RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3244
(569 letters)
>gnl|CDD|227483 COG5154, BRX1, RNA-binding protein required for 60S ribosomal
subunit biogenesis [Translation, ribosomal structure and
biogenesis].
Length = 283
Score = 174 bits (443), Expect = 3e-50
Identities = 83/174 (47%), Positives = 115/174 (66%)
Query: 97 NERRWINKQRVLIFASRGISFTDRHLMKNLQNMLPHSRPGTKMERKDTLTVVNEICEMKN 156
N ++ KQ LI +SRG+S+ RHLMK+L ++PHS+ K++ K L +NE+ E+ N
Sbjct: 23 NSAGFVPKQTSLILSSRGVSYRIRHLMKDLSRLVPHSKKEQKLDMKKNLGQLNELAELYN 82
Query: 157 CNKCILFEGRLRRDLYMWFANVHEGPSLKCLVESVFTMGELKLTGNSLKGSRPLLSFDEK 216
CN + FE R R DLY+ A + GP++K + ++ TM EL TGNSLKGSRP+LSFD++
Sbjct: 83 CNNMLFFESRKRSDLYLMGARIPNGPTVKFRMHNLHTMDELNFTGNSLKGSRPVLSFDKE 142
Query: 217 FSQEPHYRLMQELLTQIFGTPKDLPKSQPFIDHVISFSILDNRIWFRNYQILSE 270
F PH + +ELL IFG PK +S+PFID V+ F ILD +IW R Y+I E
Sbjct: 143 FEDIPHLKYAKELLEHIFGIPKGARRSKPFIDKVLCFFILDGKIWVRCYEIGRE 196
Score = 51.5 bits (123), Expect = 4e-07
Identities = 21/40 (52%), Positives = 27/40 (67%)
Query: 383 QTIFGTPKDLPKSQPFIDHVISFSILDNRIWFRNYQILSE 422
+ IFG PK +S+PFID V+ F ILD +IW R Y+I E
Sbjct: 157 EHIFGIPKGARRSKPFIDKVLCFFILDGKIWVRCYEIGRE 196
>gnl|CDD|218084 pfam04427, Brix, Brix domain.
Length = 176
Score = 129 bits (327), Expect = 5e-35
Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 3/162 (1%)
Query: 109 IFASRGISFTDRHLMKNLQNMLPHSRPGTKMERKDTLTVVNEICEMKNCNKCILFEGRLR 168
I SR S R L K+L+ + P+++ + K L + E K ++F +
Sbjct: 1 ITTSRKPSKRLRQLAKDLRLLFPNAKKLNR--GKKKLKDLLEFAGEKGDTSLLVFGEH-K 57
Query: 169 RDLYMWFANVHEGPSLKCLVESVFTMGELKLTGNSLKGSRPLLSFDEKFSQEPHYRLMQE 228
+ L + + GP+L+ + +V + ++K G KGSRPLL F+ F +L++E
Sbjct: 58 KPLNLTIGRLPNGPTLEFRISNVKLLKDIKGKGKGNKGSRPLLVFNGFFFTRLGLKLIKE 117
Query: 229 LLTQIFGTPKDLPKSQPFIDHVISFSILDNRIWFRNYQILSE 270
LL +F P D VI+FS + I+FR+Y+ +
Sbjct: 118 LLQDLFPGPNVHKIPLKGGDRVITFSNQRDTIFFRHYRYKKK 159
Score = 44.6 bits (106), Expect = 3e-05
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 18/82 (21%)
Query: 341 SKPGLVMKTKDGKKINKHKLKRLKENLEQRKKMKDRKKKAKKQTIFGTPKDLPKSQPFID 400
S+P LV +G + LK +KE L Q +F P D
Sbjct: 96 SRPLLVF---NGFFFTRLGLKLIKELL---------------QDLFPGPNVHKIPLKGGD 137
Query: 401 HVISFSILDNRIWFRNYQILSE 422
VI+FS + I+FR+Y+ +
Sbjct: 138 RVITFSNQRDTIFFRHYRYKKK 159
>gnl|CDD|214879 smart00879, Brix, The Brix domain is found in a number of
eukaryotic proteins. Members include SSF proteins from
yeast and humans, Arabidopsis thaliana Peter Pan-like
protein and several hypothetical proteins.
Length = 180
Score = 116 bits (293), Expect = 2e-30
Identities = 58/165 (35%), Positives = 86/165 (52%), Gaps = 10/165 (6%)
Query: 108 LIFASRGISFTDRHLMKNLQNMLPHSRPGTKMERKDT-LTVVNEICEMK-NCNKCILFEG 165
LI SR S R L K+L+ + P S TK+ R L + E K N + ++FE
Sbjct: 1 LITTSRKPSKRTRQLAKDLRRLFPPS---TKINRGKNKLNELLEFASEKGNTDLLVVFES 57
Query: 166 RLR-RDLYMWFANVHEGPSLKCLVESVFTMGELK--LTGNSLKGSRPLLSFDEKFSQEPH 222
+ R L + + GP+L + +V ELK TGN L GSRPLL F+ F++
Sbjct: 58 SSKGRPLNLTIYRLPNGPTLDFKILNVSLRKELKGFKTGNCLTGSRPLLIFNNFFTELGK 117
Query: 223 YRLMQELLTQIFGTPKDLPKSQPFIDHVISFSILDNRIWFRNYQI 267
L++EL +F P + KS P + V++FS D+ I+FR+Y+I
Sbjct: 118 --LIKELFQDLFPGPPEHKKSLPGLRRVVTFSNQDDYIFFRHYRI 160
Score = 43.9 bits (104), Expect = 5e-05
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 383 QTIFGTPKDLPKSQPFIDHVISFSILDNRIWFRNYQI 419
Q +F P + KS P + V++FS D+ I+FR+Y+I
Sbjct: 124 QDLFPGPPEHKKSLPGLRRVVTFSNQDDYIFFRHYRI 160
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 44.4 bits (104), Expect = 2e-04
Identities = 56/284 (19%), Positives = 126/284 (44%), Gaps = 13/284 (4%)
Query: 288 ELKNEEREKQKQTKEMLQIEPADE--NDISNILQKKKIKEAFKMMKKQKEKAKELSKPGL 345
E K + E +K+ E + A + ++ + KK EA K ++ +KA E K
Sbjct: 1487 EAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKK--AEEAKKADEAKKAEE 1544
Query: 346 VMKTKDGKKINKHKLKRLKENLEQRKKMKDRKKKAKKQTIFGTPKDLPKSQPFIDHVISF 405
K + KK + K K+ E+ KK ++ K A ++ + + + +
Sbjct: 1545 KKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVM------ 1598
Query: 406 SILDNRIWFRNYQILSEDGALFRQQLKRLAGQKYELKNEEREKQKQTKEMLQIEPADEND 465
+ + + + + A + + + L + E K E+ K+K+ +E + E + +
Sbjct: 1599 KLYEEEKKMKAEEAKKAEEA--KIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAE 1656
Query: 466 ISNILRGDILKKAKKLTAKPIDLKKESDKAETRATLTEKKKIKEAFKMMKKQKEKAKELS 525
N ++ K + K + K++++ E +A KK+ +EA K + +K++A+E
Sbjct: 1657 EENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKK 1716
Query: 526 KPGLVMKTKDGKKINKHKLKRLKENLEQRKKMKDRKKKAKKQTV 569
K + K ++ KI + K+ + +++K + +K + +K+ +
Sbjct: 1717 KAEELKKAEEENKIKAEEAKK-EAEEDKKKAEEAKKDEEEKKKI 1759
Score = 41.3 bits (96), Expect = 0.002
Identities = 73/300 (24%), Positives = 126/300 (42%), Gaps = 17/300 (5%)
Query: 283 AGQKYELKNEEREKQKQTKEMLQIEPADENDISNILQKK-----KIKEAFKMMKKQKEKA 337
A + E +E E ++ E + + + ++ +KK K EA K ++ K+KA
Sbjct: 1348 AKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKA 1407
Query: 338 KELSKPGLVMKTKD---GKKINKHKLKRLKENLEQRKKMKDRKKKAKKQTIFGTPKDLPK 394
EL K K D K K K K+ E+ KK + KKKA++ K +
Sbjct: 1408 DELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAE 1467
Query: 395 SQPFIDHVISFSILDNRIWFRNYQILSEDGALFRQQLKRLAGQKYEL----KNEEREKQK 450
D + + + +E+ + K+ A K + K EE +K
Sbjct: 1468 EAKKADEAKKKA--EEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKAD 1525
Query: 451 QTKEMLQIEPADE-NDISNILRGDILKKAKKLTAKPIDLKKESDKAETRATLTEKKKIKE 509
+ K+ + + ADE + D LKKA++L K E K +K +E
Sbjct: 1526 EAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEE 1585
Query: 510 AFKMMKKQKEKAKELSKPGLVMKTKDGKKINKHKLK--RLKENLEQRKKMKDRKKKAKKQ 567
A K + + E+ +L + MK ++ KK + K+K LK+ E++KK++ KKK ++
Sbjct: 1586 AKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEE 1645
Score = 39.0 bits (90), Expect = 0.009
Identities = 67/295 (22%), Positives = 121/295 (41%), Gaps = 20/295 (6%)
Query: 290 KNEEREKQKQTKEMLQIEPADENDISNILQKKKIKEAFKMMKKQKEKAKELSKPGLVMKT 349
K +E +K ++ K+ + + E KKK +EA K K+KA+E K K
Sbjct: 1291 KADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKA 1350
Query: 350 KDGKKINKHKLKRLKENLEQRKKMKDRKK--KAKKQTIFGTPKDLPKSQPFIDHVISFSI 407
+ ++ + K ++KK + +KK AKK+ D K + D + +
Sbjct: 1351 EAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADEL 1410
Query: 408 LDNRIWFRNYQILSEDGALFRQ--QLKRLAGQKY---ELKNEEREKQKQTKEMLQIEPAD 462
+ + ++ + K+ A + E K + E +K + + E A
Sbjct: 1411 KKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAK 1470
Query: 463 ENDISNILRGDILKKAKKLTAKPIDLKKESDKAETRATLTEKKKIKEAFKMMKKQK---- 518
+ D + + + KKA + K + KK++D+A+ A KKK EA K + +K
Sbjct: 1471 KADEAK-KKAEEAKKADEAKKKAEEAKKKADEAKKAAE--AKKKADEAKKAEEAKKADEA 1527
Query: 519 ------EKAKELSKPGLVMKTKDGKKINKHKLKRLKENLEQRKKMKDRKKKAKKQ 567
+KA E K K + KK + K K+ E+ KK ++ K A ++
Sbjct: 1528 KKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRK 1582
Score = 37.8 bits (87), Expect = 0.020
Identities = 59/281 (20%), Positives = 111/281 (39%), Gaps = 28/281 (9%)
Query: 290 KNEEREKQKQTKEMLQIEPADENDISNILQKKKIKEAFKMMKKQKEKAKELSKPGLVMKT 349
