Query psy3244
Match_columns 569
No_of_seqs 309 out of 599
Neff 4.2
Searched_HMMs 29240
Date Fri Aug 16 20:01:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3244.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3244hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cxh_A Probable BRIX-domain ri 99.9 2.3E-23 7.7E-28 204.1 15.1 147 102-253 31-182 (217)
2 1w94_A MIL, probable BRIX-doma 98.8 1.2E-08 4.2E-13 95.3 9.9 126 106-257 1-127 (156)
3 2cxh_A Probable BRIX-domain ri 94.6 0.015 5E-07 57.1 2.8 35 50-84 31-65 (217)
4 2nwv_A XISI protein-like; YP_3 43.0 11 0.00039 33.6 2.3 43 374-416 8-75 (114)
5 2nlv_A XISI protein-like; XISI 42.9 17 0.00059 32.3 3.4 43 374-416 8-73 (112)
6 3d7q_A XISI protein-like; stru 36.9 16 0.00056 32.5 2.3 43 374-416 8-73 (112)
7 2nvm_A FDXN element excision c 24.8 22 0.00075 32.4 1.0 20 374-393 8-27 (126)
8 2kw3_A DNA-binding protein RFX 13.6 63 0.0021 26.3 1.1 14 335-355 39-52 (68)
9 2hzs_I RNA polymerase II media 11.0 6.8 0.00023 26.3 -4.3 16 394-409 3-19 (27)
10 4ffe_X CPXV018 protein; viral 7.6 3.2E+02 0.011 24.7 3.7 63 205-267 26-100 (151)
No 1
>2cxh_A Probable BRIX-domain ribosomal biogenesis protein; 18S rRNA, IMP4, U3 snoRNP, ribosomal biogenesis binding, structural genomics, NPPSFA; 1.80A {Aeropyrum pernix} SCOP: c.51.1.2
Probab=99.90 E-value=2.3e-23 Score=204.08 Aligned_cols=147 Identities=15% Similarity=0.160 Sum_probs=127.2
Q ss_pred ccCceEEEEecCCCCHhHHHHHHHHHHhCCCCCCCCccccCCccchHHHHHhhcCCCeEEEEEecCCCCCeEEEeecCCC
Q psy3244 102 INKQRVLIFASRGISFTDRHLMKNLQNMLPHSRPGTKMERKDTLTVVNEICEMKNCNKCILFEGRLRRDLYMWFANVHEG 181 (569)
Q Consensus 102 eNkkKvLIl~SRgvS~r~RhLmkDL~~LmPhskk~~K~drkn~l~~Lnelae~~~cn~~LffE~rKKrplyLwisr~P~G 181 (569)
.-.+|+||++||++|+++++|++||..++||+.+.++ .+..+.+|++.|..++|+++|+++.+++.|.+||++++|+|
T Consensus 31 ~~~pKvLITTSr~pS~r~r~fakeL~~~lPns~~i~R--gk~sLkeL~e~a~~~~~tdlivV~e~rg~p~~L~~~hlP~G 108 (217)
T 2cxh_A 31 VGGYRILVTTSRRPSPRIRSFVKDLSATIPGAFRFTR--GHYSMEELAREAIIRGADRIVVVGERRGNPGIIRVYAVEGP 108 (217)
T ss_dssp --CCEEEEEESSSCCHHHHHHHHHHHTTSTTEEECCC--TTCCHHHHHHHHHHTTEEEEEEEEEETTEEEEEEEEECCSS
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHHHCCCCEEeec--CCcCHHHHHHHHHhCCCCEEEEEEecCCCCcEEEEEECCCC
Confidence 3478999999999999999999999999999975442 34578999999999999999999999999999999999999
Q ss_pred ---C-eeEEEeeeeeehhhhcccCCCCCCCCCeEEecCCCCCchhhHHHHHHHhhhcCCCCCCCCcCCC-CcEEEEE
Q psy3244 182 ---P-SLKCLVESVFTMGELKLTGNSLKGSRPLLSFDEKFSQEPHYRLMQELLTQIFGTPKDLPKSQPF-IDHVISF 253 (569)
Q Consensus 182 ---P-TikF~VeN~~Tm~ELk~tGN~lkgSrPlLvFd~~Fds~phlkLlKeLL~~~F~~P~~~~kskpf-iDhVisF 253 (569)
| |++|+|.|+++++|++.+|||+.+++|.|+ + +|++. ++.++++||+++|++|....-+..+ .|-++.+
T Consensus 109 ~~~P~Ta~F~I~nv~l~~ei~~~g~~~~~~rP~L~-~-nF~t~-~g~~i~~~f~~lFp~P~~~~~~~~~~~d~~~~i 182 (217)
