BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3244
(569 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8UVY2|BRX1_XENLA Ribosome biogenesis protein BRX1 homolog OS=Xenopus laevis GN=brix1
PE=2 SV=1
Length = 339
Score = 271 bits (694), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 116/179 (64%), Positives = 149/179 (83%)
Query: 96 VNERRWINKQRVLIFASRGISFTDRHLMKNLQNMLPHSRPGTKMERKDTLTVVNEICEMK 155
V+E +W NK+RVLIF+SRGI+F RHLM++L++++PHSR TKM+RKD L VVNE+CEMK
Sbjct: 44 VSEGKWKNKERVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMK 103
Query: 156 NCNKCILFEGRLRRDLYMWFANVHEGPSLKCLVESVFTMGELKLTGNSLKGSRPLLSFDE 215
NCNKCI FE + ++DLYMW +N EGPS K LV+++ T+ ELK++GN LKGSRP+LSFD
Sbjct: 104 NCNKCIYFEAKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDP 163
Query: 216 KFSQEPHYRLMQELLTQIFGTPKDLPKSQPFIDHVISFSILDNRIWFRNYQILSEDGAL 274
F +EP Y L++ELLTQIFGTP+ P+SQPF+DH+ +FSI DNRIWFRNYQI+ ED AL
Sbjct: 164 AFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQIIEEDAAL 222
Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 36/42 (85%)
Query: 385 IFGTPKDLPKSQPFIDHVISFSILDNRIWFRNYQILSEDGAL 426
IFGTP+ P+SQPF+DH+ +FSI DNRIWFRNYQI+ ED AL
Sbjct: 181 IFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQIIEEDAAL 222
>sp|Q3SZZ0|BRX1_BOVIN Ribosome biogenesis protein BRX1 homolog OS=Bos taurus GN=BRIX1
PE=2 SV=1
Length = 353
Score = 261 bits (666), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 112/179 (62%), Positives = 145/179 (81%)
Query: 96 VNERRWINKQRVLIFASRGISFTDRHLMKNLQNMLPHSRPGTKMERKDTLTVVNEICEMK 155
V + +W NK+R+LIF+SRGI+F RHLM++L+ ++PHS+ TKM+RKD L V+NE+CEMK
Sbjct: 51 VCKGKWKNKERILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMDRKDKLFVINEVCEMK 110
Query: 156 NCNKCILFEGRLRRDLYMWFANVHEGPSLKCLVESVFTMGELKLTGNSLKGSRPLLSFDE 215
NCNKCI FE + ++DLYMW +N GPS K LV+++ T+ ELK+TGN LKGSRPLLSFD
Sbjct: 111 NCNKCIYFEAKKKQDLYMWLSNSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDP 170
Query: 216 KFSQEPHYRLMQELLTQIFGTPKDLPKSQPFIDHVISFSILDNRIWFRNYQILSEDGAL 274
F + PHY L++ELL QIF TP+ PKSQPF+DHV +F+ILDNRIWFRN+QI+ ED AL
Sbjct: 171 AFDELPHYALLKELLIQIFSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQIIEEDAAL 229
Score = 76.3 bits (186), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 36/42 (85%)
Query: 385 IFGTPKDLPKSQPFIDHVISFSILDNRIWFRNYQILSEDGAL 426
IF TP+ PKSQPF+DHV +F+ILDNRIWFRN+QI+ ED AL
Sbjct: 188 IFSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQIIEEDAAL 229
