Query psy3244
Match_columns 569
No_of_seqs 309 out of 599
Neff 4.2
Searched_HMMs 46136
Date Fri Aug 16 20:01:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3244.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3244hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2971|consensus 100.0 1.3E-70 2.9E-75 542.2 21.8 233 31-319 25-297 (299)
2 COG5154 BRX1 RNA-binding prote 100.0 2E-57 4.3E-62 439.9 20.7 226 91-319 16-283 (283)
3 KOG2971|consensus 100.0 4.7E-52 1E-56 410.7 9.3 131 311-478 93-243 (299)
4 COG5154 BRX1 RNA-binding prote 100.0 1.4E-43 3.1E-48 343.6 2.2 175 267-479 35-230 (283)
5 PF04427 Brix: Brix domain; I 100.0 1.4E-32 3.1E-37 260.0 7.8 157 109-267 1-160 (191)
6 smart00879 Brix Brix domain. T 100.0 6E-29 1.3E-33 231.3 17.4 158 108-269 1-162 (180)
7 KOG2781|consensus 99.9 1.7E-26 3.7E-31 228.8 15.7 159 102-272 80-239 (290)
8 KOG3031|consensus 99.9 1.1E-25 2.4E-30 226.3 8.3 170 100-270 23-201 (307)
9 KOG2963|consensus 99.9 3.4E-23 7.5E-28 213.2 13.8 182 97-280 18-213 (405)
10 KOG2780|consensus 99.8 5.4E-18 1.2E-22 170.4 14.5 160 101-271 93-253 (302)
11 COG5106 RPF2 Uncharacterized c 99.5 8.4E-15 1.8E-19 146.0 6.3 167 101-268 24-206 (316)
12 PRK03972 ribosomal biogenesis 99.5 2.6E-13 5.7E-18 133.5 15.8 130 107-241 2-137 (208)
13 PF04427 Brix: Brix domain; I 99.4 1.6E-14 3.4E-19 137.1 0.3 159 275-469 11-191 (191)
14 COG2136 IMP4 Predicted exosome 99.4 6.7E-12 1.5E-16 122.4 15.2 157 105-270 2-164 (191)
15 smart00879 Brix Brix domain. T 99.2 1.8E-11 3.9E-16 114.2 7.0 131 275-421 12-162 (180)
16 KOG2781|consensus 97.7 2.7E-05 5.8E-10 79.1 4.3 106 344-482 149-271 (290)
17 KOG2963|consensus 97.4 0.00028 6E-09 74.8 6.4 80 344-423 94-201 (405)
18 KOG2780|consensus 96.4 0.0068 1.5E-07 62.7 6.3 77 377-484 212-289 (302)
19 PRK00933 ribosomal biogenesis 94.7 0.18 3.8E-06 49.0 8.9 96 107-211 1-96 (165)
20 KOG3031|consensus 90.2 0.51 1.1E-05 49.5 5.6 80 367-471 147-228 (307)
21 KOG1416|consensus 38.9 19 0.00041 40.4 2.1 48 205-271 378-425 (475)
22 COG5106 RPF2 Uncharacterized c 38.5 1.5E+02 0.0033 31.3 8.2 131 318-475 69-239 (316)
23 PF08869 XisI: XisI protein; 33.1 32 0.00069 31.8 2.2 43 374-416 7-72 (111)
24 PF12513 SUV3_C: Mitochondrial 27.1 27 0.00058 27.2 0.6 13 334-351 11-23 (49)
25 KOG1144|consensus 25.8 1.5E+02 0.0032 36.0 6.3 30 534-564 207-236 (1064)
26 COG5083 SMP2 Uncharacterized p 21.5 60 0.0013 36.8 2.2 37 348-384 449-492 (580)
27 COG2136 IMP4 Predicted exosome 20.4 93 0.002 31.2 3.1 27 54-80 3-29 (191)
No 1
>KOG2971|consensus
Probab=100.00 E-value=1.3e-70 Score=542.15 Aligned_cols=233 Identities=52% Similarity=0.926 Sum_probs=213.7
Q ss_pred cCCCCCCC---CCchhhhhcccccceeEEEEeecCCchhhhHHHHHHhhhCCCCCCCCCcccccccccccccccccCceE
Q psy3244 31 ELPPPSRN---SDEPIAKKRKWINKQRVLIFASRGISFTDRHLMKNLQNMLPHSRPGTKMERKDTLTVVNERRWINKQRV 107 (569)
Q Consensus 31 ~~~~~~~~---s~~~~~~~~~~~n~~rvl~~~~rg~~~~~rhlm~d~~~l~ph~k~~~k~~rkd~~~~~~~~~~eNkkKv 107 (569)
+.-||+|+ ||+..+++++|+|+||||||||||||||+||||+|+..||||++.++|++|++
T Consensus 25 ~~~~pqr~~~~~~~~~pk~~~w~NK~rvlv~ssRgis~R~RhLm~di~~Llph~k~dsk~d~~k---------------- 88 (299)
T KOG2971|consen 25 APEPPQRNLEESDDFVPKKEKWKNKERVLVLSSRGISFRTRHLMKDISSLLPHSKKDSKLDRKK---------------- 88 (299)
T ss_pred CCCCCcccccccccccccccccccceeEEEEecCCchHHHHHHHHHHHHhcccccccchhhhcc----------------
Confidence 34455885 78888999999999999999999999999999999999999999987665432
Q ss_pred EEEecCCCCHhHHHHHHHHHHhCCCCCCCCccccCCccchHHHHHhhcCCCeEEEEEecCCCCCeEEEeecCCCCeeEEE
Q psy3244 108 LIFASRGISFTDRHLMKNLQNMLPHSRPGTKMERKDTLTVVNEICEMKNCNKCILFEGRLRRDLYMWFANVHEGPSLKCL 187 (569)
Q Consensus 108 LIl~SRgvS~r~RhLmkDL~~LmPhskk~~K~drkn~l~~Lnelae~~~cn~~LffE~rKKrplyLwisr~P~GPTikF~ 187 (569)
.+.+|||+|++++||+|+|||+|+++|+|||||++|+||||+|+
T Consensus 89 ------------------------------------~l~~lnel~elkncn~~lfFesrkr~DlYlWm~~~p~GpSvkFl 132 (299)
T KOG2971|consen 89 ------------------------------------KLGVLNELAELKNCNSCLFFESRKRKDLYLWMSNSPNGPSVKFL 132 (299)
T ss_pred ------------------------------------hHHHHHHHHHHhcCCeEEEEEeeccCceeEEEecCCCCCceEEe
Confidence 35789999999999999999999999999999999999999999
Q ss_pred eeeeeehhhhcccCCCCCCCCCeEEecCCCCCchhhHHHHHHHhhhcCCCCCCCCcCCCCcEEEEEEEeCCEEEEeeccc
Q psy3244 188 VESVFTMGELKLTGNSLKGSRPLLSFDEKFSQEPHYRLMQELLTQIFGTPKDLPKSQPFIDHVISFSILDNRIWFRNYQI 267 (569)
Q Consensus 188 VeN~~Tm~ELk~tGN~lkgSrPlLvFd~~Fds~phlkLlKeLL~~~F~~P~~~~kskpfiDhVisFs~~DdkIwFR~YqI 267 (569)
|+|+|||+|+++||||++||||+|+||.+||+.|||+++|+||+|+|++|.+|++|+||+|||++|+|+||+||||||||
T Consensus 133 v~n~hTM~ElkmtgN~lkgsrplLsFd~~Fd~~pHlkl~Kell~q~fgiP~~hrkSkpf~Dhvf~Fsi~D~~IWfRnyqI 212 (299)
T KOG2971|consen 133 VHNVHTMAELKMTGNCLKGSRPLLSFDKAFDELPHLKLLKELLEQIFGIPKHHRKSKPFVDHVFTFSILDGKIWFRNYQI 212 (299)
T ss_pred hhhhhhHHHhCCccccccCCcceeecccccccchHHHHHHHHHHHHcCCCCCCcccCCccceEEEEEEecCeEEEEEeEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -ccCCchH-----------------------------------HHHHHHHHhchhhhHHHHHHHHHHHhhhhhccCCCCC
Q psy3244 268 -LSEDGAL-----------------------------------FRQQLKRLAGQKYELKNEEREKQKQTKEMLQIEPADE 311 (569)
Q Consensus 268 -~~srG~L-----------------------------------vRalLKr~kA~KY~~RkEqK~drK~rK~e~~~~~lp~ 311 (569)
..+|..| +|+.+|+++|++| .|++++.+++.+..++ .+++
T Consensus 213 ~~~ed~~L~EiGPRfvl~~ikif~gsFgG~~lYenp~yvspn~~r~~~k~~~a~k~-~k~ka~~~rkir~~~~---~l~~ 288 (299)
T KOG2971|consen 213 SEEEDKTLIEIGPRFVLNVIKIFEGSFGGPTLYENPKYVSPNMIRAVIKKQAAGKY-QKVKAKTERKIRALEN---VLEE 288 (299)
T ss_pred ccccCcceeeeccHHHHhHHHHHhccCCCceeecCccccCHHHHHHHHHHHHHHHH-HHHHHHHHhhHHHhcC---CCCC
Confidence 4555322 9999999999999 9999999999999877 7888
Q ss_pred Cc-hhhhhc
Q psy3244 312 ND-ISNILQ 319 (569)
Q Consensus 312 DE-LddVF~ 319 (569)
|| ++++|.
T Consensus 289 d~vf~~~~~ 297 (299)
T KOG2971|consen 289 DPVFADMAK 297 (299)
T ss_pred Cchhhhhhc
Confidence 98 555554
No 2
>COG5154 BRX1 RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2e-57 Score=439.90 Aligned_cols=226 Identities=40% Similarity=0.711 Sum_probs=212.0
Q ss_pred cccccccc-cccccCceEEEEecCCCCHhHHHHHHHHHHhCCCCCCCCccccCCccchHHHHHhhcCCCeEEEEEecCCC
Q psy3244 91 DTLTVVNE-RRWINKQRVLIFASRGISFTDRHLMKNLQNMLPHSRPGTKMERKDTLTVVNEICEMKNCNKCILFEGRLRR 169 (569)
Q Consensus 91 d~~~~~~~-~~~eNkkKvLIl~SRgvS~r~RhLmkDL~~LmPhskk~~K~drkn~l~~Lnelae~~~cn~~LffE~rKKr 169 (569)
|..++.-+ ..+.|+|++||++|||+|+++||||+||..|+||++++.|+|.+.++.+|+++|+.++|++++|||+|++.