EE +K ++ + +I +E +++ +++ +A ++ KA EL K K
Sbjct: 1238 DAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKA-----EEARKADELKKAEEKKKA 1292
Query: 350 KDGKKIN-KHKLKRLKENLEQRKKMKDRKKKAKKQTIFGTPKDLPKSQPFIDHVISFSIL 408
+ KK K K K+ E+ KK + KKKA++ K +
Sbjct: 1293 DEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAK---------KKADAAKKKAEEAKK 1343
Query: 409 DNRIWFRNYQILSEDGALFRQQLKRLAGQKYELKNEEREKQKQTKEMLQIEPADENDISN 468
+ +++ ++ + +K E K + +K+ +E + + A + +
Sbjct: 1344 AAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEED 1403
Query: 469 ILRGDILKKAKKLTAKPIDLKK---ESDKAETRATLTEKKKIKEAFKMMKKQKEKAKELS 525
+ D LKKA K + KK E KA+ E+ K + K ++ +KA+E
Sbjct: 1404 KKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAK 1463
Query: 526 KPGLVMKTKDGKKINKHKLKRLKENLEQRKKMKDRKKKAKK 566
K K K K+ E+ KK + KKKA++
Sbjct: 1464 K----------KAEEAKKADEAKKKAEEAKKADEAKKKAEE 1494
Score = 37.4 bits (86), Expect = 0.026
Identities = 65/304 (21%), Positives = 118/304 (38%), Gaps = 31/304 (10%)
Query: 278 QLKRLAGQKYELKNEEREKQKQTKEMLQIEPADENDISNILQK----KKIKEAFKMMKKQ 333
++ A ++ +K EE K + K+ + + ADE + +K KK E K +
Sbjct: 1261 RMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEA 1320
Query: 334 KEKAKELSKPGLVMKTKDGKKINKHKLKRLKENLEQRK-KMKDRKKKAKKQTIFGTPKDL 392
K+KA+E K K K + + + + + + + K +A ++ K
Sbjct: 1321 KKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKA 1380
Query: 393 PKSQPFIDHVISFSILDNRIWFRNYQILSEDGALFRQQLKRLAGQKY---ELKNEEREKQ 449
++ + + +E+ +LK+ A K E K + EK+
Sbjct: 1381 DAAKKKAEEKKKADEAKKK---------AEEDKKKADELKKAAAAKKKADEAKKKAEEKK 1431
Query: 450 KQTKEMLQIEPADENDISNILRGDILKKAKKLTAKPIDLKKESDKA----ETRATLTEKK 505
K + + E A + D KK + K + KK++++A E + E K
Sbjct: 1432 KADEAKKKAEEAK--------KADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAK 1483
Query: 506 KIKEAFKMMKKQKEKAKELSKPGLVMKTKD--GKKINKHKLKRLKENLEQRKKMKDRKKK 563
K EA K ++ K+KA E K K D K K K+ E +K + +K +
Sbjct: 1484 KADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAE 1543
Query: 564 AKKQ 567
KK+
Sbjct: 1544 EKKK 1547
Score = 35.9 bits (82), Expect = 0.079
Identities = 51/254 (20%), Positives = 102/254 (40%), Gaps = 8/254 (3%)
Query: 321 KKIKEAFKMMKKQK----EKAKELSKPGLVMKTKDGKKINKHKLKRLKENLEQRKKMKDR 376
KK + A K + +K KA++ K K ++ +K + + + E KK ++
Sbjct: 1176 KKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEA 1235
Query: 377 KKKAKKQTIFGTPKDLPKSQPFIDHVISFSILDNRIWFRNYQILSEDGALFRQQLKRLAG 436
KK A++ ++ + + F + ++ +++ ++ K
Sbjct: 1236 KKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEA 1295
Query: 437 QKYELKNEEREKQKQTKEMLQIEPADENDISNILRGDILKKAKKLTAKPIDLKKESDKAE 496
+K E K + E +K+ +E + + A + + D KK + K + K +A
Sbjct: 1296 KKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAA 1355
Query: 497 TRATLTEKKKIKEAFKMMKKQKEKAKELSKPGLVMKTKDGKKI----NKHKLKRLKENLE 552
++K + A K ++ K+KA K K D K +K K LK+
Sbjct: 1356 ADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAA 1415
Query: 553 QRKKMKDRKKKAKK 566
+KK + KKKA++
Sbjct: 1416 AKKKADEAKKKAEE 1429
Score = 34.3 bits (78), Expect = 0.24
Identities = 61/278 (21%), Positives = 111/278 (39%), Gaps = 23/278 (8%)
Query: 290 KNEEREKQKQTKEMLQIEPADENDISNILQKKKIKEAFKMMKKQKEKAKELSKPGLVMKT 349
K EE +K + K+ + E + KK EA K ++ +KA E K K
Sbjct: 1439 KAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEA-KKKAEEAKKADEAKK-----KA 1492
Query: 350 KDGKKINKHKLKRLKENLEQRKKMKDRKKKAKKQTIFGTPKDLPKSQPFIDHVISFSILD 409
++ KK K K+ E +KK + KK + + K + D
Sbjct: 1493 EEAKK----KADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKA--DEAKKAEEKK 1546
Query: 410 NRIWFRNYQILSEDGALFRQQLKRLAGQKYELKNEEREKQKQTKEMLQIEPADENDISNI 469
+ + L + + + + A + + + E+ K+ +E E +
Sbjct: 1547 KADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKK 1606
Query: 470 LRGDILKKAKKLTAKPIDLKKESDKAETRATLTEKKKIKEAFKMMKKQKEKAKELSKPGL 529
++ + KKA++ K +LKK + EKKK+++ K ++K+KA+EL K
Sbjct: 1607 MKAEEAKKAEEAKIKAEELKKAEE---------EKKKVEQLKKKEAEEKKKAEELKKAEE 1657
Query: 530 VMKTKDGKKINKHKLKRLKENLEQRKKMKDRKKKAKKQ 567
K K K + K+ E+ KK ++ +KKA +
Sbjct: 1658 ENKIK--AAEEAKKAEEDKKKAEEAKKAEEDEKKAAEA 1693
Score = 32.0 bits (72), Expect = 1.2
Identities = 35/134 (26%), Positives = 57/134 (42%), Gaps = 8/134 (5%)
Query: 440 ELKNEEREKQKQTKEMLQIEPADENDISNILRGDILKKA----KKLTAKPIDLKKESDKA 495
E NEE K ++ + + D LKKA K AK + KK++D+A
Sbjct: 1248 ERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEA 1307
Query: 496 ETRATLTEKKKIKEAFKMMKKQKEKAKELSKPGLVMKTKD--GKKINKHKLKRLKENLEQ 553
+ +A E KK EA K ++ K+KA K K K + + E+
Sbjct: 1308 KKKA--EEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEK 1365
Query: 554 RKKMKDRKKKAKKQ 567
+ + +K++AKK+
Sbjct: 1366 AEAAEKKKEEAKKK 1379
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 39.6 bits (93), Expect = 0.004
Identities = 50/282 (17%), Positives = 98/282 (34%), Gaps = 27/282 (9%)
Query: 288 ELKNEEREKQKQTKEMLQIEPAD--ENDISNILQKKKIKEAFKMMKKQKEKAKELSKPGL 345
+L E +K+K+ +++ P D D+ K +EA + ++ +EK
Sbjct: 1106 KLNAELEKKEKELEKLKNTTPKDMWLEDL------DKFEEALEEQEEVEEKEI------- 1152
Query: 346 VMKTKDGKKINKHKLKRLKENLEQRKKMKDRKKKAKKQTIFGTPKDLPKSQPFIDHVISF 405
K + K K K +L++ ++K+ K +K A K + + +
Sbjct: 1153 -AKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDD 1211
Query: 406 SILDNRIWFRNYQILSEDGALFRQQLKRLAGQKYELKNEEREKQKQTKEMLQIEPADEND 465
+ + + Q+ K + + +R K K+ E DE
Sbjct: 1212 KPDNK----------KSNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFS 1261
Query: 466 ISNILRGDILKKAKKLTAKPIDLKKESDKAETRATLTEKKKIKEAFKMMKKQKEKAKELS 525
++ + K A K + K + K K +KK+ E +
Sbjct: 1262 SDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPDGESNGGSKPSSPTKKKVKKRLEGSLAAL 1321
Query: 526 KPGLVMKTKDG-KKINKHKLKRLKENLEQRKKMKDRKKKAKK 566
K + K KK +K ++K+ + R + RKKK+
Sbjct: 1322 KKKKKSEKKTARKKKSKTRVKQASASQSSRLLRRPRKKKSDS 1363
Score = 31.6 bits (72), Expect = 1.7
Identities = 45/314 (14%), Positives = 107/314 (34%), Gaps = 29/314 (9%)
Query: 277 QQLKRLAGQKYELKNEEREKQKQTKEMLQIEPADENDISNILQKKKIKEAF--------- 327
++LK+L +++ +++ ++ +E E DE D + ++ ++
Sbjct: 1038 KELKKLGYVRFKDIIKKKSEKITAEEEEGAEEDDEADDEDDEEELGAAVSYDYLLSMPIW 1097
Query: 328 --------KMMKKQKEKAKELSKPGLVMKTKDGKKINKHKLKRLKENLEQRKKMKDRKKK 379
K+ + ++K KEL K +K K + L + +E LE+++++++++
Sbjct: 1098 SLTKEKVEKLNAELEKKEKELEK----LKNTTPKDMWLEDLDKFEEALEEQEEVEEKEIA 1153
Query: 380 AKKQTIFGTPKDLPKSQPFIDHVISFSILDNRIWFRNYQILSEDGALFRQQLKRLAGQKY 439
+++ T K + + + + KR K
Sbjct: 1154 KEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKP 1213
Query: 440 ELKNEEREKQKQTKEMLQIE-PADENDISNILRGDILKKAKKLT----AKPIDLKKESDK 494
+ K Q + Q P + + + K+ + + + + +
Sbjct: 1214 DNKKSNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKN 1273
Query: 495 AETRATLT--EKKKIKEAFKMMKKQKEKAKELSKPGLVMKTKDGKKINKHKLKRLKENLE 552
A R + + K +K V K +G K K+ ++
Sbjct: 1274 APKRVSAVQYSPPPPSKRPDGESNGGSKPSSPTKKK-VKKRLEGSLAALKKKKKSEKKTA 1332
Query: 553 QRKKMKDRKKKAKK 566
++KK K R K+A
Sbjct: 1333 RKKKSKTRVKQASA 1346
>gnl|CDD|218311 pfam04888, SseC, Secretion system effector C (SseC) like family.
