BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3251
(959 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VYS3|RENT1_DROME Regulator of nonsense transcripts 1 homolog OS=Drosophila
melanogaster GN=Upf1 PE=1 SV=2
Length = 1180
Score = 1417 bits (3669), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 690/966 (71%), Positives = 789/966 (81%), Gaps = 68/966 (7%)
Query: 1 MSVDAYGPSSQTLTFLDTEETDLI-GGDTQGSEFDFTDFTLPS--QSQTQASQLDSVNQI 57
MSVD Y PSS L+FLD ++ +L+ G DTQ +++D+ DFT+PS QSQTQ QL+ +
Sbjct: 1 MSVDTYAPSS-ALSFLDMDDNELLPGADTQPTQYDYRDFTMPSTSQSQTQNDQLEIAQRC 59
Query: 58 QVNGKQNLDNSNLNLVSQKLHELQFEEEEDDGNEFFNKELPPHACKYCGIHDPAYVIMCN 117
+ L ++ L +LQFEEE+D+ + KELPPHACKYCGIHDPA V+MCN
Sbjct: 60 SAGD----SHPRLASITNDLADLQFEEEDDEPGSSYVKELPPHACKYCGIHDPATVVMCN 115
Query: 118 ICKKWFCNGRGHTSGSHIINHLVRAKHKEVTLHKDGPLGETVLECYTCGVRNIFVLGFIP 177
C+KWFCNGRG TSGSHIINHLVRAKH+EVTLH +GPLGET+LECY+CGVRN+FVLGFIP
Sbjct: 116 NCRKWFCNGRGSTSGSHIINHLVRAKHREVTLHGEGPLGETILECYSCGVRNVFVLGFIP 175
Query: 178 AKADSVVVLLCRTPCAAQNSLKDMNWDQEQWKPLIADRSFLSWLVKVPTEQEQQRGRQVT 237
AKADSVVVLLCR PCAAQNSLKDMNWDQEQWKPLIADR FL+WLVK P+EQ Q R RQ++
Sbjct: 176 AKADSVVVLLCRQPCAAQNSLKDMNWDQEQWKPLIADRCFLAWLVKQPSEQGQLRARQIS 235
Query: 238 SAQIAKLEEVWKDNAEATFQDLEKPGVDEDPHQVLLRYEDGYQYQNIFGPLVKLEADYDK 297
+AQI KLEE+WK+N EATFQDLEKPG+D +P
Sbjct: 236 AAQINKLEELWKENIEATFQDLEKPGIDSEP----------------------------- 266
Query: 298 RLKESQTQENVTVRWDVGLNKKSIAYFSLAKTDGDGYQYQNIFGPLVKLEADYDKRLKES 357
+V +R++ DGYQY+ FGPLV+LEA+YD++LKES
Sbjct: 267 --------AHVLLRYE------------------DGYQYEKTFGPLVRLEAEYDQKLKES 300
Query: 358 QTQENVTVRWDVGLNKKSIAYFSLAKTDGDMRLMQGDELKLRYSYDASKTWSGLGHVIKI 417
TQEN+ VRWDVGLNKK+IAYF+LAKTD DM+LM GDEL+L Y + WS +GHVIK+
Sbjct: 301 ATQENIEVRWDVGLNKKTIAYFTLAKTDSDMKLMHGDELRLHYVGELYNPWSEIGHVIKV 360
Query: 418 PDNFGDEVGLELKSSAGAPTEATTGFSVDFIWKSTSFDRMQLALRKFAVDDQSVSAYIYH 477
PDNFGD+VGLELKSS AP + T+ F+VDFIWK TSFDRM AL KFA+D SVS +IY
Sbjct: 361 PDNFGDDVGLELKSSTNAPVKCTSNFTVDFIWKCTSFDRMTRALCKFAIDRNSVSNFIYS 420
Query: 478 RLLGH----NVDEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHAIQRPLSLIQGPPGTGKT 533
RLLGH + DEVLFR PK FSAP+LPDLNRSQVYAVKHA+QRPLSLIQGPPGTGKT
Sbjct: 421 RLLGHGRADSNDEVLFRGPQPKLFSAPHLPDLNRSQVYAVKHALQRPLSLIQGPPGTGKT 480
Query: 534 VTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRTGLKVVRVCAKSREAIDSPVSFL 593
VTSATIVYQLVK G VLVCAPSN AVDQLTEKIHRT LKVVRVCAKSREAIDSPVSFL
Sbjct: 481 VTSATIVYQLVKLHGGTVLVCAPSNTAVDQLTEKIHRTNLKVVRVCAKSREAIDSPVSFL 540
Query: 594 ALHNQIRNMEMNSELKKLLQLKEETGELSSADEKRYRMLKKNAEKSLLDNADVICCTCVG 653
ALHNQIRNME NSELKKL QLK+ETGELSSADEKRYR LK+ AE LL+ ADVICCTCVG
Sbjct: 541 ALHNQIRNMETNSELKKLQQLKDETGELSSADEKRYRNLKRAAENQLLEAADVICCTCVG 600
Query: 654 AGDPRLLKIKFHSILIDESMQATEPECMVPVILGAKQLILVGDHCQLGPVVMCKKAARAG 713
AGD RL ++KF SILIDESMQ+TEPECMVPV+LGAKQLILVGDHCQLGPVVMCKKAARAG
Sbjct: 601 AGDGRLSRVKFTSILIDESMQSTEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAARAG 660
Query: 714 LSQSLFERLVVLGIRPFRLEVQYRMHPELSKFPSNFFYEGSLQNGVCADERKLSKIDFPW 773
LSQSLFERLVVLGIRPFRLEVQYRMHPELS+FPSNFFYEGSLQNGVCA++R+L K+DFPW
Sbjct: 661 LSQSLFERLVVLGIRPFRLEVQYRMHPELSQFPSNFFYEGSLQNGVCAEDRRL-KLDFPW 719
Query: 774 PVPDKPMLFYVTQGQEEIAGSGTSYVNRTEASNVEKITTRFIRCGMKPEQIGVITPYEGQ 833
P P++PM F VTQGQEEIAGSGTS++NRTEA+NVEKITTRF++ G+KPEQIG+ITPYEGQ
Sbjct: 720 PQPERPMFFLVTQGQEEIAGSGTSFLNRTEAANVEKITTRFLKAGIKPEQIGIITPYEGQ 779
Query: 834 RAFLVQHMQYQGSLPAKIYQEIEVASVDAFQGREKDLIIMSCVRSNDHQGIGFLNDPRRL 893
RA+LVQ+MQYQGSL +++YQEIE+ASVDAFQGREKD+IIMSCVRSN+ QGIGFLNDPRRL
Sbjct: 780 RAYLVQYMQYQGSLHSRLYQEIEIASVDAFQGREKDIIIMSCVRSNERQGIGFLNDPRRL 839
Query: 894 NVALTRAKYGIIVIGNPKVLSKQPLWNNLLNFYKEQKVLVEGPLNNLKESLILFSKPKQY 953
NVALTRAK+GII++GNPKVL+KQ LWN+LLNFYK++KVLVEG LNNLKESLI F KPK+
Sbjct: 840 NVALTRAKFGIIIVGNPKVLAKQQLWNHLLNFYKDRKVLVEGSLNNLKESLIHFQKPKKL 899
Query: 954 FKKNNM 959
N+
Sbjct: 900 VNSMNI 905
>sp|Q92900|RENT1_HUMAN Regulator of nonsense transcripts 1 OS=Homo sapiens GN=UPF1 PE=1
SV=2
Length = 1129
Score = 1400 bits (3623), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 680/996 (68%), Positives = 780/996 (78%), Gaps = 99/996 (9%)
Query: 1 MSVDAYGPSSQTLTFLDTEETDLIGGDTQGSEFDFTDFTLPSQSQTQAS----------- 49
MSV+AYGPSSQTLTFLDTEE +L+G DTQGSEF+FTDFTLPSQ+QT
Sbjct: 1 MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGPGGGGAG 60
Query: 50 ------------QLDSVNQIQVNGKQNLDNSNLN----LVSQKLHELQFEEEEDDGNEFF 93
QLD+ QV + L N ++ SQ L EL FEE+E+D ++
Sbjct: 61 GPGGAGAGAAAGQLDA----QVGPEGILQNGAVDDSVAKTSQLLAELNFEEDEED--TYY 114
Query: 94 NKELPPHACKYCGIHDPAYVIMCNICKKWFCNGRGHTSGSHIINHLVRAKHKEVTLHKDG 153
K+LP HAC YCGIHDPA V+ CN KKWFCNGRG+TSGSHI+NHLVRAK KEVTLHKDG
Sbjct: 115 TKDLPIHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDG 174
Query: 154 PLGETVLECYTCGVRNIFVLGFIPAKADSVVVLLCRTPCAAQNSLKDMNWDQEQWKPLIA 213
PLGETVLECY CG RN+F+LGFIPAKADSVVVLLCR PCA+Q+SLKD+NWD QW+PLI
Sbjct: 175 PLGETVLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQ 234
Query: 214 DRSFLSWLVKVPTEQEQQRGRQVTSAQIAKLEEVWKDNAEATFQDLEKPGVDEDPHQVLL 273
DR FLSWLVK+P+EQEQ R RQ+T+ QI KLEE+WK+N AT +DLEKPGVDE+P
Sbjct: 235 DRCFLSWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEP----- 289
Query: 274 RYEDGYQYQNIFGPLVKLEADYDKRLKESQTQENVTVRWDVGLNKKSIAYFSLAKTDGDG 333
++V +R++ D
Sbjct: 290 --------------------------------QHVLLRYE------------------DA 299
Query: 334 YQYQNIFGPLVKLEADYDKRLKESQTQENVTVRWDVGLNKKSIAYFSLAKTDG------- 386
YQYQNIFGPLVKLEADYDK+LKESQTQ+N+TVRWD+GLNKK IAYF+L KTD