T Consensus 16 ~~e~~qgn~~~f~~kq~~lilSsRGvsyr~RHL~~Dls~l~phskke~KlD~kk~l~qLnelaelynCnn~lFFesrkr~ 95 (283)
T COG5154 16 DEEYVQGNSAGFVPKQTSLILSSRGVSYRIRHLMKDLSRLVPHSKKEQKLDMKKNLGQLNELAELYNCNNMLFFESRKRS 95 (283)
T ss_pred hhHHhccchhcccccceEEEEecCCchHHHHHHHHHHHHhCcccccccccchhhhHHHHHHHHHHhcCCceEEEeecccc
Confidence 34444433 46889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEeecCCCCeeEEEeeeeeehhhhcccCCCCCCCCCeEEecCCCCCchhhHHHHHHHhhhcCCCCCCCCcCCCCcE
Q psy3244 170 DLYMWFANVHEGPSLKCLVESVFTMGELKLTGNSLKGSRPLLSFDEKFSQEPHYRLMQELLTQIFGTPKDLPKSQPFIDH 249 (569)
Q Consensus 170 plyLwisr~P~GPTikF~VeN~~Tm~ELk~tGN~lkgSrPlLvFd~~Fds~phlkLlKeLL~~~F~~P~~~~kskpfiDh 249 (569)
|+|||+++.||||||+|+|+|.|||+|+++||||++||+|+|+||..|++.|||+++|++|.|+|+.|.+.++|+||+||
T Consensus 96 Dlyl~~ar~pnGptvkF~~~NlhTMdelNftgN~lKgsrpvLsFdk~Fe~~pHlk~~Kell~h~F~ip~~arrSkpfiD~ 175 (283)
T COG5154 96 DLYLMGARIPNGPTVKFRMHNLHTMDELNFTGNSLKGSRPVLSFDKEFEDIPHLKYAKELLEHIFGIPKGARRSKPFIDK 175 (283)
T ss_pred cceeeeccCCCCCeEEEEEeccchHhhcCCccccccCCcceEeeccccccchHHHHHHHHHHHhccCCCcccccccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCEEEEeecccccC--C----------ch---H--------------------------HHHHHHHHhchhhh
Q psy3244 250 VISFSILDNRIWFRNYQILSE--D----------GA---L--------------------------FRQQLKRLAGQKYE 288 (569)
Q Consensus 250 VisFs~~DdkIwFR~YqI~~s--r----------G~---L--------------------------vRalLKr~kA~KY~ 288 (569)
|++|++.||+||||+|.|.-+ | |. + +|+++|+++|..|.
T Consensus 176 v~~f~i~DgkIWvR~YeI~re~ed~~~dv~L~EIGPRfVmtvi~iLEgsFgGp~iYkn~~~vs~~~vra~ir~qaae~~~ 255 (283)
T COG5154 176 VLCFFILDGKIWVRCYEIGRENEDKSKDVKLEEIGPRFVMTVIKILEGSFGGPAIYKNETFVSSTMVRAAIRNQAAENLF 255 (283)
T ss_pred eEEEEEecCeEEEEEEeeccccccccccceeeeeccHHHHHHHHHHHhccCCceeeecccccchHHHHHHHHHHHHHHHH
Confidence 999999999999999999522 1 10 0 99999999999999
Q ss_pred HHHHHHHHHHHhhhhhccCCCCCCchhhhhc
Q psy3244 289 LKNEEREKQKQTKEMLQIEPADENDISNILQ 319 (569)
Q Consensus 289 ~RkEqK~drK~rK~e~~~~~lp~DELddVF~ 319 (569)
+|+|+..+|+.+..++ .+|.|||++||.
T Consensus 256 ~R~es~~er~vr~~~n---vi~~dpl~n~f~ 283 (283)
T COG5154 256 ARKESNLERQVRAQQN---VIPEDPLDNVFA 283 (283)
T ss_pred hhhhHHHHHHHHHhcC---CCCCCchhhhcC
Confidence 9999999999999887 899999999984
No 3
>KOG2971|consensus
Probab=100.00 E-value=4.7e-52 Score=410.68 Aligned_cols=131 Identities=34% Similarity=0.538 Sum_probs=120.0
Q ss_pred CCchhhhhcchhHHHHHHHHHHhhhhhhhccCCCccccCCCCcee-----eccchhhhhhh----------hhccccc--
Q psy3244 311 ENDISNILQKKKIKEAFKMMKKQKEKAKELSKPGLVMKTKDGKKI-----NKHKLKRLKEN----------LEQRKKM-- 373 (569)
Q Consensus 311 ~DELddVF~~n~~~e~f~e~kk~~~~~lw~~~~~~~~k~p~gps~-----n~ht~~~l~~~----------~~~~~~f-- 373 (569)
.+||+++.+||+|+ |||.||++|+|+|++ ++|||||| |+|||+||+|+ +.|++.|
T Consensus 93 lnel~elkncn~~l--fFesrkr~DlYlWm~------~~p~GpSvkFlv~n~hTM~ElkmtgN~lkgsrplLsFd~~Fd~ 164 (299)
T KOG2971|consen 93 LNELAELKNCNSCL--FFESRKRKDLYLWMS------NSPNGPSVKFLVHNVHTMAELKMTGNCLKGSRPLLSFDKAFDE 164 (299)
T ss_pred HHHHHHHhcCCeEE--EEEeeccCceeEEEe------cCCCCCceEEehhhhhhHHHhCCccccccCCcceeeccccccc
Confidence 38899999999999 999999999999997 99999999 99999999993 4556556
Q ss_pred --hhHHHHHHHHhhhCCCCCCCCCCCcceeEEEEEEecCeEEEEEeeee-cCcchhHHHHHHHHhhhcchhhHHHHHHhh
Q psy3244 374 --KDRKKKAKKQTIFGTPKDLPKSQPFIDHVISFSILDNRIWFRNYQIL-SEDGALFRQQLKRLAGQKYELKNEEREKQK 450 (569)
Q Consensus 374 --~~~like~~~~~f~~p~~~~kskpf~Dhv~~f~~~d~~iw~r~yqi~-~~~~~~~~~~~~~~~~~k~~~~~~~k~~~~ 450 (569)
||.|+||||.|+||||++||||+||+|||++|+|+||+||||||||+ ++++.
T Consensus 165 ~pHlkl~Kell~q~fgiP~~hrkSkpf~Dhvf~Fsi~D~~IWfRnyqI~~~ed~~------------------------- 219 (299)
T KOG2971|consen 165 LPHLKLLKELLEQIFGIPKHHRKSKPFVDHVFTFSILDGKIWFRNYQISEEEDKT------------------------- 219 (299)
T ss_pred chHHHHHHHHHHHHcCCCCCCcccCCccceEEEEEEecCeEEEEEeEeccccCcc-------------------------
Confidence 69999999999999999999999999999999999999999999996 44422
Q ss_pred hcccccccCCcCCCcccccccCChHHHH
Q psy3244 451 QTKEMLQIEPADENDISNILRGDILKKA 478 (569)
Q Consensus 451 ~~~~lieigp~~~~~~~~i~~g~~~~ka 478 (569)
|+|||||||+++|.||+|||+-++
T Consensus 220 ----L~EiGPRfvl~~ikif~gsFgG~~ 243 (299)
T KOG2971|consen 220 ----LIEIGPRFVLNVIKIFEGSFGGPT 243 (299)
T ss_pred ----eeeeccHHHHhHHHHHhccCCCce
Confidence 999999999999999999999755
No 4
>COG5154 BRX1 RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-43 Score=343.62 Aligned_cols=175 Identities=29% Similarity=0.408 Sum_probs=154.5
Q ss_pred cccCCchH--HHHHHHHHhchhhhHHHHHHHHHHHhhhhhccCCCCCCchhhhhcchhHHHHHHHHHHhhhhhhhccCCC
Q psy3244 267 ILSEDGAL--FRQQLKRLAGQKYELKNEEREKQKQTKEMLQIEPADENDISNILQKKKIKEAFKMMKKQKEKAKELSKPG 344 (569)
Q Consensus 267 I~~srG~L--vRalLKr~kA~KY~~RkEqK~drK~rK~e~~~~~lp~DELddVF~~n~~~e~f~e~kk~~~~~lw~~~~~ 344 (569)
|..+||+. +||++++.....++.|+|+|.+.+.+..++ +||+++++||+++ |||.+|++|+|+|++
T Consensus 35 ilSsRGvsyr~RHL~~Dls~l~phskke~KlD~kk~l~qL-------nelaelynCnn~l--FFesrkr~Dlyl~~a--- 102 (283)
T COG5154 35 ILSSRGVSYRIRHLMKDLSRLVPHSKKEQKLDMKKNLGQL-------NELAELYNCNNML--FFESRKRSDLYLMGA--- 102 (283)
T ss_pred EEecCCchHHHHHHHHHHHHhCcccccccccchhhhHHHH-------HHHHHHhcCCceE--EEeecccccceeeec---
Confidence 45678876 999999999999999999999999888766 9999999999999 999999999999886
Q ss_pred ccccCCCCcee-----eccchhhhhhh----------hhccccc----hhHHHHHHHHhhhCCCCCCCCCCCcceeEEEE
Q psy3244 345 LVMKTKDGKKI-----NKHKLKRLKEN----------LEQRKKM----KDRKKKAKKQTIFGTPKDLPKSQPFIDHVISF 405 (569)
Q Consensus 345 ~~~k~p~gps~-----n~ht~~~l~~~----------~~~~~~f----~~~like~~~~~f~~p~~~~kskpf~Dhv~~f 405 (569)
++|||||| |+||||||+|+ +.|++.| |++++||+|.|+||+|+++++|+||+|||++|
T Consensus 103 ---r~pnGptvkF~~~NlhTMdelNftgN~lKgsrpvLsFdk~Fe~~pHlk~~Kell~h~F~ip~~arrSkpfiD~v~~f 179 (283)
T COG5154 103 ---RIPNGPTVKFRMHNLHTMDELNFTGNSLKGSRPVLSFDKEFEDIPHLKYAKELLEHIFGIPKGARRSKPFIDKVLCF 179 (283)
T ss_pred ---cCCCCCeEEEEEeccchHhhcCCccccccCCcceEeeccccccchHHHHHHHHHHHhccCCCcccccccchhheEEE
Confidence 99999999 99999999993 4466566 69999999999999999999999999999999
Q ss_pred EEecCeEEEEEeeeecCcchhHHHHHHHHhhhcchhhHHHHHHhhhcccccccCCcCCCcccccccCChHHHHH
Q psy3244 406 SILDNRIWFRNYQILSEDGALFRQQLKRLAGQKYELKNEEREKQKQTKEMLQIEPADENDISNILRGDILKKAK 479 (569)
Q Consensus 406 ~~~d~~iw~r~yqi~~~~~~~~~~~~~~~~~~k~~~~~~~k~~~~~~~~lieigp~~~~~~~~i~~g~~~~ka~ 479 (569)
+|+||+||+|+|+|.-+ |.++ ...-.|+|||||||+++|.|+||+||-.|.