SseC is a secreted protein that forms a complex together
with SecB and SecD on the surface of Salmonella. All
these proteins are secreted by the type III secretion
system. Many mucosal pathogens use type III secretion
systems for the injection of effector proteins into
target cells. SecB, SseC and SecD are inserted into the
target cell membrane. where they form a small pore or
translocon. In addition to SseC, this family includes
the bacterial secreted proteins PopB, PepB, YopB and
EspD which are thought to be directly involved in pore
formation, and type III secretion system translocon.
Length = 303
Score = 37.1 bits (86), Expect = 0.017
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 480 KLTAKPIDLKKESDKAET-RATLTEKKKIKEAFKMMKKQKEKAKELSKPGLVMK 532
+L +K + + +S + RA ++KK +E + +KK EKA+E K G+ K
Sbjct: 7 ELISKLAEKQAKSKLQQLERARDKQEKKAEEYQEQIKKAIEKAEEAKKSGIFSK 60
Score = 31.3 bits (71), Expect = 1.1
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 319 QKKKIKEAFKMMKKQKEKAKELSKPGLVMK 348
Q+KK +E + +KK EKA+E K G+ K
Sbjct: 31 QEKKAEEYQEQIKKAIEKAEEAKKSGIFSK 60
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 36.7 bits (86), Expect = 0.039
Identities = 25/109 (22%), Positives = 59/109 (54%), Gaps = 2/109 (1%)
Query: 277 QQLKRLAGQKY-ELKNEEREKQKQTKEMLQIEPADENDISNILQKKKIKEAFKMMKKQKE 335
++L+R QK E + +E +K +E+ + + + + +L++ + KEA + +K+ K+
Sbjct: 526 EELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAE-KEAQQAIKEAKK 584
Query: 336 KAKELSKPGLVMKTKDGKKINKHKLKRLKENLEQRKKMKDRKKKAKKQT 384
+A E+ K ++ + H+L ++ L + + K++KKK +K+
Sbjct: 585 EADEIIKELRQLQKGGYASVKAHELIEARKRLNKANEKKEKKKKKQKEK 633
Score = 32.9 bits (76), Expect = 0.54
Identities = 31/127 (24%), Positives = 57/127 (44%), Gaps = 17/127 (13%)
Query: 442 KNEEREKQKQTKEMLQIEPADENDISNILRGDILKKAKKLTAKPIDLKKESDKAETRATL 501
EE E++ + K E A+ L + K ++L K L++E DK A
Sbjct: 524 SLEELERELEQK----AEEAEA------LLKEAEKLKEELEEKKEKLQEEEDKLLEEAEK 573
Query: 502 TEKKKIKEAFKMMKKQKEKAKELSKPGLVMKTKDGKKINKHKLKRLKENLEQRKKMKDRK 561
++ IKEA K++A E+ K ++ + H+L ++ L + + K++K
Sbjct: 574 EAQQAIKEA-------KKEADEIIKELRQLQKGGYASVKAHELIEARKRLNKANEKKEKK 626
Query: 562 KKAKKQT 568
KK +K+
Sbjct: 627 KKKQKEK 633
Score = 29.8 bits (68), Expect = 5.3
Identities = 25/111 (22%), Positives = 53/111 (47%), Gaps = 12/111 (10%)
Query: 429 QQLKRLAGQKYE-----LKNEEREKQKQTKEMLQIEPADENDISNILRG--DILKKAKKL 481
++L+R QK E LK E+ K++ ++ +++ ++ + + +K+AKK
Sbjct: 526 EELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKE 585
Query: 482 TAKPI----DLKKESDKAETRATLTEK-KKIKEAFKMMKKQKEKAKELSKP 527
+ I L+K + L E K++ +A + +K+K+K KE +
Sbjct: 586 ADEIIKELRQLQKGGYASVKAHELIEARKRLNKANEKKEKKKKKQKEKQEE 636
>gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional.
Length = 333
Score = 36.0 bits (83), Expect = 0.046
Identities = 25/90 (27%), Positives = 36/90 (40%)
Query: 476 KKAKKLTAKPIDLKKESDKAETRATLTEKKKIKEAFKMMKKQKEKAKELSKPGLVMKTKD 535
K +KK AK K++ K +A KK K+A K K +KA + + K
Sbjct: 225 KVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAAKKAAKAAAKAAKG 284
Query: 536 GKKINKHKLKRLKENLEQRKKMKDRKKKAK 565
K K K K K+ ++ K AK
Sbjct: 285 AAKATKGKAKAKKKAGKKAAAGSKAKATAK 314
Score = 31.8 bits (72), Expect = 0.86
Identities = 27/97 (27%), Positives = 36/97 (37%), Gaps = 8/97 (8%)
Query: 476 KKAKKLTAKPIDLKKESDKAETRATLTEKKKIKEAFKMMKK-----QKEKAKELSKPGLV 530
KKA K AK K++ K +A K +K+A K K K AK
Sbjct: 239 KKAAKTAAKAA---KKAKKTAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGKAKA 295
Query: 531 MKTKDGKKINKHKLKRLKENLEQRKKMKDRKKKAKKQ 567
K K K K + ++ K K KK KK+
Sbjct: 296 KKKAGKKAAAGSKAKATAKAPKRGAKGKKAKKVTKKR 332
Score = 31.4 bits (71), Expect = 1.2
Identities = 28/91 (30%), Positives = 34/91 (37%)
Query: 476 KKAKKLTAKPIDLKKESDKAETRATLTEKKKIKEAFKMMKKQKEKAKELSKPGLVMKTKD 535
K KK S K + ++ KK K A K KK K+ AK+ K K
Sbjct: 211 GAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKKA 270
Query: 536 GKKINKHKLKRLKENLEQRKKMKDRKKKAKK 566
KK K K K + K KKKA K
Sbjct: 271 AKKAAKAAAKAAKGAAKATKGKAKAKKKAGK 301
Score = 29.9 bits (67), Expect = 3.6
Identities = 34/99 (34%), Positives = 43/99 (43%), Gaps = 7/99 (7%)
Query: 476 KKAKKLTAKPIDLKKESDKAETRATLTEKKKI-------KEAFKMMKKQKEKAKELSKPG 528
KKA K A KK S KA++ A KKK K+A K K +KAK+ +K
Sbjct: 200 KKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKA 259
Query: 529 LVMKTKDGKKINKHKLKRLKENLEQRKKMKDRKKKAKKQ 567
L K KK K K + + K K KAKK+
Sbjct: 260 LKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGKAKAKKK 298
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 35.0 bits (81), Expect = 0.12
Identities = 20/97 (20%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Query: 289 LKNEEREKQKQTKEMLQIEPADENDISNILQKKKIK-EAFKMMKKQKEKAKELSKPGLVM 347
+ EE+E K+ K + +++ +E + + +K K + K+Q++K + GL
Sbjct: 555 REKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAKIPPAEFFKRQEDKYSAFDETGLPT 614
Query: 348 KTKDGKKINKHKLKRLKENLEQRKKMKDRKKKAKKQT 384
DG++I+K + K+L + +++ K+ + ++
Sbjct: 615 HDADGEEISKKERKKLSKEYDKQAKLHEEYLAKGGKS 651
Score = 31.9 bits (73), Expect = 0.97
Identities = 25/100 (25%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 469 ILRGDILKKAKKLTAKPIDLKKESDKAETRATLTEKKKIKEAFKMMKKQKEKAKELSKPG 528
+ R K+A K + LKK+ +K + EK KI A + K+Q++K + G
Sbjct: 553 LQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAKIPPA-EFFKRQEDKYSAFDETG 611
Query: 529 LVMKTKDGKKINKHKLKRLKENLEQRKKMKDRKKKAKKQT 568
L DG++I+K + K+L + +++ K+ + ++
Sbjct: 612 LPTHDADGEEISKKERKKLSKEYDKQAKLHEEYLAKGGKS 651
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell
envelope biogenesis, outer membrane].
Length = 387
Score = 34.2 bits (78), Expect = 0.19
Identities = 27/151 (17%), Positives = 56/151 (37%), Gaps = 6/151 (3%)
Query: 423 DGALFRQQLKRLAGQKYELKNEEREKQK----QTKEMLQIEPADENDISN--ILRGDILK 476
D QQ R+ Q+ K E++++K +E+ + A++ + R +
Sbjct: 56 DPGAVVQQYGRIQSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQE 115
Query: 477 KAKKLTAKPIDLKKESDKAETRATLTEKKKIKEAFKMMKKQKEKAKELSKPGLVMKTKDG 536
+ K+ + E + E +A ++ K+A K +A +L K +
Sbjct: 116 QQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEE 175
Query: 537 KKINKHKLKRLKENLEQRKKMKDRKKKAKKQ 567
+ K E +KK + K A ++
Sbjct: 176 AAKAAEEAKAKAEAAAAKKKAEAEAKAAAEK 206
Score = 33.0 bits (75), Expect = 0.44
Identities = 25/115 (21%), Positives = 49/115 (42%), Gaps = 17/115 (14%)
Query: 271 DGALFRQQLKRLAGQKYELKNEEREKQK----QTKEMLQIEPADENDISNILQKKKIKEA 326
D QQ R+ Q+ K E++++K +E+ + A++ E
Sbjct: 56 DPGAVVQQYGRIQSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQ-------------ER 102
Query: 327 FKMMKKQKEKAKELSKPGLVMKTKDGKKINKHKLKRLKENLEQRKKMKDRKKKAK 381
K ++K++ KA+E K + + + + + + K EQ+KK + K KA
Sbjct: 103 LKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAA 157
Score = 31.5 bits (71), Expect = 1.4
Identities = 29/146 (19%), Positives = 58/146 (39%), Gaps = 8/146 (5%)
Query: 428 RQQLKRLAGQKYELKNEEREKQKQTKEMLQIEPADENDISNILRGDILKKAKKLTAKPID 487
R + + Q E + + + +QKQ +E + A++ + + +A KL A +
Sbjct: 110 RLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAA-E 168
Query: 488 LKKESDK-------AETRATLTEKKKIKEAFKMMKKQKEKAKELSKPGLVMKTKDGKKIN 540
KK++++ A+ +A KK EA +K KA+ +K K + +
Sbjct: 169 AKKKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEK 228
Query: 541 KHKLKRLKENLEQRKKMKDRKKKAKK 566
K+ + K K A++
Sbjct: 229 AAAEKKKAAAKAKADKAAAAAKAAER 254
Score = 29.9 bits (67), Expect = 4.2
Identities = 28/115 (24%), Positives = 48/115 (41%), Gaps = 6/115 (5%)
Query: 269 SEDGALFRQQLKRLAGQKYELKNEEREKQKQTKEMLQIEPADENDISNILQKKKIKEAFK 328
+E L + + +RL Q+ + + EE EKQ Q L+ + +E ++KK EA K
Sbjct: 98 AEQERLKQLEKERLKAQEQQKQAEEAEKQAQ----LEQKQQEEQARKAAAEQKKKAEAAK 153
Query: 329 MMKKQKEKAKELSKPGLVMKTKDGKKINKHKLKRLKENLEQRKKMKDRKKKAKKQ 383
K +A +L K + + K E +KK + K A ++
Sbjct: 154 --AKAAAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEK 206
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 34.4 bits (79), Expect = 0.21
Identities = 42/299 (14%), Positives = 124/299 (41%), Gaps = 28/299 (9%)
Query: 289 LKNEEREKQKQTKEMLQIEPADENDISNILQKKKIKEAFKMMKKQKEKAKELSKPGLVMK 348
LK++ +E+++ E+ +E ++ + +KE K K + E+ + L+
Sbjct: 149 LKSKPKERKEILDELFGLEKYEK-------LSELLKEVIKEAKAKIEELEGQLSE-LLED 200
Query: 349 TKDGKKINKHKLKRLKENLEQRKKMKDRKKKAK-------KQTIFGTPKDLPKSQPFIDH 401
+D + + +LK LK+ E +++ ++ + + + + + L + + +
Sbjct: 201 IEDLLEALEEELKELKKLEEIQEEQEEEELEQEIEALEERLAELEEEKERLEELKARLLE 260
Query: 402 VISFSILDNRIWFRNYQILSEDGALFRQQLKRLAGQK---YELKNEEREKQKQTKEMLQI 458
+ S + +I + L ++++RL + EL+ E + +E+ ++
Sbjct: 261 IESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEEL 320
Query: 459 EPADENDISNI---------LRGDILKKAKKLTAKPIDLKKESDKAETRATLTEKKKIKE 509
++ + L ++ + A++ L++ + E R EK+ K
Sbjct: 321 LEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKA 380
Query: 510 AFKMMKKQKEKAKELSKPGLVMKTKDGKKINKHKLKRLKENLEQR-KKMKDRKKKAKKQ 567
++ + ++ + + + + + +L++ E LE+ +++++ KK ++Q
Sbjct: 381 LERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQ 439
>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein. This family
consists of several Borrelia P83/P100 antigen proteins.