T 2cxh_A 109 ERPDNIVSFIVKGVSLSRERRWGLPSLRGGEVLVA-R-PLDSG-VAVEFADAFVIAFHARLKPPEAAGYVEAVIESL 182 (217)
T ss_dssp SCCEEEEEEEEEEEECHHHHTCCCCCCCSCCEEEE-E-ESSSS-THHHHHHHHHHHHCCBSSCCSSSCEEEEEEEEE
T ss_pred CCCCcEEEEEEeeEEehhhhccCCCccCCCCceEE-e-eecCc-hHHHHHHHHHHHcCCCCCChhhhcccccEEEEE
Confidence 9 999999999999999999999999999999 4 59988 7889999999999998874321111 2555555
No 2
>1w94_A MIL, probable BRIX-domain ribosomal biogenesis protein; archaeal IMP4-BRIX domain, IMP4 domain; 2.0A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.2
Probab=98.82 E-value=1.2e-08 Score=95.29 Aligned_cols=126 Identities=17% Similarity=0.081 Sum_probs=85.0
Q ss_pred eEEEEecCCCCHhHHHHHHHHHHhCCCCCCCCccccCC-ccchHHHHHhhcCCCeEEEEEecCCCCCeEEEeecCCCCee
Q psy3244 106 RVLIFASRGISFTDRHLMKNLQNMLPHSRPGTKMERKD-TLTVVNEICEMKNCNKCILFEGRLRRDLYMWFANVHEGPSL 184 (569)
Q Consensus 106 KvLIl~SRgvS~r~RhLmkDL~~LmPhskk~~K~drkn-~l~~Lnelae~~~cn~~LffE~rKKrplyLwisr~P~GPTi 184 (569)
++||++|+.+|.+++++.++|...+ ++... ++++ .+.+|.+.| ....+|+.|+++ .|..|.++++|+|||+
T Consensus 1 kilITTSr~Ps~~l~~fakeLa~~l-n~~~v---~Rgk~sl~~L~~~~---~~~~iVV~e~rg-~P~~l~i~hlp~gpt~ 72 (156)
T 1w94_A 1 HMLLTTSRKPSQRTRSFSQRLSRIM-GWRYI---NRGKMSLRDVLIEA---RGPVAVVSERHG-NPARITFLDERGGERG 72 (156)
T ss_dssp CCEEEECSSCCHHHHHHHHHHHHHH-TCEEC---CCTTCCHHHHHHHH---SSCEEEEEEETT-EEEEEEEECTTSCEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHh-CCEEE---eeCCcCHHHHHHhc---CCCEEEEEcCCC-CCCeEEEEeCCCCCEE
Confidence 5799999999999999999999999 77643 3433 344454444 444555666554 6899999999999999
Q ss_pred EEEeeeeeehhhhcccCCCCCCCCCeEEecCCCCCchhhHHHHHHHhhhcCCCCCCCCcCCCCcEEEEEEEeC
Q psy3244 185 KCLVESVFTMGELKLTGNSLKGSRPLLSFDEKFSQEPHYRLMQELLTQIFGTPKDLPKSQPFIDHVISFSILD 257 (569)
Q Consensus 185 kF~VeN~~Tm~ELk~tGN~lkgSrPlLvFd~~Fds~phlkLlKeLL~~~F~~P~~~~kskpfiDhVisFs~~D 257 (569)
.|.+ |+.+.+|+.- +.. .. +++.+ +.+.+. .|..+|+.|.....+ +.|++|...+
T Consensus 73 ~f~~-nv~l~~~~~~----~~~-~~-v~~~~---~~~~~~----~l~~~~~~~~~~~~~----~~~~~i~~~~ 127 (156)
T 1w94_A 73 YILF-NPSFEMKKPE----LAD-KA-VRVSS---CPPGSE----GLCNLMGLEVDESSS----RDAWSIRTDE 127 (156)
T ss_dssp EEEE-EEEECSSCCC----CSS-CC-CEESC---CCTTCH----HHHHHHTCEECCSCC----TTEEEEECCS
T ss_pred EEEE-ceEEcccCcc----cCC-ce-EEEec---CChhHH----HHHHHHCCCccCCCC----ceEEEEEeCC
Confidence 9999 9999999852 111 11 33332 244454 455556655543221 5688886333
No 3
>2cxh_A Probable BRIX-domain ribosomal biogenesis protein; 18S rRNA, IMP4, U3 snoRNP, ribosomal biogenesis binding, structural genomics, NPPSFA; 1.80A {Aeropyrum pernix} SCOP: c.51.1.2
Probab=94.65 E-value=0.015 Score=57.13 Aligned_cols=35 Identities=26% Similarity=0.281 Sum_probs=30.9
Q ss_pred ccceeEEEEeecCCchhhhHHHHHHhhhCCCCCCC
Q psy3244 50 INKQRVLIFASRGISFTDRHLMKNLQNMLPHSRPG 84 (569)
Q Consensus 50 ~n~~rvl~~~~rg~~~~~rhlm~d~~~l~ph~k~~ 84 (569)