Sbjct: 300 YQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVI 359
Query: 387 ----DMRLMQGDELKLRYSYDASKTWSGLGHVIKIPDNFGDEVGLELKSSAGAPTEATTG 442
DMRLMQGDE+ LRY D + W G+GHVIK+PDN+GDE+ +EL+SS GAP E T
Sbjct: 360 IWLRDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHN 419
Query: 443 FSVDFIWKSTSFDRMQLALRKFAVDDQSVSAYIYHRLLGHNVDEVLFRCHLPKHFSAPNL 502
F VDF+WKSTSFDRMQ AL+ FAVD+ SVS YIYH+LLGH V++V+ +C LPK F+A L
Sbjct: 420 FQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGL 479
Query: 503 PDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVD 562
PDLN SQVYAVK +QRPLSLIQGPPGTGKTVTSATIVY L +Q PVLVCAPSNIAVD
Sbjct: 480 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVD 539
Query: 563 QLTEKIHRTGLKVVRVCAKSREAIDSPVSFLALHNQIRNMEMNSELKKLLQLKEETGELS 622
QLTEKIH+TGLKVVR+CAKSREAIDSPVSFLALHNQIRNM+ EL+KL QLK+ETGELS
Sbjct: 540 QLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELS 599
Query: 623 SADEKRYRMLKKNAEKSLLDNADVICCTCVGAGDPRLLKIKFHSILIDESMQATEPECMV 682
SADEKRYR LK+ AE+ LL NADVICCTCVGAGDPRL K++F SILIDES QATEPECMV
Sbjct: 600 SADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMV 659
Query: 683 PVILGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVLGIRPFRLEVQYRMHPEL 742
PV+LGAKQLILVGDHCQLGPVVMCKKAA+AGLSQSLFERLVVLGIRP RL+VQYRMHP L
Sbjct: 660 PVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPAL 719
Query: 743 SKFPSNFFYEGSLQNGVCADERKLSKIDFPWPVPDKPMLFYVTQGQEEIAGSGTSYVNRT 802
S FPSN FYEGSLQNGV A +R DF WP PDKPM FYVTQGQEEIA SGTSY+NRT
Sbjct: 720 SAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRT 779
Query: 803 EASNVEKITTRFIRCGMKPEQIGVITPYEGQRAFLVQHMQYQGSLPAKIYQEIEVASVDA 862
EA+NVEKITT+ ++ G KP+QIG+ITPYEGQR++LVQ+MQ+ GSL K+YQE+E+ASVDA
Sbjct: 780 EAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDA 839
Query: 863 FQGREKDLIIMSCVRSNDHQGIGFLNDPRRLNVALTRAKYGIIVIGNPKVLSKQPLWNNL 922
FQGREKD II+SCVR+N+HQGIGFLNDPRRLNVALTRA+YG+I++GNPK LSKQPLWN+L
Sbjct: 840 FQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHL 899
Query: 923 LNFYKEQKVLVEGPLNNLKESLILFSKPKQYFKKNN 958
LN+YKEQKVLVEGPLNNL+ESL+ FSKP++ N
Sbjct: 900 LNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTIN 935
>sp|Q9EPU0|RENT1_MOUSE Regulator of nonsense transcripts 1 OS=Mus musculus GN=Upf1 PE=1
SV=2
Length = 1124
Score = 1398 bits (3619), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 677/991 (68%), Positives = 779/991 (78%), Gaps = 94/991 (9%)
Query: 1 MSVDAYGPSSQTLTFLDTEETDLIGGDTQGSEFDFTDFTLPSQSQTQAS----------- 49
MSV+AYGPSSQTLTFLDTEE +L+G DTQGSEF+FTDFTLPSQ+QT
Sbjct: 1 MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGAGGPGGA 60
Query: 50 -------QLDSVNQIQVNGKQNLDNSNLN----LVSQKLHELQFEEEEDDGNEFFNKELP 98
QLD+ QV + L N ++ SQ L EL FEE+E+D ++ K+LP
Sbjct: 61 GAGGAAGQLDA----QVGPEGILQNGAVDDSVAKTSQLLAELNFEEDEED--TYYTKDLP 114
Query: 99 PHACKYCGIHDPAYVIMCNICKKWFCNGRGHTSGSHIINHLVRAKHKEVTLHKDGPLGET 158
HAC YCGIHDPA V+ CN KKWFCNGRG+TSGSHI+NHLVRAK KEVTLHKDGPLGET
Sbjct: 115 VHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGET 174
Query: 159 VLECYTCGVRNIFVLGFIPAKADSVVVLLCRTPCAAQNSLKDMNWDQEQWKPLIADRSFL 218
VLECY CG RN+F+LGFIPAKADSVVVLLCR PCA+Q+SLKD+NWD QW+PLI DR FL
Sbjct: 175 VLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFL 234
Query: 219 SWLVKVPTEQEQQRGRQVTSAQIAKLEEVWKDNAEATFQDLEKPGVDEDPHQVLLRYEDG 278
SWLVK+P+EQEQ R RQ+T+ QI KLEE+WK+N AT +DLEKPGVDE+P
Sbjct: 235 SWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEP---------- 284
Query: 279 YQYQNIFGPLVKLEADYDKRLKESQTQENVTVRWDVGLNKKSIAYFSLAKTDGDGYQYQN 338
++V +R++ D YQYQN
Sbjct: 285 ---------------------------QHVLLRYE------------------DAYQYQN 299
Query: 339 IFGPLVKLEADYDKRLKESQTQENVTVRWDVGLNKKSIAYFSLAKTDG-----------D 387
IFGPLVKLEADYDK+LKESQTQ+N+TVRWD+GLNKK IA+F+L KTD D
Sbjct: 300 IFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAFFTLPKTDSGNEDLVIIWLRD 359
Query: 388 MRLMQGDELKLRYSYDASKTWSGLGHVIKIPDNFGDEVGLELKSSAGAPTEATTGFSVDF 447
MRLMQGDE+ LRY D + W G+GHVIK+PDN+GDE+ +EL+SS GAP E T F VDF
Sbjct: 360 MRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDF 419
Query: 448 IWKSTSFDRMQLALRKFAVDDQSVSAYIYHRLLGHNVDEVLFRCHLPKHFSAPNLPDLNR 507
+WKSTSFDRMQ AL+ FAVD+ SVS YIYH+LLGH V++V+ +C LPK F+A LPDLN
Sbjct: 420 VWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVVIKCQLPKRFTAQGLPDLNH 479
Query: 508 SQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEK 567
SQVYAVK +QRPLSLIQGPPGTGKTVTSATIVY L +Q PVLVCAPSNIAVDQLTEK
Sbjct: 480 SQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEK 539
Query: 568 IHRTGLKVVRVCAKSREAIDSPVSFLALHNQIRNMEMNSELKKLLQLKEETGELSSADEK 627
IH+TGLKVVR+CAKSREAIDSPVSFLALHNQIRNM+ EL+KL QLK+ETGELSSADEK
Sbjct: 540 IHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEK 599
Query: 628 RYRMLKKNAEKSLLDNADVICCTCVGAGDPRLLKIKFHSILIDESMQATEPECMVPVILG 687
RYR LK+ AE+ LL NADVICCTCVGAGDPRL K++F SILIDES QATEPECMVPV+LG
Sbjct: 600 RYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLG 659
Query: 688 AKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVLGIRPFRLEVQYRMHPELSKFPS 747
AKQLILVGDHCQLGPVVMCKKAA+AGLSQSLFERLVVLGIRP RL+VQYRMHP LS FPS
Sbjct: 660 AKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPS 719
Query: 748 NFFYEGSLQNGVCADERKLSKIDFPWPVPDKPMLFYVTQGQEEIAGSGTSYVNRTEASNV 807
N FYEGSLQNGV A +R DF WP PDKPM FYVTQGQEEIA SGTSY+NRTEA+NV
Sbjct: 720 NIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANV 779
Query: 808 EKITTRFIRCGMKPEQIGVITPYEGQRAFLVQHMQYQGSLPAKIYQEIEVASVDAFQGRE 867
