQLDNCVILPHIG 241
AGLDV EP DSPL +L V+ PH+G
Sbjct: 156 --AGLDVFATEPCT-DSPLFELAQVVVTPHLG 184
>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase
{Hyphomicrobium methylovorum [TaxId: 84]}
Length = 191
Score = 68.4 bits (166), Expect = 1e-14
Identities = 47/222 (21%), Positives = 78/222 (35%), Gaps = 61/222 (27%)
Query: 24 RGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE--AD 81
W W P + G L N T+GI G G IG ++ ++ + + + + A
Sbjct: 29 TRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEAS 88
Query: 82 KRGAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEA 141
+ H ++D L S F + + TP+T + N+A ++S+ GAI++NT+RG
Sbjct: 89 YQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARG------- 141
Query: 142 LIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIFSAS 201
L + + G ++ F
Sbjct: 142 --------------------DLVDNELVVAALEAGRLAYAGF------------------ 163
Query: 202 DVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIGSA 243
DV EP ++ L N + PHIGSA
Sbjct: 164 DVFA-------------GEP-NINEGYYDLPNTFLFPHIGSA 191
>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp.,
strain 101 [TaxId: 306]}
Length = 188
Score = 61.6 bits (148), Expect = 3e-12
Identities = 12/57 (21%), Positives = 26/57 (45%)
Query: 185 HMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPLPLDSPLLQLDNCVILPHIG 241
+++ + + + L++ ++ G DV +P+P P D P + + PHI
Sbjct: 131 YIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHIS 187
>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human
(Homo sapiens), Ctbp1 [TaxId: 9606]}
Length = 193
Score = 57.4 bits (137), Expect = 1e-10
Identities = 45/224 (20%), Positives = 68/224 (30%), Gaps = 64/224 (28%)
Query: 24 RGEWKS----WAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPE 79
G ++ T+GI+G GR+G +V + + + Y
Sbjct: 27 EGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGV 86
Query: 80 ADKRGAE-HTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVD 138
G + + + DL SD + + L HHLIN ++ M+ GA L+N
Sbjct: 87 ERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVN------TA 140
Query: 139 QEALIDFIADIRVISISMVTNEKHLHRVFTLGDSFHKGHVSAFIFIHMIMGDTVGIYFIF 198
+ L+D A
Sbjct: 141 RGGLVDEKA--------------------------------------------------- 149
Query: 199 SASDVLKAKKIRGAGLDVMYPEPLPL-DSPLLQLDNCVILPHIG 241
+ LK +IRGA LDV EP PL N + PH
Sbjct: 150 -LAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAA 192
>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase
{Escherichia coli [TaxId: 562]}
Length = 188
Score = 53.8 bits (128), Expect = 2e-09
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 202 DVLKAKKIRGAGLDVMYPEPL----PLDSPLLQLDNCVILPHIG 241
D L +K + GA +DV EP P SPL + DN ++ PHIG
Sbjct: 144 DALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIG 187
Score = 50.8 bits (120), Expect = 2e-08
Identities = 27/129 (20%), Positives = 50/129 (38%), Gaps = 5/129 (3%)
Query: 24 RGEWKSWAPNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKR 83
RG A + + G + ++ + ++Y +
Sbjct: 29 RGVGNKLAAGSFEARGKK-----LGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLGN 83
Query: 84 GAEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALI 143
+ ++ DL SD + + P T +++ + MKPG++LIN SRG +VD AL
Sbjct: 84 ATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALA 143
Query: 144 DFIADIRVI 152
D +A +
Sbjct: 144 DALASKHLA 152
>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon
Pyrobaculum aerophilum [TaxId: 13773]}
Length = 181
Score = 52.5 bits (124), Expect = 5e-09
Identities = 9/62 (14%), Positives = 16/62 (25%), Gaps = 1/62 (1%)
Query: 181 FIFIHMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMY-PEPLPLDSPLLQLDNCVILPH 239
+ + +LK + DV + D+ L N V P
Sbjct: 119 AEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPW 178
Query: 240 IG 241
+
Sbjct: 179 VA 180
>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase
{Lactobacillus casei [TaxId: 1582]}
Length = 199