.-++||||.+||+.+.|+||+++||+.+||++..-
T Consensus 31 ~~~pKvLITTSr~pS~r~r~fakeL~~~lPns~~i 65 (217)
T 2cxh_A 31 VGGYRILVTTSRRPSPRIRSFVKDLSATIPGAFRF 65 (217)
T ss_dssp --CCEEEEEESSSCCHHHHHHHHHHHTTSTTEEEC
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHHHCCCCEEe
Confidence 35889999999999999999999999999998643
No 4
>2nwv_A XISI protein-like; YP_323822.1, structural genomics, PSI-2, structure initiative, joint center for structural genomics; 1.85A {Anabaena variabilis} SCOP: d.326.1.1
Probab=43.02 E-value=11 Score=33.60 Aligned_cols=43 Identities=12% Similarity=0.184 Sum_probs=32.4
Q ss_pred hhHHHHHHHHhhhCCCCCCC----CCCCccee---------------------EEEEEEecCeEEEEE
Q psy3244 374 KDRKKKAKKQTIFGTPKDLP----KSQPFIDH---------------------VISFSILDNRIWFRN 416 (569)
Q Consensus 374 ~~~like~~~~~f~~p~~~~----kskpf~Dh---------------------v~~f~~~d~~iw~r~ 416 (569)
|+.+|+++|++--..+..++ ...+.+|. ++=+-|.||||||-.
T Consensus 8 Yr~iI~~iL~~ya~~~~~~~~~~ie~~lifD~e~dhYll~~~GW~~~~ri~g~~iHidIkd~KIWIq~ 75 (114)
T 2nwv_A 8 YRKLIKQVLTEYDNLSRQSPETNYETCLVFDENHDNYLWLAVDWQGSKRIKYTYVHIRIKNEKIYIEE 75 (114)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSCCCCEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHhcCCccCCCCCeeEEEEEecCCCEEEEEEccEECCEEEEEEEEEEEEECCeEEEEe
Confidence 57899999999998877766 46677762 344567899999853
No 5
>2nlv_A XISI protein-like; XISI-like protein, structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.30A {Anabaena variabilis} SCOP: d.326.1.1
Probab=42.94 E-value=17 Score=32.33 Aligned_cols=43 Identities=23% Similarity=0.322 Sum_probs=32.6
Q ss_pred hhHHHHHHHHhhhCCCCCCC--CCCCccee---------------------EEEEEEecCeEEEEE
Q psy3244 374 KDRKKKAKKQTIFGTPKDLP--KSQPFIDH---------------------VISFSILDNRIWFRN 416 (569)
Q Consensus 374 ~~~like~~~~~f~~p~~~~--kskpf~Dh---------------------v~~f~~~d~~iw~r~ 416 (569)
|+.+|+++|++--..+..++ ...+.+|. ++=+-|.||||||-.
T Consensus 8 Yr~iI~~iL~~ya~~~~~~~~ie~~lifD~e~dhYll~~~GW~~~~ri~g~~iHidIkd~KIWIq~ 73 (112)
T 2nlv_A 8 YQELVKKLLTNYASDDVSDQDVEVQLILDTERNHYQWMNVGWQGLNRIYRCVIHFDIKDGKIWLQQ 73 (112)
T ss_dssp HHHHHHHHHHHHHHTCCCCTTEEEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEEEecCCCEEEEEEccEECCEEEEEEEEEEEEECCeEEEEe
Confidence 57899999999999888776 36666662 344567899999853
No 6
>3d7q_A XISI protein-like; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.30A {Nostoc punctiforme pcc 73102}
Probab=36.92 E-value=16 Score=32.50 Aligned_cols=43 Identities=14% Similarity=0.316 Sum_probs=30.0
Q ss_pred hhHHHHHHHHhhhCCCCCCC--CCCCccee---------------------EEEEEEecCeEEEEE
Q psy3244 374 KDRKKKAKKQTIFGTPKDLP--KSQPFIDH---------------------VISFSILDNRIWFRN 416 (569)
Q Consensus 374 ~~~like~~~~~f~~p~~~~--kskpf~Dh---------------------v~~f~~~d~~iw~r~ 416 (569)
|+.+|+++|++--..+..++ ...+.+|. ++=+-|.||||||-.