EKITT+ ++ G KP+QIG+ITPYEGQR++LVQ+MQ+ GSL K+YQE+E+ASVDAFQGRE
Sbjct: 780 EKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGRE 839
Query: 868 KDLIIMSCVRSNDHQGIGFLNDPRRLNVALTRAKYGIIVIGNPKVLSKQPLWNNLLNFYK 927
KD II+SCVR+N+HQGIGFLNDPRRLNVALTRA+YG+I++GNPK LSKQPLWN+LL++YK
Sbjct: 840 KDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLSYYK 899
Query: 928 EQKVLVEGPLNNLKESLILFSKPKQYFKKNN 958
EQK LVEGPLNNL+ESL+ FSKP++ N
Sbjct: 900 EQKALVEGPLNNLRESLMQFSKPRKLVNTVN 930
>sp|Q98TR3|RENT1_TAKRU Putative regulator of nonsense transcripts 1 OS=Takifugu rubripes
GN=rent1 PE=3 SV=1
Length = 1097
Score = 1349 bits (3491), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 665/967 (68%), Positives = 768/967 (79%), Gaps = 72/967 (7%)
Query: 1 MSVDAYGPSSQTLTFLDTEETDLIGGDTQGSEFDFTDFTLPSQSQTQA---SQLDSVNQI 57
MSV+AYGPSSQTLTFLDTEET+L+G DTQGSE+DFTDFTLPSQ+QTQ SQLD+
Sbjct: 1 MSVEAYGPSSQTLTFLDTEETELLGADTQGSEYDFTDFTLPSQTQTQGHTQSQLDN---- 56
Query: 58 QVNGKQN-LDNSNLN----LVSQKLHELQFEEEEDDGNEFFNKELPPHACK-YCGIHDPA 111
Q+NG + L N ++ SQ L EL FEE+E+D ++ K+LP HAC+ YCGIHDPA
Sbjct: 57 QLNGPDDGLHNGGMDDSVAKASQLLAELNFEEDEED--TYYTKDLPVHACRSYCGIHDPA 114
Query: 112 YVIMCNICKKWFCNGRGHTSGSHIINHLVRAKHKEVTLHKDGPLGETVLECYTCGVRNIF 171
V+ CN KKWFCNGRG+TSGSHI+NHLVRAK KEVTLHKDGPLGETVLECY CG RN+F
Sbjct: 115 CVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVF 174
Query: 172 VLGFIPAKADSVVVLLCRTPCAAQNSLKDMNWDQEQWKPLIADRSFLSWLVKVPTEQEQQ 231
+LGFIPAKADSVVVLLCR PCA+Q+SLKD+NWD QW+PLI DR FLSWLVK+P+EQEQ
Sbjct: 175 LLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQL 234
Query: 232 RGRQVTSAQIAKLEEVWKDNAEATFQDLEKPGVDEDPHQVLLRYEDGYQYQNIFGPLVKL 291
R RQ+T+ QI KLEE+WKDN AT +DLEKPGVDE+P
Sbjct: 235 RARQITAQQINKLEELWKDNPCATLEDLEKPGVDEEP----------------------- 271
Query: 292 EADYDKRLKESQTQENVTVRWDVGLNKKSIAYFSLAKTDGDGYQYQNIFGPLVKLEADYD 351
++V +R++ D YQYQNIFGPLVKLEADYD
Sbjct: 272 --------------QHVLLRYE------------------DAYQYQNIFGPLVKLEADYD 299
Query: 352 KRLKESQTQENVTVRWDVGLNKKSIAYFSLAKTDGDMRLMQGDELKLRYSYDASKTWSGL 411
K+LKESQTQ+N+TVRWD+GLNKK IAYF+L KTD DMRLMQGDE+ LRY D + W G+
Sbjct: 300 KKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPLWKGI 359
Query: 412 GHVIKIPDNFGDEVGLELKSSAGAPTEATTGFSVDFIWKSTSFDRMQLALRKFAVDDQSV 471
GHVIK+PD++GDE+ +EL++S GAP E + VDF+WKSTSFDRMQ AL+ FAVD+ SV
Sbjct: 360 GHVIKVPDSYGDEIAIELRTSVGAPVEIPHNYQVDFVWKSTSFDRMQSALKTFAVDETSV 419
Query: 472 SAYIYHRLLGHNVDEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHAIQRPLSLIQGPPGTG 531
S YIYH+LLGH V++V +C LPK F+A LPDLN SQVYAVK +QRPLSLIQGPPGTG
Sbjct: 420 SGYIYHKLLGHEVEDVTIKCQLPKRFTANGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTG 479
Query: 532 KTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRTGLKVVRVCAKSREAIDSPVS 591
KTVTSATIVY L +Q PVLVCAPSNIAVDQLTEKI +TGLKVVR+CAKSREAI+SPVS
Sbjct: 480 KTVTSATIVYHLSRQGNGPVLVCAPSNIAVDQLTEKIDKTGLKVVRLCAKSREAIESPVS 539
Query: 592 FLALHNQIRNMEMNSELKKLLQLKEETGELSSADEKRYRMLKKNAEKSLLDNADVICCTC 651
FLALHNQI NM+ EL+KL QLK+ETGELSSADEKRYR LK+ AE+ LL NADVI CTC
Sbjct: 540 FLALHNQISNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVIWCTC 599
Query: 652 VGAGDPRLLKIKFHSILIDESMQATEPECMVPVILGAKQLILVGDHCQLGPVVMCKKAAR 711
V AGDPRL K++F SILIDES QATEP+C+ PV LGAKQLIL G+ VMCKKAA+
Sbjct: 600 VRAGDPRLAKMQFRSILIDESTQATEPKCIGPVELGAKQLIL-GEITASWSCVMCKKAAK 658
Query: 712 AGLSQSLFERLVVLGIRPFRLEVQYRMHPELSKFPSNFFYEGSLQNGVCADERKLSKIDF 771
AGLSQSLFERLVVLGIRP RL+VQYRMHP LS FPSN FYEGSLQNGV A +R DF
Sbjct: 659 AGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAGDRIKKGFDF 718
Query: 772 PWPVPDKPMLFYVTQGQEEIAGSGTSYVNRTEASNVEKITTRFIRCGMKPEQIGVITPYE 831
WP P+KPM FYVTQGQEEIA SGTSY+NRTEA+NVEKITTR ++ G KP+QIG+ITPYE
Sbjct: 719 QWPQPEKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYE 778
Query: 832 GQRAFLVQHMQYQGSLPAKIYQEIEVASVDAFQGREKDLIIMSCVRSNDHQGIGFLNDPR 891
GQR++LVQ+MQ+ GSL K+YQ +E+ASVDAFQGREKD II+SCVR+N+HQGIGFLNDPR
Sbjct: 779 GQRSYLVQYMQFSGSLHTKLYQ-VEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPR 837
Query: 892 RLNVALTRAKYGIIVIGNPKVLSKQPLWNNLLNFYKEQKVLVEGPLNNLKESLILFSKPK 951
RLNVALTRAKYG+I++GNPK LSKQPLWNNLLN YKEQKVLVEGPLNNL+ESL+ FSKP+
Sbjct: 838 RLNVALTRAKYGVIIVGNPKALSKQPLWNNLLNNYKEQKVLVEGPLNNLRESLMQFSKPR 897
Query: 952 QYFKKNN 958
+ N
Sbjct: 898 KLVNTIN 904
>sp|Q9FJR0|RENT1_ARATH Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana
GN=UPF1 PE=1 SV=2
Length = 1254
Score = 1134 bits (2933), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 541/895 (60%), Positives = 671/895 (74%), Gaps = 61/895 (6%)
Query: 70 LNLVSQKLHELQFEEE-EDDGNEFFNKELPPHACKYCGIHDPAYVIMCNI--CKKWFCNG 126
++ ++ + L FEE +DDG ++ + HACKYCGI +PA V+ CN+ C+KWFCN
Sbjct: 107 VDALAAGVGNLNFEETGDDDGFDYGKNDFTEHACKYCGISNPACVVRCNVASCRKWFCNS 166
Query: 127 RGHTSGSHIINHLVRAKHKEVTLHKDGPLGETVLECYTCGVRNIFVLGFIPAKADSVVVL 186
RG+TSGSHI+NHLVRAKHKEV LH+D PLGET+LECY CG RN+F+LGFI AK DSVVVL
Sbjct: 167 RGNTSGSHIVNHLVRAKHKEVCLHRDSPLGETILECYNCGCRNVFLLGFISAKTDSVVVL 226
Query: 187 LCRTPCAAQNSLKDMNWDQEQWKPLIADRSFLSWLVKVPTEQEQQRGRQVTSAQIAKLEE 246
LCR PC N+LKDMNWD QW PLI DR FL WLVKVP+EQEQ R RQ+++ QI K+EE
Sbjct: 227 LCRDPCLNVNALKDMNWDLSQWCPLIDDRCFLPWLVKVPSEQEQLRARQISAQQINKIEE 286
Query: 247 VWKDNAEATFQDLEKPGVDEDPHQVLLRYEDGYQYQNIFGPLVKLEADYDKRLKESQTQE 306
+WK N +AT +DLEKPGVD++P V +YED YQYQN+F PL+KLEADYDK +KESQ++E
Sbjct: 287 LWKTNPDATLEDLEKPGVDDEPQPVQPKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKE 346
Query: 307 NVTVRWDVGLNKKSIAYFSLAKTDGDGYQYQNIFGPLVKLEADYDKRLKESQTQENVTVR 366