T Consensus 180 ~i~DgkIWvR~YeI~re----------------~ed~-------~~dv~L~EIGPRfVmtvi~iLEgsFgGp~i 230 (283)
T COG5154 180 FILDGKIWVRCYEIGRE----------------NEDK-------SKDVKLEEIGPRFVMTVIKILEGSFGGPAI 230 (283)
T ss_pred EEecCeEEEEEEeeccc----------------cccc-------cccceeeeeccHHHHHHHHHHHhccCCcee
Confidence 99999999999999721 1111 111348999999999999999999998664
No 5
>PF04427 Brix: Brix domain; InterPro: IPR007109 The Brix domain is found in a number of eukaryotic proteins including some from Saccharomyces cerevisiae and Homo sapiens, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins. There are six (one archaean and five eukaryotic) protein families which have a similar domain architecture with a central globular Brix domain. They have an optional N- and obligatory C-terminal segments, which both have charged low-complexity regions []. Proteins from the Imp4/Brix superfamily appear to be involved in ribosomal RNA processing, which essential for the functioning of all cells. The N- and C-terminal halves of a member of the superfamily, Mil, show significant structural similarity to one another. This suggests an origin by means of an ancestral duplication. Both halves have the same fold as the anticodon-binding domain of class IIa aminoacyl-tRNA synthetases, with greater conservation seen in the N-terminal half. Structural evidence suggests that the Imp4/Brix superfamily proteins could bind single-stranded segments of RNA along a concave surface formed by the N-terminal half of their beta-sheet and a central alpha-helix [].; PDB: 2CXH_A.
Probab=99.97 E-value=1.4e-32 Score=259.98 Aligned_cols=157 Identities=34% Similarity=0.564 Sum_probs=77.8
Q ss_pred EEecCCCCHhHHHHHHHHHHhC-CCCCCCCccccCCccchHHHHHhhcCCCeEEEEEecCCCCCeEEEeecCCCCeeEEE
Q psy3244 109 IFASRGISFTDRHLMKNLQNML-PHSRPGTKMERKDTLTVVNEICEMKNCNKCILFEGRLRRDLYMWFANVHEGPSLKCL 187 (569)
Q Consensus 109 Il~SRgvS~r~RhLmkDL~~Lm-Phskk~~K~drkn~l~~Lnelae~~~cn~~LffE~rKKrplyLwisr~P~GPTikF~ 187 (569)
|++||++|.++++|++||+.++ ||+....+.+ .+.+.++.++|..++|++++++++++++|+||||+++|+|||++|+
T Consensus 1 i~ts~~~s~~~~~l~~DL~~l~~p~s~~~~r~~-~~~l~~~~~~~~~~~~~~l~~~~~~~k~p~~L~i~r~~~gptl~f~ 79 (191)
T PF04427_consen 1 ITTSRKPSKRLRQLMKDLRSLFPPNSKKLNRKK-KNSLKDLLEFAKQKNCTSLFVFGEHKKNPNNLWIGRLPNGPTLEFS 79 (191)
T ss_dssp -EESSS--HHHHHHHHHHHTTS-TTEEE---TT----HHHHHHHHHHTTEEEEEEEEEETTEEEEEEEEE-SS--EEEEE
T ss_pred cCCCCCCCHHHHHHHHHHHHHcCCCeEEEeCCC-CCchHHHHHHHHHCCCCEEEEEEEeCCCcceEEEEecCCCCCEEEE
Confidence 6899999999999999999999 9998665442 3367899999999999999999988889999999999999999999
Q ss_pred eeeeeehhhhcccCCCCCCCCCeEEecCC-CCCchhhHHHHHHHhhhcCCCCCCCCcCCCCcEEEEEEEeCCE-EEEeec
Q psy3244 188 VESVFTMGELKLTGNSLKGSRPLLSFDEK-FSQEPHYRLMQELLTQIFGTPKDLPKSQPFIDHVISFSILDNR-IWFRNY 265 (569)
Q Consensus 188 VeN~~Tm~ELk~tGN~lkgSrPlLvFd~~-Fds~phlkLlKeLL~~~F~~P~~~~kskpfiDhVisFs~~Ddk-IwFR~Y 265 (569)
|+||++++|++..+....|++|+|+|+|. |+.+++++++++||+++|+++.++....+++|||++|++.+|. ||||||
T Consensus 80 I~~~~~~~~~~~~~~~~~~~~P~lif~g~~~~~~~~~~~ik~~l~~lF~~~~~~~~~~~~~~rvi~f~~~~d~~I~fR~Y 159 (191)
T PF04427_consen 80 IENYKLMKDIKSSSKRPKGSRPLLIFNGFFFELDPELKLIKELLQDLFPGPNVDSIPLPGIDRVISFSNQRDFVIFFRHY 159 (191)
T ss_dssp EEEEE-HHHHT-------S---EEEEE-----------------------------------------------------
T ss_pred EEeEEEhhHhcccccCCCCCCeEEEEEecccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999998765555599999999993 3446999999999999999999999999999999999999888 999999
Q ss_pred cc
Q psy3244 266 QI 267 (569)
Q Consensus 266 qI 267 (569)
|
T Consensus 160 -i 160 (191)
T PF04427_consen 160 -I 160 (191)
T ss_dssp --
T ss_pred -c
Confidence 7
No 6
>smart00879 Brix Brix domain. The Brix domain is found in a number of eukaryotic proteins including SSF proteins from yeast and humans, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins.
Probab=99.96 E-value=6e-29 Score=231.32 Aligned_cols=158 Identities=36% Similarity=0.513 Sum_probs=139.5
Q ss_pred EEEecCCCCHhHHHHHHHHHHhCCCCCCCCccccCCccchHHHHHhhc-CCCeEEEEEec-CCCCCeEEEeecCCCCeeE
Q psy3244 108 LIFASRGISFTDRHLMKNLQNMLPHSRPGTKMERKDTLTVVNEICEMK-NCNKCILFEGR-LRRDLYMWFANVHEGPSLK 185 (569)
Q Consensus 108 LIl~SRgvS~r~RhLmkDL~~LmPhskk~~K~drkn~l~~Lnelae~~-~cn~~LffE~r-KKrplyLwisr~P~GPTik 185 (569)
||++||++|.++++|++||+.++|++....+. ++.+..+.++|... +|++++++|.+ +++|++||++++|+||++.
T Consensus 1 lit~sr~~s~~~r~~~~dL~~~~~~~~~~~r~--~~~~~~~~e~~~~~~~~~~i~v~e~~~k~~p~~L~i~~~~~gp~l~ 78 (180)
T smart00879 1 LITTSRKPSKRTRQLAKDLRRLFPPSTKINRG--KNKLNELLEFASEKGNTDLLVVFESSSKGRPLNLTIYRLPNGPTLD 78 (180)
T ss_pred CEEcCCCCCHHHHHHHHHHHHHCCCcEeeccc--CccHHHHHHHHHHcCCccEEEEecccCCCCCceEEEEECCCCCcEE
Confidence 68999999999999999999999887654433 23566677777666 89999999987 7789999999999999999
Q ss_pred EEeeeeeehhhhcc--cCCCCCCCCCeEEecCCCCCchhhHHHHHHHhhhcCCCCCCCCcCCCCcEEEEEEEeCCEEEEe
Q psy3244 186 CLVESVFTMGELKL--TGNSLKGSRPLLSFDEKFSQEPHYRLMQELLTQIFGTPKDLPKSQPFIDHVISFSILDNRIWFR 263 (569)
Q Consensus 186 F~VeN~~Tm~ELk~--tGN~lkgSrPlLvFd~~Fds~phlkLlKeLL~~~F~~P~~~~kskpfiDhVisFs~~DdkIwFR 263 (569)
|.|.+|.++.|+.. .+||..+++|+|+|+| |....+ .++++||+++|+.+..+.++++++|||++|++.+|.||||
T Consensus 79 f~i~~v~~~~~~~~~~~~~~~~~~~P~li~~~-~~~~~~-~~~k~~l~~~F~~~~~~~~~~~~~~rvi~f~~~~~~I~~R 156 (180)
T smart00879 79 FKILNVSLRKELKGFKTGNCLTGSRPLLIFNN-FFTELG-KLIKELFQDLFPGPPEHKKSLPGLRRVVTFSNQDDYIFFR 156 (180)
T ss_pred EEEECcccHhhhhhhhcCCCcCCCccEEEECC-CCCchH-HHHHHHHHHHCCCCCccccccCCCCEEEEEEecCCEEEEE
Confidence 99999999999986 6899999999999998 544444 7899999999999999999999999999999999999999
Q ss_pred eccccc
Q psy3244 264 NYQILS 269 (569)
Q Consensus 264 ~YqI~~ 269 (569)
||+|..
T Consensus 157 ~y~i~~ 162 (180)
T smart00879 157 HYRIKF 162 (180)
T ss_pred EEEEEc
Confidence 999974
No 7
>KOG2781|consensus
Probab=99.94 E-value=1.7e-26 Score=228.78 Aligned_cols=159 Identities=19% Similarity=0.332 Sum_probs=147.0
Q ss_pred ccCceEEEEecCCCCHhHHHHHHHHHHhCCCCCCCCccccCC-ccchHHHHHhhcCCCeEEEEEecCCCCCeEEEeecCC
Q psy3244 102 INKQRVLIFASRGISFTDRHLMKNLQNMLPHSRPGTKMERKD-TLTVVNEICEMKNCNKCILFEGRLRRDLYMWFANVHE 180 (569)
Q Consensus 102 eNkkKvLIl~SRgvS~r~RhLmkDL~~LmPhskk~~K~drkn-~l~~Lnelae~~~cn~~LffE~rKKrplyLwisr~P~ 180 (569)
+-.++|||++||.+|+++.+|+++|+.++||+. ++++++ .+..|.+.|..+|++.+|++..+++.|..|.+|++|.