T Consensus 8 Yr~iI~~iL~~ya~~~~~~~~ie~~lifD~e~dhYll~~~GW~~~~ri~g~~iHidIkd~KIWIq~ 73 (112)
T 3d7q_A 8 YRTKVRQLLTKHLQYKPSYGDVEVEQIFDEEHDHYQIISVGWNNQHRIYGPIMHLDIKNNKIWIQQ 73 (112)
T ss_dssp HHHHHHHHHHHHHHHC---CEEEEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEEEecCCCEEEEEEccEECCEEEEEEEEEEEEECCeEEEEe
Confidence 57899999999998888776 45666662 344567899999853
No 7
>2nvm_A FDXN element excision controlling factor XISI; YP_321976.1, structural genomics, PSI-2, protein structure initiative; 2.19A {Anabaena variabilis atcc 29413} SCOP: d.326.1.1
Probab=24.75 E-value=22 Score=32.36 Aligned_cols=20 Identities=5% Similarity=0.102 Sum_probs=15.0
Q ss_pred hhHHHHHHHHhhhCCCCCCC
Q psy3244 374 KDRKKKAKKQTIFGTPKDLP 393 (569)
Q Consensus 374 ~~~like~~~~~f~~p~~~~ 393 (569)
|+.+|+++|++--..+..++
T Consensus 8 Yr~iI~~iL~~ya~~~~~~~ 27 (126)
T 2nvm_A 8 YRHTIQEIIKKYYDLSNSQP 27 (126)
T ss_dssp HHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhCCcccc
Confidence 57899999998888776665
No 8
>2kw3_A DNA-binding protein RFX5; mhcii, RFX5, rfxap, enhanceosome, DNA binding protein; NMR {Homo sapiens}
Probab=13.56 E-value=63 Score=26.30 Aligned_cols=14 Identities=14% Similarity=0.043 Sum_probs=12.7
Q ss_pred hhhhhccCCCccccCCCCcee
Q psy3244 335 EKAKELSKPGLVMKTKDGKKI 355 (569)
Q Consensus 335 ~~~lw~~~~~~~~k~p~gps~ 355 (569)
+|||+| +.|.||+-
T Consensus 39 KLyLYL-------kLPsgpss 52 (68)
T 2kw3_A 39 KLYLYL-------QLPSGPTT 52 (68)
T ss_dssp HHHHHH-------TCCCCTTH
T ss_pred hhhhee-------eCCCCCCC
Confidence 789998 99999986
No 9
>2hzs_I RNA polymerase II mediator complex subunit 8; beta barrel, channel, helix, transcription; 2.70A {Saccharomyces cerevisiae}
Probab=10.95 E-value=6.8 Score=26.29 Aligned_cols=16 Identities=38% Similarity=0.843 Sum_probs=9.4
Q ss_pred CCCCc-ceeEEEEEEec
Q psy3244 394 KSQPF-IDHVISFSILD 409 (569)
Q Consensus 394 kskpf-~Dhv~~f~~~d 409 (569)
-|||| +|-|+-|.+.+
T Consensus 3 pskpfnvddvlkftftg 19 (27)
T 2hzs_I 3 PSKPFNVDDVLKFTFTG 19 (27)
T ss_dssp ---CCCHHHHHHHHHHC
T ss_pred CCCCcChhheEEEEecc
Confidence 47888 88887775544
No 10
>4ffe_X CPXV018 protein; viral immune evasion proteins, structural genomics, NKG2D DE ligand, niaid, national institute of allergy and infectious diseases; 2.25A {Cowpox virus}
Probab=7.62 E-value=3.2e+02 Score=24.66 Aligned_cols=63 Identities=19% Similarity=0.378 Sum_probs=40.8
Q ss_pred CCCCCeEEecC-C------C--CCchhhHHHHHHHhhhcCCCCCCCCcCC--CCcEEEEEEEeCCEEEE-eeccc
Q psy3244 205 KGSRPLLSFDE-K------F--SQEPHYRLMQELLTQIFGTPKDLPKSQP--FIDHVISFSILDNRIWF-RNYQI 267 (569)
Q Consensus 205 kgSrPlLvFd~-~------F--ds~phlkLlKeLL~~~F~~P~~~~kskp--fiDhVisFs~~DdkIwF-R~YqI 267 (569)
....|++.||| . | +...-|-+.|++|..+|+-=..-+.|-| -+..-.++.|.+|+--| -+|-+
T Consensus 26 ld~~~i~tfdgkdi~psi~fmig~~~fl~~yknif~eff~lfrrv~~ss~ye~l~y~y~cdyt~n~~t~~q~y~y 100 (151)
T 4ffe_X 26 LDDSQIITFDGKDIRPTIPFMIGDEIFLPFYKNVFSEFFSLFRRVPTSTPYEDLTYFYECDYTDNKSTFDQFYLY 100 (151)
T ss_dssp ETTEEEEEECSSCEEECSGGGTTCSSHHHHHHHHHHHHHHTCCCCCCSSSEEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred ecCCceEEecCcccccccceeeCCeeehHHHHHHHHHHHHHHhhCCCCCcccceeEEEeccccCCccchhheeEe
Confidence 35578888887 1 1 2344678889999988875433444545 34566777788998766 44444
Done!