RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3244
(569 letters)
>d2cxha1 c.51.1.2 (A:13-192) Probable ribosomal biogenesis protein
{Archaeon Aeropyrum pernix [TaxId: 56636]}
Length = 180
Score = 72.6 bits (178), Expect = 2e-15
Identities = 27/166 (16%), Positives = 58/166 (34%), Gaps = 13/166 (7%)
Query: 106 RVLIFASRGISFTDRHLMKNLQNMLPHSRPGTKMER-KDTLTVVNEICEMKNCNKCILFE 164
R+L+ SR S R +K+L +P + + R ++ + ++ ++ ++
Sbjct: 3 RILVTTSRRPSPRIRSFVKDLSATIPGA---FRFTRGHYSMEELAREAIIRGADRIVVVG 59
Query: 165 GRLRRDLYMWFANVHEGPSLKCLVESVFTMGELKLTGNSLKGSRPLLSFDEKFSQEPHYR 224
R R + + EGP + S F + + L+ + P L E P
Sbjct: 60 ER-RGNPGIIRVYAVEGPERPDNIVS-FIVKGVSLS-RERRWGLPSLRGGEVLVARPLDS 116
Query: 225 LMQ----ELLTQIFGTPKDLPKSQPFIDHVISFSILDNRIWFRNYQ 266
+ + F P++ ++ LD R ++
Sbjct: 117 GVAVEFADAFVIAFHARLKPPEAAGYV--EAVIESLDARTVAVTFR 160
>d1smyd_ e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus
thermophilus [TaxId: 274]}
Length = 1504
Score = 28.6 bits (63), Expect = 2.8
Identities = 38/340 (11%), Positives = 105/340 (30%), Gaps = 13/340 (3%)
Query: 180 EGPSLKCLVESVFTMGELKLTGNSLKGSRPLLSFDEKFSQEPHYRLMQELLTQIFGTPKD 239
E L V+++ GE + G L + ++S + + R ++ +
Sbjct: 166 ETYPLPPGVDALVKDGEEVVKGQEL--APGVVSRLDGVALYRFPRRVRVEYVKKERAGLR 223
Query: 240 LPKSQPFIDHVISFSILDNRIWFRNYQILSEDGALFRQQLKRLAGQKYELKNEEREKQKQ 299
LP + + + E+G + ++L+ A ++E
Sbjct: 224 LPLAAWVEKEAYKPGEILAELPEPYLFRAEEEGVVELKELEEGAFLVLRREDEPVAT-YF 282
Query: 300 TKEMLQIEPADENDISNILQKKKIKEAFKMMKKQKEKAKELSKPGLVMKTKDGKKINKHK 359
+ + + K +M ++ + E + G + + + K
Sbjct: 283 LPVGMTPLVVHGEIVEKGQPLAEAKGLLRMPRQVRAAQVEAEEEGETVYLTLFLEWTEPK 342
Query: 360 LKRLKENLEQRKKMKDRKKKAKKQTIFGTPKDLPKSQP----FIDHVISFSILDNRIWFR 415
R++ ++ R + K P++ ++ + S ++ R++
Sbjct: 343 DYRVQPHMNVVVPEGARVEAGDKIVAAIDPEEEVIAEAEGVVHLHEPASILVVKARVYPF 402
Query: 416 NYQILSEDGALFRQQLKRLAGQKYELKNEEREKQKQTKEMLQIEPADENDISNILRGDIL 475
+ G G K + R + + ++++ S + +
Sbjct: 403 EDDVEVSTGDRVAPGDVLADGGKVKSDVYGRVEVDLVRNVVRVVE------SYDIDARMG 456
Query: 476 KKAKKLTAKPIDLKKESDKAETRATLTEKKKIKEAFKMMK 515
+A + K +DL+ + + + +A K ++
Sbjct: 457 AEAIQQLLKELDLEALEKELLEEMKHPSRARRAKARKRLE 496
Score = 28.2 bits (62), Expect = 3.4
Identities = 37/305 (12%), Positives = 97/305 (31%), Gaps = 9/305 (2%)
Query: 236 TPKDLPKSQPFIDHVI--SFSILDNRIWFRNYQILSEDGALFRQQLKRLAGQKYELKNEE 293
+ +L + F +++ + N + Q+L+++ ++L+ + Y L
Sbjct: 118 SATELEQVLYFSKYIVLDPKGAILNGVPVEKRQLLTDEEY---RELRYGKQETYPLPPGV 174
Query: 294 REKQKQTKEMLQIEPADENDISNILQKKKIKEAFKMMKKQKEKAKELSKPGLVMKTKDGK 353
K +E+++ + +S + + ++ + +K + + L +
Sbjct: 175 DALVKDGEEVVKGQELAPGVVSRLDGVALYRFPRRVRVEYVKKERAGLRLPLAAWVEKEA 234
Query: 354 KINKHKLKRLKENLEQRKKMK---DRKKKAKKQTIFGTPKDLPKSQPFIDHVISFSILDN 410
L L E R + + + K+ + + +D P + F+ ++ ++
Sbjct: 235 YKPGEILAELPEPYLFRAEEEGVVELKELEEGAFLVLRREDEPVATYFLPVGMTPLVVHG 294