T Consensus 80 ~~dPKimvTTSR~PSsrL~~FaKelkLvfPNaq---r~nRG~~~~~~lv~a~ra~~~Td~iivHEhRG~PdgL~vshlPf 156 (290)
T KOG2781|consen 80 EEDPKIMVTTSRDPSSRLKMFAKELKLVFPNAQ---RLNRGNYVVGELVDAARANGVTDLIIVHEHRGIPDGLVVSHLPF 156 (290)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHhheEeccChh---hhcccceeHHHHHHHHHHCCCceEEEEeccCCCCCceEEEecCC
Confidence 445999999999999999999999999999997 577887 6789999999999999887777777899999999999
Q ss_pred CCeeEEEeeeeeehhhhcccCCCCCCCCCeEEecCCCCCchhhHHHHHHHhhhcCCCCCCCCcCCCCcEEEEEEEeCCEE
Q psy3244 181 GPSLKCLVESVFTMGELKLTGNSLKGSRPLLSFDEKFSQEPHYRLMQELLTQIFGTPKDLPKSQPFIDHVISFSILDNRI 260 (569)
Q Consensus 181 GPTikF~VeN~~Tm~ELk~tGN~lkgSrPlLvFd~~Fds~phlkLlKeLL~~~F~~P~~~~kskpfiDhVisFs~~DdkI 260 (569)
|||+.|.+.||.+.+|+..+|+ ++..+|+|+||+ |++..+.+ ++++|.++||+|..+.+ |||+|.+.+|.|
T Consensus 157 GPTa~Fsl~nvVmRhdip~~G~-msE~~phlIfdN-f~t~lG~R-v~~iLkhLFP~pk~ds~------Rvvtf~N~~DyI 227 (290)
T KOG2781|consen 157 GPTAFFSLHNVVMRHDIPDIGT-MSEQKPHLIFDN-FTTKLGKR-VKTILKHLFPVPKDDSK------RVVTFANRNDYI 227 (290)
T ss_pred CCceEeeeeeeeeccccccccc-ccccCceEEecc-ccchHHHH-HHHHHHHhCCCCcCCcc------cEEEEecCCceE
Confidence 9999999999999999999898 668899999998 99999988 68899999999999987 999999999999
Q ss_pred EEeecccccCCc
Q psy3244 261 WFRNYQILSEDG 272 (569)
Q Consensus 261 wFR~YqI~~srG 272 (569)
.||||+|.-.+|
T Consensus 228 sFRhhvy~~~~~ 239 (290)
T KOG2781|consen 228 SFRHHVYKKTDG 239 (290)
T ss_pred EEEEEEEecCCC
Confidence 999999987774
No 8
>KOG3031|consensus
Probab=99.92 E-value=1.1e-25 Score=226.28 Aligned_cols=170 Identities=18% Similarity=0.265 Sum_probs=155.2
Q ss_pred ccccCceEEEEecCCCCHhHHHHHHHHHHhC-CCCCCCCccccCC---ccchHHHHHhhcCCCeEEEEEecCCCCCeEEE
Q psy3244 100 RWINKQRVLIFASRGISFTDRHLMKNLQNML-PHSRPGTKMERKD---TLTVVNEICEMKNCNKCILFEGRLRRDLYMWF 175 (569)
Q Consensus 100 ~~eNkkKvLIl~SRgvS~r~RhLmkDL~~Lm-Phskk~~K~drkn---~l~~Lnelae~~~cn~~LffE~rKKrplyLwi 175 (569)
-.+|...+|++.+..++..+.++|.||+.|. |.+...++.|... +.+.|+++++.++|+.++++++++++|++|++
T Consensus 23 lve~~k~alf~~g~~~~~tl~~vm~dl~alKKp~~i~~~rkN~i~pFEd~ssleffseK~D~slfv~gs~sKKrp~nLv~ 102 (307)
T KOG3031|consen 23 LVENHKDALFLPGMKTNKTLLDVMKDLYALKKPLEIRYNRKNNIHPFEDPSSLEFFSEKNDCSLFVLGSHSKKRPNNLVI 102 (307)
T ss_pred hchhhhhhhccCchhhchHHHHHHHHHHHhccCceeeeccCCCcccCCCCchHHHHhhhhhhhhhhhccccccCCCceEE
Confidence 3688899999999999999999999999997 9997544443332 24688999999999999999999999999999
Q ss_pred eecCCC---CeeEEEeeeeeehhhhcccCCCCCCCCCeEEecC-CCCCchhhHHHHHHHhhhcCCCCCCCCcCCCCcEEE
Q psy3244 176 ANVHEG---PSLKCLVESVFTMGELKLTGNSLKGSRPLLSFDE-KFSQEPHYRLMQELLTQIFGTPKDLPKSQPFIDHVI 251 (569)
Q Consensus 176 sr~P~G---PTikF~VeN~~Tm~ELk~tGN~lkgSrPlLvFd~-~Fds~phlkLlKeLL~~~F~~P~~~~kskpfiDhVi 251 (569)
||++++ +||+|+|+||.+..||+.++ |..|++|+|+|.| .|++.+.|+.|++||+|+|++|.++...+.+++||+
T Consensus 103 gR~fd~~vlDMiElgI~~ykslsdF~~~k-~~~gtKP~l~f~G~~f~~~~~~krlknL~vDfFrge~vd~v~l~Gl~~v~ 181 (307)
T KOG3031|consen 103 GRTFDYEVLDMIELGIENYKSLSDFKAAK-ITEGTKPMLIFQGAVFDQHPEYKRLKNLFVDFFRGEKVDKVRLAGLEYVI 181 (307)
T ss_pred EEecCchhhHHHHHhhhhhhhhhhhhccC-CCCCCCceEEEecchhccChHHHHHHHHHHHHHcCCcccceeeccccEEE
Confidence 999999 99999999999999999855 7889999999999 999999999999999999999999999999999999
Q ss_pred EEEEeCCE-EEEeecccccC
Q psy3244 252 SFSILDNR-IWFRNYQILSE 270 (569)
Q Consensus 252 sFs~~Ddk-IwFR~YqI~~s 270 (569)
+||+.++. |+||+|.+.+.
T Consensus 182 vfta~~~~~v~~r~Y~lklk 201 (307)
T KOG3031|consen 182 VFTATEETNVLFRVYRLKLK 201 (307)
T ss_pred EEEeecCceeeeeeeeeeee
Confidence 99998665 99999998764
No 9
>KOG2963|consensus
Probab=99.89 E-value=3.4e-23 Score=213.22 Aligned_cols=182 Identities=16% Similarity=0.219 Sum_probs=155.1
Q ss_pred cccccccCceEEEEecCCCCHhHHHHHHHHHHhC-CCCCCCCccccCCccchHHHHHhhcCCCeEEEEEecCCCCCeEEE
Q psy3244 97 NERRWINKQRVLIFASRGISFTDRHLMKNLQNML-PHSRPGTKMERKDTLTVVNEICEMKNCNKCILFEGRLRRDLYMWF 175 (569)
Q Consensus 97 ~~~~~eNkkKvLIl~SRgvS~r~RhLmkDL~~Lm-Phskk~~K~drkn~l~~Lnelae~~~cn~~LffE~rKKrplyLwi 175 (569)
.+..+.-.+-++|+.++-+...+++|..||+.|| ||++...|..+.|.++++..+|...|++|+++|+.+... ++|.|
T Consensus 18 ~e~~i~~~ph~~v~~rgla~~~~~~L~~DlR~iMeP~TA~~LkerK~N~iKDfv~~~gplGVTH~l~lskt~~n-lslki 96 (405)
T KOG2963|consen 18 QEIEIAKSPHIRVGHRGLAGRSLKQLTLDLRRIMEPHTASNLKERKRNKLKDFVVMSGPLGVTHLLMLSKTETN-LSLKI 96 (405)
T ss_pred chhhcccCceEEEEecccccccHHHHHHHHHHhhCcchhhHHHHHhhhhhhhHHhhcccccceEEEEEecccCc-eeEEE
Confidence 3344544566666666666689999999999999 999999999999999999999999999999999999875 99999
Q ss_pred eecCCCCeeEEEeeeeeehhhhcc-cCCC-----CCCCCCeEEecCCCCCc--hhhHHHHHHHhhhcCCCCCCCCcCCCC
Q psy3244 176 ANVHEGPSLKCLVESVFTMGELKL-TGNS-----LKGSRPLLSFDEKFSQE--PHYRLMQELLTQIFGTPKDLPKSQPFI 247 (569)
Q Consensus 176 sr~P~GPTikF~VeN~~Tm~ELk~-tGN~-----lkgSrPlLvFd~~Fds~--phlkLlKeLL~~~F~~P~~~~kskpfi 247 (569)
.|+|.|||+.|.|..|++..|+.. .-++ +=-+.|+||.|| |++. +|++|+..||++|||..+++.+.+..|
T Consensus 97 ~R~PqGPTLtFkV~qYsLardV~~~qkrp~~~~~~Fk~pPLlVmNg-Fg~~~~~HlkL~~t~FQNmFPsInv~tvnlnti 175 (405)
T KOG2963|consen 97 ARTPQGPTLTFKVHQYSLARDVVSLQKRPKSPNDLFKSPPLLVLNG-FGTSGRKHLKLMTTMFQNMFPSINVATVNLNTI 175 (405)
T ss_pred EecCCCCceEEEeeehhhHHHHHHHHhCCCCchhhccCCCEEEEcc-CCCCcchhHHHHHHHHHHcCCCcCcceeeccce
Confidence 999999999999999999999963 2222 234899999999 9876 899999999999999999999999999
Q ss_pred cEEEEEEEe--CCEEEEeecccccCCchH---HHHHHH
Q psy3244 248 DHVISFSIL--DNRIWFRNYQILSEDGAL---FRQQLK 280 (569)
Q Consensus 248 DhVisFs~~--DdkIwFR~YqI~~srG~L---vRalLK 280 (569)
.||+.++|. ++.|.||||.|....-.+ +|++++
T Consensus 176 kRcllinyn~dt~eIdmRHysI~vvpVGisR~vkkl~k 213 (405)
T KOG2963|consen 176 KRCLLINYNRDTGEIDMRHYSIRVVPVGISRNVKKLVK 213 (405)
T ss_pred eEEEEEecCCCCCeeeeeeeEEEEEecccchHHHHHHh
Confidence 999999995 678999999998754333 555443
No 10
>KOG2780|consensus
Probab=99.76 E-value=5.4e-18 Score=170.39 Aligned_cols=160 Identities=17% Similarity=0.242 Sum_probs=137.5
Q ss_pred cccCceEEEEecCCCCHhHHHHHHHHHHhCCCCCCCCccccCCccchHHHHHhhcCCCeEEEEEecCCCCCeEEEeecCC
Q psy3244 101 WINKQRVLIFASRGISFTDRHLMKNLQNMLPHSRPGTKMERKDTLTVVNEICEMKNCNKCILFEGRLRRDLYMWFANVHE 180 (569)
Q Consensus 101 ~eNkkKvLIl~SRgvS~r~RhLmkDL~~LmPhskk~~K~drkn~l~~Lnelae~~~cn~~LffE~rKKrplyLwisr~P~ 180 (569)
.+..++|||+++...+.....|+..|..++||+.. +....-.++.|.++|...+.+++++....++.|+.|.|+++|+
T Consensus 93 ~~~spKvlITt~~~~~~~t~~~~~eL~~iiPNs~~--~~R~~~~vk~i~~~a~~~eftdlvvV~edRkk~n~L~iihlP~ 170 (302)
T KOG2780|consen 93 REFSPKVLITTSKNPKRTTYKFASELLDIIPNSTV--KKRDNYTVKSIVEIAIKREFTDLVVVNEDRKKPNGLKIIHLPN 170 (302)
T ss_pred cccCccEEEEcCCCCcccHHHHHHHHHHhCCCceE--EecCCchHHHHHHHHHHhcCCceEEEecCcCCccceEEEecCC
Confidence 34559999999999999999999999999999964 3333446899999999999998766665555579999999999
Q ss_pred CCeeEEEeeeeeehhhhcccCCCCCCCCCeEEecCCCCCchhhHHHHHHHhhhcCCCC-CCCCcCCCCcEEEEEEEeCCE
Q psy3244 181 GPSLKCLVESVFTMGELKLTGNSLKGSRPLLSFDEKFSQEPHYRLMQELLTQIFGTPK-DLPKSQPFIDHVISFSILDNR 259 (569)
Q Consensus 181 GPTikF~VeN~~Tm~ELk~tGN~lkgSrPlLvFd~~Fds~phlkLlKeLL~~~F~~P~-~~~kskpfiDhVisFs~~Ddk 259 (569)
|||++|.+.||.+..|++..|++. +..|-|+.++ |.+..++. |.+||+.+|+-++ ... .+|++|+++.|.