Length = 489
Score = 32.7 bits (74), Expect = 0.58
Identities = 23/92 (25%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 477 KAKKLTAKPIDLK-KESDKAETRATLTEKKKIKEAFKMMKKQKEKAKELSKPGLVMKTKD 535
K + + +D K ++DKA+ +A + K+ ++ +KQ+E AK L KP K+
Sbjct: 213 KRAQQLKEELDKKQIDADKAQQKADFAQDNADKQRDEVRQKQQE-AKNLPKPADTSSPKE 271
Query: 536 GKKINKHKLKRLKENLEQRKKMKDRKKKAKKQ 567
K++ +++ + +++ + KK + KAK
Sbjct: 272 DKQVAENQKREIEKAQIEIKKNDEEALKAKDH 303
Score = 29.6 bits (66), Expect = 4.9
Identities = 26/108 (24%), Positives = 49/108 (45%), Gaps = 8/108 (7%)
Query: 292 EEREKQKQTKEMLQI-EPADENDISNILQKKKIKEAFKMMKKQK-------EKAKELSKP 343
+ERE Q+ K Q+ E D+ I ++K A KQ+ ++AK L KP
Sbjct: 204 KERESQEDAKRAQQLKEELDKKQIDADKAQQKADFAQDNADKQRDEVRQKQQEAKNLPKP 263
Query: 344 GLVMKTKDGKKINKHKLKRLKENLEQRKKMKDRKKKAKKQTIFGTPKD 391
K+ K++ +++ + +++ + KK + KAK F ++
Sbjct: 264 ADTSSPKEDKQVAENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQE 311
>gnl|CDD|224340 COG1422, COG1422, Predicted membrane protein [Function unknown].
Length = 201
Score = 31.9 bits (73), Expect = 0.59
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 11/67 (16%)
Query: 314 ISNILQK-----KKIKEAFKMMKKQKEKAKELSKPGLVMKTKDGKKINKHKLKRLKENLE 368
ILQK +K+KE KMMK+ +++ +E + G D KK+ K + K+++ +
Sbjct: 60 YITILQKLLIDQEKMKELQKMMKEFQKEFREAQESG------DMKKLKKLQEKQMEMMDD 113
Query: 369 QRKKMKD 375
QR+ MK
Sbjct: 114 QRELMKM 120
Score = 30.4 bits (69), Expect = 2.1
Identities = 19/59 (32%), Positives = 36/59 (61%), Gaps = 6/59 (10%)
Query: 501 LTEKKKIKEAFKMMKKQKEKAKELSKPGLVMKTKDGKKINKHKLKRLKENLEQRKKMKD 559
L +++K+KE KMMK+ +++ +E + G D KK+ K + K+++ +QR+ MK
Sbjct: 68 LIDQEKMKELQKMMKEFQKEFREAQESG------DMKKLKKLQEKQMEMMDDQRELMKM 120
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains
separated by a hinge in the middle. The eukaryotic SMC
proteins form two kind of heterodimers: the SMC1/SMC3
and the SMC2/SMC4 types. These heterodimers constitute
an essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 32.6 bits (74), Expect = 0.60
Identities = 43/288 (14%), Positives = 110/288 (38%), Gaps = 15/288 (5%)
Query: 294 REKQKQTKEMLQIEPADENDISNILQKKKIKEAFKMMKKQKEKAKELSKPGLVMKTKDGK 353
REK+K+ + + ++ EN I+ +++K +K+Q +KA E + ++ ++
Sbjct: 167 REKRKKKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEN 226
Query: 354 KINKHKLKRLKENL---------EQRKKMKDRKKKAKKQTIFGTPKDL----PKSQPFID 400
+ LK +E + EQ + +++ K++ I K + +
Sbjct: 227 LLYLDYLKLNEERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQE 286
Query: 401 HVISFSILDNRIWFRNYQILSEDGALFRQQLKRLAGQKYELKNEEREKQKQTKEMLQIEP 460
+ + L ++LK + ++ + +E +K+K+ E L+ E
Sbjct: 287 EELKLLAKEEEELKSELLKLERRKVDDEEKLKE-SEKELKKLEKELKKEKEEIEELEKEL 345
Query: 461 ADENDISNILRGDILKKAKKLTAKPIDLKKESDKAETRATLTEKKKIKEAFKMMKKQKEK 520
E +I + ++ +KL K L++E + + K + ++ + E+
Sbjct: 346 -KELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKNEE 404
Query: 521 AKELSKPGLVMKTKDGKKINKHKLKRLKENLEQRKKMKDRKKKAKKQT 568
KE + + ++ + K + + + K +++
Sbjct: 405 EKEAKLLLELSEQEEDLLKEEKKEELKIVEELEESLETKQGKLTEEKE 452
>gnl|CDD|234252 TIGR03545, TIGR03545, TIGR03545 family protein. This model
represents a relatively rare but broadly distributed
uncharacterized protein family, distributed in 1-2
percent of bacterial genomes, all of which have outer
membranes. In many of these genomes, it is part of a
two-gene pair.
Length = 555
Score = 32.4 bits (74), Expect = 0.80
Identities = 35/195 (17%), Positives = 67/195 (34%), Gaps = 19/195 (9%)
Query: 291 NEEREKQKQTKEMLQIEPADENDISNILQKKKIKEAFKMMKKQKEKAKELSK------PG 344
ER E PA K++ K + Q + L K
Sbjct: 109 GTERSTSGAVPETKDETPASAPSSI----KEQKSSELKKVDSQLPDPRALLKGEDLKTVE 164
Query: 345 LVMKTKDGKKINKHKLKRLKENLEQRKKMKDRKKKAK--KQTIFGTPKDLPKSQPFIDHV 402
+ + K + K K+ K++L ++ +++ KK+ + K+ P +L K + D +
Sbjct: 165 TAEEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKL 224
Query: 403 ISFSILDNRIWFRNYQILSEDGALFRQQLKRLAGQKYELKNEEREKQKQTKEMLQIEPAD 462
D Q + + K+L ELK + K+ + I+ D
Sbjct: 225 KKEGKAD-------KQKIKSAKNDLQNDKKQLKADLAELKKAPQNDLKRLENKYAIKSGD 277
Query: 463 ENDISNILRGDILKK 477
+ + L G ++K
Sbjct: 278 LKNFAVDLFGPEIRK 292
>gnl|CDD|235549 PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.
Length = 619
Score = 32.1 bits (74), Expect = 0.82
Identities = 36/194 (18%), Positives = 70/194 (36%), Gaps = 25/194 (12%)
Query: 334 KEKAKELSKPGLVMKTKDGKKINKHKLKRLKENLEQRKKMKDRKKKAKKQTIFGTPKDLP 393
A E P V++ KL++ +E + + + +K ++ + K L
Sbjct: 208 SLAADESELPEKVLEKFKALAKQYKKLRKAQEKKVEGRLAQHKKYAKLREKLKEELKSLR 267
Query: 394 KSQPFIDHVISFSILDNRIWFRNYQILSEDGALFRQQLKRLAGQKYELKNEEREKQKQTK 453
+ ID L E R KR+ GQ+ EL + K
Sbjct: 268 LTSKQID------------------ELVEQ---LRDINKRVRGQERELLRLVERLKMPRK 306
Query: 454 EMLQIEPADENDISNILRGDILKKAKKLTAKPI--DLKKESDKAETRATLT--EKKKIKE 509
+ L++ +E DI+ + + K + ++KK + E T +++KE
Sbjct: 307 DFLKLFQGNELDITWLEKEIASGKPWSEFLVRVYDEIKKLQQELEAIEEETGLTIEELKE 366
Query: 510 AFKMMKKQKEKAKE 523
+ + K + KA+
Sbjct: 367 INRQISKGEAKARR 380
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y. Members of this family are
RNase Y, an endoribonuclease. The member from Bacillus
subtilis, YmdA, has been shown to be involved in
turnover of yitJ riboswitch [Transcription, Degradation
of RNA].