>sp|Q8TDN6|BRX1_HUMAN Ribosome biogenesis protein BRX1 homolog OS=Homo sapiens GN=BRIX1
PE=1 SV=2
Length = 353
Score = 260 bits (664), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 112/179 (62%), Positives = 145/179 (81%)
Query: 96 VNERRWINKQRVLIFASRGISFTDRHLMKNLQNMLPHSRPGTKMERKDTLTVVNEICEMK 155
V + +W NK+R+LIF+SRGI+F RHLM++L+ ++PHS+ TKM+RKD L V+NE+CEMK
Sbjct: 51 VCKGKWKNKERILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMDRKDKLFVINEVCEMK 110
Query: 156 NCNKCILFEGRLRRDLYMWFANVHEGPSLKCLVESVFTMGELKLTGNSLKGSRPLLSFDE 215
NCNKCI FE + ++DLYMW +N GPS K LV+++ T+ ELK+TGN LKGSRPLLSFD
Sbjct: 111 NCNKCIYFEAKKKQDLYMWLSNSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDP 170
Query: 216 KFSQEPHYRLMQELLTQIFGTPKDLPKSQPFIDHVISFSILDNRIWFRNYQILSEDGAL 274
F + PHY L++ELL QIF TP+ PKSQPF+DHV +F+ILDNRIWFRN+QI+ ED AL
Sbjct: 171 AFDELPHYALLKELLIQIFSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQIIEEDAAL 229
Score = 76.3 bits (186), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 36/42 (85%)
Query: 385 IFGTPKDLPKSQPFIDHVISFSILDNRIWFRNYQILSEDGAL 426
IF TP+ PKSQPF+DHV +F+ILDNRIWFRN+QI+ ED AL
Sbjct: 188 IFSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQIIEEDAAL 229
>sp|Q4QQT6|BRX1_RAT Ribosome biogenesis protein BRX1 homolog OS=Rattus norvegicus
GN=Brix1 PE=2 SV=1
Length = 352
Score = 258 bits (660), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 111/179 (62%), Positives = 143/179 (79%)
Query: 96 VNERRWINKQRVLIFASRGISFTDRHLMKNLQNMLPHSRPGTKMERKDTLTVVNEICEMK 155
V + +W NK+R+LIF+SRGI+F RHLM++L+ ++PHS+ TKM+RKD L V+NE+CEMK
Sbjct: 50 VCKGKWKNKERILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMDRKDKLFVINEVCEMK 109
Query: 156 NCNKCILFEGRLRRDLYMWFANVHEGPSLKCLVESVFTMGELKLTGNSLKGSRPLLSFDE 215
NCNKCI FE + ++DLYMW +N GPS K LV+++ T+ ELK+TGN LKGSRPLLSFD
Sbjct: 110 NCNKCIYFEAKKKQDLYMWLSNSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDP 169
Query: 216 KFSQEPHYRLMQELLTQIFGTPKDLPKSQPFIDHVISFSILDNRIWFRNYQILSEDGAL 274
F PHY L++E L QIF TP+ PKSQPF+DHV +F+ILDNRIWFRN+QI+ ED AL
Sbjct: 170 AFDDLPHYALLKEFLIQIFSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQIIEEDAAL 228
Score = 76.3 bits (186), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 36/42 (85%)
Query: 385 IFGTPKDLPKSQPFIDHVISFSILDNRIWFRNYQILSEDGAL 426
IF TP+ PKSQPF+DHV +F+ILDNRIWFRN+QI+ ED AL
Sbjct: 187 IFSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQIIEEDAAL 228
