RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3244
(569 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 85.7 bits (211), Expect = 2e-17
Identities = 101/577 (17%), Positives = 192/577 (33%), Gaps = 121/577 (20%)
Query: 4 LLLFKKS---DKFF---HRDPHSEITE--KAEPKIELPPPSRNSDEPIAKKRKWINKQRV 55
LL K+ KF R + + K E + PS + I ++ + N +V
Sbjct: 70 TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ----PSMMTRMYIEQRDRLYNDNQV 125
Query: 56 LIFASRGISFTDR-HLMKNLQNMLPHSRPGTK-----MER--KDTLT--VVNERRWINKQ 105
FA +S R L+ L RP + K + V + K
Sbjct: 126 --FAKYNVS---RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180
Query: 106 RVLIF-ASRGISFTDRHLMKNLQNMLPHSRPGTKMERKDTLTVVNEICEMKNCNKCILFE 164
IF + + +++ LQ +L P + + I ++ + +L
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 165 GRLRRDLYM----WFANVHEGPSLKC--LV----ESVFT-MGELKLTGNSLKGSRPLLSF 213
L + A +L C L+ + V + T SL L+
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300
Query: 214 DEKFSQEPHYRLMQELLTQIFGT-PKDLP----KSQPFIDHVISFSILDNRIWFRNYQIL 268
DE ++ LL + P+DLP + P +I+ SI D + N++ +
Sbjct: 301 DE----------VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV 350
Query: 269 SEDGALFRQQLKRLAGQKYELKNEEREKQKQTKEMLQIEPADENDI-SNILQ----KKKI 323
+ D +L + + L E + ++ + L + P + I + +L
Sbjct: 351 NCD------KLTTI--IESSLNVLEPAEYRKMFDRLSVFPPSAH-IPTILLSLIWFDVIK 401
Query: 324 KEAFKMMKKQKEKAKELSKPGLVMKTKDGKKINKHKLKRLKENLEQRKKMKDRKKKAKKQ 383
+ ++ +L K LV K I+ ++ K+K + A +
Sbjct: 402 SDVMVVV-------NKLHKYSLVEKQPKESTISIP-------SIYLELKVKLENEYALHR 447
Query: 384 TI---FGTPKDLPKSQPFIDHVISFSILDNRI-WFRNYQI----LSEDGALFRQ------ 429
+I + PK + LD + + E LFR
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPY------LDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR 501
Query: 430 --QLK-RLAGQKYE----LKNEEREKQKQTKEMLQIEPADENDISNILRGDILKKAKK-- 480
+ K R + + N ++ + + +P E ++ IL D L K ++
Sbjct: 502 FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL--DFLPKIEENL 559
Query: 481 LTAKPIDLKKESDKAETRATLTEKKKI-KEAFKMMKK 516
+ +K DL + A + E + I +EA K +++
Sbjct: 560 ICSKYTDLLR-------IALMAEDEAIFEEAHKQVQR 589
Score = 50.6 bits (120), Expect = 1e-06
Identities = 74/460 (16%), Positives = 143/460 (31%), Gaps = 111/460 (24%)
Query: 192 FTMGELKLTGNSLKGSRPLLSFDEKFSQEPHYRLMQELLTQIFGTPKDLPKSQPFIDHVI 251
F GE + + L F++ F + +Q++ I + ++ IDH+I
Sbjct: 9 FETGEHQYQYKDI-----LSVFEDAFVDNFDCKDVQDMPKSIL-SKEE-------IDHII 55
Query: 252 SFSILDNRIWFRNYQILSEDGALFRQQLKRLAGQKYE-----LKNEEREKQKQTKEMLQI 306
+ + +LS+ + ++ ++ + Y+ +K E+R+ T+ ++
Sbjct: 56 MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ 115
Query: 307 EPADENDISNILQKKKIKEAFKMMKKQKEKAKELSK-PGLV---M----KT-------KD 351
ND + + K + + K ++ EL ++ + KT
Sbjct: 116 RDRLYND-NQVFAKYNVSRL-QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173
Query: 352 GK-------KI------NKHKLKRLKENLEQRKKMKDRKKKAKKQTIFGTP--------- 389
K KI N + + + E L++ D ++
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 390 -KDLPKSQPFIDHVISFSILDN----RIW--F----------RNYQILSEDGALFRQQLK 432
+ L KS+P + +L N + W F R Q+ A +
Sbjct: 234 LRRLLKSKP---YENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI- 289
Query: 433 RLAGQKYELKNEEREK----------QKQTKEMLQIEPADENDISNILRGDILK------ 476
L L +E + Q +E+L P + I+ +R +
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH 349
Query: 477 -KAKKLTAKPIDLKKES-DKAETR------ATLTEKKKIKEA------FKMMKKQKEK-A 521
KLT I+ + AE R + I F ++K
Sbjct: 350 VNCDKLT-TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV 408