Length = 514
Score = 32.2 bits (74), Expect = 0.89
Identities = 38/201 (18%), Positives = 84/201 (41%), Gaps = 44/201 (21%)
Query: 326 AFKMMKKQKEKAKELSKPGLVMKTKDGKKINKHKLKRLKENLEQRKKMKDRKKKAKKQTI 385
++ +K+ A+EL+K + K+ + + K L KE + + + +R+ K ++ +
Sbjct: 19 RKRIAEKKLGSAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNEL 78
Query: 386 FGTPKDLPKSQPFIDHVISFSILDNRIWFRNYQILSEDGALFRQQLKRLAGQKYELKNEE 445
L+ R+ R + L ++ + L ++ EL N+E
Sbjct: 79 --------------------QRLERRLLQRE-ETLDRKMESLDKKEENLEKKEKELSNKE 117
Query: 446 REKQKQTKEMLQIEPADENDISNILRGDILKKAKKLT---AKPIDLKKESDKAETRATLT 502
+ ++ +E+ ++ + L++ LT AK I L++
Sbjct: 118 KNLDEKEEELEELIAEQR---------EELERISGLTQEEAKEILLEE-----------V 157
Query: 503 EKKKIKEAFKMMKKQKEKAKE 523
E++ EA K++K+ +E+AKE
Sbjct: 158 EEEARHEAAKLIKEIEEEAKE 178
>gnl|CDD|223250 COG0172, SerS, Seryl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 429
Score = 31.8 bits (73), Expect = 1.1
Identities = 23/106 (21%), Positives = 50/106 (47%), Gaps = 10/106 (9%)
Query: 294 REKQKQTKEMLQIEPADENDISNILQ-----KKKIKEAFKMMKKQKEKAKELSKPGLVMK 348
RE +E L+ D D+ +L+ +K ++E ++ ++ E +KE+ G +K
Sbjct: 8 RENPDAVREKLKKRGGDALDVDKLLELDEERRKLLRELEELQAERNELSKEI---GRALK 64
Query: 349 TKDGKKIN-KHKLKRLKENLEQRKKMKDRKKKAKKQTIFGTPKDLP 393
+ ++K LKE L++ + + +A+ T+ T ++P
Sbjct: 65 RGEDDAEELIAEVKELKEKLKELEA-ALDELEAELDTLLLTIPNIP 109
>gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207). This
family is found in eukaryotes; it has several conserved
tryptophan residues. The function is not known.
Length = 261
Score = 31.2 bits (71), Expect = 1.3
Identities = 22/109 (20%), Positives = 53/109 (48%), Gaps = 2/109 (1%)
Query: 276 RQQLKRLAGQKYELKNEEREKQKQTKEMLQIEPADENDISNILQKKKIKEAFKMMKKQKE 335
Q+ K+L E + +EREK+++ E+ Q + ++K + A + K K+
Sbjct: 98 AQRQKKLQKLLEEKQKQEREKEREEAELRQRLA--KEKYEEWCRQKAQQAAKQRTPKHKK 155
Query: 336 KAKELSKPGLVMKTKDGKKINKHKLKRLKENLEQRKKMKDRKKKAKKQT 384
+A E + L K + +++ + K+ + E +K + ++K+ +++
Sbjct: 156 EAAESASSSLSGSAKPERNVSQEEAKKRLQEWELKKLKQQQQKREEERR 204
>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional.
Length = 413
Score = 31.2 bits (71), Expect = 1.5
Identities = 29/119 (24%), Positives = 47/119 (39%), Gaps = 4/119 (3%)
Query: 451 QTKEMLQIEPADENDISNILRGDILKKAKKLTAKPIDLKKESDKAETRATLTEKKKIKEA 510
Q ++ I N +L +IL + K + DK E + ++KK K+
Sbjct: 17 QKSKLQPISYIYSN--VLVLSKEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKK- 73
Query: 511 FKMMKKQKEKAKELSKPGLVMKTKDGKKINKHKLKRLKENLEQRKKMKDRKKKAKKQTV 569
K KK+K++ K + L KT K K K + K N + + A+K V
Sbjct: 74 -KKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPNEDVDNAFNKIAELAEKSNV 131
Score = 30.5 bits (69), Expect = 2.7
Identities = 23/104 (22%), Positives = 41/104 (39%), Gaps = 5/104 (4%)
Query: 283 AGQKYELKNEEREKQKQTKEMLQIEPADENDISNILQKKKIKEAFKMMKKQKEKAKELSK 342
++ E E + T + + D+N+ + KK E K KK+K++ K +
Sbjct: 34 LSKEILSTFSEEENKVATTSTKKDKKEDKNN-----ESKKKSEKKKKKKKEKKEPKSEGE 88
Query: 343 PGLVMKTKDGKKINKHKLKRLKENLEQRKKMKDRKKKAKKQTIF 386
L KT K K K + K N + + A+K ++
Sbjct: 89 TKLGFKTPKKSKKTKKKPPKPKPNEDVDNAFNKIAELAEKSNVY 132
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein. TolA couples the inner
membrane complex of itself with TolQ and TolR to the
outer membrane complex of TolB and OprL (also called
Pal). Most of the length of the protein consists of
low-complexity sequence that may differ in both length
and composition from one species to another,
complicating efforts to discriminate TolA (the most
divergent gene in the tol-pal system) from paralogs such
as TonB. Selection of members of the seed alignment and
criteria for setting scoring cutoffs are based largely
conserved operon struction. //The Tol-Pal complex is
required for maintaining outer membrane integrity. Also
involved in transport (uptake) of colicins and
filamentous DNA, and implicated in pathogenesis.
Transport is energized by the proton motive force. TolA
is an inner membrane protein that interacts with
periplasmic TolB and with outer membrane porins ompC,
phoE and lamB [Transport and binding proteins, Other,
Cellular processes, Pathogenesis].
Length = 346
Score = 31.0 bits (70), Expect = 1.6
Identities = 24/120 (20%), Positives = 51/120 (42%), Gaps = 7/120 (5%)
Query: 271 DGALFRQQLKRLAGQKYELKNEEREKQK----QTKEMLQIEPADENDISNILQKKKIKEA 326
D QQ R+ QK +E+E+QK Q +E + A++ + Q+ ++A
Sbjct: 44 DPGAVAQQANRIQQQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKA 103
Query: 327 FKMMKKQKEKAKELSKPGLVMKTKDGKKINKHK---LKRLKENLEQRKKMKDRKKKAKKQ 383
K ++ ++A+E K K K + ++ + +++ ++ K KA +
Sbjct: 104 AKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAE 163
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 31.0 bits (71), Expect = 1.9
Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Query: 474 ILKKAKKLT---AKPIDLKKESDKAETRATLTEKKKIKEAFKMMKKQKEKAKELSKPGLV 530
I K +L A ++L +E + T + KK K K KK++E+ KE K
Sbjct: 377 IFKHNPELAARLAAFLELTEEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFA 436
Query: 531 MKTKDGKKINKHKLKRLKENLEQRKKMKDRKK---KAKKQT 568
K K+ ++ + + K ++ E+ + +++++ K KKQ
Sbjct: 437 GKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKKQA 477
Score = 30.7 bits (70), Expect = 2.6
Identities = 19/83 (22%), Positives = 40/83 (48%), Gaps = 8/83 (9%)
Query: 310 DENDISNILQKKKIKEAFKMM-----KKQKEKAKELSKPGLVMKTKDGKKINKHKLKRLK 364
E +I + KK + K + KK++E+ KE K K K+ ++ + + K +
Sbjct: 395 TEEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEE 454
Query: 365 ENLEQRKKMKDRKK---KAKKQT 384
+ E+ + +++++ K KKQ
Sbjct: 455 KEEEEEEAEEEKEEEEEKKKKQA 477
>gnl|CDD|181787 PRK09343, PRK09343, prefoldin subunit beta; Provisional.
Length = 121
Score = 29.3 bits (66), Expect = 1.9
Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 429 QQLKRLAGQKYELKNEEREKQKQTKEMLQIEPADENDISNILRGDILKKAKKLTAKPIDL 488
QQL+RL QK ++ E RE K +E+ ++ D+ I I+ ++K K K +
Sbjct: 21 QQLERLLQQKSQIDLELREINKALEELEKLP--DDTPIYKIVGNLLVKVDKTKVEKELKE 78
Query: 489 KKESDKAETRATLTEKKKIKEAFKMMKKQ 517
+KE + +R ++KK++E K ++ +
Sbjct: 79 RKELLELRSRTLEKQEKKLREKLKELQAK 107
>gnl|CDD|232931 TIGR00344, alaS, alanine--tRNA ligase. The model describes
alanine--tRNA ligase. This enzyme catalyzes the reaction
(tRNAala + L-alanine + ATP = L-alanyl-tRNAala +
pyrophosphate + AMP) [Protein synthesis, tRNA
aminoacylation].
Length = 851
Score = 30.8 bits (70), Expect = 2.3
Identities = 16/123 (13%), Positives = 38/123 (30%), Gaps = 21/123 (17%)
Query: 418 QILSEDGALFRQQLKRLAGQKYELKNEEREKQKQTKEMLQIEPADENDISNILRGDILKK 477
L E + + L + E + QK+ + + + D ++ K
Sbjct: 708 DKLKELADILKVTPNELPKKIERFFEEWKALQKELESLKLKIADQKID-------ELKDK 760
Query: 478 AKKLTAKPIDLKKESDKAETRATLTEKKKIKEAFKMMKKQKEKAKELSKPGLVMKTKDGK 537
A+ + + ++ K + K +K +K + A V+ +
Sbjct: 761 AETINGVKVLVEVVDAK--------DMKSLKTMADRLKSKLGSA------IYVLASFANG 806
Query: 538 KIN 540
K+
Sbjct: 807 KVK 809
Score = 30.4 bits (69), Expect = 2.9
Identities = 15/92 (16%), Positives = 31/92 (33%), Gaps = 4/92 (4%)
Query: 266 QILSEDGALFRQQLKRLAGQKYELKNEEREKQKQTKEMLQIEPADENDISNILQKKKIKE 325
L E + + L + E + QK+ + + + I + K +
Sbjct: 708 DKLKELADILKVTPNELPKKIERFFEEWKALQKELESL--KLKIADQKIDELKDKAETIN 765
Query: 326 AFKMMKKQ--KEKAKELSKPGLVMKTKDGKKI 355
K++ + + K L +K+K G I
Sbjct: 766 GVKVLVEVVDAKDMKSLKTMADRLKSKLGSAI 797
>gnl|CDD|217834 pfam03998, Utp11, Utp11 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 239
Score = 30.0 bits (68), Expect = 2.4
Identities = 25/114 (21%), Positives = 48/114 (42%), Gaps = 4/114 (3%)
Query: 443 NEEREKQKQTKEMLQIEPADENDISNILRGDILKKAKKLTAKPIDLKKESDKAETRATLT 502
+EE +K E P + N R L+K + K + + + L
Sbjct: 130 DEEEQKSFDPAEYFDTTPELLDRRENRPRISQLEKTSLVDEKQKKKSAKKKRKLYKE-LK 188
Query: 503 EKKKIKEAFKMMKKQKEKAKELSKPGLVMKTKDGKKINKHKLKRLKENLEQRKK 556
E+K+ ++ K ++++ E +EL K G K K K + + + K ++RK+
Sbjct: 189 ERKEREKKLKKVEQRLELQRELMKKGKGKKKKIVKDKDGKVVYKWK---KERKR 239
>gnl|CDD|233410 TIGR01430, aden_deam, adenosine deaminase. This family includes
the experimentally verified adenosine deaminases of
mammals and E. coli. Other members of this family are
predicted also to be adenosine deaminase, an enzyme of
nucleotide degradation. This family is distantly related
to AMP deaminase.