N+TVRWD+GLNKK +AYF K + + ++L + RL+ S
Sbjct: 347 NLTVRWDIGLNKKRVAYFVFPKEENE-----------LRLVPGDELRLRYS--------- 386
Query: 367 WDVGLNKKSIAYFSLAKTDGDMRLMQGDELKLRYSYDASKTWSGLGHVIKIPDNFGDEVG 426
GD + +W +GHVIK+ +EV
Sbjct: 387 --------------------------GDAVH--------PSWQSVGHVIKLTAQ--EEVA 410
Query: 427 LELKSSAGAPTEATTGFSVDFIWKSTSFDRMQLALRKFAVDDQSVSAYIYHRLLGHNVDE 486
LEL+++ G P + GFSVDF+WKSTSFDRMQ A++ FAVD+ SVS YIYH+LLGH V+
Sbjct: 411 LELRANQGVPIDVNHGFSVDFVWKSTSFDRMQGAMKNFAVDETSVSGYIYHQLLGHEVEA 470
Query: 487 VLFRCHLPKHFSAPNLPDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQ 546
+ R LP+ F P LP+LN SQV AVK +Q+P+SLIQGPPGTGKTVTSA IVY + KQ
Sbjct: 471 QMVRNTLPRRFGVPGLPELNASQVNAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQ 530
Query: 547 TGSPVLVCAPSNIAVDQLTEKIHRTGLKVVRVCAKSREAIDSPVSFLALHNQIRNMEMN- 605
VLVCAPSN+AVDQL EKI TGLKVVR+CAKSREA+ SPV +L LH Q+R+++ +
Sbjct: 531 GQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEYLTLHYQVRHLDTSE 590
Query: 606 -SELKKLLQLKEETGELSSADEKRYRMLKKNAEKSLLDNADVICCTCVGAGDPRLLKIKF 664
SEL KL QLK+E GELSS+DEK+Y+ LK+ E+ + +ADVICCTCVGA D RL +F
Sbjct: 591 KSELHKLQQLKDEQGELSSSDEKKYKNLKRATEREITQSADVICCTCVGAADLRLSNFRF 650
Query: 665 HSILIDESMQATEPECMVPVILGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVV 724
+LIDES QATEPEC++P++LG KQ++LVGDHCQLGPV+MCKKAARAGL+QSLFERLV
Sbjct: 651 RQVLIDESTQATEPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVT 710
Query: 725 LGIRPFRLEVQYRMHPELSKFPSNFFYEGSLQNGVCADERKLSKIDFPWPVPDKPMLFYV 784
LGI+P RL+VQYRMHP LS+FPSN FYEG+LQNGV ER+ + IDFPWPVP++PM FYV
Sbjct: 711 LGIKPIRLQVQYRMHPALSEFPSNSFYEGTLQNGVTIIERQTTGIDFPWPVPNRPMFFYV 770
Query: 785 TQGQEEIAGSGTSYVNRTEASNVEKITTRFIRCGMKPEQIGVITPYEGQRAFLVQHMQYQ 844
GQEEI+ SGTSY+NRTEA+NVEK+ T F++ G+ P QIGVITPYEGQRA++V +M
Sbjct: 771 QLGQEEISASGTSYLNRTEAANVEKLVTAFLKSGVVPSQIGVITPYEGQRAYIVNYMARN 830
Query: 845 GSLPAKIYQEIEVASVDAFQGREKDLIIMSCVRSNDHQGIGFLNDPRRLNVALTRAKYGI 904
GSL ++Y+EIEVASVD+FQGREKD II+SCVRSN+HQGIGFLNDPRRLNVALTRA+YGI
Sbjct: 831 GSLRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGI 890
Query: 905 IVIGNPKVLSKQPLWNNLLNFYKEQKVLVEGPLNNLKESLILFSKPKQYFKKNNM 959
+++GNPKVLSKQPLWN LL YKE + LVEGPLNNLK+S++ F KP++ + +
Sbjct: 891 VILGNPKVLSKQPLWNGLLTHYKEHECLVEGPLNNLKQSMVQFQKPRKIYNDRRL 945
>sp|Q9HEH1|RENT1_NEUCR Regulator of nonsense transcripts 1 homolog OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=2E4.130 PE=3 SV=1
Length = 1093
Score = 1082 bits (2799), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 512/866 (59%), Positives = 638/866 (73%), Gaps = 60/866 (6%)
Query: 95 KELPPHACKYCGIHDPAYVIMCNICKKWFCNGRGHTSGSHIINHLVRAKHKEVTLHKDGP 154
KELPPHAC YCGIH P+ V+ C C KWFC+ +G SHI+NHLVRA+HKEV LH +
Sbjct: 96 KELPPHACAYCGIHSPSSVVKCLTCNKWFCSAKGSAFSSHIVNHLVRARHKEVQLHPESS 155
Query: 155 LGETVLECYTCGVRNIFVLGFIPAKADSVVVLLCRTPCAAQNSLKDMNWDQEQWKPLIAD 214
LG+TVLECY CG +N+F+LGFIPAK+D+VVVLLCR PC A S KDM+WD +W+PLI D
Sbjct: 156 LGDTVLECYNCGTKNVFILGFIPAKSDTVVVLLCRQPCGASTSTKDMSWDISRWQPLIED 215
Query: 215 RSFLSWLVKVPTEQEQQRGRQVTSAQIAKLEEVWKDNAEATFQDLEK-PGVDEDPHQVLL 273
R+FL+WLV PT+ EQ R R +T IAKLEE+WK+ AT DLEK GVD+DPH VLL
Sbjct: 216 RAFLNWLVTPPTDAEQLRARHLTPPMIAKLEEMWKEAPNATVADLEKTAGVDDDPHPVLL 275
Query: 274 RYEDGYQYQNIFGPLVKLEADYDKRLKESQTQENVTVRWDVGLNKKSIAYFSLAKTDGDG 333
+ YD D
Sbjct: 276 K--------------------YD-----------------------------------DP 280
Query: 334 YQYQNIFGPLVKLEADYDKRLKESQTQENVTVRWDVGLNKKSIAYFSLAKTD-GDMRLMQ 392
Y YQNIFGPLVK+E+DYDK+LKE+Q+++ + VRW +GLN K +A F L K + GD++L
Sbjct: 281 YHYQNIFGPLVKMESDYDKKLKEAQSEDGLQVRWHLGLNSKHVASFILPKIESGDVKLAV 340
Query: 393 GDELKLRYSYDASKTWSGLGHVIKIPDNFGDEVGLELKSSA---GAPTEATTGFSVDFIW 449
GDE++L+Y + W G+G+VIKIP+N DEV +EL+ SA PTE T FS D++W
Sbjct: 341 GDEMRLKYKGELRPPWEGVGYVIKIPNNQSDEVEVELRKSANDKSVPTECTHNFSADYVW 400
Query: 450 KSTSFDRMQLALRKFAVDDQSVSAYIYHRLLGHNVDEVLFRCHLPKHFSAPNLPDLNRSQ 509
K+TS+DRMQLA++ FAVD+ SVS YI+H+LLGH V + +PK F P LP+LN SQ
Sbjct: 401 KATSYDRMQLAMKTFAVDEMSVSGYIFHKLLGHEVQVAPTKITMPKKFHVPGLPELNASQ 460
Query: 510 VYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIH 569
+ A+K + PLSLIQGPPGTGKTVTSATI+Y L K + S VLVCAPSN+AVDQL E+IH
Sbjct: 461 IAAIKQVLSNPLSLIQGPPGTGKTVTSATIIYHLAKMSNSQVLVCAPSNVAVDQLCERIH 520
Query: 570 RTGLKVVRVCAKSREAIDSPVSFLALHNQIRNMEMNSELKKLLQLKEETGELSSADEKRY 629
RTGLKVVR+ AKSRE ++S VSFLALH Q+R N EL L++LK ETGELSS DEKR+
Sbjct: 521 RTGLKVVRLTAKSREDVESSVSFLALHEQVRMNTTNKELDGLVKLKTETGELSSQDEKRF 580
Query: 630 RMLKKNAEKSLLDNADVICCTCVGAGDPRLLKIKFHSILIDESMQATEPECMVPVILGAK 689
+ L + AE+ +L NADV+CCTCVGAGDPRL K+KF ++LIDES Q+ EPECM+P++LG K
Sbjct: 581 KQLTRQAEREILQNADVVCCTCVGAGDPRLSKMKFRNVLIDESTQSAEPECMIPLVLGCK 640
Query: 690 QLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVLGIRPFRLEVQYRMHPELSKFPSNF 749
Q++LVGDH QLGPV+M KKAA+AGL+QSLFERLV L P RL+VQYRMHP LS+FPSN
Sbjct: 641 QVVLVGDHKQLGPVIMNKKAAKAGLNQSLFERLVKLQFTPIRLKVQYRMHPCLSEFPSNM 700
Query: 750 FYEGSLQNGVCADERKLSKIDFPWPVPDKPMLFYVTQGQEEIAGSGTSYVNRTEASNVEK 809
FYEGSLQNGV A ER +DFPWPVP+ PM+F+ G EEI+ SGTSY+NRTEA+NVEK
Sbjct: 701 FYEGSLQNGVTAAERLRKDVDFPWPVPETPMMFWSNLGNEEISASGTSYLNRTEAANVEK 760
Query: 810 ITTRFIRCGMKPEQIGVITPYEGQRAFLVQHMQYQGSLPAKIYQEIEVASVDAFQGREKD 869
I TRF + G+KP IGVITPYEGQR+++V MQ G+ + Y+E+EVASVDAFQGREKD
Sbjct: 761 IVTRFFKAGVKPADIGVITPYEGQRSYIVNTMQNTGTFKKESYREVEVASVDAFQGREKD 820
Query: 870 LIIMSCVRSNDHQGIGFLNDPRRLNVALTRAKYGIIVIGNPKVLSKQPLWNNLLNFYKEQ 929
I++SCVRSN++QGIGFL+DPRRLNVALTRAKYG+++IGNPKVL K LW++LL +K++