Query: 522 KELSKPGLVMKTKDGKKINKHKLK-RLKENLEQRKKMKDR 560
+L K LV K I+ + LK LE +
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS 448
Score = 36.4 bits (83), Expect = 0.031
Identities = 26/148 (17%), Positives = 61/148 (41%), Gaps = 35/148 (23%)
Query: 439 YELKNEEREKQKQTKEMLQI-EPA-----DENDISNILRGDILKKAKKLTAKPID--LKK 490
+ + E E Q Q K++L + E A D D+ ++ + IL K + ID +
Sbjct: 5 HHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKS-ILSKEE------IDHIIMS 57
Query: 491 ESDKAETR----ATLTEKKKIKEAF--KMMKKQ----KEK-AKELSKPGLVMKT------ 533
+ + T L++++++ + F ++++ E +P ++ +
Sbjct: 58 KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117
Query: 534 ---KDGKKINKHKLKRLKENLEQRKKMK 558
D + K+ + RL+ L+ R+ +
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALL 145
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.2 bits (109), Expect = 3e-05
Identities = 49/304 (16%), Positives = 90/304 (29%), Gaps = 108/304 (35%)
Query: 119 DRHLMKNLQNMLPHSRPGTKMERKDTLTVVNEICEMKN-CNKCILF---EGRLRRDLY-- 172
D H G + L +V N N I F +G+ R+ Y
Sbjct: 1650 DNHFKDTY---------GFSI-----LDIVIN-----NPVNLTIHFGGEKGKRIRENYSA 1690
Query: 173 MWFANVHEGPSLKCLVESVFTMGELKLTGNSLKGSRPLLSFDEKFSQEP--------HYR 224
M F + +G K E +F T + + + LLS + F+Q P +
Sbjct: 1691 MIFETIVDG---KLKTEKIFKEINEHSTSYTFRSEKGLLSATQ-FTQ-PALTLMEKAAFE 1745
Query: 225 LMQELLTQIFGTPKDLPKSQPFIDH-------------VISFSILDNRIWFRNYQILSED 271
++ P D F H V+S E
Sbjct: 1746 DLKSK----GLIPAD----ATFAGHSLGEYAALASLADVMSI----------------ES 1781
Query: 272 GA--LFRQQLKRLAGQKYELKNEEREKQKQTKEMLQIEPA------DENDISNILQK--- 320
+F R G ++ E + M+ I P + + ++++
Sbjct: 1782 LVEVVF----YR--GMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGK 1835
Query: 321 --KKIKEA--FKMMKKQ-----KEKAKELSKPGLVMKTKDGKKINKHKLKRLKE--NLEQ 369
+ E + + +Q +A L V+ +KI + L++ +LE+
Sbjct: 1836 RTGWLVEIVNYNVENQQYVAAGDLRA--LDTVTNVLNFIKLQKI---DIIELQKSLSLEE 1890
Query: 370 RKKM 373
+
Sbjct: 1891 VEGH 1894
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 44.1 bits (104), Expect = 1e-04
Identities = 51/310 (16%), Positives = 115/310 (37%), Gaps = 30/310 (9%)
Query: 263 RNYQILSEDGALFRQQLKRLAGQKYELKNEEREKQKQTKEMLQIEPADENDISNILQKKK 322
Q E +LK L + +L E+ Q++ + ++ A+ ++ L KK
Sbjct: 864 EELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELY-AEAEEMRVRLAAKK 922
Query: 323 I---KEAFKMMKKQKEKAKELSKPGLVMKTKDGKKINKHKLKRLKENLEQRKKMKDRKKK 379
+ +M + +E+ + + L + K ++ ++L+E R+K++ K
Sbjct: 923 QELEEILHEMEARIEEEEERSQQ--LQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVT 980
Query: 380 AKKQTIFGTPKDLPKSQPFIDHVISFSILDNRIWFRNYQILSEDGALFRQQLKRLAG--Q 437
A + I D I L+++ L +++ L
Sbjct: 981 ADGK-------------------IKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLA 1021
Query: 438 KYELKNEEREKQKQTKEMLQIEPADENDISNILRGDILKKAKKLTAKPIDLKKESDKAET 497
+ E K + K K E + E R ++ K +KL + DL ++ + +
Sbjct: 1022 EEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQA 1081
Query: 498 RATLTEKKKIKEAFKMMKKQKEKAKELSKPGLVMKTKDGKKINKHKLKRLKENLEQRKKM 557
+ + + K+ ++ E S+ +K + + + L+E+LE K
Sbjct: 1082 QIAELKAQLAKKEEELQAALARLEDETSQKNNALKK---IRELESHISDLQEDLESEKAA 1138
Query: 558 KDRKKKAKKQ 567
+++ +K K+
Sbjct: 1139 RNKAEKQKRD 1148
Score = 42.9 bits (101), Expect = 3e-04
Identities = 49/298 (16%), Positives = 108/298 (36%), Gaps = 39/298 (13%)
Query: 276 RQQLKRLAGQKYELKNEEREKQKQTKEM------LQIEPADENDISNILQKKKIKEAFKM 329
+ RLA +K EL+ E + + +E LQ E L+++ +E