Length = 324
Score = 30.4 bits (69), Expect = 2.5
Identities = 13/77 (16%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Query: 229 LLTQIFGTPKDLPKSQPFIDHVISFSI-LDNRIWF-----RNYQILSEDGALFRQQLKRL 282
+ + + + P + F++ + ++ D+ +F Y+I ++ L ++LK+L
Sbjct: 244 VALGVVKSLAEHP-LRRFLEAGVKVTLNSDDPAYFGSYLTEEYEIAAKHAGLTEEELKQL 302
Query: 283 AGQKYELKNEEREKQKQ 299
A E +++K+
Sbjct: 303 ARNALEGSFLSDDEKKE 319
>gnl|CDD|232919 TIGR00322, diphth2_R, diphthamide biosynthesis enzyme Dph1/Dph2
domain. Archaea and Eukaryotes, but not Eubacteria,
share the property of having a covalently modified
residue,
2'-[3-carboxamido-3-(trimethylammonio)propyl]histidine,
as a part of a cytosolic protein. The modified His,
termed diphthamide, is part of translation elongation
factor EF-2 and is the site for ADP-ribosylation by
diphtheria toxin. This model includes both Dph1 and Dph2
from Saccharomyces cerevisiae, although only Dph2 is
found in the Archaea (see TIGR03682). Dph2 has been
shown to act analogously to the radical SAM (rSAM)
family (pfam04055), with 4Fe-4S-assisted cleavage of
S-adenosylmethionine to create a free radical, but a
different organic radical than in rSAM.
Length = 319
Score = 30.3 bits (69), Expect = 2.7
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 503 EKKKIKEAFKMMKKQKEKAKELSKPGLVMKTKDGKKINKHKLKRLKENLEQRKK 556
E+ + + EKAK+ K G+++ T G+ +RLKE L++ K
Sbjct: 213 EEYDANKLLRRRYALIEKAKDAKKVGIIVGTLGGQG-RLELAERLKELLKKAGK 265
Score = 29.9 bits (68), Expect = 3.3
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 325 EAFKMMKK---QKEKAKELSKPGLVMKTKDGKKINKHKLKRLKENLEQRKK 372
+A K++++ EKAK+ K G+++ T G+ +RLKE L++ K
Sbjct: 216 DANKLLRRRYALIEKAKDAKKVGIIVGTLGGQG-RLELAERLKELLKKAGK 265
>gnl|CDD|235943 PRK07133, PRK07133, DNA polymerase III subunits gamma and tau;
Validated.
Length = 725
Score = 30.6 bits (69), Expect = 2.7
Identities = 37/243 (15%), Positives = 74/243 (30%), Gaps = 14/243 (5%)
Query: 290 KNEEREKQKQTKEMLQIEPADENDISNILQKKKIKEAFKMMKKQKEKAKELSKPGLVMKT 349
+E E+ + + +IE N + IKE + E + +T
Sbjct: 355 LSELEEEDENEIKFKKIEE-------NSIDNLDIKEKKIENENDIEGKSDTKNLEEGFET 407
Query: 350 KDGKKINKHKLKRLKENLEQRKKMKDRKKKAKKQTIFGTPKDLPKSQPFIDHVISFSI-- 407
KD K N + + + L + +K + P++ Q + +IS I
Sbjct: 408 KDNKNKNSSFINKTENILTNSPLKDELLEKTTEIINIENPQEFEFGQ-IGNDIISTEIAQ 466
Query: 408 LDNRIWFRNYQILSEDGALFRQQLKRLAGQKYELKNEEREKQKQTKEMLQIEPADENDIS 467
LD + + + E NE + + + + + +
Sbjct: 467 LDENQNLIDTGEFDLENNFSNSFNPENGNKIDENINETFDTSTISANLSENKTNFAQSFN 526
Query: 468 NILRGDILKKAK----KLTAKPIDLKKESDKAETRATLTEKKKIKEAFKMMKKQKEKAKE 523
N I + K T + +K K + L+ ++ I +K + E
Sbjct: 527 NKDTNLINSEIPIDLIKDTITINNSQKNVKKNGNKDYLSVEEVINLIMLAIKFHSQNQVE 586
Query: 524 LSK 526
K
Sbjct: 587 YKK 589
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 30.5 bits (70), Expect = 2.9
Identities = 20/89 (22%), Positives = 44/89 (49%), Gaps = 18/89 (20%)
Query: 479 KKLTAKPIDLKKESDK----AETRATLTEKKKIKEAFKMMKKQKEKA-KELSKPGLVMKT 533
K AK + ++E+ + A+ A +K+ + EA + + K + + KEL
Sbjct: 27 KIAEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKEL--------- 77
Query: 534 KDGKKINKHKLKRLKENLEQRKKMKDRKK 562
+ +++L++L++ L Q+++ DRK
Sbjct: 78 ----RERRNELQKLEKRLLQKEENLDRKL 102
>gnl|CDD|204404 pfam10145, PhageMin_Tail, Phage-related minor tail protein.
Members of this family are found in putative phage tail
tape measure proteins.
Length = 201
Score = 29.6 bits (67), Expect = 3.2
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 323 IKEAF-KMMKKQKEKAKELSKPGLVMKTKDGKKINKHKLKRLKENLEQRKKMKDRKKKAK 381
+K ++ K KE AK L K GL D K K L+E ++ KK+ D +K A
Sbjct: 138 LKNFLARLTKPSKEAAKALKKLGL--SFTDAKGKMKSLPDILEELQKKLKKLTDAQKAAA 195
Query: 382 KQTIFG 387
+ +FG
Sbjct: 196 LKALFG 201
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein. Function of MutS2 is
unknown. It should not be considered a DNA mismatch
repair protein. It is likely a DNA mismatch binding
protein of unknown cellular function [DNA metabolism,
Other].
Length = 771
Score = 30.2 bits (68), Expect = 3.2
Identities = 24/127 (18%), Positives = 58/127 (45%), Gaps = 4/127 (3%)
Query: 267 ILSEDGALFRQQLKRLAGQKYELKNEEREKQKQTKEMLQIEPADENDISNILQKKKIKEA 326
E +++L+ + EL+ + +K KE +++ E ++ + ++++ K+
Sbjct: 505 FYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKL 564
Query: 327 FKMMKKQKEKAKELSK--PGLVMKTKDGKKINKHKLKRLKENLEQRKKMKDRKKKAKKQT 384
++ K+ +E K L K ++ + K+ K I+K K + E+L + K+ K + +
Sbjct: 565 -ELEKEAQEALKALKKEVESIIRELKEKK-IHKAKEIKSIEDLVKLKETKQKIPQKPTNF 622
Query: 385 IFGTPKD 391
D
Sbjct: 623 QADKIGD 629
>gnl|CDD|184900 PRK14907, rplD, 50S ribosomal protein L4; Provisional.
Length = 295
Score = 29.9 bits (67), Expect = 3.2
Identities = 23/85 (27%), Positives = 32/85 (37%)
Query: 477 KAKKLTAKPIDLKKESDKAETRATLTEKKKIKEAFKMMKKQKEKAKELSKPGLVMKTKDG 536
+ KK AK KE+ K + A T K K+A K+ K + K KT+
Sbjct: 14 EEKKPAAKKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTKSVKTTTKKVTVKFEKTESV 73
Query: 537 KKINKHKLKRLKENLEQRKKMKDRK 561
KK + K KE + K
Sbjct: 74 KKESVAKKTVKKEAVSAEVFEASNK 98
>gnl|CDD|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR). This
family consists of several bovine specific leukaemia
virus receptors which are thought to function as
transmembrane proteins, although their exact function is
unknown.
Length = 561
Score = 30.0 bits (67), Expect = 3.5
Identities = 32/140 (22%), Positives = 58/140 (41%), Gaps = 4/140 (2%)
Query: 428 RQQLKRLAGQKYELKNEEREKQKQTKEMLQIEPADENDISNILRGDILKKAKKLTAKPID 487
R+ +RL K E K E+EK + + + + DI+ DI+ + A P D
Sbjct: 88 RRHRQRLEKDKREKKKREKEK-RGRRRHHSLGTESDEDIAPAQMVDIVTEEMPENALPSD 146
Query: 488 LKKESDKAETRATLTEKKKIKEAFKMMKKQKEKAKELSKPGLVMKTKDGKKINKHKLKRL 547
+ RA + K + + QK + E SK + D + K K
Sbjct: 147 EDDKDPNDPYRALDIDLDKPLADSEKLPVQKHRNAETSKSP---EKGDVPAVEKKSKKPK 203
Query: 548 KENLEQRKKMKDRKKKAKKQ 567
K+ ++++K +D+ KK + +
Sbjct: 204 KKEKKEKEKERDKDKKKEVE 223
>gnl|CDD|184697 PRK14475, PRK14475, F0F1 ATP synthase subunit B; Provisional.
Length = 167
Score = 29.1 bits (65), Expect = 3.5
Identities = 21/91 (23%), Positives = 45/91 (49%), Gaps = 8/91 (8%)
Query: 475 LKKAKKLTAKPIDLKKESDKAETRATLTEKKKIKEAFKMM----KKQKEKAKELSKPGLV 530
LK K A +D +AE L E ++++E + + K ++E+A+ + L
Sbjct: 28 LKVLPKALAGALDAYAAKIQAE----LDEAQRLREEAQALLADVKAEREEAERQAAAMLA 83
Query: 531 MKTKDGKKINKHKLKRLKENLEQRKKMKDRK 561
D +++ ++L+E +++R +M +RK
Sbjct: 84 AAKADARRMEAEAKEKLEEQIKRRAEMAERK 114
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.
Length = 509
Score = 30.0 bits (68), Expect = 3.6
Identities = 17/89 (19%), Positives = 29/89 (32%)
Query: 438 KYELKNEEREKQKQTKEMLQIEPADENDISNILRGDILKKAKKLTAKPIDLKKESDKAET 497
E +++ +Q ++L D + DI KK K AK K + K
Sbjct: 38 IKEALESKKKTPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLK 97
Query: 498 RATLTEKKKIKEAFKMMKKQKEKAKELSK 526
+ KK K+ K++
Sbjct: 98 DELDSSKKAEKKNALDKDDDLNYVKDIDV 126
Score = 29.2 bits (66), Expect = 6.7
Identities = 20/93 (21%), Positives = 33/93 (35%), Gaps = 9/93 (9%)
Query: 476 KKAKKLTAKPIDLKKESDKAETRATLTEKKKIKEAFKMMKKQKEKAKELSKPGLVMKTKD 535
++ K K + K +S T K++IKEA + KK E+ ++ M
Sbjct: 13 EEEAKKKLKKLAAKSKSKGFIT------KEEIKEALESKKKTPEQIDQVLIFLSGMVKDT 66
Query: 536 GKKINKHKLKRLKENLEQRKKMKDRKKKAKKQT 568
K+ + K K AKK+
Sbjct: 67 DDATESDIPKKKTKTA---AKAAAAKAPAKKKL 96
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 30.0 bits (68), Expect = 3.9
Identities = 27/129 (20%), Positives = 72/129 (55%), Gaps = 5/129 (3%)
Query: 440 ELKNEEREKQKQTKEMLQIEPADENDISNILR--GDILKKAKKLTAKPIDLKKESDKAET 497
E+ E + + ++ ++ ++ E I + ++L++ +++++ +L++E +K E
Sbjct: 169 EVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEK 228
Query: 498 RATLTEKKKIKEAFKMMKKQKEKAKELSKPGLVMKTKDGKKINKHKLKRLKENLEQRKKM 557
+ E +++KE + ++K+ E E SK L K ++ ++ + K ++E E+ K++
Sbjct: 229 E--VKELEELKEEIEELEKELES-LEGSKRKLEEKIRELEERIEELKKEIEELEEKVKEL 285
Query: 558 KDRKKKAKK 566
K+ K+KA++
Sbjct: 286 KELKEKAEE 294
>gnl|CDD|218614 pfam05503, Pox_G7, Poxvirus G7-like.