>sp|Q9DCA5|BRX1_MOUSE Ribosome biogenesis protein BRX1 homolog OS=Mus musculus GN=Brix1
PE=2 SV=3
Length = 353
Score = 258 bits (659), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 111/179 (62%), Positives = 143/179 (79%)
Query: 96 VNERRWINKQRVLIFASRGISFTDRHLMKNLQNMLPHSRPGTKMERKDTLTVVNEICEMK 155
V + +W NK+R+LIF+SRGI+F RHLM++L+ ++PHS+ TKM+RKD L V+NE+CEMK
Sbjct: 51 VCKGKWKNKERILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMDRKDKLFVINEVCEMK 110
Query: 156 NCNKCILFEGRLRRDLYMWFANVHEGPSLKCLVESVFTMGELKLTGNSLKGSRPLLSFDE 215
NCNKCI FE + ++DLYMW +N GPS K LV+++ T+ ELK+TGN LKGSRPLLSFD
Sbjct: 111 NCNKCIYFEAKKKQDLYMWLSNSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDP 170
Query: 216 KFSQEPHYRLMQELLTQIFGTPKDLPKSQPFIDHVISFSILDNRIWFRNYQILSEDGAL 274
F PHY L++E L QIF TP+ PKSQPF+DHV +F+ILDNRIWFRN+QI+ ED AL
Sbjct: 171 AFDDLPHYALLKEFLIQIFSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQIIEEDAAL 229
Score = 76.3 bits (186), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 36/42 (85%)
Query: 385 IFGTPKDLPKSQPFIDHVISFSILDNRIWFRNYQILSEDGAL 426
IF TP+ PKSQPF+DHV +F+ILDNRIWFRN+QI+ ED AL
Sbjct: 188 IFSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQIIEEDAAL 229
>sp|Q5RAN2|BRX1_PONAB Ribosome biogenesis protein BRX1 homolog OS=Pongo abelii GN=BRIX1
PE=2 SV=1
Length = 353
Score = 258 bits (659), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 111/179 (62%), Positives = 144/179 (80%)
Query: 96 VNERRWINKQRVLIFASRGISFTDRHLMKNLQNMLPHSRPGTKMERKDTLTVVNEICEMK 155
V + +W NK+R+LIF+SRGI+F RHLM++L+ ++PHS+ TKM+RKD L V+NE+CEMK
Sbjct: 51 VCKGKWKNKERILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMDRKDKLFVINEVCEMK 110
Query: 156 NCNKCILFEGRLRRDLYMWFANVHEGPSLKCLVESVFTMGELKLTGNSLKGSRPLLSFDE 215
NCNKCI FE + ++DLYMW +N GPS K LV+++ T+ ELK+TGN LKGSRPLLSFD
Sbjct: 111 NCNKCIYFEAKKKQDLYMWLSNSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDP 170
Query: 216 KFSQEPHYRLMQELLTQIFGTPKDLPKSQPFIDHVISFSILDNRIWFRNYQILSEDGAL 274
F + PHY L++ELL QI TP+ PKSQPF+DHV +F+ILDNRIWFRN+QI+ ED AL
Sbjct: 171 AFDELPHYALLKELLIQILSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQIIEEDAAL 229
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 29/42 (69%), Positives = 35/42 (83%)
Query: 385 IFGTPKDLPKSQPFIDHVISFSILDNRIWFRNYQILSEDGAL 426
I TP+ PKSQPF+DHV +F+ILDNRIWFRN+QI+ ED AL
Sbjct: 188 ILSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQIIEEDAAL 229