T Consensus 171 GPT~~Fkls~~~~~kdi~k~g~~t-~h~PElIlNN-FtTrlG~~-v~r~f~sLfp~~p~f~g------RrvvtFhnQrD~ 241 (302)
T KOG2780|consen 171 GPTAYFKLSNVVLTKDIKKHGRPT-SHIPELILNN-FTTRLGMT-VGRLFASLFPHDPQFTG------RRVVTFHNQRDY 241 (302)
T ss_pred CCceEEEeecccchhhhhhcCCcc-cccchhhhhc-ccchhhHH-HHHHHHHhCCCCccccc------eeEEEEEecCce
Confidence 999999999999999999889644 6699999998 99999988 6789999999433 333 499999999999
Q ss_pred EEEeecccccCC
Q psy3244 260 IWFRNYQILSED 271 (569)
Q Consensus 260 IwFR~YqI~~sr 271 (569)
|+||||+|....
T Consensus 242 IfFRhhRY~Fke 253 (302)
T KOG2780|consen 242 IFFRHHRYEFKE 253 (302)
T ss_pred EEEEEEEEeecc
Confidence 999999999865
No 11
>COG5106 RPF2 Uncharacterized conserved protein [Function unknown]
Probab=99.53 E-value=8.4e-15 Score=146.00 Aligned_cols=167 Identities=13% Similarity=0.199 Sum_probs=144.6
Q ss_pred cccCceEEEEecCCCCHhHHHHHHHHHHhC-CCCCCCCccccCC---ccchHHHHHhhcCCCeEEEEEecCCCCCeEEEe
Q psy3244 101 WINKQRVLIFASRGISFTDRHLMKNLQNML-PHSRPGTKMERKD---TLTVVNEICEMKNCNKCILFEGRLRRDLYMWFA 176 (569)
Q Consensus 101 ~eNkkKvLIl~SRgvS~r~RhLmkDL~~Lm-Phskk~~K~drkn---~l~~Lnelae~~~cn~~LffE~rKKrplyLwis 176 (569)
.++-+.++++.+-..+..+-.+|-|+..+. |......+.|... +...++.++++++|...++|.+.++++++|.++
T Consensus 24 ve~~k~AiF~pg~s~~k~lldvi~d~~alkkp~~i~f~rkn~ihpfEd~SplEffseknd~~l~vl~ts~kKr~hnlt~~ 103 (316)
T COG5106 24 VEAHKDAIFYPGMSERKTLLDVICDTEALKKPKEIGFIRKNTIHPFEDTSPLEFFSEKNDKKLSVLFTSVKKRRHNLTIG 103 (316)
T ss_pred hhhhhheEeccCcccchhhhhhhcchhhhccchhhccccCCcccccccCCHHHHHHHhhhhhhhhhhhhccccccceeEE
Confidence 577888999999999999999999999996 9887555444443 346889999999999999999999999999999
Q ss_pred ecCCC---CeeEEEeeeeeehhhhcccCCCCCCCCCeEEecC-CCCCchhhHHHHHHHhhhcCCCCCCCCcCCCCcEEEE
Q psy3244 177 NVHEG---PSLKCLVESVFTMGELKLTGNSLKGSRPLLSFDE-KFSQEPHYRLMQELLTQIFGTPKDLPKSQPFIDHVIS 252 (569)
Q Consensus 177 r~P~G---PTikF~VeN~~Tm~ELk~tGN~lkgSrPlLvFd~-~Fds~phlkLlKeLL~~~F~~P~~~~kskpfiDhVis 252 (569)
|+++. +||+|.|.+|.+..||..+|- ..|.+|+++|.| +||..|.|+.|++||.|+|++.....-.-.++.+||+
T Consensus 104 R~Fny~~~DMiEl~i~~yksvsdF~~~~~-~~g~Kpmv~fQg~~fd~hp~yr~iksLflDFFrges~~~ldsagls~Vi~ 182 (316)
T COG5106 104 RAFNYELIDMIELKINRYKSVSDFECAGP-ELGMKPMVVFQGINFDAHPTYRRIKSLFLDFFRGESSKVLDSAGLSWVIA 182 (316)
T ss_pred eecchHHHHHHHHhhhhhhehhhhhccCC-ccCCceEEEEeccccccchHHHHHHHHHHHHHcCCchhhhhhcceeEEEE
Confidence 99999 999999999999999998776 559999999999 9999999999999999999977666544568999999
Q ss_pred EEEe----CCE----EEEeecccc
Q psy3244 253 FSIL----DNR----IWFRNYQIL 268 (569)
Q Consensus 253 Fs~~----Ddk----IwFR~YqI~ 268 (569)
-|.. |+. +.||.|...
T Consensus 183 ~t~~g~~~d~~plp~v~fRVyk~k 206 (316)
T COG5106 183 RTEEGYVLDTYPLPLVVFRVYKTK 206 (316)
T ss_pred Eecchhhhccccccceeeeeeecc
Confidence 9986 333 789999854
No 12
>PRK03972 ribosomal biogenesis protein; Validated
Probab=99.52 E-value=2.6e-13 Score=133.53 Aligned_cols=130 Identities=13% Similarity=0.087 Sum_probs=110.3
Q ss_pred EEEEecCCCCHhHHHHHHHHHHhCCCCCCCCccccCC-ccchHHHHHhhcCCCeEEEEEecCCCCCeEEEeecCCC---C
Q psy3244 107 VLIFASRGISFTDRHLMKNLQNMLPHSRPGTKMERKD-TLTVVNEICEMKNCNKCILFEGRLRRDLYMWFANVHEG---P 182 (569)
Q Consensus 107 vLIl~SRgvS~r~RhLmkDL~~LmPhskk~~K~drkn-~l~~Lnelae~~~cn~~LffE~rKKrplyLwisr~P~G---P 182 (569)
+||++||.+|.+.++|++||..++|++.. ++++. .+++|.+.|..+|.+.+|+....++.|+.|.++++|+| |
T Consensus 2 iLITTSr~PS~rtr~F~keL~~v~Pns~~---i~RGk~~lkel~~~A~~~g~TdLIVV~E~rg~P~~L~i~hLP~gP~GP 78 (208)
T PRK03972 2 MLITTSHRPTRRTRSFGHDLERVFPNSLY---LTRGKKTIQDLLMEAYDRGYERLLIINVWKGNPLKMTFIKVGPEDWGY 78 (208)
T ss_pred EEEECCCCccHHHHHHHHHHHHhCCCCEE---EecCCccHHHHHHHHHHCCCCeEEEEecCCCcCCeEEEEcCCCCCCCc
Confidence 79999999999999999999999999974 44454 78999999999999999999888999999999999855 5
Q ss_pred eeEEEeeeeeehhhh--cccCCCCCCCCCeEEecCCCCCchhhHHHHHHHhhhcCCCCCCC
Q psy3244 183 SLKCLVESVFTMGEL--KLTGNSLKGSRPLLSFDEKFSQEPHYRLMQELLTQIFGTPKDLP 241 (569)
Q Consensus 183 TikF~VeN~~Tm~EL--k~tGN~lkgSrPlLvFd~~Fds~phlkLlKeLL~~~F~~P~~~~ 241 (569)
|+.|.|.|+.+.+|+ +..|. +.++.|++|..+ |.+.+++.-.-..+-.-++.|.+.+
T Consensus 79 Ta~FkLsnV~l~~ei~~~~~~~-~s~~~p~iItts-~kt~~g~~~~Ak~lA~eLgi~yV~R 137 (208)
T PRK03972 79 LGYLYLHGIKLQREMGFRNLRP-IREDMPLVITTA-KRVGLDHMAFAQVFAELTGGKFVPR 137 (208)
T ss_pred eEEEEEccEEEHHHcccCCCCC-ccccccEEEEcC-CCCCHHHHHHHHHHHHHhCCceeCc
Confidence 999999999999999 44554 567899999997 9999866333445677778777766
No 13
>PF04427 Brix: Brix domain; InterPro: IPR007109 The Brix domain is found in a number of eukaryotic proteins including some from Saccharomyces cerevisiae and Homo sapiens, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins. There are six (one archaean and five eukaryotic) protein families which have a similar domain architecture with a central globular Brix domain. They have an optional N- and obligatory C-terminal segments, which both have charged low-complexity regions []. Proteins from the Imp4/Brix superfamily appear to be involved in ribosomal RNA processing, which essential for the functioning of all cells. The N- and C-terminal halves of a member of the superfamily, Mil, show significant structural similarity to one another. This suggests an origin by means of an ancestral duplication. Both halves have the same fold as the anticodon-binding domain of class IIa aminoacyl-tRNA synthetases, with greater conservation seen in the N-terminal half. Structural evidence suggests that the Imp4/Brix superfamily proteins could bind single-stranded segments of RNA along a concave surface formed by the N-terminal half of their beta-sheet and a central alpha-helix [].; PDB: 2CXH_A.