Length = 363
Score = 29.7 bits (67), Expect = 4.0
Identities = 21/93 (22%), Positives = 30/93 (32%), Gaps = 21/93 (22%)
Query: 391 DLPKSQPFIDHVISFSILDNRIWFRNYQILSEDGA-LFRQQLKRLAGQKYELKNEE--RE 447
+LP I V Y L G + +AG LK EE
Sbjct: 209 ELPVKSDAISRV--------------YDFLVRKGVPTSNNYAEYVAG----LKIEELPEA 250
Query: 448 KQKQTKEMLQIEPADENDISNILRGDILKKAKK 480
+ K I PA+ N+ + + +L A K
Sbjct: 251 DSVKKKLAPSIAPANANEGNVMAALRLLDSAAK 283
>gnl|CDD|237560 PRK13922, PRK13922, rod shape-determining protein MreC;
Provisional.
Length = 276
Score = 29.6 bits (67), Expect = 4.0
Identities = 10/54 (18%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 261 WFRNYQILSEDGALFRQQLKRLAGQKYELKNEEREKQKQTKEMLQIEPADENDI 314
+ L E+ +++L L + EL+ E E + +E+L ++ + +
Sbjct: 67 SLASLFDLREENEELKKELLELESRLQELEQLEAENA-RLRELLNLKESLDYQF 119
Score = 29.6 bits (67), Expect = 4.0
Identities = 10/54 (18%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 413 WFRNYQILSEDGALFRQQLKRLAGQKYELKNEEREKQKQTKEMLQIEPADENDI 466
+ L E+ +++L L + EL+ E E + +E+L ++ + +
Sbjct: 67 SLASLFDLREENEELKKELLELESRLQELEQLEAENA-RLRELLNLKESLDYQF 119
>gnl|CDD|234635 PRK00104, scpA, segregation and condensation protein A; Reviewed.
Length = 242
Score = 29.4 bits (67), Expect = 4.3
Identities = 26/108 (24%), Positives = 48/108 (44%), Gaps = 12/108 (11%)
Query: 474 ILKKAKKLTAKPIDLKK--ESDKAETRATLTEKKKIKEAFKMMKKQKEKAKEL-SKPGLV 530
+L K+K L K + ++ E + E L E KK KEA + +K+Q+E+ + SKP
Sbjct: 66 LLIKSKMLLPKVEEFEEEEEDPRQELLEKLIEYKKFKEAAEELKEQEEERAQYFSKPPSD 125
Query: 531 M----KTKDGKKINKHK-----LKRLKENLEQRKKMKDRKKKAKKQTV 569
+ D +++ + +E++K K R K ++
Sbjct: 126 LEEFDAELDEDELDGDVTLLDLFLAFSKLMERKKANKPRHTKIERDEY 173
>gnl|CDD|227382 COG5049, XRN1, 5'-3' exonuclease [DNA replication, recombination,
and repair / Cell division and chromosome partitioning /
Translation].
Length = 953
Score = 29.9 bits (67), Expect = 4.7
Identities = 30/195 (15%), Positives = 69/195 (35%), Gaps = 12/195 (6%)
Query: 324 KEAFKMMKKQKEKAKELSKPGLVMKTKDGKKINKHKLKRLKENLEQRKKMKDRKKKAKKQ 383
+ FK Q+E+ E ++ +K K LK + + ++KK+ K
Sbjct: 374 DDIFKKDHIQEERKNE------SLERFSLRKERKEGLKGMPRVVYEQKKLIGSIKPTLMD 427
Query: 384 TIFGTPKDLPKSQPFIDHVISFSILDNRIWFRNYQILSEDGALFRQQLKRLAGQKYELKN 443
+ + FID + LD + + + D L + + G +
Sbjct: 428 QLQEKKSPDLPDEEFIDTLALPKDLDMKNHELFLKRFANDLGLSISKAIKSKGNYSLEMD 487
Query: 444 EEREKQKQTKEMLQIE-PADENDISNILRGDILKKAKKLTAKPIDLKKESDK-----AET 497
+ + +E + E + + + ++ + T K ++L+ K ++
Sbjct: 488 IASDSPDEDEEEFESEVDSIRKIPDKYVNIIVEEEEENETEKTVNLRFPGWKERYYTSKL 547
Query: 498 RATLTEKKKIKEAFK 512
T ++KI++ K
Sbjct: 548 HFTTDSEEKIRDMAK 562
>gnl|CDD|237855 PRK14900, valS, valyl-tRNA synthetase; Provisional.
Length = 1052
Score = 29.6 bits (66), Expect = 5.9
Identities = 29/159 (18%), Positives = 55/159 (34%), Gaps = 14/159 (8%)
Query: 420 LSEDGALFRQQLKRLAGQKYE------LKNEEREKQKQTKEMLQIEPADENDISNILR-- 471
L E L+G + ++ + +K Q + +PA EN +
Sbjct: 889 LREKRGKLEAHRAMLSGSEANSARRDTMEIQNEQKPTQDGPAAEAQPAQENTVVESAEKA 948
Query: 472 ----GDILKKAKKLTAKPIDLKKESDKAETRATLTEKKKIKEAFKMMKKQKEKAKELSKP 527
+ ++A A I+ E+ + R ++ + + A K +K AK+ +
Sbjct: 949 VAAVSEAAQQAATAVASGIEKVAEAVRKTVRRSVKKAAATRAAMKKKVAKKAPAKKAAAK 1008
Query: 528 GLVMKTKDGKKINKHKL--KRLKENLEQRKKMKDRKKKA 564
K KK K K++ +K K +KA
Sbjct: 1009 KAAAKKAAAKKKVAKKAPAKKVARKPAAKKAAKKPARKA 1047
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc
gene is often associated with scpB (TIGR00281) and scpA
genes, where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 29.6 bits (67), Expect = 6.2
Identities = 45/295 (15%), Positives = 105/295 (35%), Gaps = 45/295 (15%)
Query: 276 RQQLKRLAGQKYELKNEEREKQKQTKEMLQIEPADENDISNILQKK---KIKEAFKMMKK 332
R+ L + E EE E+ ++ + + E + L++K E ++ ++
Sbjct: 223 RELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEE 282
Query: 333 QKEKAKELSKPGLVMKTKDGKKINKHKLKRLKENLEQRKKMKDRKKKAKKQTIFGTPKDL 392
+E KEL + L LEQ+K++ + ++ + L
Sbjct: 283 IEELQKEL-----------------YALANEISRLEQQKQILRERLANLERQLEELEAQL 325
Query: 393 PKSQPFIDHVISFSILDNRIWFRNYQILSEDGALFRQQLKRLAGQKYELKNEEREKQKQT 452
+ L+E+ A ++L+ L + L+ E E + +
Sbjct: 326 EE------------------LESKLDELAEELAELEEKLEELKEELESLEAELEELEAEL 367
Query: 453 KEMLQIEPADENDISNILRGDILKKAKKLTAKPIDLKKESDKAETRATLTEKKKIKEAFK 512
+E+ E + LR + + ++ + L E ++ E R E + +E +
Sbjct: 368 EELESRLEELEEQLET-LRSKVAQLELQIAS----LNNEIERLEARLERLEDR--RERLQ 420
Query: 513 MMKKQKEKAKELSKPGLVMKTKDGKKINKHKLKRLKENLEQRKKMKDRKKKAKKQ 567
++ K E ++ + + + +L+ E LE+ + + + +Q
Sbjct: 421 QEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQ 475
>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis). This nucleolar
family of proteins are involved in 60S ribosomal
biogenesis. They are specifically involved in the
processing beyond the 27S stage of 25S rRNA maturation.
This family contains sequences that bear similarity to
the glioma tumour suppressor candidate region gene 2
protein (p60). This protein has been found to interact
with herpes simplex type 1 regulatory proteins.
Length = 387
Score = 29.3 bits (66), Expect = 6.6
Identities = 31/140 (22%), Positives = 60/140 (42%), Gaps = 6/140 (4%)
Query: 428 RQQLKRLAGQKYELKNEEREKQKQTKEMLQIEPADENDISNILRGDILKKAKKLTAKPID 487
RQ+L+R+ +K E E + + E L E D+ + + D +
Sbjct: 213 RQELERVEEKKLEKMAPEASRLDEMSEGLLEESDDDGEEES---DDESAWEGFESEYEPI 269
Query: 488 LKKESDKAETRATLTEKKKIKEAFKMMKKQKEKAKELSKPGLVMKTKDGKKINKHKLKRL 547
K K +T+A ++ K K ++ ++ KE+ + K + + K+ K K K
Sbjct: 270 NKPVRPKRKTKA---QRNKEKRRKELEREAKEEKQLKKKLAQLARLKEIAKEVAQKEKAR 326
Query: 548 KENLEQRKKMKDRKKKAKKQ 567
EQRK+ ++KK +++
Sbjct: 327 ARKKEQRKERGEKKKLKRRK 346
>gnl|CDD|166660 PLN03019, PLN03019, carbonic anhydrase.
Length = 330
Score = 29.0 bits (64), Expect = 6.7
Identities = 39/142 (27%), Positives = 56/142 (39%), Gaps = 36/142 (25%)
Query: 420 LSEDGALFR--------QQLKRLAGQKYELKNEEREKQKQTKEMLQIEPADENDISNILR 471
LS +GA FR +L+R+ + YE E +K L IE D D++
Sbjct: 51 LSANGACFRCTCFSHFKLELRRMGNESYEDAIEALKK-------LLIEKDDLKDVA---- 99
Query: 472 GDILKKAKKLTAKPIDLKKESDKAETRATLTEKKKIKEAFKMMKKQK---------EKAK 522
K KK+TA+ + SD + ++IKE F KK+K E AK
Sbjct: 100 ---AAKVKKITAE-LQAASSSDSK----SFDPVERIKEGFVTFKKEKYETNPALYGELAK 151
Query: 523 ELSKPGLVMKTKDGKKINKHKL 544
S +V D + H L
Sbjct: 152 GQSPKYMVFACSDSRVCPSHVL 173
>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742).