>sp|Q9VZE6|BRX1_DROME Ribosome biogenesis protein BRX1 homolog OS=Drosophila melanogaster
GN=CG11583 PE=2 SV=2
Length = 359
Score = 258 bits (658), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 110/177 (62%), Positives = 141/177 (79%), Gaps = 2/177 (1%)
Query: 100 RWINKQRVLIFASRGISFTDRHLMKNLQNMLPHSRPGTKMERKDTLTVVNEICEMKNCNK 159
+W+NKQRVL+F++RGIS DRHLMK+++ ++PH RP +KMER TL+VVNE+CEMK+CNK
Sbjct: 45 KWVNKQRVLVFSARGISHRDRHLMKDIKTLMPHHRPESKMERSKTLSVVNEMCEMKHCNK 104
Query: 160 CILFEGRLRRDLYMWFANVH--EGPSLKCLVESVFTMGELKLTGNSLKGSRPLLSFDEKF 217
+LFEGR +RDLYMW +N GPS K L+E++ TM ELK+TGN L+GSRPLLSFD KF
Sbjct: 105 AMLFEGRRKRDLYMWISNTSGSTGPSAKFLIENIHTMAELKMTGNCLRGSRPLLSFDSKF 164
Query: 218 SQEPHYRLMQELLTQIFGTPKDLPKSQPFIDHVISFSILDNRIWFRNYQILSEDGAL 274
+ PH +L++EL Q + P PKSQPF+DHV +F+ LD RIWFRN+QILSEDG L
Sbjct: 165 DELPHLKLLKELFVQTYSVPNHHPKSQPFVDHVFTFTYLDKRIWFRNFQILSEDGGL 221
Score = 70.5 bits (171), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 27/41 (65%), Positives = 32/41 (78%)
Query: 386 FGTPKDLPKSQPFIDHVISFSILDNRIWFRNYQILSEDGAL 426
+ P PKSQPF+DHV +F+ LD RIWFRN+QILSEDG L
Sbjct: 181 YSVPNHHPKSQPFVDHVFTFTYLDKRIWFRNFQILSEDGGL 221
>sp|P34524|BRX1_CAEEL Ribosome biogenesis protein BRX1 homolog OS=Caenorhabditis elegans
GN=K12H4.3 PE=3 SV=1
Length = 352
Score = 203 bits (517), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 89/195 (45%), Positives = 137/195 (70%), Gaps = 7/195 (3%)
Query: 101 WINKQRVLIFASRGISFTDRHLMKNLQNMLPHSRPGTKMERKDTLTVVNEICEMKNCNKC 160
W N++RVL+ SRG R+LMK+++++LPH++ +K++++ +L V+NEI EMKNC K
Sbjct: 59 WTNRERVLVLCSRGADVRTRYLMKDIKDLLPHAKGDSKLDQQKSLNVLNEIAEMKNCTKV 118
Query: 161 ILFEGRLRRDLYMWFANVHEGPSLKCLVESVFTMGELKLTGNSLKGSRPLLSFDEKFSQE 220
+ FE R R+D Y+W +NV +GPS+K LV +V TM ELK++GN L+ SRP+LSFD+ F ++
Sbjct: 119 MYFESRKRKDTYLWMSNVEKGPSIKFLVHNVHTMKELKMSGNCLRASRPVLSFDDAFDKK 178
Query: 221 PHYRLMQELLTQIFGTPKDLPKSQPFIDHVISFSILD-NRIWFRNYQILSED------GA 273
P +L++ +L Q GTP P+SQPF+DHV +FS+ + ++IWFRN+QI+ E G
Sbjct: 179 PQLKLIKAVLMQTLGTPHHHPRSQPFVDHVFNFSVGEGDKIWFRNFQIVDESLQLQEVGP 238
Query: 274 LFRQQLKRLAGQKYE 288
F ++ RL +E
Sbjct: 239 RFVLEMVRLFAGSFE 253
Score = 57.0 bits (136), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 7/69 (10%)
Query: 379 KAKKQTIFGTPKDLPKSQPFIDHVISFSILD-NRIWFRNYQILSED------GALFRQQL 431
KA GTP P+SQPF+DHV +FS+ + ++IWFRN+QI+ E G F ++
Sbjct: 185 KAVLMQTLGTPHHHPRSQPFVDHVFNFSVGEGDKIWFRNFQIVDESLQLQEVGPRFVLEM 244