Query: 411 RIWFRNYQILSEDGALFRQQLKRLAGQKYELKNEEREKQKQTKEMLQIEPADENDISNIL 470
I + Q L+E L R + A Q + E E + + N++
Sbjct: 295 EIVEKG-QPLAEAKGLLRMPRQVRAAQVEAEEEGETVYLTLFLEWTEPKDYRVQPHMNVV 353
Query: 471 RGDILKKAKKLTAKPIDLKKESDKAETRATLTEKKKIKEAFKMMKKQKEKAKELSKPGLV 530
+ + +E AE + + + + G
Sbjct: 354 VPEGARVEAGDKIVAAIDPEEEVIAEAEGVVHLHEPASILVVKARVYPFEDDVEVSTGDR 413
Query: 531 MKTKD 535
+ D
Sbjct: 414 VAPGD 418
>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 217
Score = 26.9 bits (59), Expect = 6.0
Identities = 14/121 (11%), Positives = 40/121 (33%), Gaps = 22/121 (18%)
Query: 285 QKYELKNEEREKQKQTKEMLQIEPADENDISNILQKKKIKEAFKMMKKQKEKAKELSKPG 344
+K++L++E+ + K + +M Q K+ +
Sbjct: 17 RKFKLESEDGDSI---------------------PPSKKEILRQMSSPQSRDDKDSKERM 55
Query: 345 LVMKTKDGKKINKHKLKRLKENLEQRKK-MKDRKKKAKKQTIFGTPKDLPKSQPFIDHVI 403
+ ++ + + R++ M+D +K +G +L + F++ +
Sbjct: 56 SRKMSIQEYELIHQDKEDEGCLRKYRRQCMQDMHQKLSFGPRYGFVYELETGEQFLETIE 115
Query: 404 S 404
Sbjct: 116 K 116
>d1hn0a2 b.18.1.17 (A:25-234) Chondroitin ABC lyase I, N-terminal
domain {Proteus vulgaris [TaxId: 585]}
Length = 210
Score = 26.5 bits (58), Expect = 7.5
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 373 MKDRKKKAKKQTI-FGTPKDLPKSQPFIDHVISFSILDNRIWFRNYQI 419
R AK +I F P ++ + + +ID ++ FS+ D R + +YQ+
Sbjct: 159 SIGRSLGAKVDSIRFKAPSNVSQGEIYIDRIM-FSVDDARYQWSDYQV 205
Score = 26.5 bits (58), Expect = 8.5
Identities = 10/34 (29%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 234 FGTPKDLPKSQPFIDHVISFSILDNRIWFRNYQI 267
F P ++ + + +ID ++ FS+ D R + +YQ+
Sbjct: 173 FKAPSNVSQGEIYIDRIM-FSVDDARYQWSDYQV 205
>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle
and C-terminal domains {Thermus thermophilus [TaxId:
274]}
Length = 318
Score = 26.8 bits (58), Expect = 8.0
Identities = 13/111 (11%), Positives = 34/111 (30%), Gaps = 5/111 (4%)
Query: 360 LKRLKENLEQRKKMKDRKKKAKKQTIFGTPKDLPKSQPFIDH---VISFSILDNRIWFRN 416
L+ L + L +R+ + + + + + LP +D+ +
Sbjct: 9 LENLAQALARREAVLRQDPEGGYRLVHAEGDLLP--GLVVDYYAGHAVVQATAHAWEGLL 66
Query: 417 YQILSEDGALFRQQLKRLAGQKYELKNEEREKQKQTKEMLQIEPADENDIS 467
Q+ + L + + EL+ + E+ + E +
Sbjct: 67 PQVAEALRPHVQSVLAKNDARTRELEGLPLYVRPLLGEVPERVQVQEGRVR 117
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.132 0.370
Gapped
Lambda K H
0.267 0.0521 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,049,091
Number of extensions: 102834
Number of successful extensions: 627
Number of sequences better than 10.0: 1
Number of HSP's gapped: 618
Number of HSP's successfully gapped: 101
Length of query: 569
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 479
Effective length of database: 1,171,896
Effective search space: 561338184
Effective search space used: 561338184
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.4 bits)