Score = 43.7 bits (101), Expect = 6e-06
Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 13/70 (18%)
Query: 185 HMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEPL-------------PLDSPLLQL 231
+I + + LK+ K+ G G+D E PL LL +
Sbjct: 128 IVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGM 187
Query: 232 DNCVILPHIG 241
N V+ PHI
Sbjct: 188 PNVVLSPHIA 197
>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1
{Salmonella typhimurium [TaxId: 90371]}
Length = 113
Score = 39.7 bits (92), Expect = 4e-05
Identities = 17/116 (14%), Positives = 32/116 (27%), Gaps = 9/116 (7%)
Query: 32 PNFMCGPALQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAE-HTNI 90
P F L++ IVG G + L+ + T +
Sbjct: 5 PIFC---QLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLV 61
Query: 91 DDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFI 146
+ ++ A+ +N+ ++ + I N VD FI
Sbjct: 62 EGPFDETLLDSCWLAIAATDDDTVNQRVSDAAESRRIFCNV-----VDAPKAASFI 112
>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus
helveticus [TaxId: 1587]}
Length = 197
Score = 38.6 bits (88), Expect = 3e-04
Identities = 10/70 (14%), Positives = 20/70 (28%), Gaps = 13/70 (18%)
Query: 185 HMIMGDTVGIYFIFSASDVLKAKKIRGAGLDVMYPEP-------------LPLDSPLLQL 231
++ + + L + KI G +DV E + L+
Sbjct: 127 VIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIAR 186
Query: 232 DNCVILPHIG 241
N ++ P
Sbjct: 187 PNVLVTPKTA 196
>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate
ligase MurD {Escherichia coli [TaxId: 562]}
Length = 93
Score = 35.8 bits (82), Expect = 7e-04
Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 6/84 (7%)
Query: 40 LQNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNI-----DDLC 94
Q V I+G G GLS ++ + V+ + +R P DK D+
Sbjct: 3 YQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLNDEWL 62
Query: 95 KQSDFIIITSALTPDTHHLINRAR 118
+D I+ + + H ++ A
Sbjct: 63 MAADLIVASPGIALA-HPSLSAAA 85
>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase
(acylating) {Pseudomonas sp. [TaxId: 306]}
Length = 157
Score = 35.0 bits (80), Expect = 0.004
Identities = 26/128 (20%), Positives = 46/128 (35%), Gaps = 15/128 (11%)
Query: 45 VGIVGCGRIGLSVLEKLIPY--KVSKFLYTSRSKKPEADKRGAE------HTNIDDLCKQ 96
V I+G G IG ++ K++ + + R + ++ L K
Sbjct: 7 VAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKL 66
Query: 97 SDF--IIITSALTPDTHHLINRARLESMKPGAILINTSR---GQLVDQEALIDFIADIRV 151
+F I T + H+ N A L KPG LI+ + G ++
Sbjct: 67 PEFADIDFVFDATSASAHVQNEALLRQAKPGIRLIDLTPAAIGPYCVPVVNLEEHLGKL- 125
Query: 152 ISISMVTN 159
+++MVT
Sbjct: 126 -NVNMVTY 132
>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium
lapideum [TaxId: 32060]}
Length = 168
Score = 34.1 bits (78), Expect = 0.008
Identities = 18/108 (16%), Positives = 41/108 (37%), Gaps = 10/108 (9%)
Query: 38 PALQNSTVGIVGCGRIGLSVLEKLIPY--KVSKF-LYTSRSKKPEADKRGAEHTNIDDLC 94
P ++ V I+G G +G + + +V F + R E +
Sbjct: 28 PGVKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSA 87
Query: 95 KQSDF-----IIITSALTP--DTHHLINRARLESMKPGAILINTSRGQ 135
+ ++I + L P L+ + +E M+ G+++++ + Q
Sbjct: 88 EIETAVAEADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVDVAVDQ 135
>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase
{Salmonella typhimurium [TaxId: 90371]}
Length = 161
Score = 33.2 bits (75), Expect = 0.015
Identities = 19/92 (20%), Positives = 34/92 (36%), Gaps = 4/92 (4%)
Query: 45 VGIVGCGRIGLSVLEKLIP--YKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIII 102
VG +G G +G + + L+ Y + + + + +Q D II
Sbjct: 3 VGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIIT 62
Query: 103 TSALTPDTHHLI--NRARLESMKPGAILINTS 132
+P + +E KPG +LI+ S
Sbjct: 63 MLPNSPHVKEVALGENGIIEGAKPGTVLIDMS 94
>d1j5pa4 c.2.1.3 (A:-1-108,A:220-241) Hypothetical protein TM1643
{Thermotoga maritima [TaxId: 2336]}
Length = 132
Score = 31.2 bits (70), Expect = 0.051
Identities = 14/98 (14%), Positives = 27/98 (27%), Gaps = 2/98 (2%)