Query: 432 KRLAGQKYE 440
RL +E
Sbjct: 245 VRLFAGSFE 253
>sp|Q08235|BRX1_YEAST Ribosome biogenesis protein BRX1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=BRX1 PE=1 SV=2
Length = 291
Score = 199 bits (505), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 84/171 (49%), Positives = 124/171 (72%)
Query: 97 NERRWINKQRVLIFASRGISFTDRHLMKNLQNMLPHSRPGTKMERKDTLTVVNEICEMKN 156
N ++++NKQR L+ +SRG+++ RHL+++L +LPHSR K++ K L +NEI E+ N
Sbjct: 23 NVKQFMNKQRTLLISSRGVNYRHRHLIQDLSGLLPHSRKEPKLDTKKDLQQLNEIAELYN 82
Query: 157 CNKCILFEGRLRRDLYMWFANVHEGPSLKCLVESVFTMGELKLTGNSLKGSRPLLSFDEK 216
CN + FE R +DLY+W + GP++K ++++ TM EL TGN LKGSRP+LSFD++
Sbjct: 83 CNNVLFFEARKHQDLYLWLSKPPNGPTIKFYIQNLHTMDELNFTGNCLKGSRPVLSFDQR 142
Query: 217 FSQEPHYRLMQELLTQIFGTPKDLPKSQPFIDHVISFSILDNRIWFRNYQI 267
F PHY+L++ELL FG P + KS+PFIDHV+SFSI+D++IW R Y+I
Sbjct: 143 FESSPHYQLIKELLVHNFGVPPNARKSKPFIDHVMSFSIVDDKIWVRTYEI 193
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/34 (61%), Positives = 28/34 (82%)
Query: 386 FGTPKDLPKSQPFIDHVISFSILDNRIWFRNYQI 419
FG P + KS+PFIDHV+SFSI+D++IW R Y+I
Sbjct: 160 FGVPPNARKSKPFIDHVMSFSIVDDKIWVRTYEI 193
>sp|Q9HGL6|BRX1_SCHPO Ribosome biogenesis protein brx1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=brx1 PE=3 SV=1
Length = 295
Score = 186 bits (472), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 81/164 (49%), Positives = 117/164 (71%)
Query: 104 KQRVLIFASRGISFTDRHLMKNLQNMLPHSRPGTKMERKDTLTVVNEICEMKNCNKCILF 163
KQ+VL+ +SRG+++ RHL+ +L +M+PHS+ +K++ KD L +NE+ E+ NCN F
Sbjct: 42 KQKVLVLSSRGVTYRQRHLLNDLVSMMPHSKKDSKLDSKDRLYQLNELAELYNCNNIFFF 101
Query: 164 EGRLRRDLYMWFANVHEGPSLKCLVESVFTMGELKLTGNSLKGSRPLLSFDEKFSQEPHY 223
E R R DLY+ A GP++K VE++ TM EL +TGN+LKGSRP+LSFD+ F PH
Sbjct: 102 ESRRREDLYLHIARAPNGPTVKFHVENLHTMDELNMTGNALKGSRPILSFDKTFDTAPHL 161
Query: 224 RLMQELLTQIFGTPKDLPKSQPFIDHVISFSILDNRIWFRNYQI 267
++++ELL Q FG PK +S+PFID V + +I D +IWFRNY+I
Sbjct: 162 KVVKELLQQTFGIPKGARRSKPFIDRVCTLTIADGKIWFRNYEI 205
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 40/90 (44%), Gaps = 23/90 (25%)
Query: 383 QTIFGTPKDLPKSQPFIDHVISFSILDNRIWFRNYQILSEDGALFRQQLKRLAGQKYELK 442
Q FG PK +S+PFID V + +I D +IWFRNY+I
Sbjct: 169 QQTFGIPKGARRSKPFIDRVCTLTIADGKIWFRNYEI----------------------- 205
Query: 443 NEEREKQKQTKEMLQIEPADENDISNILRG 472
E +K K +++I P I NIL G
Sbjct: 206 RENEDKSKDPVTLIEIGPRFVMTIINILEG 235