Probab=99.44 E-value=1.6e-14 Score=137.13 Aligned_cols=159 Identities=25% Similarity=0.246 Sum_probs=41.0
Q ss_pred HHHHHHHHhchh-hhHHHHHHHHHHHhhhhhccCCCCCCchhhhhcchhHHHHHHHHHHhhhhhhhccCCCccccCCCCc
Q psy3244 275 FRQQLKRLAGQK-YELKNEEREKQKQTKEMLQIEPADENDISNILQKKKIKEAFKMMKKQKEKAKELSKPGLVMKTKDGK 353 (569)
Q Consensus 275 vRalLKr~kA~K-Y~~RkEqK~drK~rK~e~~~~~lp~DELddVF~~n~~~e~f~e~kk~~~~~lw~~~~~~~~k~p~gp 353 (569)
+|+++++..... |.+....+.....-+ +. -+++...+|..++ ++...+....+ ||+++.|+||
T Consensus 11 ~~~l~~DL~~l~~p~s~~~~r~~~~~l~-~~-------~~~~~~~~~~~l~--~~~~~~k~p~~------L~i~r~~~gp 74 (191)
T PF04427_consen 11 LRQLMKDLRSLFPPNSKKLNRKKKNSLK-DL-------LEFAKQKNCTSLF--VFGEHKKNPNN------LWIGRLPNGP 74 (191)
T ss_dssp HHHHHHHHHTTS-TTEEE---TT---HH-HH-------HHHHHHTTEEEEE--EEEEETTEEEE------EEEEE-SS--
T ss_pred HHHHHHHHHHHcCCCeEEEeCCCCCchH-HH-------HHHHHHCCCCEEE--EEEEeCCCcce------EEEEecCCCC
Confidence 888889888888 777665543331111 11 3445555555555 33333323444 5556999999
Q ss_pred ee-----eccchhhhhhh----------hhcccc-----chhHHHHHHHHhhhCCCCCCCCCCCcceeEEEEEEecCe-E
Q psy3244 354 KI-----NKHKLKRLKEN----------LEQRKK-----MKDRKKKAKKQTIFGTPKDLPKSQPFIDHVISFSILDNR-I 412 (569)
Q Consensus 354 s~-----n~ht~~~l~~~----------~~~~~~-----f~~~like~~~~~f~~p~~~~kskpf~Dhv~~f~~~d~~-i 412 (569)
++ |.++|.+++.. +.+.-. =+++++++||+++|..|..+....+++|||++|++.+|. |
T Consensus 75 tl~f~I~~~~~~~~~~~~~~~~~~~~P~lif~g~~~~~~~~~~~ik~~l~~lF~~~~~~~~~~~~~~rvi~f~~~~d~~I 154 (191)
T PF04427_consen 75 TLEFSIENYKLMKDIKSSSKRPKGSRPLLIFNGFFFELDPELKLIKELLQDLFPGPNVDSIPLPGIDRVISFSNQRDFVI 154 (191)
T ss_dssp EEEEEEEEEE-HHHHT-------S---EEEEE------------------------------------------------
T ss_pred CEEEEEEeEEEhhHhcccccCCCCCCeEEEEEeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99 89999999741 111111 137899999999999999999999999999999999888 9
Q ss_pred EEEEeeeecCcchhHHHHHHHHhhhcchhhHHHHHHhhhcccccccCCcCCCccccc
Q psy3244 413 WFRNYQILSEDGALFRQQLKRLAGQKYELKNEEREKQKQTKEMLQIEPADENDISNI 469 (569)
Q Consensus 413 w~r~yqi~~~~~~~~~~~~~~~~~~k~~~~~~~k~~~~~~~~lieigp~~~~~~~~i 469 (569)
||||| |. ..|. +...... ..-.|+|||||+.+.+..|
T Consensus 155 ~fR~Y-i~-~~~~------------~~~~~~~------~~v~L~EiGPr~~l~l~kI 191 (191)
T PF04427_consen 155 FFRHY-IF-KSGS------------KNPKKLL------PRVELVEIGPRFTLKLRKI 191 (191)
T ss_dssp ---------------------------------------------------------
T ss_pred ccccc-cc-cccc------------ccccccc------cccccccccccccccccCC
Confidence 99999 82 2221 0000000 1122899999999998776
No 14
>COG2136 IMP4 Predicted exosome subunit/U3 small nucleolar ribonucleoprotein (snoRNP) component, contains IMP4 domain [Translation, ribosomal structure and biogenesis / RNA processing and modification]
Probab=99.39 E-value=6.7e-12 Score=122.42 Aligned_cols=157 Identities=17% Similarity=0.182 Sum_probs=133.5
Q ss_pred ceEEEEecCCCCHhHHHHHHHHHHhCCCCCCCCccccCC-ccchHHHHHhhcCCCeEEEEEecCCCCCeEEEeec-CCCC
Q psy3244 105 QRVLIFASRGISFTDRHLMKNLQNMLPHSRPGTKMERKD-TLTVVNEICEMKNCNKCILFEGRLRRDLYMWFANV-HEGP 182 (569)
Q Consensus 105 kKvLIl~SRgvS~r~RhLmkDL~~LmPhskk~~K~drkn-~l~~Lnelae~~~cn~~LffE~rKKrplyLwisr~-P~GP 182 (569)
+++||++||.+|.++|+|.+||...+|++... .+++ .+..+.+.|...+.+.+++...+++.|..|.+.++ |+||
T Consensus 2 ~~~liTTSRkPS~Rtr~Fak~L~~~lp~~~~~---~rg~~~~~el~~~a~~~g~~~l~iv~E~rGnP~~L~f~d~~~~~~ 78 (191)
T COG2136 2 PKMLLTTSRKPSRRTRSFAKDLSRVLPNAYFL---RRGKKSIIELSEEAIARGATDLLIVGERRGNPARLTFYDLEPEGL 78 (191)
T ss_pred CcEEEEecCCccHHHHHHHHHHHHhCCcceEE---ecCccchhHHHHHHHhcCCceEEEEEEecCCCcEEEEEEecCCCc
Confidence 58999999999999999999999999999643 3333 57788999999999999999889999999999999 9999
Q ss_pred eeEEEeeeeeehhhhcccCCCCCCCCCeEEecCCCCCchhhHHHHHHHhhh----cCCCCCCCCcCCCCcEEEEEEEeCC
Q psy3244 183 SLKCLVESVFTMGELKLTGNSLKGSRPLLSFDEKFSQEPHYRLMQELLTQI----FGTPKDLPKSQPFIDHVISFSILDN 258 (569)
Q Consensus 183 TikF~VeN~~Tm~ELk~tGN~lkgSrPlLvFd~~Fds~phlkLlKeLL~~~----F~~P~~~~kskpfiDhVisFs~~Dd 258 (569)
++.|.+.|+.+..|+...++-...+-|+++|++ |.+..+...+.++|..+ |..-.. -....|+.+...++
T Consensus 79 ~~~f~l~~v~l~re~~~~~~~~~~~~~~~I~~~-~~~~~g~~~~~~~~~~~~~~~f~~~~~-----~~~~~v~~~~~~~~ 152 (191)
T COG2136 79 TFSFKLSGVKLRREIPVLGPKSRLHGPELIFNN-FTTLLGFLKVAEAFSELLLVKFVPNPA-----WEHELVATGANKGD 152 (191)
T ss_pred eEEEEEecceEEEeccccCCcccCCCCceeeec-ccccccchhhHHHHHhhcccccccCcc-----cceeeeeeccccce
Confidence 999999999999999887775557899999998 99999877788888888 651111 12357899999999
Q ss_pred EEEEeecccccC
Q psy3244 259 RIWFRNYQILSE 270 (569)
Q Consensus 259 kIwFR~YqI~~s 270 (569)
.+.||.|.....
T Consensus 153 f~~~~~~~~~~~ 164 (191)
T COG2136 153 FKSLRRHRRVFE 164 (191)
T ss_pred EEEEEeeeeEee
Confidence 999988877655
No 15
>smart00879 Brix Brix domain. The Brix domain is found in a number of eukaryotic proteins including SSF proteins from yeast and humans, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins.
Probab=99.22 E-value=1.8e-11 Score=114.22 Aligned_cols=131 Identities=24% Similarity=0.203 Sum_probs=87.0
Q ss_pred HHHHHHHHhchhhhHHHHHHHHHHHhhhhhccCCCCCCchhhhhcchhHHHHHHHHH-HhhhhhhhccCCCccccCCCCc
Q psy3244 275 FRQQLKRLAGQKYELKNEEREKQKQTKEMLQIEPADENDISNILQKKKIKEAFKMMK-KQKEKAKELSKPGLVMKTKDGK 353 (569)
Q Consensus 275 vRalLKr~kA~KY~~RkEqK~drK~rK~e~~~~~lp~DELddVF~~n~~~e~f~e~k-k~~~~~lw~~~~~~~~k~p~gp 353 (569)
+|+.+++.....+......+....... . .|.+..-..|..++ .++.. +..-.+ ||+++.|+||
T Consensus 12 ~r~~~~dL~~~~~~~~~~~r~~~~~~~--~------~e~~~~~~~~~~i~--v~e~~~k~~p~~------L~i~~~~~gp 75 (180)
T smart00879 12 TRQLAKDLRRLFPPSTKINRGKNKLNE--L------LEFASEKGNTDLLV--VFESSSKGRPLN------LTIYRLPNGP 75 (180)
T ss_pred HHHHHHHHHHHCCCcEeecccCccHHH--H------HHHHHHcCCccEEE--EecccCCCCCce------EEEEECCCCC
Confidence 788888877766543333222111100 0 12222222455555 56663 222244 5556999999
Q ss_pred ee-----eccchhhhhhh------hhcccc-----c---hhHHHHHHHHhhhCCCCCCCCCCCcceeEEEEEEecCeEEE
Q psy3244 354 KI-----NKHKLKRLKEN------LEQRKK-----M---KDRKKKAKKQTIFGTPKDLPKSQPFIDHVISFSILDNRIWF 414 (569)
Q Consensus 354 s~-----n~ht~~~l~~~------~~~~~~-----f---~~~like~~~~~f~~p~~~~kskpf~Dhv~~f~~~d~~iw~ 414 (569)
++ ++.++.+++.. ....|. | ...++++||+.+|..|..+..+.+.+|||++|++.+|.|||
T Consensus 76 ~l~f~i~~v~~~~~~~~~~~~~~~~~~~P~li~~~~~~~~~~~~k~~l~~~F~~~~~~~~~~~~~~rvi~f~~~~~~I~~ 155 (180)
T smart00879 76 TLDFKILNVSLRKELKGFKTGNCLTGSRPLLIFNNFFTELGKLIKELFQDLFPGPPEHKKSLPGLRRVVTFSNQDDYIFF 155 (180)
T ss_pred cEEEEEECcccHhhhhhhhcCCCcCCCccEEEECCCCCchHHHHHHHHHHHCCCCCccccccCCCCEEEEEEecCCEEEE
Confidence 99 78888888651 111111 1 13789999999999999999999999999999999999999
Q ss_pred EEeeeec
Q psy3244 415 RNYQILS 421 (569)
Q Consensus 415 r~yqi~~ 421 (569)
|+|+|..