Sbjct: 912 EEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAAR 971
Query: 330 MKKQKEKAKELSKPGLVMKTKDGKKINKHKLKRLKENLEQRKKMKDRKKKAKKQTIFGTP 389
K Q EK K + + +KL + ++ LE+R +++
Sbjct: 972 QKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKA---- 1027
Query: 390 KDLPKSQPFIDHVISFSILDNRIWFRNYQILSEDGALFRQQLKRLAGQKYELKNEEREKQ 449
K+L K + + +LK+ + EL+ +R+ +
Sbjct: 1028 KNLTKLK---------------------NKHESMISELEVRLKKEEKSRQELEKIKRKLE 1066
Query: 450 KQTKEMLQIEPADENDISNILRGDILKKAKKLTAKPIDLKKESDKAETRATLTEKKKIKE 509
++ + L + A+ L+ + KK ++L A + E + ++ L + ++++
Sbjct: 1067 GESSD-LHEQIAELQAQIAELKAQLAKKEEELQA--ALARLEDETSQKNNALKKIRELES 1123
Query: 510 AFKMMKKQKEKAKELSKPGLVMKTKDGKKINKHKLKRLKENLEQRKKMKDRKKKAKKQ 567
+++ E K K + K+ +L+ LK LE +++ +
Sbjct: 1124 HISDLQEDLESEKAARN-----KAEKQKRDLSEELEALKTELEDTLDTTATQQELRGS 1176
Score = 39.8 bits (93), Expect = 0.003
Identities = 28/147 (19%), Positives = 59/147 (40%), Gaps = 23/147 (15%)
Query: 428 RQQLKRLAGQKYELKNEEREKQKQTKEMLQIEPADENDISNILRGDILKKAKKLTAKPID 487
+ RLA +K EL+ E + + +E + + + KK+ + +D
Sbjct: 912 EEMRVRLAAKKQELEEILHEMEARIEEEEER------------SQQLQAEKKKMQQQMLD 959
Query: 488 LKKESDKAE-TRATLTEKK-----KIKEAFKMMKKQKEKAKELSKPGLVMKTKDGKKINK 541
L+++ ++ E R L +K KIK+ + +++ +L+K + K ++
Sbjct: 960 LEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTK-----ERKLLEERVS 1014
Query: 542 HKLKRLKENLEQRKKMKDRKKKAKKQT 568
L E E+ K + K K +
Sbjct: 1015 DLTTNLAEEEEKAKNLTKLKNKHESMI 1041
Score = 34.8 bits (80), Expect = 0.087
Identities = 47/295 (15%), Positives = 105/295 (35%), Gaps = 39/295 (13%)
Query: 275 FRQQLKRLAGQKYELKNEEREKQKQTKEMLQIEPADENDISNILQKKKIKEAFKMMKKQK 334
R + L K T++ +++ DE K++ ++A +K+ +
Sbjct: 828 VRSFMNVXHWPWMXLFFXIXPLLKVTRQEEEMQAKDEELQR---TKERQQKAEAELKELE 884
Query: 335 EKAKELSKPGLVMKTKDGKKINKHKLKRLKENLEQRKKMKDRKKKAKKQTIFGTPKDLPK 394
+K +L + K + + KL+ E + ++M+ R K++
Sbjct: 885 QKHTQLCEE---------KNLLQEKLQAETELYAEAEEMRVRLAAKKQE----------- 924
Query: 395 SQPFIDHVISFSILDNRIWFRNYQILSEDGALFRQQLKRLAGQKYELKNEEREKQKQTKE 454
++ RI + E + + K++ Q +L+ E+ E+++ ++
Sbjct: 925 ------LEEILHEMEARI-----EEEEERSQQLQAEKKKMQQQMLDLE-EQLEEEEAARQ 972
Query: 455 MLQIEPADENDISNILRGDILKKAKKLTAKPIDLKKESDKAETRATLTEKKKIKEAFKMM 514
LQ+E + + DIL + L KE E R + +E K
Sbjct: 973 KLQLEKVTADGKIKKMEDDILIMEDQNN----KLTKERKLLEERVSDLTTNLAEEEEKAK 1028
Query: 515 KKQKEKAKELSKPGLVMKTKDGKKINKHKLKRLKENLEQRKKMKDRKKKAKKQTV 569
K K K S + ++ ++ +L+++K LE + + +
Sbjct: 1029 NLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQI 1083
Score = 32.5 bits (74), Expect = 0.52
Identities = 24/121 (19%), Positives = 48/121 (39%), Gaps = 4/121 (3%)
Query: 263 RNYQILSEDGALFRQQLKRLAGQKYELKNEEREKQKQTKEMLQIEPADENDISNILQKKK 322
+ + L + + +Q+ L Q ELK + +K+++ + L DE N KK
Sbjct: 1060 KIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALA-RLEDETSQKNNALKK- 1117
Query: 323 IKEAFKMMKKQKEKAKELSKPGLVMKTKDGKKINKHKLKRLKENLEQRKKMKDRKKKAKK 382
I+E + +E + K + K+ +L+ LK LE +++ +
Sbjct: 1118 IRELESHISDLQEDLESEKA--ARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRG 1175
Query: 383 Q 383
Sbjct: 1176 S 1176
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 36.6 bits (85), Expect = 0.024
Identities = 15/207 (7%), Positives = 59/207 (28%), Gaps = 31/207 (14%)
Query: 322 KIKEAFKMMKKQKEKAKELSKPGLVMKTKDGKKINKHKLKRLKENLEQRKKMKDRKKKAK 381
+++ + ++ + K T + L++ ++ + +++ +++K
Sbjct: 817 ELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKI 876