>sp|Q54JN0|BRX1_DICDI Ribosome biogenesis protein BRX1 homolog OS=Dictyostelium
discoideum GN=bxdc2 PE=3 SV=1
Length = 326
Score = 182 bits (462), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 83/165 (50%), Positives = 115/165 (69%)
Query: 103 NKQRVLIFASRGISFTDRHLMKNLQNMLPHSRPGTKMERKDTLTVVNEICEMKNCNKCIL 162
K+RVL ++RGI RHLM +L +++PHS+ K++ + TL+++NE CEMK+CN IL
Sbjct: 73 TKKRVLFTSTRGIGSKYRHLMADLISLIPHSKKEDKIDDRKTLSLINETCEMKSCNYAIL 132
Query: 163 FEGRLRRDLYMWFANVHEGPSLKCLVESVFTMGELKLTGNSLKGSRPLLSFDEKFSQEPH 222
F+ R D ++W A GP++K + +V T+ EL++TGN LKGSRP L FD+ F E H
Sbjct: 133 FDVRKGTDCFLWMAKTPLGPTVKFHITNVHTLDELQMTGNCLKGSRPFLHFDKSFDSEVH 192
Query: 223 YRLMQELLTQIFGTPKDLPKSQPFIDHVISFSILDNRIWFRNYQI 267
+L++EL+TQI+ TPK KS+PF DHV SF D RIWFRNYQI
Sbjct: 193 LQLIKELITQIYSTPKGHVKSKPFFDHVFSFFYQDGRIWFRNYQI 237
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 25/35 (71%)
Query: 385 IFGTPKDLPKSQPFIDHVISFSILDNRIWFRNYQI 419
I+ TPK KS+PF DHV SF D RIWFRNYQI
Sbjct: 203 IYSTPKGHVKSKPFFDHVFSFFYQDGRIWFRNYQI 237
>sp|Q5HFY8|EBH_STAAC Extracellular matrix-binding protein ebh OS=Staphylococcus aureus
(strain COL) GN=ebh PE=4 SV=1
Length = 10498
Score = 38.5 bits (88), Expect = 0.16, Method: Composition-based stats.
Identities = 65/286 (22%), Positives = 122/286 (42%), Gaps = 48/286 (16%)
Query: 293 EREKQKQTKEMLQIEPADENDISNILQKKKIKEAFKMMKKQKEKAKELSKPGLVMKTKDG 352
++EKQ + QI N I+N + K++I++A + + + K+L K +D
Sbjct: 9632 DKEKQALKDRINQILQQGHNGINNAMTKEEIEQAKAQLAQALQDIKDLVK-----AKEDA 9686
Query: 353 KKINKHKLKRLKENLEQRKKMKDRKKKAKKQTIFGTPKDLPKSQPFIDHVISFSILDNRI 412
K+ +++ L + ++Q + D++K+A K I + L + I++ ++ ++
Sbjct: 9687 KQDVDKQVQALIDEIDQNPNLTDKEKQALKDRI---NQILQQGHNDINNAMTKEAIEQA- 9742
Query: 413 WFRNYQILSEDGALFRQQLKRLAGQKYELKNE-------------------EREKQKQTK 453
E A Q +K L K + KN+ ++EKQ
Sbjct: 9743 --------KERLAQALQDIKDLVKAKEDAKNDIDKRVQALIDEIDQNPNLTDKEKQALKD 9794
Query: 454 EMLQIEPADENDISNILRGDILKKAKKLTAKPIDLKKESDKAETRATLTEKKKIKEAFKM 513
+ QI NDI+N L + +++AK A+ + K+ KA K+ K A K
Sbjct: 9795 RINQILQQGHNDINNALTKEEIEQAKAQLAQALQDIKDLVKA--------KEDAKNAIKA 9846
Query: 514 MKKQKEKAKELSKPGLV--MKTKDGKKINKHKLKRLKENLEQRKKM 557
+ K S P L K K K+I++ + KR +N+E + +
Sbjct: 9847 LANAKRDQIN-SNPDLTPEQKAKALKEIDEAE-KRALQNVENAQTI 9890
>sp|Q2FYJ6|EBH_STAA8 Extracellular matrix-binding protein ebh OS=Staphylococcus aureus
(strain NCTC 8325) GN=ebh PE=1 SV=1
Length = 9535
Score = 38.5 bits (88), Expect = 0.16, Method: Composition-based stats.