T Consensus 156 R~y~i~~ 162 (180)
T smart00879 156 RHYRIKF 162 (180)
T ss_pred EEEEEEc
Confidence 9999974
No 16
>KOG2781|consensus
Probab=97.73 E-value=2.7e-05 Score=79.06 Aligned_cols=106 Identities=21% Similarity=0.239 Sum_probs=80.7
Q ss_pred CccccCCCCcee--------------eccchhhhhhhhhccccc---hhHHHHHHHHhhhCCCCCCCCCCCcceeEEEEE
Q psy3244 344 GLVMKTKDGKKI--------------NKHKLKRLKENLEQRKKM---KDRKKKAKKQTIFGTPKDLPKSQPFIDHVISFS 406 (569)
Q Consensus 344 ~~~~k~p~gps~--------------n~ht~~~l~~~~~~~~~f---~~~like~~~~~f~~p~~~~kskpf~Dhv~~f~ 406 (569)
|-||-.|=|||. |+-||.|-+--|+|+ .| --.-++.+|.+.|.+|+. =--+|+||+
T Consensus 149 L~vshlPfGPTa~Fsl~nvVmRhdip~~G~msE~~phlIfd-Nf~t~lG~Rv~~iLkhLFP~pk~------ds~Rvvtf~ 221 (290)
T KOG2781|consen 149 LVVSHLPFGPTAFFSLHNVVMRHDIPDIGTMSEQKPHLIFD-NFTTKLGKRVKTILKHLFPVPKD------DSKRVVTFA 221 (290)
T ss_pred eEEEecCCCCceEeeeeeeeecccccccccccccCceEEec-cccchHHHHHHHHHHHhCCCCcC------CcccEEEEe
Confidence 567899999998 355566555444433 22 235689999999999984 235899999
Q ss_pred EecCeEEEEEeeeecCcchhHHHHHHHHhhhcchhhHHHHHHhhhcccccccCCcCCCcccccccCChHHHHHHhh
Q psy3244 407 ILDNRIWFRNYQILSEDGALFRQQLKRLAGQKYELKNEEREKQKQTKEMLQIEPADENDISNILRGDILKKAKKLT 482 (569)
Q Consensus 407 ~~d~~iw~r~yqi~~~~~~~~~~~~~~~~~~k~~~~~~~k~~~~~~~~lieigp~~~~~~~~i~~g~~~~ka~~~~ 482 (569)
.-||-|-||||++.-.+|.. -.|-|+||||.+-+-.|=-|.+..++-+++
T Consensus 222 N~~DyIsFRhhvy~~~~~k~--------------------------vel~evGPRfelklyeIrlGTlE~~~ad~E 271 (290)
T KOG2781|consen 222 NRNDYISFRHHVYKKTDGKE--------------------------VELTEVGPRFELKLYEIRLGTLEIKDADVE 271 (290)
T ss_pred cCCceEEEEEEEEecCCCce--------------------------EEEeeccccceeeeeeeeecceecccccee
Confidence 99999999999998666431 116699999999999999999987666644
No 17
>KOG2963|consensus
Probab=97.40 E-value=0.00028 Score=74.77 Aligned_cols=80 Identities=14% Similarity=0.125 Sum_probs=57.0
Q ss_pred CccccCCCCcee--eccc-----------------hhhhhh-------hhhccccchhHHHHHHHHhhhCCCCCCCCCCC
Q psy3244 344 GLVMKTKDGKKI--NKHK-----------------LKRLKE-------NLEQRKKMKDRKKKAKKQTIFGTPKDLPKSQP 397 (569)
Q Consensus 344 ~~~~k~p~gps~--n~ht-----------------~~~l~~-------~~~~~~~f~~~like~~~~~f~~p~~~~kskp 397 (569)
+-|+|+|-|||+ .+|- =+.++. +|......|+.|+--||+.+|-.=+-|.-.--
T Consensus 94 lki~R~PqGPTLtFkV~qYsLardV~~~qkrp~~~~~~Fk~pPLlVmNgFg~~~~~HlkL~~t~FQNmFPsInv~tvnln 173 (405)
T KOG2963|consen 94 LKIARTPQGPTLTFKVHQYSLARDVVSLQKRPKSPNDLFKSPPLLVLNGFGTSGRKHLKLMTTMFQNMFPSINVATVNLN 173 (405)
T ss_pred EEEEecCCCCceEEEeeehhhHHHHHHHHhCCCCchhhccCCCEEEEccCCCCcchhHHHHHHHHHHcCCCcCcceeecc
Confidence 557899999999 2321 111111 24433223699999999999977766766677
Q ss_pred cceeEEEEEEe--cCeEEEEEeeeecCc
Q psy3244 398 FIDHVISFSIL--DNRIWFRNYQILSED 423 (569)
Q Consensus 398 f~Dhv~~f~~~--d~~iw~r~yqi~~~~ 423 (569)
-|-||+-+.|- ++-|-||||-|....
T Consensus 174 tikRcllinyn~dt~eIdmRHysI~vvp 201 (405)
T KOG2963|consen 174 TIKRCLLINYNRDTGEIDMRHYSIRVVP 201 (405)
T ss_pred ceeEEEEEecCCCCCeeeeeeeEEEEEe
Confidence 78999999883 579999999997543
No 18
>KOG2780|consensus
Probab=96.37 E-value=0.0068 Score=62.67 Aligned_cols=77 Identities=13% Similarity=0.171 Sum_probs=61.0
Q ss_pred HHHHHHHhhhCCCCCCCCCCCcceeEEEEEEecCeEEEEEeeeecCcchhHHHHHHHHhhhcchhhHHHHHHhhhccc-c
Q psy3244 377 KKKAKKQTIFGTPKDLPKSQPFIDHVISFSILDNRIWFRNYQILSEDGALFRQQLKRLAGQKYELKNEEREKQKQTKE-M 455 (569)
Q Consensus 377 like~~~~~f~~p~~~~kskpf~Dhv~~f~~~d~~iw~r~yqi~~~~~~~~~~~~~~~~~~k~~~~~~~k~~~~~~~~-l 455 (569)
-|.+||...|.-++.- ---+|++|....|-|+||+|-+...+.+ -++ |
T Consensus 212 ~v~r~f~sLfp~~p~f-----~gRrvvtFhnQrD~IfFRhhRY~Fkee~--------------------------~kvgl 260 (302)
T KOG2780|consen 212 TVGRLFASLFPHDPQF-----TGRRVVTFHNQRDYIFFRHHRYEFKEEE--------------------------IKVGL 260 (302)
T ss_pred HHHHHHHHhCCCCccc-----cceeEEEEEecCceEEEEEEEEeecccc--------------------------cccch
Confidence 5899999999766521 1468999999999999999999855421 022 5
Q ss_pred cccCCcCCCcccccccCChHHHHHHhhcC
Q psy3244 456 LQIEPADENDISNILRGDILKKAKKLTAK 484 (569)
Q Consensus 456 ieigp~~~~~~~~i~~g~~~~ka~~~~~~ 484 (569)
-|+||||.+-.-...+|.|.+|-.|..-.
T Consensus 261 qElGPrfTLrL~~lq~G~fd~K~ge~~~~ 289 (302)
T KOG2780|consen 261 QELGPRFTLRLRRLQKGTFDEKEGEFEWV 289 (302)
T ss_pred hhcCCceeeeehhhhhccccccceeeeee
Confidence 69999999999999999999988775443
No 19
>PRK00933 ribosomal biogenesis protein; Validated
Probab=94.68 E-value=0.18 Score=49.01 Aligned_cols=96 Identities=21% Similarity=0.205 Sum_probs=66.7
Q ss_pred EEEEecCCCCHhHHHHHHHHHHhCCCCCCCCccccCCccchHHHHHhhcCCCeEEEEEecCCCCCeEEEeecCCCCeeEE
Q psy3244 107 VLIFASRGISFTDRHLMKNLQNMLPHSRPGTKMERKDTLTVVNEICEMKNCNKCILFEGRLRRDLYMWFANVHEGPSLKC 186 (569)
Q Consensus 107 vLIl~SRgvS~r~RhLmkDL~~LmPhskk~~K~drkn~l~~Lnelae~~~cn~~LffE~rKKrplyLwisr~P~GPTikF 186 (569)
++|+||+.+|.+.+.++++|...+ ++..-. ++. ..+.++++..+...+++++..++.|..|.+-..-+.+.+.+
T Consensus 1 mIITTSrkPs~~t~~fAkeLa~~l-n~~yv~---Rgk--~Sl~eL~~~~~~~~llVV~E~kg~P~~L~iyd~~~~~~~~~ 74 (165)
T PRK00933 1 MIITTSRKPSQRTRSLVKDLARFL-NCKYVN---RGK--MSLQELLEECEARYLLIIGEYKGNPGALKFYDVEGNKLLSY 74 (165)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHh-CCEEEc---cCC--ccHHHHHHHhccCcEEEEECCCCCCceEEEEECCCCEEEEE
Confidence 378999999999999999999998 664322 222 34555555555668888888888999999999877777666
Q ss_pred EeeeeeehhhhcccCCCCCCCCCeE
Q psy3244 187 LVESVFTMGELKLTGNSLKGSRPLL 211 (569)
Q Consensus 187 ~VeN~~Tm~ELk~tGN~lkgSrPlL 211 (569)
.+. +..-.|... -...+.+|.+
T Consensus 75 ~~~-v~~~~~~~~--~~~~~~~p~~ 96 (165)
T PRK00933 75 RLS-VKLQREISG--PVFKNRRPIK 96 (165)
T ss_pred EEE-eeeecccCc--ceeecCCCcc
Confidence 553 444444332 2345666654
No 20
>KOG3031|consensus
Probab=90.24 E-value=0.51 Score=49.54 Aligned_cols=80 Identities=18% Similarity=0.231 Sum_probs=56.4
Q ss_pred hhccccchhHHHHHHHHhhhCCCCCCCCCCCcceeEEEEEEecC-eEEEEEeeeec-CcchhHHHHHHHHhhhcchhhHH
Q psy3244 367 LEQRKKMKDRKKKAKKQTIFGTPKDLPKSQPFIDHVISFSILDN-RIWFRNYQILS-EDGALFRQQLKRLAGQKYELKNE 444 (569)
Q Consensus 367 ~~~~~~f~~~like~~~~~f~~p~~~~kskpf~Dhv~~f~~~d~-~iw~r~yqi~~-~~~~~~~~~~~~~~~~k~~~~~~ 444 (569)
|++.+. ++-|+++|...|.-|.-.-----=++||++|+..|+ .|.||+|-+-. ..|.. .-|+|
T Consensus 147 f~~~~~--~krlknL~vDfFrge~vd~v~l~Gl~~v~vfta~~~~~v~~r~Y~lklkKs~~~-------------~PRiE 211 (307)
T KOG3031|consen 147 FDQHPE--YKRLKNLFVDFFRGEKVDKVRLAGLEYVIVFTATEETNVLFRVYRLKLKKSGTR-------------TPRIE 211 (307)
T ss_pred hccChH--HHHHHHHHHHHHcCCcccceeeccccEEEEEEeecCceeeeeeeeeeeeeccCC-------------CCcee
Confidence 444444 888999999999988543333334899999999976 59999999963 23331 12343
Q ss_pred HHHHhhhcccccccCCcCCCccccccc
Q psy3244 445 EREKQKQTKEMLQIEPADENDISNILR 471 (569)
Q Consensus 445 ~k~~~~~~~~lieigp~~~~~~~~i~~ 471 (569)
|.|+||..-+.+-.+.-
T Consensus 212 ----------LeE~GPsldf~irR~~~ 228 (307)
T KOG3031|consen 212 ----------LEEMGPSLDFEIRRTKL 228 (307)
T ss_pred ----------hhhcCCceeEEEEeccC
Confidence 88999998776655544
No 21
>KOG1416|consensus