Query: 382 KQTIFGTPKDLPKSQPFIDHVISFSILDNRIWFRNYQILSEDGAL--FRQQLKRLAGQKY 439
+ + + R + L
Sbjct: 877 AVLL-------------------------QKYNRILKKLENWATTKSVYLGSNETGDSIT 911
Query: 440 ELKNEEREKQKQTKEMLQIEPADENDISNILRGDILKKAKKLTAKPIDLKKESDKAETRA 499
++ + + + E +E +D+ +IL + + +L + D +
Sbjct: 912 AVQAKLKNLEAFDGECQSLEGQSNSDLLSILA----QLTELNYNGVPELTERKDTFFAQQ 967
Query: 500 TLTEKKKIKEAFKMMKKQKEKAKELSK 526
K + + + E+ +++
Sbjct: 968 WTGVKSSAETYKNTLLAELERLQKIED 994
Score = 30.4 bits (69), Expect = 1.7
Identities = 10/95 (10%), Positives = 31/95 (32%), Gaps = 14/95 (14%)
Query: 262 FRNYQILSEDGALFRQQLKRLAGQKYELKNEEREKQKQTKEML-QIEPADENDISNILQK 320
+ + + +LK L E ++ E + +L Q+ + N + + ++
Sbjct: 900 YLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTER 959
Query: 321 K-------------KIKEAFKMMKKQKEKAKELSK 342
K + + + E+ +++
Sbjct: 960 KDTFFAQQWTGVKSSAETYKNTLLAELERLQKIED 994
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.8 bits (76), Expect = 0.057
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Query: 503 EKKKIKEAFKMMKKQKEKAKELSKPGLVMK 532
EK+ +K K+ K A + S P L +K
Sbjct: 18 EKQALK---KLQASLKLYADD-SAPALAIK 43
Score = 31.8 bits (71), Expect = 0.27
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Query: 319 QKKKIKEAFKMMKKQKEKAKELSKPGLVMK 348
+K+ +K K+ K A + S P L +K
Sbjct: 18 EKQALK---KLQASLKLYADD-SAPALAIK 43
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 35.0 bits (81), Expect = 0.079
Identities = 23/295 (7%), Positives = 72/295 (24%), Gaps = 64/295 (21%)
Query: 259 RIWFRNYQILSEDGALFRQQLKRLAGQKYELKNEEREKQKQTKEMLQIEPADENDISNIL 318
W + Q E + + ++ EK + +E+ ++E + + +
Sbjct: 779 VQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEKPPKGQEVSELEAIYNSLQTKLR 838
Query: 319 QKKKIKEAFKMMKKQKEKAKELSKPGLVMKTKDGKKINKHKLKRLKENLEQRKKMKDRKK 378
K+ E S + ++ + L+ + ++ + +
Sbjct: 839 LIKREPFVAPAGLTPNEIDSTWSAL------EKAEQEHAEALRIELKRQKKIAVLLQKYN 892
Query: 379 KAKKQTIFGTPKDLPKSQPFIDHVISFSILDNRIWFRNYQILSEDGALFRQQLKRLAGQK 438
+ K+ N+
Sbjct: 893 RILKK------------------------------LENWATTKSV----YLGSNETGDSI 918
Query: 439 YELKNEEREKQKQTKEMLQIEPADENDISNILRGDILKKAKKLTAKPIDLKKESDKAETR 498
++ + + + E +E +D+ +IL + + +L + D +
Sbjct: 919 TAVQAKLKNLEAFDGECQSLEGQSNSDLLSILA----QLTELNYNGVPELTERKDTFFAQ 974
Query: 499 ATLTEKKKIKEAFKMMKKQKEKAKELSKPGLVMKTKDGKKINKHKLKRLKENLEQ 553
K + + + E+ +++ L +
Sbjct: 975 QWTGVKSSAETYKNTLLAELERLQKIED--------------------LHHHHHH 1009
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 34.2 bits (77), Expect = 0.12
Identities = 27/232 (11%), Positives = 82/232 (35%), Gaps = 4/232 (1%)
Query: 266 QILSEDGALFRQQLKRLAGQKYELKNEEREKQKQTKEMLQIEPADENDISNILQKKKIKE 325
E +F + + ++ + + ++K+ Q + A + S +LQ
Sbjct: 359 DSEREAIEVFIRSSFKDVDHLFQKELAAQLEKKRDDFCKQNQEASSDRCSGLLQVIFSPL 418
Query: 326 AFKMMKKQKEKAKELSKPGLVMKTKDGKKINKHKLKRLKENLEQRKKMKDRKKKAKKQTI 385
++ K L ++ K ++ R E+ + + K++ I
Sbjct: 419 EEEVKAGIYSKPGGYR---LFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAI 475
Query: 386 FGTPKDLPKSQPFIDHVISFSILDNRIWFRNYQILSEDGALFRQQLKRLAGQKYELKNE- 444
T + L + + I+ + +++ ++ + Q+ + +L +
Sbjct: 476 LQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKM 535
Query: 445 EREKQKQTKEMLQIEPADENDISNILRGDILKKAKKLTAKPIDLKKESDKAE 496
E ++ + KE + + +L+ K+++ + + DL+ + + +
Sbjct: 536 ENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKMRRRK 587
Score = 29.9 bits (66), Expect = 2.6
Identities = 28/143 (19%), Positives = 64/143 (44%), Gaps = 7/143 (4%)