Sbjct: 821 FIVLSCVRSNENQGIGFLSDPRRLNVALTRAKYGLVIIGNPKVLCKHELWHHLLVHFKDK 880
Query: 930 KVLVEGPLNNLKESLILFSKPKQYFK 955
K LVEGPL NL+ SL+ F +P+Q ++
Sbjct: 881 KCLVEGPLTNLQPSLLQFGRPRQAYR 906
>sp|Q09820|RENT1_SCHPO ATP-dependent helicase upf1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=upf1 PE=3 SV=2
Length = 925
Score = 993 bits (2566), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 489/899 (54%), Positives = 621/899 (69%), Gaps = 70/899 (7%)
Query: 68 SNLNLVSQKLHELQFEEEEDDGNEFFNKELPPHACKYCGIHDPAYVIMCNICKKWFCNGR 127
S+ N+ S+ E QFEE K+ C YC I +P ++ C C KWFCN R
Sbjct: 16 SSKNMTSENGLEHQFEEL------LVEKQYSEEHCAYCHIKNPNSILKCLHCNKWFCNVR 69
Query: 128 GHTSGSHIINHLVRAKHKEVTLHKDGPLGETVLECYTCGVRNIFVLGFIPAKADSVVVLL 187
G + SHII+HLVRA+HK+V LH L +TVLECY CG RN+F+LGFIPAKA +VVVLL
Sbjct: 70 GKSGASHIISHLVRARHKQVALHSHSSLSDTVLECYNCGTRNVFLLGFIPAKAKTVVVLL 129
Query: 188 CRTPCAAQNSLKDMNWDQEQWKPLIADRSFLSWLVKVPTEQEQQRGRQVTSAQIAKLEEV 247
CR PCA + KDMNWD QW+P+I+DR FL WL+ P+E+EQ+ +TS Q+ +LEE+
Sbjct: 130 CRQPCARASIAKDMNWDLTQWQPIISDRQFLPWLITPPSEEEQKLAIPITSQQMVRLEEL 189
Query: 248 WKDNAEATFQDLEKPGVDEDPHQVLLRYEDGYQYQNIFGPLVKLEADYDKRLKESQTQEN 307
W+ + A +DL DK + E + +
Sbjct: 190 WRKDPNANLEDL------------------------------------DKPI-EDDSLPS 212
Query: 308 VTVRWDVGLNKKSIAYFSLAKTDGDGYQYQNIFGPLVKLEADYDKRLKESQTQENVTVRW 367
V +R+ D + YQ + PL++ EADYDKRLKESQTQ++V VRW
Sbjct: 213 VELRYK------------------DAHAYQAVLSPLIQAEADYDKRLKESQTQKDVVVRW 254
Query: 368 DVGLNKKSIAYFSLAKTD-GDMRLMQGDELKLRYSYDASKTWSGLGHVIKIPDNFGDEVG 426
D +NK+ A+F L K + G++RL GDE+KL Y + WS G+VIKIP+N DEVG
Sbjct: 255 DQAINKRYTAWFLLPKLESGEIRLAIGDEMKLTYEGELRAPWSSTGYVIKIPNNVSDEVG 314
Query: 427 LELKSSAGAPTEATTGFSVDFIWKSTSFDRMQLALRKFAVDDQSVSAYIYHRLLGHNVDE 486
LELK S P E T FSVD++WKSTSFDRMQ ALR FA D +S+++YH+LLGH++
Sbjct: 315 LELKRSDKVPIECTHNFSVDYVWKSTSFDRMQTALRLFATDGSRLSSFLYHKLLGHDIPP 374
Query: 487 VLFRCHLPKHFSAPNLPDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLV-- 544
+ LP S PNLP LN SQ AV+ + +PLSLIQGPPGTGKTVTSA++VY L
Sbjct: 375 SFLKPKLPSDLSVPNLPKLNASQSEAVRAVLSKPLSLIQGPPGTGKTVTSASVVYHLATM 434
Query: 545 ----KQTGSPVLVCAPSNIAVDQLTEKIHRTGLKVVRVCAKSREAIDSPVSFLALHNQIR 600
+++ SPVLVCAPSN+AVDQL EKIHRTGL+VVRV AKSRE I+S VSFL+LH QI+
Sbjct: 435 QSRKRKSHSPVLVCAPSNVAVDQLAEKIHRTGLRVVRVAAKSREDIESSVSFLSLHEQIK 494
Query: 601 NMEMNSELKKLLQLKEETGELSSADEKRYRMLKKNAEKSLLDNADVICCTCVGAGDPRLL 660
N + N EL++LL+L+ E ELS DEK+ R+L AEK LL A VICCTCVGAGD R+
Sbjct: 495 NYKFNPELQRLLKLRSENNELSIQDEKKLRILVAAAEKELLRAAHVICCTCVGAGDRRIS 554
Query: 661 KIKFHSILIDESMQATEPECMVPVILGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFE 720
K KF S+LIDE+ QA+EPECM+P++LGAKQ++LVGDH QLGPVVM KK A A LSQSLFE
Sbjct: 555 KYKFRSVLIDEATQASEPECMIPLVLGAKQVVLVGDHQQLGPVVMNKKVALASLSQSLFE 614
Query: 721 RLVVLGIRPFRLEVQYRMHPELSKFPSNFFYEGSLQNGVCADERKLSKIDFPWPVPDKPM 780
RL++LG PFRL VQYRMHP LS+FPSN FYEG+LQNGV ER +DFPW PD P+
Sbjct: 615 RLIILGNSPFRLVVQYRMHPCLSEFPSNTFYEGTLQNGVTTSERIARHVDFPWIQPDSPL 674
Query: 781 LFYVTQGQEEIAGSGTSYVNRTEASNVEKITTRFIRCGMKPEQIGVITPYEGQRAFLVQH 840
+FY GQEE++ SGTS++NRTEAS EKI T F+R + PEQIG++TPY+GQR+++VQ+
Sbjct: 675 MFYANFGQEELSASGTSFLNRTEASTCEKIVTTFLRSNVLPEQIGIVTPYDGQRSYIVQY 734
Query: 841 MQYQGSLPAKIYQEIEVASVDAFQGREKDLIIMSCVRSNDHQGIGFLNDPRRLNVALTRA 900
MQ GS+ +Y+ +EVASVDAFQGREKD II+SCVRS++HQGIGF+NDPRRLNVALTRA
Sbjct: 735 MQNNGSMQKDLYKAVEVASVDAFQGREKDFIILSCVRSSEHQGIGFVNDPRRLNVALTRA 794
Query: 901 KYGIIVIGNPKVLSKQPLWNNLLNFYKEQKVLVEGPLNNLKESLILFSKPK--QYFKKN 957
KYG+IV+GNPKVL+K LW + + KE+ LVEG LN+L++ + + P+ Q FK++
Sbjct: 795 KYGVIVLGNPKVLAKHALWYHFVLHCKEKGYLVEGTLNSLQKFSLTLTPPQKPQKFKRD 853
>sp|O76512|RENT1_CAEEL Regulator of nonsense transcripts 1 OS=Caenorhabditis elegans
GN=smg-2 PE=1 SV=1
Length = 1069
Score = 953 bits (2464), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 476/964 (49%), Positives = 653/964 (67%), Gaps = 75/964 (7%)
Query: 2 SVDAYGPS-SQTLTFLDTEETDLIGGDTQGSEFDFTDFTLPSQSQTQASQLDSVNQIQVN 60
S D Y S +TLTF+D E+ + G+TQ S+F + F++P+QS +QA+ L +
Sbjct: 4 SDDEYSRSHGETLTFVDPEDDGVSIGNTQDSQFAYEQFSVPTQS-SQATDL-------LP 55
Query: 61 GKQNLDNSNLNLVSQKLHELQFEEEEDDGNEFFNKELPPHACKYCGIHDPAYVIMCNICK 120
G D + +L + + + + E+ E ++LP HAC+YCGI DP V C +C+
Sbjct: 56 G--GTDGTTNDLPFHDVEDDESDSEKSLTEEQHEQKLPEHACRYCGISDPLCVAKCTVCR 113
Query: 121 KWFCNGRGHTSGSHIINHLVRAKHKEVTLHKDGPLGETVLECYTCGVRNIFVLGFIPAKA 180
KWFCN TSG HI++H+VR++HKE HKD P G+T LECY CG +N+F LGFIP K
Sbjct: 114 KWFCNSNDGTSGGHIVHHMVRSQHKEAYTHKDSPCGDTQLECYRCGSKNVFNLGFIPGKK 173
Query: 181 DSVVVLLCRTPCAAQNSLKDMNWDQEQWKPLIADRSFLSWLVKVPTEQEQQRGRQVTSAQ 240
D VVV++CRTPCA+ D NW E WK +IA++ LSW+V VP+E++ R R++T+ Q
Sbjct: 174 DQVVVIICRTPCASIAFQNDDNWSPEDWKSVIAEKQLLSWIVNVPSEEQVARARKITATQ 233
Query: 241 IAKLEEVWKDNAEATFQDLEKPGVDEDPHQVLLRYEDGYQYQNIFGPLVKLEADYDKRLK 300
++EE+W+D+ EAT DL K P + E D+
Sbjct: 234 AVRMEELWRDHPEATVDDLNK-------------------------PGLDREPDH----- 263
Query: 301 ESQTQENVTVRWDVGLNKKSIAYFSLAKTDGDGYQYQNIFGPLVKLEADYDKRLKESQTQ 360
V +R+ D + Y +F PLV +EA+YD+R+KES +Q
Sbjct: 264 -------VQLRY------------------VDAHHYSKVFRPLVAIEAEYDRRVKESASQ 298
Query: 361 ENVTVRWDVGLNKKSIAYFSLAK-TDGDMRLMQGDELKLRYS--YDASKTWSGLGHVIKI 417
TVRW+ GL + +A+F L + DG M+L +GDEL+L++S D S+ W+ +G V KI
Sbjct: 299 AVGTVRWEQGLRQSVLAFFHLPQFADGVMKLAKGDELRLKHSQTVDGSE-WTKIGSVFKI 357
Query: 418 PDNFGDEVGLELKSSAGAPT-EATTGFSVDFIWKSTSFDRMQLALRKFAVDDQSVSAYIY 476
PDN GDEVG+E++ + E+ F+VD +W +T+F+R AL D +++S Y+Y