Query: 41 QNSTVGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFI 100
+ TV I+G G IG ++E K+ + S+ + + +
Sbjct: 1 HHMTVLIIGMGNIGKKLVELGNFEKIYAYDRISKDIPGVVRLDEFQVPSDVSTV--VECA 58
Query: 101 IITSALTPDTHHLINRARLESMKPGAILINTSRGQLVD 138
+ L N + A R +
Sbjct: 59 SPEAVKEYSLQILKNPVNYIIISTSAFADEVFRERFFS 96
>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 172
Score = 31.0 bits (69), Expect = 0.097
Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 2/70 (2%)
Query: 45 VGIVGCGRIGLSVLEKLIPYKVSKF--LYTSRSKKPEADKRGAEHTNIDDLCKQSDFIII 102
V +VG GR G L L + + F L S++ +++D + + +
Sbjct: 10 VVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELGSLDEVRQISLEDALRSQEIDVA 69
Query: 103 TSALTPDTHH 112
+H
Sbjct: 70 YICSESSSHE 79
>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase
(KARI) {Pseudomonas aeruginosa [TaxId: 287]}
Length = 182
Score = 30.2 bits (68), Expect = 0.16
Identities = 23/121 (19%), Positives = 46/121 (38%), Gaps = 9/121 (7%)
Query: 39 ALQNSTVGIVGCGRIG----LSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLC 94
+Q V I+G G G ++ + + V L + + +A+ G + ++
Sbjct: 13 IIQGKKVAIIGYGSQGHAHACNLKDSGVDVTVG--LRSGSATVAKAEAHGLKVADVKTAV 70
Query: 95 KQSDFIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISI 154
+D ++I + L ++K GA L + G + AD+ VI I
Sbjct: 71 AAADVVMILTP-DEFQGRLYKEEIEPNLKKGATLA-FAHG-FSIHYNQVVPRADLDVIMI 127
Query: 155 S 155
+
Sbjct: 128 A 128
>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex
aeolicus [TaxId: 63363]}
Length = 171
Score = 29.6 bits (65), Expect = 0.30
Identities = 19/123 (15%), Positives = 33/123 (26%), Gaps = 5/123 (4%)
Query: 44 TVGIVGCGRIGLSVLEKLIPYKVSKFLY-----TSRSKKPEADKRGAEHTNIDDLCKQSD 98
V IVG G +G S + L +Y K E T +
Sbjct: 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFS 62
Query: 99 FIIITSALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVT 158
+ + T I + + A + + + L + + V +
Sbjct: 63 PDFVMLSSPVRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGGHPIAG 122
Query: 159 NEK 161
EK
Sbjct: 123 TEK 125
>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 162
Score = 28.3 bits (62), Expect = 0.72
Identities = 14/94 (14%), Positives = 34/94 (36%), Gaps = 4/94 (4%)
Query: 43 STVGIVGCGRIGLSVLEKLIP--YKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFI 100
+ +G G +G + L+ Y ++ F + + + D + +D +
Sbjct: 2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVV 61
Query: 101 IITSALTPDTH--HLINRARLESMKPGAILINTS 132
I + +L + L + PG +++ S
Sbjct: 62 ISMLPASQHVEGLYLDDDGLLAHIAPGTLVLECS 95
>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC
{Neisseria meningitidis, serogroup B [TaxId: 487]}
Length = 152
Score = 28.0 bits (61), Expect = 0.84
Identities = 9/117 (7%), Positives = 25/117 (21%)
Query: 45 VGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITS 104
V +G G + +V L+ + +R + + +
Sbjct: 3 VYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPELHSDDVLI 62
Query: 105 ALTPDTHHLINRARLESMKPGAILINTSRGQLVDQEALIDFIADIRVISISMVTNEK 161
+ + + + L +RV+ +
Sbjct: 63 LAVKPQDMEAACKNIRTNGALVLSVAAGLSVGTLSRYLGGTRRIVRVMPNTPGKIGL 119
>d2d00a1 c.149.1.1 (A:6-109) V-type ATP synthase subunit F, AtpF
{Thermus thermophilus [TaxId: 274]}
Length = 104
Score = 27.0 bits (60), Expect = 1.2
Identities = 8/49 (16%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Query: 90 IDDLCKQSDF--IIITSALTPDTHHLINRARLESMKPGAILINTSRGQL 136
++ L ++ + + + AL PD + R P + I +
Sbjct: 33 LETLVERGGYALVAVDEALLPDPERAVERLMRGRDLPVLLPIAGLKEAF 81
>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 178
Score = 27.6 bits (61), Expect = 1.4
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 45 VGIVGCGRIGLSVLEKLI 62
V + G G IG V + +I
Sbjct: 4 VAVNGYGTIGKRVADAII 21
>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 172
Score = 27.2 bits (60), Expect = 1.6
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 45 VGIVGCGRIGLSVLEKLI 62
VG+ G G IG V +
Sbjct: 5 VGVNGYGTIGKRVAYAVT 22