Query: 426 LFRQQLKRLAGQKYELKNEEREKQKQTKEMLQIEPADENDISNILRGDILKKAKKLTAKP 485
LF Q+L+ L + YE + + ++ + L+ + + + I L+ D K+ +
Sbjct: 435 LFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAI---LQTDQTLTEKEKEIEV 491
Query: 486 IDLKKESDKAETRATLTEKKKIKEAFKMMKKQKEKAKELSKPGLVMKTKDGKKINKHKLK 545
+K ES +A + + ++ +MM++++ +E K D ++ K + +
Sbjct: 492 ERVKAESAQASAK---MLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQER 548
Query: 546 RLKENL-EQRKKMKDRKKKAKKQ 567
L L EQ + +K+ +K +
Sbjct: 549 TLALKLQEQEQLLKEGFQKESRI 571
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD;
2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5
d.87.1.1
Length = 499
Score = 33.3 bits (77), Expect = 0.21
Identities = 7/55 (12%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 302 EML-QIEPADENDISNILQKKKIKEAFKMMKKQKEKAKELSKPGLVMKTKDGKKI 355
+ P ++ D + +L++ + ++ K + + + G+++ DG+ +
Sbjct: 212 ASQDHVLPYEDADAALVLEESFAERGVRLFKNARAASVTRTGAGVLVTMTDGRTV 266
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets,
alpha helices, AMY amyloidosis, blood coagulation,
disease mutation, glycoprot phosphoprotein; HET: NAG NDG
BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Length = 411
Score = 32.6 bits (74), Expect = 0.37
Identities = 23/117 (19%), Positives = 47/117 (40%)
Query: 275 FRQQLKRLAGQKYELKNEEREKQKQTKEMLQIEPADENDISNILQKKKIKEAFKMMKKQK 334
+ L+ L ++++N+ E ++ K + DE+ N++ +K + + K
Sbjct: 36 VDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMK 95
Query: 335 EKAKELSKPGLVMKTKDGKKINKHKLKRLKENLEQRKKMKDRKKKAKKQTIFGTPKD 391
+A L+ + ++ N K+ LKE + Q + K Q T KD
Sbjct: 96 YEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQEPCKDTVQIHDITGKD 152
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 32.3 bits (73), Expect = 0.44
Identities = 16/112 (14%), Positives = 40/112 (35%), Gaps = 13/112 (11%)
Query: 273 ALFRQQLKRLAGQKYELKNEEREKQKQTKEMLQIEPADENDISNILQKKKIKEAFKMMKK 332
L+R+ G+ L NE + +++L++ P ++ + + K K+
Sbjct: 353 GLYRR------GEAQLLMNEFESAKGDFEKVLEVNPQNK-AARLQISMCQKK-----AKE 400
Query: 333 QKEKAKELSKPGLVMKTKDGKKINKHKLKRLKENLEQRKKMKDRKKKAKKQT 384
E+ + + + K + + K+ E K +A ++
Sbjct: 401 HNERDRRIYA-NMFKKFAEQDAKEEANKAMGKKTSEGVTNEKGTDSQAMEEE 451
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 31.3 bits (70), Expect = 0.50
Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 278 QLKRLAGQKYELKNEEREKQKQTKEMLQIEPADENDISNILQK--KKIKEAFKMMKKQKE 335
Q RL + E + RE+Q+ K + +++ A + +K K ++E + +Q E
Sbjct: 76 QADRLTQEP-ESIRKWREEQR--KRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVE 132
Query: 336 KAKELSK 342
K K ++
Sbjct: 133 KNKINNR 139
Score = 31.3 bits (70), Expect = 0.54
Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 476 KKAKKLTAKPIDLKKESDKAETRATLTEKKKIKEAFKMMKKQKEKAKELSK 526
++ K+L D + + E R KK ++E + +Q EK K ++
Sbjct: 93 EQRKRLQEL--DAASKVMEQEWREK--AKKDLEEWNQRQSEQVEKNKINNR 139
Score = 28.2 bits (62), Expect = 6.4
Identities = 16/96 (16%), Positives = 33/96 (34%), Gaps = 29/96 (30%)
Query: 290 KNEEREKQKQTKEMLQIEPADENDISNILQKKKIKEAFKMMKKQKEKAKELSKPGLVMKT 349
+E E ++ +E Q+K+++E K +++ +E +K
Sbjct: 80 LTQEPESIRKWREE---------------QRKRLQELDAASKVMEQEWREKAK------- 117
Query: 350 KDGKKINKHKLKRLKENLEQRKKMKDRKKKAKKQTI 385
K + + EQ +K K + A K
Sbjct: 118 -------KDLEEWNQRQSEQVEKNKINNRIADKAFY 146
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 31.6 bits (72), Expect = 0.88
Identities = 35/243 (14%), Positives = 79/243 (32%), Gaps = 69/243 (28%)
Query: 277 QQLKRLAGQKYELKNEEREKQKQTKEMLQIEPADENDISNILQKKKIKEAFKMMKKQKEK 336