Sbjct: 358 PDNHGDEVGIEIRGAVDKSVMESRIMFTVDVVWNATTFERQYKALAALLNDSKAISPYLY 417
Query: 477 HRLLGHNVDEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTS 536
+LLGH +E++ + LP+ S LP+LN SQ+ AVK + RPLSLIQGPPGTGKTV S
Sbjct: 418 QKLLGHPAEEMMLKFDLPRRLSVAGLPELNSSQMQAVKQVLTRPLSLIQGPPGTGKTVVS 477
Query: 537 ATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRTGLKVVRVCAKSREAIDSPVSFLALH 596
ATIVY LV++T VLVC+PSNIAVD L EKIH+TGLKVVR+CA+SRE ++ V +L L
Sbjct: 478 ATIVYHLVQKTEGNVLVCSPSNIAVDHLAEKIHKTGLKVVRLCARSREHSETTVPYLTLQ 537
Query: 597 NQIRNMEMNSELKKLLQLKEETGELSSADEKRYRMLKKNAEKSLLDNADVICCTCVGAGD 656
+Q++ M +EL+KL+QLK+E GEL D+ RY LK+ E LL ADVICCTC A D
Sbjct: 538 HQLKVMG-GAELQKLIQLKDEAGELEFKDDLRYMQLKRVKEHELLAAADVICCTCSSAAD 596
Query: 657 PRLLKIKFHSILIDESMQATEPECMVPVILGAKQLILVGDHCQLGPVVMCKKAARAGLSQ 716
RL KI+ ++LIDES QATEPE +V ++ G +QL+LVGDHCQLGPVV+CKKAA AGLSQ
Sbjct: 597 ARLSKIRTRTVLIDESTQATEPEILVSIMRGVRQLVLVGDHCQLGPVVICKKAAIAGLSQ 656
Query: 717 SLFERLVVLGIRPFRLEVQYRMHPELSKFPSNFFYEGSLQNGVCADERKLSKIDFPWPVP 776
SLFERLV+LGIRPFRL+VQYRMHP LS+FPSN FY+GSLQNGV ++R ++ +D+ WP P
Sbjct: 657 SLFERLVLLGIRPFRLQVQYRMHPVLSEFPSNVFYDGSLQNGVTENDRHMTGVDWHWPKP 716
Query: 777 DKPMLFYVTQGQEEIAGSGTSYVNRTEASNVEKITTRFIRCGMKPEQIGVITPYEGQRAF 836
+KP F+ G EE++ SGTS++NRTEA+NVEK+ ++ I+ G++P QIGVIT YEGQR+F
Sbjct: 717 NKPAFFWHCSGSEELSASGTSFLNRTEAANVEKLVSKLIKAGVQPHQIGVITSYEGQRSF 776
Query: 837 LVQHMQYQGSLPAKIYQEIEVASVDAFQGREKDLIIMSCVRSNDHQGIGFLNDPRRLNVA 896
+V +M QG+L +K+Y+ +E+ASVDAFQGREKD II++CVRSND GIGFL+DPRRLNVA
Sbjct: 777 IVNYMHTQGTLNSKLYENVEIASVDAFQGREKDYIIVTCVRSNDILGIGFLSDPRRLNVA 836
Query: 897 LTRAKYGIIVIGNPKVLSKQPLWNNLLNFYKEQKVLVEGPLNNLKESLILFSKPKQYFK- 955
+TRAKYG++++GN KVL++ LW+ L+N YK +++L EGP+N LK + + PK +
Sbjct: 837 ITRAKYGLVLVGNAKVLARHDLWHELINHYKSKEMLYEGPINALKP--LNLALPKATIRT 894
Query: 956 KNNM 959
KNN+
Sbjct: 895 KNNI 898
>sp|P30771|NAM7_YEAST ATP-dependent helicase NAM7 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=NAM7 PE=1 SV=1
Length = 971
Score = 924 bits (2388), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 453/872 (51%), Positives = 594/872 (68%), Gaps = 62/872 (7%)
Query: 82 FEEEEDDGNEFFNKELPPHACKYCGIHDPAYVIMCNICKKWFCNGRGHTSGSHIINHLVR 141
FEE + F + ++C YCGI VI CN CKKWFCN + TS SHI+NHLV
Sbjct: 42 FEEAQVTETGFRSPSASDNSCAYCGIDSAKCVIKCNSCKKWFCNTKNGTSSSHIVNHLVL 101
Query: 142 AKHKEVTLHKDGPLGETVLECYTCGVRNIFVLGFIPAKADSVVVLLCRTPCAAQNSLKDM 201
+ H V+LH D LG+TVLECY CG +N+F+LGF+ AK+++VVVLLCR PCA K+
Sbjct: 102 SHHNVVSLHPDSDLGDTVLECYNCGRKNVFLLGFVSAKSEAVVVLLCRIPCA---QTKNA 158
Query: 202 NWDQEQWKPLIADRSFLSWLVKVPTEQEQQRGRQVTSAQIAKLEEVWKDNAEATFQDLEK 261
NWD +QW+PLI DR LSW+ + PTE+E+ + R +T +QI+KLE W+ N +AT D++
Sbjct: 159 NWDTDQWQPLIEDRQLLSWVAEQPTEEEKLKARLITPSQISKLEAKWRSNKDATINDIDA 218
Query: 262 PGVDEDPHQVLLRYEDGYQYQNIFGPLVKLEADYDKRLKESQTQENVTVRWDVGLNKKSI 321
P E +LLR YQ
Sbjct: 219 PEEQEAIPPLLLR------YQ--------------------------------------- 233
Query: 322 AYFSLAKTDGDGYQYQNIFGPLVKLEADYDKRLKESQTQENVTVRWDVGLNKKSIAYFSL 381
D Y+YQ +GPL+KLEADYDK+LKESQ E+++V W + LN + +A F+L
Sbjct: 234 ----------DAYEYQRSYGPLIKLEADYDKQLKESQALEHISVSWSLALNNRHLASFTL 283
Query: 382 AKTDG-DMRLMQGDELKLRYSYDASKTWSGLGHVIKIPDNFGDEVGLELK-SSAGAPTEA 439
+ + ++++ GDE+ L YS W G G+++++P++F D LELK S PT
Sbjct: 284 STFESNELKVAIGDEMILWYSGMQHPDWEGRGYIVRLPNSFQDTFTLELKPSKTPPPTHL 343
Query: 440 TTGFSVDFIWKSTSFDRMQLALRKFAVDDQSVSAYIYHRLLGHNVDEVLFRCHLPKHFSA 499
TTGF+ +FIWK TS+DRMQ AL+KFA+D +S+S Y+Y+++LGH V ++ F LPK FS
Sbjct: 344 TTGFTAEFIWKGTSYDRMQDALKKFAIDKKSISGYLYYKILGHQVVDISFDVPLPKEFSI 403
Query: 500 PNLPDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNI 559
PN LN SQ AV H +QRPLSLIQGPPGTGKTVTSATIVY L K +LVCAPSN+
Sbjct: 404 PNFAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNV 463
Query: 560 AVDQLTEKIHRTGLKVVRVCAKSREAIDSPVSFLALHNQIRNMEMNSELKKLLQLKEETG 619
AVD L K+ GLKVVR+ AKSRE ++S VS LALHN + ELK LL+LK+E G
Sbjct: 464 AVDHLAAKLRDLGLKVVRLTAKSREDVESSVSNLALHNLV-GRGAKGELKNLLKLKDEVG 522
Query: 620 ELSSADEKRYRMLKKNAEKSLLDNADVICCTCVGAGDPRLLKIKFHSILIDESMQATEPE 679
ELS++D KR+ L + E +L+ ADV+CCTCVGAGD RL KF ++LIDES QA+EPE
Sbjct: 523 ELSASDTKRFVKLVRKTEAEILNKADVVCCTCVGAGDKRL-DTKFRTVLIDESTQASEPE 581
Query: 680 CMVPVILGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVLGIRPFRLEVQYRMH 739
C++P++ GAKQ+ILVGDH QLGPV++ +KAA AGL QSLFERL+ LG P RLEVQYRM+
Sbjct: 582 CLIPIVKGAKQVILVGDHQQLGPVILERKAADAGLKQSLFERLISLGHVPIRLEVQYRMN 641
Query: 740 PELSKFPSNFFYEGSLQNGVCADERKLSKIDFPWPVPDKPMLFYVTQGQEEIAGSGTSYV 799
P LS+FPSN FYEGSLQNGV ++R + FPWP+ PM+F+ G+EEI+ +GTS++
Sbjct: 642 PYLSEFPSNMFYEGSLQNGVTIEQRTVPNSKFPWPIRGIPMMFWANYGREEISANGTSFL 701
Query: 800 NRTEASNVEKITTRFIRCGMKPEQIGVITPYEGQRAFLVQHMQYQGSLPAKIYQEIEVAS 859
NR EA N E+I T+ R G+KPEQIGVITPYEGQRA+++Q+MQ GSL +Y ++EVAS
Sbjct: 702 NRIEAMNCERIITKLFRDGVKPEQIGVITPYEGQRAYILQYMQMNGSLDKDLYIKVEVAS 761
Query: 860 VDAFQGREKDLIIMSCVRSNDHQGIGFLNDPRRLNVALTRAKYGIIVIGNPKVLSKQPLW 919
VDAFQGREKD II+SCVR+N+ Q IGFL DPRRLNV LTRAKYG++++GNP+ L++ LW
Sbjct: 762 VDAFQGREKDYIILSCVRANEQQAIGFLRDPRRLNVGLTRAKYGLVILGNPRSLARNTLW 821
Query: 920 NNLLNFYKEQKVLVEGPLNNLKESLILFSKPK 951
N+LL ++E+ LVEG L+NL+ + +P+
Sbjct: 822 NHLLIHFREKGCLVEGTLDNLQLCTVQLVRPQ 853
>sp|Q54I89|RENT1_DICDI Regulator of nonsense transcripts 1 OS=Dictyostelium discoideum
GN=upf1 PE=3 SV=1
Length = 1331
Score = 863 bits (2231), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/910 (48%), Positives = 595/910 (65%), Gaps = 78/910 (8%)
Query: 63 QNLDNSNLNLVSQKLH--ELQFEEEEDDGNEFFNKELPPHACKYCGIHDPAYVIMC--NI 118