Probab=38.87 E-value=19 Score=40.37 Aligned_cols=48 Identities=29% Similarity=0.600 Sum_probs=29.9
Q ss_pred CCCCCeEEecCCCCCchhhHHHHHHHhhhcCCCCCCCCcCCCCcEEEEEEEeCCEEEEeecccccCC
Q psy3244 205 KGSRPLLSFDEKFSQEPHYRLMQELLTQIFGTPKDLPKSQPFIDHVISFSILDNRIWFRNYQILSED 271 (569)
Q Consensus 205 kgSrPlLvFd~~Fds~phlkLlKeLL~~~F~~P~~~~kskpfiDhVisFs~~DdkIwFR~YqI~~sr 271 (569)
..|+|+++|.. .+++|+..|..-... ..|+...+.+ +|.|.||+...|
T Consensus 378 ~pSrp~viy~q----------~ke~L~e~~~~L~~~-------~~vinL~ite--~wlR~YQVLP~R 425 (475)
T KOG1416|consen 378 APSRPIVIYSQ----------YKEPLQECYHKLYQR-------GKVINLSITE--TWLRPYQVLPDR 425 (475)
T ss_pred CCCCCEEEeec----------hhHHHHHHHHHHhhc-------CceEeeeech--hhccceeecCCC
Confidence 34777777776 334444444311111 2677777765 899999999876
No 22
>COG5106 RPF2 Uncharacterized conserved protein [Function unknown]
Probab=38.48 E-value=1.5e+02 Score=31.33 Aligned_cols=131 Identities=17% Similarity=0.074 Sum_probs=74.0
Q ss_pred hcchhHHHHHHHHHHhhhhhhhccCCCccccCCCCcee----e--ccchhhhhhh-------hh----------------
Q psy3244 318 LQKKKIKEAFKMMKKQKEKAKELSKPGLVMKTKDGKKI----N--KHKLKRLKEN-------LE---------------- 368 (569)
Q Consensus 318 F~~n~~~e~f~e~kk~~~~~lw~~~~~~~~k~p~gps~----n--~ht~~~l~~~-------~~---------------- 368 (569)
|..-...|+|.+.-...---+.+ .+-|-|+.=++ | +-.|=||+.+ |+
T Consensus 69 fEd~SplEffseknd~~l~vl~t----s~kKr~hnlt~~R~Fny~~~DMiEl~i~~yksvsdF~~~~~~~g~Kpmv~fQg 144 (316)
T COG5106 69 FEDTSPLEFFSEKNDKKLSVLFT----SVKKRRHNLTIGRAFNYELIDMIELKINRYKSVSDFECAGPELGMKPMVVFQG 144 (316)
T ss_pred cccCCHHHHHHHhhhhhhhhhhh----hccccccceeEEeecchHHHHHHHHhhhhhhehhhhhccCCccCCceEEEEec
Confidence 33334466676655543222332 24455654444 3 6667777652 11
Q ss_pred --ccccchhHHHHHHHHhhhCCCCCCCCCCCcceeEEEEEEec----C----eEEEEEeeee-cCcchhHHHHHHHHhhh
Q psy3244 369 --QRKKMKDRKKKAKKQTIFGTPKDLPKSQPFIDHVISFSILD----N----RIWFRNYQIL-SEDGALFRQQLKRLAGQ 437 (569)
Q Consensus 369 --~~~~f~~~like~~~~~f~~p~~~~kskpf~Dhv~~f~~~d----~----~iw~r~yqi~-~~~~~~~~~~~~~~~~~ 437 (569)
|+.|=-++-||.+|-..|.--..------=+-|||+-++.+ + .+-||+|-.- ... +.+
T Consensus 145 ~~fd~hp~yr~iksLflDFFrges~~~ldsagls~Vi~~t~~g~~~d~~plp~v~fRVyk~k~~kt-----------~~~ 213 (316)
T COG5106 145 INFDAHPTYRRIKSLFLDFFRGESSKVLDSAGLSWVIARTEEGYVLDTYPLPLVVFRVYKTKLLKT-----------KTN 213 (316)
T ss_pred cccccchHHHHHHHHHHHHHcCCchhhhhhcceeEEEEEecchhhhccccccceeeeeeecccccc-----------cCC
Confidence 33332478899999999965432111112256888886553 3 3678888743 111 000
Q ss_pred cchhhHHHHHHhhhcccccccCCcCCCcccccccCChH
Q psy3244 438 KYELKNEEREKQKQTKEMLQIEPADENDISNILRGDIL 475 (569)
Q Consensus 438 k~~~~~~~k~~~~~~~~lieigp~~~~~~~~i~~g~~~ 475 (569)
+-|++ |.|+|||.-..+-.++.-|..
T Consensus 214 --lpr~e----------lee~GPrldf~i~R~~~~s~d 239 (316)
T COG5106 214 --LPRLE----------LEECGPRLDFEIVRSYHCSDD 239 (316)
T ss_pred --CCcee----------hhhcccceeeEEEeecCCChH
Confidence 12332 789999999999999886543
No 23
>PF08869 XisI: XisI protein; InterPro: IPR014968 The fdxN element, along with two other DNA elements, is excised from the chromosome during heterocyst differentiation in cyanobacteria. The xisH as well as the xisF and xisI genes are required []. ; PDB: 3D7Q_A 2NWV_A 2NVM_A 2NLV_B.
Probab=33.05 E-value=32 Score=31.82 Aligned_cols=43 Identities=19% Similarity=0.257 Sum_probs=30.3
Q ss_pred hhHHHHHHHHhhhCCCCCCCC--CCCccee---------------------EEEEEEecCeEEEEE
Q psy3244 374 KDRKKKAKKQTIFGTPKDLPK--SQPFIDH---------------------VISFSILDNRIWFRN 416 (569)
Q Consensus 374 ~~~like~~~~~f~~p~~~~k--skpf~Dh---------------------v~~f~~~d~~iw~r~ 416 (569)
|..+|+++|++--..+..++. +++.+|. ++=|-+.||||||-.
T Consensus 7 Yr~iI~~iL~~ya~~~~~~~~ie~~~ifD~e~dhYll~~~GW~~~~ri~g~~iH~dI~dgKIWIq~ 72 (111)
T PF08869_consen 7 YRQIIKQILEEYAQIKPSNGDIETQLIFDTERDHYLLMSVGWDNQRRIHGCLIHLDIKDGKIWIQR 72 (111)
T ss_dssp HHHHHHHHHHHHHHHCHSSTCEEEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCEEEEEEeeEECCEEEEEEEEEEEEECCeEEEEc
Confidence 567999999988877665554 5555552 344677899999853
No 24
>PF12513 SUV3_C: Mitochondrial degradasome RNA helicase subunit C terminal; InterPro: IPR022192 This domain family is found in bacteria and eukaryotes, and is approximately 50 amino acids in length. The family is found in association with PF00271 from PFAM. The yeast mitochondrial degradosome (mtEXO) is an NTP-dependent exoribonuclease involved in mitochondrial RNA metabolism. mtEXO is made up of two subunits: an RNase (DSS1) and an RNA helicase (SUV3). These co-purify with mitochondrial ribosomes. ; GO: 0016817 hydrolase activity, acting on acid anhydrides; PDB: 3RC8_A 3RC3_A.
Probab=27.08 E-value=27 Score=27.25 Aligned_cols=13 Identities=23% Similarity=0.015 Sum_probs=9.4
Q ss_pred hhhhhhccCCCccccCCC
Q psy3244 334 KEKAKELSKPGLVMKTKD 351 (569)
Q Consensus 334 ~~~~lw~~~~~~~~k~p~ 351 (569)
=++|+||| .|.|+
T Consensus 11 l~lYlWLs-----~Rfp~ 23 (49)
T PF12513_consen 11 LDLYLWLS-----YRFPD 23 (49)
T ss_dssp HHHHHHHH-----CC-TT
T ss_pred HHHHHHHH-----HHccc
Confidence 48999998 67763
No 25
>KOG1144|consensus
Probab=25.84 E-value=1.5e+02 Score=36.03 Aligned_cols=30 Identities=30% Similarity=0.509 Sum_probs=19.6
Q ss_pred ccccchhhhhHHHHHHhHHHHHhhhHHHHhh
Q psy3244 534 KDGKKINKHKLKRLKENLEQRKKMKDRKKKA 564 (569)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (569)
+.+||+.|+ +..++|.|+.++...+|+++-
T Consensus 207 k~~kk~~Kg-v~~~qe~La~~qe~eE~qkre 236 (1064)
T KOG1144|consen 207 KAEKKKPKG-VRAMQEALAKRQEEEERQKRE 236 (1064)
T ss_pred ccccccchh-HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555 778888887777766666553
No 26
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=21.54 E-value=60 Score=36.83 Aligned_cols=37 Identities=19% Similarity=0.139 Sum_probs=27.2
Q ss_pred cCCCCcee--eccchhhhhhh--hhccccc---hhHHHHHHHHh
Q psy3244 348 KTKDGKKI--NKHKLKRLKEN--LEQRKKM---KDRKKKAKKQT 384 (569)
Q Consensus 348 k~p~gps~--n~ht~~~l~~~--~~~~~~f---~~~like~~~~ 384 (569)
+.|+||.| ..|||+-|.-. +...+.| +++=|++++..
T Consensus 449 kLpdgpviLspd~t~aal~relIlrkpE~FKiayLndl~slf~e 492 (580)
T COG5083 449 KLPDGPVILSPDRTMAALYRELILRKPEVFKIAYLNDLKSLFIE 492 (580)
T ss_pred cCCCCCEeeccchhhhhhhhhhhhcChHHHHHHHHHHHHHhhCc
Confidence 67999999 89999999665 4455677 56666665543
No 27
>COG2136 IMP4 Predicted exosome subunit/U3 small nucleolar ribonucleoprotein (snoRNP) component, contains IMP4 domain [Translation, ribosomal structure and biogenesis / RNA processing and modification]
Probab=20.35 E-value=93 Score=31.19 Aligned_cols=27 Identities=33% Similarity=0.514 Sum_probs=25.5
Q ss_pred eEEEEeecCCchhhhHHHHHHhhhCCC
Q psy3244 54 RVLIFASRGISFTDRHLMKNLQNMLPH 80 (569)
Q Consensus 54 rvl~~~~rg~~~~~rhlm~d~~~l~ph 80 (569)
++||-+||--+-|+|++-+||...+|-
T Consensus 3 ~~liTTSRkPS~Rtr~Fak~L~~~lp~ 29 (191)
T COG2136 3 KMLLTTSRKPSRRTRSFAKDLSRVLPN 29 (191)
T ss_pred cEEEEecCCccHHHHHHHHHHHHhCCc
Confidence 689999999999999999999999984
Done!