++LK A K + + ++ ++KI E K K EK
Sbjct: 907 KKLKIEARSVERYKKLHIGLENKIMQL----------------QRKIDEQNKEYKSLLEK 950
Query: 337 AKELSKPGLVMKTKDGKKINKHKLKRLKENLEQRKKMKDRKKKAKKQTIFGTPKDLPKSQ 396
L + + ++L+ ++E+ + ++ K A +
Sbjct: 951 MNNL------------EITYSTETEKLRSDVERLRMSEEEAKNATNRV------------ 986
Query: 397 PFIDHVISFSILDNRIWFRNYQILSEDGALFRQQLKRLAGQKYELKNEEREKQKQTKEML 456
L E+ A R++L + +K ++ E +K K E L
Sbjct: 987 ---------------------LSLQEEIAKLRKELHQTQTEKKTIE-EWADKYKHETEQL 1024
Query: 457 QIEPADENDISNILRGDILKKAKKLTAKPIDLKKESDKAETRATLTEKKKIKEAFKMMKK 516
E ++N + + ++L + D KE + + + E K+++ +
Sbjct: 1025 VSELKEQNT-------LLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERL 1077
Query: 517 QKE 519
+ +
Sbjct: 1078 RYQ 1080
Score = 30.5 bits (69), Expect = 1.8
Identities = 26/191 (13%), Positives = 69/191 (36%), Gaps = 18/191 (9%)
Query: 262 FRNYQILSEDGALFRQQLKRLAGQKYELKNEEREKQKQTKEMLQIEPADENDISNILQKK 321
+ +I + +++ L + +L+ + E+ K+ K +L+ E S + +
Sbjct: 906 LKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYST--ETE 963
Query: 322 KIKEAFKMMKKQKEKAKELSKPGLVMKTKDGKKINKHKLKRLKENLEQRKKMKDRKKKAK 381
K++ + ++ +E+AK + + KL++ + KK +
Sbjct: 964 KLRSDVERLRMSEEEAKNAT------NRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKY 1017
Query: 382 KQTIFGTPKDLPKSQPFIDHVISFSILDNRIWFRNYQILSEDGALFRQQLKRLAGQKYEL 441
K +L + ++L N +I + + K+L + +L
Sbjct: 1018 KHETEQLVSELKEQN---------TLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQL 1068
Query: 442 KNE-EREKQKQ 451
+ + E+ +
Sbjct: 1069 ELDLNDERLRY 1079
Score = 30.1 bits (68), Expect = 2.6
Identities = 25/163 (15%), Positives = 60/163 (36%), Gaps = 24/163 (14%)
Query: 424 GALFRQQLKRLAGQKYELKNEEREKQKQTKEMLQIEPADENDISNILRGDILKKAKKLTA 483
+ R++ + + L+ R + K + + I +RG + + T
Sbjct: 828 MYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTL 887
Query: 484 KPIDL----------KKESDKAETRATLTEK---------KKIKEAFKMMKKQKEKAKEL 524
K I K+E K + A E+ KI + + + +Q ++ K L
Sbjct: 888 KAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSL 947
Query: 525 SKPGLVMKTKDGKKINKHKLKRLKENLEQRKKMKDRKKKAKKQ 567
+ K + + + ++L+ ++E+ + ++ K A +
Sbjct: 948 LE-----KMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNR 985
>3lzd_A DPH2; diphthamide biosynthesis, radical SAM enzyme, gene triplicat
iron-sulfur cluster, biosynthetic protein; 2.10A
{Pyrococcus horikoshii} PDB: 3lzc_A
Length = 378
Score = 31.0 bits (69), Expect = 1.0
Identities = 10/61 (16%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 312 NDISNILQKKKIKEAFKMMKKQKEKAKELSKPGLVMKTKDGKKINKHKLKRLKENLEQRK 371
+ + + + Q KA + K G+++ K G+ + KR+ + L++
Sbjct: 236 DPYTKAFSWIDPERFIRKRWAQIAKAMDAKKFGVIVSIKKGQL-RLAEAKRIVKLLKKHG 294
Query: 372 K 372
+
Sbjct: 295 R 295
Score = 29.4 bits (65), Expect = 3.3
Identities = 10/49 (20%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 508 KEAFKMMKKQKEKAKELSKPGLVMKTKDGKKINKHKLKRLKENLEQRKK 556
+ + Q KA + K G+++ K G+ + KR+ + L++ +
Sbjct: 248 ERFIRKRWAQIAKAMDAKKFGVIVSIKKGQL-RLAEAKRIVKLLKKHGR 295
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 30.2 bits (68), Expect = 1.8
Identities = 16/112 (14%), Positives = 43/112 (38%), Gaps = 13/112 (11%)
Query: 273 ALFRQQLKRLAGQKYELKNEEREKQKQTKEMLQIEPADENDISNILQKKKIKEAFKMMKK 332
L R+ G+ + N+ + +++LQ+ P +N K ++ + +++
Sbjct: 232 GLSRR------GEAHLAVNDFELARADFQKVLQLYP------NNKAAKTQLAVCQQRIRR 279
Query: 333 QKEKAKELSKPGLVMKTKDGKKINKHKLKRLKENLEQRKKMKDRKKKAKKQT 384