This is a family of fungal proteins of unknown function.
Length = 182
Score = 28.5 bits (64), Expect = 6.9
Identities = 24/109 (22%), Positives = 50/109 (45%), Gaps = 2/109 (1%)
Query: 276 RQQLKRLAGQKYELKNEEREKQKQTKEMLQIEPADENDISNILQKKKIKEAFKMMKKQKE 335
+++ K LA + ++K E EKQK + + + + D KK K K K+ ++
Sbjct: 61 KKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAED 120
Query: 336 KAKELSKPGLVMKTKDGKKINKHKLKRLKENLEQRKKMKDRKKKAKKQT 384
K ++L+K +T K + L +++ Q + + R+ + K+
Sbjct: 121 KLEDLTKS--YSETLSTLSELKPRKYALHKDIYQSRLDRKRRAEVAKKE 167
>gnl|CDD|214661 smart00435, TOPEUc, DNA Topoisomerase I (eukaryota). DNA
Topoisomerase I (eukaryota), DNA topoisomerase V,
Vaccina virus topoisomerase, Variola virus
topoisomerase, Shope fibroma virus topoisomeras.
Length = 391
Score = 28.9 bits (65), Expect = 7.7
Identities = 25/117 (21%), Positives = 53/117 (45%), Gaps = 18/117 (15%)
Query: 275 FRQQLKRLAGQKYELKNEEREKQKQTKEMLQIEPADENDISNILQKKKIKEAFKMMKKQK 334
+ +++L +K + + ++ K+ + + +D+ L+ K ++ K+ + K
Sbjct: 275 HEKSMEKLQ-EKIKALKYQLKRLKKMILLFE----MISDLKRKLKSKFERDNEKLDAEVK 329
Query: 335 EKAKELSKPGLVMKTKDGKKINKHKLKRLKENLEQ-RKKMKDRKKKAKKQTIFGTPK 390
EK KE K + K K+I RL+E +E+ + D+++ K GT K
Sbjct: 330 EKKKEKKK-----EEKKKKQIE-----RLEERIEKLEVQATDKEE--NKTVALGTSK 374
>gnl|CDD|222879 PHA02563, PHA02563, DNA polymerase; Provisional.
Length = 630
Score = 29.0 bits (65), Expect = 8.0
Identities = 16/77 (20%), Positives = 21/77 (27%), Gaps = 12/77 (15%)
Query: 317 ILQKKKIKEAFKMMKKQKEKAKEL-----SKPGLVMKTKDGKKINKHKLKRLKENLEQRK 371
I +IK K KKQ AK + K L N K+ L +N
Sbjct: 386 IDHFYEIKTNSKGAKKQNMLAKLMLNSLYGKFAL-------NPDNTGKVPYLDDNGRLDL 438
Query: 372 KMKDRKKKAKKQTIFGT 388
+ K
Sbjct: 439 ISNGEENKEPNYIPIAA 455
>gnl|CDD|233224 TIGR00993, 3a0901s04IAP86, chloroplast protein import component
Toc86/159, G and M domains. The long precursor of the
86K protein originally described is proposed to have
three domains. The N-terminal A-domain is acidic,
repetitive, weakly conserved, readily removed by
proteolysis during chloroplast isolation, and not
required for protein translocation. The other domains
are designated G (GTPase) and M (membrane anchor); this
family includes most of the G domain and all of M
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 763
Score = 29.2 bits (65), Expect = 8.5
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 475 LKKAKKLTAKPIDLKKESDKAETRATLTEKKKIKEAFKMMKKQKEKAKEL 524
L KA+ K ++ + R L +KK+ +E K MK K+ KE+
Sbjct: 416 LTKAQMAKLSKEQRKAYLEEYDYRVKLLQKKQWREELKRMKMMKKFGKEI 465
>gnl|CDD|225519 COG2972, COG2972, Predicted signal transduction protein with a
C-terminal ATPase domain [Signal transduction
mechanisms].
Length = 456
Score = 29.0 bits (65), Expect = 8.6
Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 6/62 (9%)
Query: 427 FRQQLKRLAGQKYELKNEEREKQKQTKEML----QIEPADENDISNILRGDILKKAKKLT 482
+ +RL + +N E+++ E+ QI P + +R + +
Sbjct: 232 INEMEERL--EYLIEENYSLEQEQLEAELRALQSQINPHFLYNTLETIRMLAEEDDPEEA 289
Query: 483 AK 484
AK
Sbjct: 290 AK 291
>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682). The
members of this family are all hypothetical eukaryotic
proteins of unknown function. One member is described as
being an adipocyte-specific protein, but no evidence of
this was found.
Length = 322
Score = 28.8 bits (65), Expect = 8.7
Identities = 17/66 (25%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 319 QKKKIKEAFKMMKKQKEKAKELSKPGLVMKTKDGKKINKHKLKRLKENLEQRKKM--KDR 376
+K+ + + +++ KA E + + K+ KK + + K K + E+++K+ K+R
Sbjct: 257 VLRKVDKTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKER 316
Query: 377 KKKAKK 382
KK+A+K
Sbjct: 317 KKQARK 322
Score = 28.8 bits (65), Expect = 9.1
Identities = 17/65 (26%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 504 KKKIKEAFKMMKKQKEKAKELSKPGLVMKTKDGKKINKHKLKRLKENLEQRKKM--KDRK 561
+K+ + + +++ KA E + + K+ KK + + K K + E+++K+ K+RK
Sbjct: 258 LRKVDKTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERK 317
Query: 562 KKAKK 566
K+A+K
Sbjct: 318 KQARK 322
>gnl|CDD|223092 COG0013, AlaS, Alanyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 879
Score = 28.8 bits (65), Expect = 8.9
Identities = 11/60 (18%), Positives = 32/60 (53%), Gaps = 9/60 (15%)
Query: 324 KEAFKMMKKQKEKAKELSKPGLVMKTKDGKKINKHKLKRLKENLEQRKKMKDRKKKAKKQ 383
+ A + +++Q++ KE++ ++K L +++ LE+ K+++ ++ KK+
Sbjct: 704 EAALEYLQEQEDLLKEIAS---LLKV------PPELLPKVERLLEELKELEKELERLKKK 754
Score = 28.8 bits (65), Expect = 8.9
Identities = 11/60 (18%), Positives = 32/60 (53%), Gaps = 9/60 (15%)
Query: 508 KEAFKMMKKQKEKAKELSKPGLVMKTKDGKKINKHKLKRLKENLEQRKKMKDRKKKAKKQ 567
+ A + +++Q++ KE++ ++K L +++ LE+ K+++ ++ KK+
Sbjct: 704 EAALEYLQEQEDLLKEIAS---LLKV------PPELLPKVERLLEELKELEKELERLKKK 754
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 28.6 bits (64), Expect = 9.1
Identities = 28/143 (19%), Positives = 44/143 (30%), Gaps = 11/143 (7%)
Query: 428 RQQLKRLAGQKYELKNEEREKQKQTKEMLQIEPAD---ENDISNILRGDILKKAK-KLTA 483
R + Q E + KQKQ +E A + + KKA +
Sbjct: 110 RLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKK 169
Query: 484 KPIDLKKESDKAETRATLTEKKKIKEAFKMMKKQKEKAKELSKPGLVMKTKDGKKINKHK 543
K + AE + + K A + KK + +AK+ + + KK +
Sbjct: 170 KAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAA-------AEAKKKAAAE 222
Query: 544 LKRLKENLEQRKKMKDRKKKAKK 566
K K K A K
Sbjct: 223 AKAAAAKAAAEAKAAAEKAAAAK 245
>gnl|CDD|185747 cd09234, V_HD-PTP_like, Protein-interacting V-domain of mammalian
His-Domain type N23 protein tyrosine phosphatase and
related domains. This family contains the V-shaped (V)
domain of mammalian His-Domain type N23 protein tyrosine
phosphatase (HD-PTP, also known as PTPN23) and related
domains. It belongs to the V_Alix_like superfamily which
includes the V domains of Bro1 and Rim20 (also known as
PalA) from Saccharomyces cerevisiae, mammalian Alix
(apoptosis-linked gene-2 interacting protein X/ also
known as apoptosis-linked gene-2 interacting protein 1,
AIP1), and related domains. HD_PTP interacts with the
ESCRT (Endosomal Sorting Complexes Required for
Transport) system, and participates in cell migration
and endosomal trafficking. The related Alix V-domain
(belonging to a different family in this superfamily)
contains a binding site, partially conserved in the
superfamily, for the retroviral late assembly (L) domain
YPXnL motif. The Alix V-domain is also a dimerization
domain. In addition to the V-domain, HD_PTP also has an
N-terminal Bro1-like domain, a proline-rich region
(PRR), a catalytically inactive tyrosine phosphatase
domain, and a region containing a PEST motif. Bro1-like
domains bind components of the ESCRT-III complex,
specifically to CHMP4 in the case of HD-PTP. The
Bro1-like domain of HD-PTP can also bind human
immunodeficiency virus type 1 (HIV-1) nucleocapsid.
HD-PTP is encoded by the PTPN23 gene, a tumor suppressor
gene candidate frequently absent in human kidney,
breast, lung, and cervical tumors. This family also
contains Drosophila Myopic, which promotes epidermal
growth factor receptor (EGFR) signaling, and
Caenorhabditis elegans (enhancer of glp-1) EGO-2 which
promotes Notch signaling.
Length = 337
Score = 28.8 bits (65), Expect = 9.2
Identities = 31/154 (20%), Positives = 64/154 (41%), Gaps = 12/154 (7%)
Query: 421 SEDGALFRQQLKRLAGQKYELKNEEREKQKQTKEMLQIEP--ADENDISNILRGDILKKA 478
SE+ A +L R + E K+EE ++ LQ++P + D L D++++
Sbjct: 12 SEEKA----KLLREVVSEIEDKDEELDQFL---SSLQLDPLNVMDMDGQFELPQDLVERC 64
Query: 479 KKLTAKPIDLKK--ESDKAETRATLTEKKKIKEAFKMMKKQKEKAKEL-SKPGLVMKTKD 535
L+ +P +K E+ + + + E ++++++ + KE G +
Sbjct: 65 AALSVRPDTIKNLVEAMGELSDVYQDVEAMLNEIESLLEEEELQEKEFQEAVGKRGSSIA 124
Query: 536 GKKINKHKLKRLKENLEQRKKMKDRKKKAKKQTV 569
K +LK+ KE E+ + KA +
Sbjct: 125 HVTELKRELKKYKEAHEKASQSNTELHKAMNLHI 158
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.132 0.370
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 28,762,787
Number of extensions: 2884701
Number of successful extensions: 7240
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6263
Number of HSP's successfully gapped: 687
Length of query: 569
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 467
Effective length of database: 6,413,494
Effective search space: 2995101698
Effective search space used: 2995101698
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (27.8 bits)