QN+ NS + L+ LH +L FEE +++ ELP HAC YC H+ + V+ C
Sbjct: 150 QNI-NSQIGLMDPHLHSSQLNFEEPQEE------IELPAHACAYCATHELSTVVKCMHPS 202
Query: 119 CKKWFCNGRGHTSGSHIINHLVRAKHKEVTLHKDGPLGETVLECYTCGVRNIFVLGFIPA 178
C KWFCNG+G T SHII HLV++KHKEV LH + G+T LEC+ CG +NIF+LGFI A
Sbjct: 203 CGKWFCNGKGKTKSSHIITHLVKSKHKEVALHPESSFGDTTLECFNCGCKNIFLLGFITA 262
Query: 179 KADSVVVLLCRTPCAAQNSLKDMNWDQEQWKPLI--ADRSFLSWLVKVPTEQEQQRGRQV 236
+ +SVVVLLCR PCA+ S K++NWD W+PLI +++F SWLVK P++ + +R RQ+
Sbjct: 263 RTESVVVLLCRDPCASGPS-KEVNWDMSSWQPLINGGEKAFCSWLVKTPSQVDSERSRQI 321
Query: 237 TSAQIAKLEEVWKDNAEATFQDLEKPGVDEDPHQVLLRYEDGYQYQNIFGPLVKLEADYD 296
T QI +LEE WK + EAT D+E P D++
Sbjct: 322 TIQQILRLEEFWKMDPEATLLDIEAPRSDDE----------------------------- 352
Query: 297 KRLKESQTQENVTVRWDVGLNKKSIAYFSLAKTDGDGYQYQNIFGPLVKLEADYDKRLKE 356
K + TQ +AY D Y+Y+ I PL++LEA ++K L+E
Sbjct: 353 ---KPASTQ---------------LAY-------KDAYEYREIISPLIELEAKHEKELRE 387
Query: 357 SQTQENVTVRWDVGLNKKSIAYFSLAKTDGDMRLMQGDELKLRY--SYDASKTWSGLGHV 414
S +Q +++ W G+NK+ A F +++D + +++ GDELKL++ S W G V
Sbjct: 388 SLSQSGISIEWSQGINKRYTATFPFSRSDLEFKVVPGDELKLQFISSTGGVIEWEDTGRV 447
Query: 415 IKIPDNFGDEVGLELKSSAGAPTEATTGFSVDFIWKSTSFDRMQLALRKFAVDDQSVSAY 474
I I D + + LE KS + + ++ +W+STS +R+ A++ FA+ +Q++S+Y
Sbjct: 448 IHIDDE--NLLSLETKSRCSFDSGPKGSYRMEMVWRSTSSERILSAMKSFAIKEQALSSY 505
Query: 475 IYHRLLGH-NVDEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHAIQRPLSLIQGPPGTGKT 533
+YH LLGH ++ LP +F NLP LN SQ+ AV + PLSLIQGPPGTGKT
Sbjct: 506 LYHALLGHPDIPPAPLDIQLPTNFHLKNLPRLNESQISAVNKVLTAPLSLIQGPPGTGKT 565
Query: 534 VTSATIVYQLVK--QTGSPVLVCAPSNIAVDQLTEKIHRTGLKVVRVCAKSREAIDSPVS 591
V S+ I++ LVK + VLVC PSN+A+DQLT K+H GLKVVR+ +K RE + SPV
Sbjct: 566 VISSFIIHHLVKYVKGNDKVLVCTPSNVAIDQLTGKLHEIGLKVVRLSSKLREEVASPVE 625
Query: 592 FLALHNQIRNMEM--NSELKKLLQLKEETGELSSADEKRYRMLKKNAEKSLLDNADVICC 649
L LH Q+ ++ + EL KL +LKE G LS+ DEKRY L++ E ++L ADVIC
Sbjct: 626 HLTLHKQVYKLDQMGDGELGKLRKLKEAFGSLSNEDEKRYIYLRRMMEMAILRKADVICA 685
Query: 650 TCVGAGDPRLLKIKFHSILIDESMQATEPECMVPVILGAKQLILVGDHCQLGPVVMCKKA 709
TCVGAGDPRL + +F ILIDES QA+EPEC++P+++GAKQ+ILVGDH QLGPV++CKK
Sbjct: 686 TCVGAGDPRLSQFRFPHILIDESTQASEPECLIPLMMGAKQVILVGDHRQLGPVLLCKKV 745
Query: 710 ARAGLSQSLFERLVVLGIRPFRLEVQYRMHPELSKFPSNFFYEGSLQNGVCADERKLSKI 769
AGLSQSLFERL+ LG P RL +QYRMHP L++FPSN YEG L + + +R S+
Sbjct: 746 VDAGLSQSLFERLISLGHHPERLTIQYRMHPSLTEFPSNTSYEGQLVSELSHTDRD-SQS 804
Query: 770 DFPWPVPDKPMLFYVTQGQEEIAGSGTSYVNRTEASNVEKITTRFIRCGMKPEQIGVITP 829
FPWP P PM F+ G EEI+ SGTS++N TEAS EKI T+F+ G P QIG+ITP
Sbjct: 805 KFPWPQPKDPMFFFNCTGSEEISSSGTSFINTTEASICEKIVTKFLELGSLPGQIGIITP 864
Query: 830 YEGQRAFLVQHMQYQGSLPAKIYQEIEVASVDAFQGREKDLIIMSCVRSNDHQGIGFLND 889
YEGQRA++ HMQ G L ++Y+ IEVASVD+FQGREKD II+SCVRSND+QGIGFL D
Sbjct: 865 YEGQRAYITSHMQKSGKLNLELYKSIEVASVDSFQGREKDYIILSCVRSNDYQGIGFLQD 924
Query: 890 PRRLNVALTRAKYGIIVIGNPKVLSKQPLWNNLLNFYKEQKVLVEGPLNNLKESLILFSK 949
PRRLNVALTRA++G+I++GN KVLSK PLWN+L++ +K + VLVEG L NLK+S ++ K
Sbjct: 925 PRRLNVALTRARFGLIILGNAKVLSKDPLWNSLISHFKNKNVLVEGSLANLKQSPVILQK 984
Query: 950 PKQYFKKNNM 959
PK+ + + +
Sbjct: 985 PKKLYGQGKL 994
>sp|P32644|ECM32_YEAST Putative ATP-dependent RNA helicase ECM32 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ECM32 PE=1 SV=1
Length = 1121
Score = 240 bits (613), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 181/510 (35%), Positives = 267/510 (52%), Gaps = 78/510 (15%)
Query: 479 LLGHN-VDEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSA 537
LLG + E+ F L FS+ LNRSQ AV+H + ++++QGPPGTGKT T
Sbjct: 627 LLGQKPIKEIYFDNRL--KFSSD---KLNRSQKTAVEHVLNNSITILQGPPGTGKTSTIE 681
Query: 538 TIVYQLVKQTGS-PVLVCAPSNIAVDQLTEKI--HRTGLKVVRVCAKSRE---AIDSPVS 591
I+ Q++++ + P+L A SNIA+D + EKI +R +K++R+ +K +E + D P+
Sbjct: 682 EIIIQVIERFHAFPILCVAASNIAIDNIAEKIMENRPQIKILRILSKKKEQQYSDDHPLG 741
Query: 592 FLALHNQI-RNMEMNSELKKLLQLKEETGEL-SSADEKRYRMLKKNAEKSLLDNADVICC 649
+ LHN + +N+ S +++ K GE+ S +++ ++ K ++ + +I
Sbjct: 742 EICLHNIVYKNL---SPDMQVVANKTRRGEMISKSEDTKFYKEKNRVTNKVVSQSQIIFT 798
Query: 650 TCVGAGDPRLLKIKFHSILI-DESMQATEPECMVPVIL-GAKQLILVGDHCQLGPVVMCK 707
T + AG L IK ++I DE+ Q++E +VP+ L G + + VGD QL
Sbjct: 799 TNIAAGGRELKVIKECPVVIMDEATQSSEASTLVPLSLPGIRNFVFVGDEKQLSSFSNIP 858
Query: 708 KAARAGLSQSLFERLVVLGI--RPFRLEVQYRMHPELSKFPSNFFYEGSLQNGVCADERK 765
+ L SLFER++ G P L+ QYRMHP++S+FP Y G L++GV DE+K
Sbjct: 859 Q-----LETSLFERVLSNGTYKNPLMLDTQYRMHPKISEFPIKKIYNGELKDGV-TDEQK 912
Query: 766 LSKIDFPWPVPDKPMLFY---------VTQGQEEIAGSGTSYVNRTEASNVEKITTRFIR 816
WP P+ FY V Q +I G +Y N+ E + KI +
Sbjct: 913 ------AWPGVQHPLFFYQCDLGPESRVRSTQRDIV--GFTYENKHECVEIVKIIQILML 964
Query: 817 CGMKP-EQIGVITPYEGQRAFLVQHMQYQGSL-PAKI-----YQEIE------------- 856
P E+IGVITPY QR L + + P +I Y EIE
Sbjct: 965 DKKVPLEEIGVITPYSAQRDLLSDILTKNVVINPKQISMQQEYDEIELFNAAGSQGTAGS 1024
Query: 857 -------------VASVDAFQGREKDLIIMSCVRSNDHQGIGFLNDPRRLNVALTRAKYG 903
VA+VD+FQG EK II SCVR+N IGFL D RRLNVALTRAK+G
Sbjct: 1025 LQNNVINIINGLHVATVDSFQGHEKSFIIFSCVRNNTENKIGFLRDKRRLNVALTRAKHG 1084
Query: 904 IIVIGNPKVLSK-QPLWNNLLNFYKEQKVL 932
+IV+GN VL K PLW + + + +EQ+V+
Sbjct: 1085 LIVVGNKNVLRKGDPLWKDYITYLEEQEVI 1114
>sp|O94247|HCS1_SCHPO DNA polymerase alpha-associated DNA helicase A
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=hcs1 PE=3 SV=1
Length = 660
Score = 225 bits (573), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 181/578 (31%), Positives = 289/578 (50%), Gaps = 56/578 (9%)