Identities = 65/286 (22%), Positives = 122/286 (42%), Gaps = 48/286 (16%)
Query: 293 EREKQKQTKEMLQIEPADENDISNILQKKKIKEAFKMMKKQKEKAKELSKPGLVMKTKDG 352
++EKQ + QI N I+N + K++I++A + + + K+L K +D
Sbjct: 8669 DKEKQALKDRINQILQQGHNGINNAMTKEEIEQAKAQLAQALQDIKDLVK-----AKEDA 8723
Query: 353 KKINKHKLKRLKENLEQRKKMKDRKKKAKKQTIFGTPKDLPKSQPFIDHVISFSILDNRI 412
K+ +++ L + ++Q + D++K+A K I + L + I++ ++ ++
Sbjct: 8724 KQDVDKQVQALIDEIDQNPNLTDKEKQALKDRI---NQILQQGHNDINNAMTKEAIEQA- 8779
Query: 413 WFRNYQILSEDGALFRQQLKRLAGQKYELKNE-------------------EREKQKQTK 453
E A Q +K L K + KN+ ++EKQ
Sbjct: 8780 --------KERLAQALQDIKDLVKAKEDAKNDIDKRVQALIDEIDQNPNLTDKEKQALKD 8831
Query: 454 EMLQIEPADENDISNILRGDILKKAKKLTAKPIDLKKESDKAETRATLTEKKKIKEAFKM 513
+ QI NDI+N L + +++AK A+ + K+ KA K+ K A K
Sbjct: 8832 RINQILQQGHNDINNALTKEEIEQAKAQLAQALQDIKDLVKA--------KEDAKNAIKA 8883
Query: 514 MKKQKEKAKELSKPGLV--MKTKDGKKINKHKLKRLKENLEQRKKM 557
+ K S P L K K K+I++ + KR +N+E + +
Sbjct: 8884 LANAKRDQIN-SNPDLTPEQKAKALKEIDEAE-KRALQNVENAQTI 8927
>sp|A6QGY4|EBHA_STAAE Extracellular matrix-binding protein EbhA OS=Staphylococcus aureus
(strain Newman) GN=ebhA PE=4 SV=1
Length = 3462
Score = 33.5 bits (75), Expect = 4.2, Method: Composition-based stats.
Identities = 50/226 (22%), Positives = 98/226 (43%), Gaps = 36/226 (15%)
Query: 293 EREKQKQTKEMLQIEPADENDISNILQKKKIKEAFKMMKKQKEKAKELSKPGLVMKTKDG 352
++EKQ + QI N I+N + K++I++A + + + K+L K +D
Sbjct: 2596 DKEKQALKDRINQILQQGHNGINNAMTKEEIEQAKAQLAQALQDIKDLVK-----AKEDA 2650
Query: 353 KKINKHKLKRLKENLEQRKKMKDRKKKAKKQTIFGTPKDLPKSQPFIDHVISFSILDNRI 412
K+ +++ L + ++Q + D++K+A K I + L + I++ ++ ++
Sbjct: 2651 KQDVDKQVQALIDEIDQNPNLTDKEKQALKDRI---NQILQQGHNDINNAMTKEAIEQA- 2706
Query: 413 WFRNYQILSEDGALFRQQLKRLAGQKYELKNE-------------------EREKQKQTK 453
E A Q +K L K + KN+ ++EKQ
Sbjct: 2707 --------KERLAQALQDIKDLVKAKEDAKNDIDKRVQALIDEIDQNPNLTDKEKQALKD 2758
Query: 454 EMLQIEPADENDISNILRGDILKKAKKLTAKPIDLKKESDKAETRA 499
+ QI NDI+N L + +++AK A+ + K+ KA+ A
Sbjct: 2759 RINQILQQGHNDINNALTKEEIEQAKAQLAQALQDIKDLVKAKEDA 2804
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.132 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 206,554,536
Number of Sequences: 539616
Number of extensions: 8985355
Number of successful extensions: 72158
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 1877
Number of HSP's that attempted gapping in prelim test: 55319
Number of HSP's gapped (non-prelim): 11444
length of query: 569
length of database: 191,569,459
effective HSP length: 123
effective length of query: 446
effective length of database: 125,196,691
effective search space: 55837724186
effective search space used: 55837724186
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)