Q + K+L + + + + K + + K + + A Q+
Sbjct: 280 QLAREKKLYA-NMFERLAEEENKAKAEASSGDHPTDTEMKEEQKSNTAGSQS 330
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A
{Homo sapiens}
Length = 522
Score = 30.5 bits (69), Expect = 1.9
Identities = 22/129 (17%), Positives = 43/129 (33%), Gaps = 21/129 (16%)
Query: 261 WFRNYQILSEDGALFRQQLKR------LAGQKYELKNEEREKQKQTKEMLQIEPADENDI 314
FR D AL R+ ++ L Q + +E R + + + L +N
Sbjct: 7 LFRVD--KGGDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRA-DNLN---KLKNLC 60
Query: 315 SNILQKKKIKEAFKMMKKQKEKAKELSKPGLVMKTKDGKKINKHKLKRLKENLEQRKKMK 374
S K I E K+KE + + + D + ++ + + R +
Sbjct: 61 S-----KTIGEK----MKKKEPVGDDESVPENVLSFDDLTADALANLKVSQIKKVRLLID 111
Query: 375 DRKKKAKKQ 383
+ K +
Sbjct: 112 EAILKCDAE 120
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase;
1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Length = 370
Score = 29.7 bits (67), Expect = 2.7
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 12/66 (18%)
Query: 273 ALFRQQLKRLAGQKYELKNEEREKQKQTKEMLQIEPADENDISNILQKKKIKEAFKMMKK 332
AL+R+ Q ++ E + K+ +I P D+ I + ++ + + +K
Sbjct: 309 ALYRR------AQGWQGLKEYDQALADLKKAQEIAPEDK-AI-----QAELLKVKQKIKA 356
Query: 333 QKEKAK 338
QK+K K
Sbjct: 357 QKDKEK 362
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase,
oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa}
PDB: 1zx9_A*
Length = 467
Score = 29.8 bits (68), Expect = 2.9
Identities = 5/52 (9%), Positives = 16/52 (30%)
Query: 302 EMLQIEPADENDISNILQKKKIKEAFKMMKKQKEKAKELSKPGLVMKTKDGK 353
+ ++ I + E ++++ + V+ T G+
Sbjct: 206 ARNTLFFREDPAIGEAVTAAFRAEGIEVLEHTQASQVAHMDGEFVLTTTHGE 257
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A
{Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Length = 722
Score = 29.7 bits (67), Expect = 3.6
Identities = 10/108 (9%), Positives = 32/108 (29%)
Query: 298 KQTKEMLQIEPADENDISNILQKKKIKEAFKMMKKQKEKAKELSKPGLVMKTKDGKKINK 357
++ +L ++ + + K+++ + KK + + K
Sbjct: 513 EKIWHLLNLDEVKRWEFRELPAGHKVRKPEILFKKVTDDQIIYFILNYMAKGNPEGARIL 572
Query: 358 HKLKRLKENLEQRKKMKDRKKKAKKQTIFGTPKDLPKSQPFIDHVISF 405
+E++ + K K + L + + + + F
Sbjct: 573 LDKYYKREDVIRVAKEKFGDEAEVVLRRVYKDIKLKEKKEGKEMYVKF 620
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A
{Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Length = 326
Score = 29.1 bits (66), Expect = 3.8
Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 4/50 (8%)
Query: 238 KDLPKSQPFIDHVISFSILDNRIWFRNYQILSEDGALFRQQLKRLAGQKY 287
+P ++ VI R W R + A + + L + Y
Sbjct: 42 AQIPSWHAAVERVIPV---AIRRW-RKAWFSAPIKAERKAFREALQAKNY 87
Score = 29.1 bits (66), Expect = 3.8
Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 4/50 (8%)
Query: 390 KDLPKSQPFIDHVISFSILDNRIWFRNYQILSEDGALFRQQLKRLAGQKY 439
+P ++ VI R W R + A + + L + Y
Sbjct: 42 AQIPSWHAAVERVIPV---AIRRW-RKAWFSAPIKAERKAFREALQAKNY 87
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g*
Length = 550
Score = 29.4 bits (67), Expect = 3.9
Identities = 8/73 (10%), Positives = 26/73 (35%), Gaps = 11/73 (15%)
Query: 317 ILQKKKIKEAFKMMKKQKEKAK------ELSKPGLVMKTKDGKKINKHKLKRLKENLEQ- 369
+K F+ K+ K EL KD ++ ++ + ++
Sbjct: 219 AFKKTFSYAGFEQQPKKFNNPKILSLNVELELK----AEKDNAEVRVEHVEDYQAIVDAE 274
Query: 370 RKKMKDRKKKAKK 382
+ + ++ ++ ++
Sbjct: 275 WQLIFEKLRQVEE 287
>1xfx_A Calmodulin-sensitive adenylate cyclase; protein-protein
interaction, lyase/metal binding protein complex; 3.20A
{Bacillus anthracis} PDB: 1xfw_A* 1xfv_A 1xfy_A 1xfz_A