>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId:
9606]}
Length = 426
Score = 27.4 bits (60), Expect = 2.1
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 39 ALQNSTVGIVGCGRIGLSVLEKLI 62
L V ++G G +G +L+ L
Sbjct: 34 LLDTCKVLVIGAGGLGCELLKNLA 57
>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding
protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 529
Score = 27.2 bits (60), Expect = 2.1
Identities = 15/124 (12%), Positives = 32/124 (25%), Gaps = 39/124 (31%)
Query: 39 ALQNSTVGIVGCGRIGLSVLEKLIPYKVSK-----------------FLYTS----RSKK 77
AL+++ V ++ G +L+ L+ + F +++
Sbjct: 22 ALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRA 81
Query: 78 PEADKRGAE-----------------HTNIDDLCKQSDFIIITSALTPDTHHLINRARLE 120
A + E N + ++ T L T +
Sbjct: 82 EAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQ-LPESTSLRLADVLWN 140
Query: 121 SMKP 124
S P
Sbjct: 141 SQIP 144
>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus
[TaxId: 2180]}
Length = 171
Score = 25.7 bits (56), Expect = 4.5
Identities = 6/15 (40%), Positives = 7/15 (46%)
Query: 44 TVGIVGCGRIGLSVL 58
V I G G +G V
Sbjct: 3 AVAINGYGTVGKRVA 17
>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA
{Synechocystis sp. pcc 6803 [TaxId: 1148]}
Length = 165
Score = 25.5 bits (54), Expect = 6.7
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 45 VGIVGCGRIGLSVLEKL 61
+G+VG G IG S+ L
Sbjct: 3 IGVVGLGLIGASLAGDL 19
>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid
dehydrogenase (DAPDH) {Corynebacterium glutamicum
[TaxId: 1718]}
Length = 170
Score = 25.2 bits (54), Expect = 7.4
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 45 VGIVGCGRIGLSVLEKL 61
V IVG G +G SV + +
Sbjct: 6 VAIVGYGNLGRSVEKLI 22
>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC
{Streptococcus pyogenes [TaxId: 1314]}
Length = 152
Score = 25.0 bits (53), Expect = 7.7
Identities = 7/68 (10%), Positives = 21/68 (30%)
Query: 45 VGIVGCGRIGLSVLEKLIPYKVSKFLYTSRSKKPEADKRGAEHTNIDDLCKQSDFIIITS 104
+GI+G G++ ++++ L + S ++ + D + +
Sbjct: 3 IGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVI 62
Query: 105 ALTPDTHH 112
Sbjct: 63 LGIKPQLF 70
>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose
oxidoreductase, N-terminal domain {Zymomonas mobilis
[TaxId: 542]}
Length = 221
Score = 25.4 bits (54), Expect = 8.3
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 45 VGIVGCGRIGLSVLEKLI 62
IVG G+ L+ +
Sbjct: 36 YAIVGLGKYALNQILPGF 53
>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline
dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}
Length = 184
Score = 25.3 bits (54), Expect = 8.5
Identities = 13/108 (12%), Positives = 30/108 (27%), Gaps = 19/108 (17%)
Query: 42 NSTVGIVGCGRIGLSV-----------------LEKLIPYKVSKFLYTSRSKKPEADKRG 84
+ T ++G G G + +++ + +
Sbjct: 1 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPD 60
Query: 85 AEHTNIDDLCKQSDFIIITSALTPDTHHLINRARLESMKPGAILINTS 132
++I K +D I+I + H I + G ++I
Sbjct: 61 LLTSDIGLAVKDADVILI--VVPAIHHASIAANIASYISEGQLIILNP 106
>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Human(Homo sapiens), liver
isoform [TaxId: 9606]}
Length = 169
Score = 24.9 bits (54), Expect = 8.7
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 45 VGIVGCGRIGLSVLEKLI 62
VG+ G GRIG V
Sbjct: 4 VGVNGFGRIGRLVTRAAF 21
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.139 0.417
Gapped
Lambda K H
0.267 0.0435 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,023,343
Number of extensions: 46691
Number of successful extensions: 203
Number of sequences better than 10.0: 1
Number of HSP's gapped: 195
Number of HSP's successfully gapped: 65
Length of query: 274
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 190
Effective length of database: 1,254,276
Effective search space: 238312440
Effective search space used: 238312440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)