1y0v_A 1xfu_A
Length = 777
Score = 28.4 bits (62), Expect = 7.3
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 7/98 (7%)
Query: 438 KYELKNEEREKQKQTKEMLQIEPADENDISNILRGDILKKAKKLTAKPIDLKKESDKAET 497
K E NE +K +QT+++L+ P D +I + L G+I L ++ +
Sbjct: 45 KTEFTNETLDKIQQTQDLLKKIPKDVLEIYSELGGEIYFTDIDLVEHKELQDLSEEEKNS 104
Query: 498 RATLTEKKKIKEAFKMMKKQKEKAKELSKPGLVMKTKD 535
+ EK F KK++ P L++ KD
Sbjct: 105 MNSRGEKVPFASRFVFEKKRET-------PKLIINIKD 135
>3pqu_A Transferrin binding protein B; lipoprotein, transferrin receptor,
iron acquisition, vaccine candidate, beta-barrel,
outermembrane; 2.10A {Actinobacillus suis}
Length = 570
Score = 28.4 bits (62), Expect = 8.4
Identities = 13/82 (15%), Positives = 25/82 (30%), Gaps = 5/82 (6%)
Query: 331 KKQKEKAKELSKPGL--VMKTKDGKKINKHKLKRLKENLEQRKKMKDRKKKAKKQTIFGT 388
KK KE+ +L +P L K + N+ + + +
Sbjct: 28 KKTKEELDKLMEPTLGVEAK---IPRRNRALFDKEGNRKATPDTTDELSEAQIMAIWNEN 84
Query: 389 PKDLPKSQPFIDHVISFSILDN 410
++P + D S I +
Sbjct: 85 IDEIPHLKELNDKTTSGLIYHS 106
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter
thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB:
1fxk_B
Length = 107
Score = 26.8 bits (59), Expect = 8.9
Identities = 18/97 (18%), Positives = 46/97 (47%), Gaps = 6/97 (6%)
Query: 427 FRQQLKRLAGQKYELKNEEREKQKQTKEMLQIEPADENDISNILRGDILKKAKKLTAKPI 486
+QQ + ++ QK ++ + E QK +E + A ++ G+IL + K
Sbjct: 13 LQQQAQAISVQKQTVEMQINETQKALEE---LSRAADDAEVYKSSGNILIRVAKDELTE- 68
Query: 487 DLKKESDKAETRATLTEK--KKIKEAFKMMKKQKEKA 521
+L+++ + + R E+ +++ + + M+ ++A
Sbjct: 69 ELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQEA 105
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 28.0 bits (62), Expect = 9.4
Identities = 16/125 (12%), Positives = 34/125 (27%), Gaps = 8/125 (6%)
Query: 283 AGQKYELKNEEREKQKQTKEMLQIEPADENDISNILQKKKIKEAFKMMKKQKEKAKELSK 342
N + + + + +K K A + KE + +
Sbjct: 7 VAASGSHLNGDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDE 66
Query: 343 PGLVMKTKDGKKINKHKLKRLKENLEQRKKMKDRKKK-----AKKQTIFGTPKDLPKSQP 397
++ + + + + K +KKK K QT P +P
Sbjct: 67 VARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRGPKVQT---DPPSVPICDL 123
Query: 398 FIDHV 402
+ + V
Sbjct: 124 YPNGV 128
>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction,
regulation, phosphorylation, G proteins, thioredoxin,
vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB:
1b9y_C 1b9x_C
Length = 245
Score = 27.7 bits (61), Expect = 10.0
Identities = 15/118 (12%), Positives = 48/118 (40%), Gaps = 20/118 (16%)
Query: 285 QKYELKNEEREKQKQTKEMLQIEPADENDISNILQKKKIKEAFKMMKKQKEKAKELSKPG 344
+K++L++E+ + +K+ + +++ + + +KE
Sbjct: 30 RKFKLESEDSDSVAHSKKEI------------------LRQMSSPQSRDDKDSKERFSRK 71
Query: 345 LVMKTKDGKKINKHKLKRLKENLEQRKKMKDRKKKAKKQTIFGTPKDLPKSQPFIDHV 402
+ ++ + +K L++ +R+ M+D +K +G +L + F++ +
Sbjct: 72 MSVQEYELIHKDKEDENCLRK--YRRQCMQDMHQKLSFGPRYGFVYELESGEQFLETI 127
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.132 0.370
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,245,234
Number of extensions: 497443
Number of successful extensions: 2292
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2157
Number of HSP's successfully gapped: 278
Length of query: 569
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 470
Effective length of database: 3,937,614
Effective search space: 1850678580
Effective search space used: 1850678580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.6 bits)