Query: 393 GDELKLRYSYDASKT-------WSGLGHVIKIPDNFGDEVGLELKSSAGAPTEATTGFSV 445
GD + +R + +SK S G V ++ + + + LKS P+ + T SV
Sbjct: 96 GDVVSIRQDFQSSKKKRPNETDISVEGVVTRVHER---HISVALKSEEDIPS-SVTRLSV 151
Query: 446 DFIWKSTSFDRMQLALRKFAVDDQSVSAYIYHRLLGHNVDEVLFRCHLPKHFSAPNLPDL 505
+ +++RM+ + +F +++ L+G +V L N +L
Sbjct: 152 VKLVNRVTYERMRHTMLEFKRSIPEYRNSLFYTLIGRKKADVSIDQKLIGDIKYFN-KEL 210
Query: 506 NRSQVYAVKHAIQ-RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQL 564
N SQ AVK +I + LSLI GPPGTGKT T I+ QLV + +LVC SN+AVD +
Sbjct: 211 NASQKKAVKFSIAVKELSLIHGPPGTGKTHTLVEIIQQLVLRNKR-ILVCGASNLAVDNI 269
Query: 565 TEKIHRTGLKVVRVCAKSR---EAIDSPVSFLALHNQ----IRNMEMNSELKKLLQLKEE 617
+++ +G+ +VR+ +R +D + L+ IR + + ++ K +
Sbjct: 270 VDRLSSSGIPMVRLGHPARLLPSILDHSLDVLSRTGDNGDVIRGISEDIDVCLSKITKTK 329
Query: 618 TGELSSADEKRYRMLKKNAEK-------SLLDNADVICCTCVGAGDPRLLKIKFHSILID 670
G K R L+K+ K +++ + V+ CT GAG +L +F +++ID
Sbjct: 330 NGRERREIYKNIRELRKDYRKYEAKTVANIVSASKVVFCTLHGAGSRQLKGQRFDAVIID 389
Query: 671 ESMQATEPECMVPVILGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVLG---I 727
E+ QA EP+C +P +LG ++IL GDH QL P V K+ S+FERLV +
Sbjct: 390 EASQALEPQCWIP-LLGMNKVILAGDHMQLSPNVQSKRPY-----ISMFERLVKSQGDLV 443
Query: 728 RPFRLEVQYRMHPELSKFPSNFFYEGSLQNGVCADERKLSKIDF--PWPVPDKPMLFYVT 785
+ F L +QYRMH +SKFPS+ FY+ L +R L ++ + D P+ FY T
Sbjct: 444 KCF-LNIQYRMHELISKFPSDTFYDSKLVPAEEVKKRLLMDLENVEETELTDSPIYFYDT 502
Query: 786 QG--QEEIAGSGT------SYVNRTEASNVEKITTRFIRCGMKPEQIGVITPYEGQRAFL 837
G QE+ S N EA V + + G++ + I V+TPY Q A +
Sbjct: 503 LGNYQEDDRSEDMQNFYQDSKSNHWEAQIVSYHISGLLEAGLEAKDIAVVTPYNAQVALI 562
Query: 838 VQHMQYQGSLPAKIYQEIEVASVDAFQGREKDLIIMSCVRSNDHQGIGFLNDPRRLNVAL 897
Q ++ +G E+E+ SVD QGREK+ II S VRSND + +GFL + RRLNVA+
Sbjct: 563 RQLLKEKGI-------EVEMGSVDKVQGREKEAIIFSLVRSNDVREVGFLAEKRRLNVAI 615
Query: 898 TRAKYGIIVIGNPKVLS-KQPLWNNLLNFYKEQKVLVE 934
TR K + VIG+ + ++ ++F +E ++++
Sbjct: 616 TRPKRHLCVIGDSNTVKWASEFFHQWVDFLEENAIVMD 653
>sp|O94387|YGSA_SCHPO Uncharacterized ATP-dependent helicase C29A10.10c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC29A10.10c PE=3 SV=1
Length = 1944
Score = 224 bits (571), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 185/589 (31%), Positives = 284/589 (48%), Gaps = 131/589 (22%)
Query: 460 ALRKFAVDDQSVSAYIYHRLLGHNVDEVLFRCHLPKHFSAPNLPDL------NRSQVYAV 513
+LR+FA + R+L NV LP +F+ + N Q YA+
Sbjct: 1226 SLREFAALKSLRHLPLSQRILDANV------TRLPSNFTDDKKQKIMKSYGVNEPQAYAI 1279
Query: 514 -KHAIQRPLSLIQGPPGTGKT----------VTSAT------IVYQLVKQTGSPVLVCAP 556
++ +LIQGPPGTGKT +TS++ + Q K + + +L+CAP
Sbjct: 1280 YASSVNDGFTLIQGPPGTGKTKTILGMIGAVLTSSSQGLQFNVPGQTRKTSKNKILICAP 1339
Query: 557 SNIAVDQLTEKIHRTGL----------KVVRVC--------AKSREAIDSPVSFLALHNQ 598
SN A+D++ +I + G+ KV+RV AK + + + L N
Sbjct: 1340 SNAAIDEILLRI-KAGVYDHEGIKFFPKVIRVGFGDSISVHAKEFTLEEQMIKQMELTNL 1398
Query: 599 IRNMEMN----------SELKKLLQLKEE------TGELSSADEKRYR------------ 630
++ E N S +KK L+E+ TG+ SS E + R
Sbjct: 1399 KKDQEANNSSDTRKKYDSIIKKRDSLREDLEKFRSTGKNSSILEAQLREITKQKNMLEQS 1458
Query: 631 ----------------MLKKNAEKSLLDNADVICCTCVGAGDPRLLK--IKFHSILIDES 672
+LKK + LL AD++C T +G LL + F +++IDE+
Sbjct: 1459 LDDMRERQRSTNRNLDVLKKQIQNQLLQEADIVCATLSASGHELLLNAGLTFRTVIIDEA 1518
Query: 673 MQATEPECMVPVILGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVLGIRPFR- 731
QA E ++P+ G + ++VGD QL P V+ K +A+ G SQSL+ +R F+
Sbjct: 1519 AQAVELSSIIPLKYGCESCVMVGDPNQLPPTVLSKTSAKFGYSQSLY-------VRMFKQ 1571
Query: 732 -------LEVQYRMHPELSKFPSNFFYEGSLQNGVCADERKLSKI-DFPWPVPDKPML-- 781
L +QYRM+PE+S+FPS FFY L +G +S + PW + P L
Sbjct: 1572 HNESACLLSIQYRMNPEISRFPSKFFYNSKLLDG-----PNMSAVTSRPW--HEDPQLGI 1624
Query: 782 --FYVTQGQEEIAGSGTSYVNRTEASNVEKITTRFIRCGMKPE---QIGVITPYEGQRAF 836
F+ G E + S + Y N EAS + + R I+C + + +IGV+TPY Q
Sbjct: 1625 YRFFNVHGTEAFSNSKSLY-NVEEASFILLLYERLIQCYLNIDFEGKIGVVTPYRSQ--- 1680
Query: 837 LVQHM--QYQGSLPAKIYQEIEVASVDAFQGREKDLIIMSCVRSNDHQGIGFLNDPRRLN 894
VQ + Q+Q + I++ +++ +VD FQG+EKD+II SCVRS+ GIGFL D RRLN
Sbjct: 1681 -VQQLRSQFQRKYGSIIFKHLDIHTVDGFQGQEKDIIIFSCVRSSMSGGIGFLQDLRRLN 1739
Query: 895 VALTRAKYGIIVIGNPKVLSKQPLWNNLLNFYKEQKVLVEGPLNNLKES 943
VALTRAK + ++GN K L ++ ++ +L+ K + V + N K S
Sbjct: 1740 VALTRAKSSLYIVGNSKPLMQEDIFYSLIEDAKTRGVWRDLSANQFKNS 1788
>sp|P34243|HCS1_YEAST DNA polymerase alpha-associated DNA helicase A OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HCS1 PE=1
SV=1
Length = 683
Score = 214 bits (546), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 175/566 (30%), Positives = 284/566 (50%), Gaps = 89/566 (15%)
Query: 412 GHVIKIPDNFGDEVGLELKSSAGAPTEATTGFSVDFIWKST---SFDRMQLALRKFAVDD 468
G V K+ D ++ + L+ S +S +I K+T +++RM+ +RK +
Sbjct: 117 GVVYKMSDT---QITIALEESQDVIATTFYSYSKLYILKTTNVVTYNRMESTMRKLS--- 170
Query: 469 QSVSAYIYHRLLGHNVDEVLFRCHLPKHFSAPNL-----PDLNRSQVYAVKHAIQRPLSL 523
+S+ I +++ + V+E R +P S N+ P+LN SQ A+ AI L++
Sbjct: 171 -EISSPIQDKIIQYLVNE---RPFIPNTNSFQNIKSFLNPNLNDSQKTAINFAINNDLTI 226
Query: 524 IQGPPGTGKTVTSATIVYQL-VKQTGSPVLVCAPSNIAVDQLTEKIH---------RTGL 573
I GPPGTGKT T ++ QL +K +L+C PSNI+VD + E++ R G
Sbjct: 227 IHGPPGTGKTFTLIELIQQLLIKNPEERILICGPSNISVDTILERLTPLVPNNLLLRIGH 286
Query: 574 KVVRVCAKSREAIDSPVSFLALHNQIRNMEMNSELKKLLQLKEETGELSSADEKR----- 628
+ + R ++D L+ N I +++ E+ KL+Q E +L + +++
Sbjct: 287 PARLLDSNKRHSLD----ILSKKNTIVK-DISQEIDKLIQ---ENKKLKNYKQRKENWNE 338
Query: 629 YRMLKKNAEK-------SLLDNADVICCTCVGAGDPRLLKIK--------FHSILIDESM 673
++L+K+ +K L+ + ++ T G+ L + F +++IDE
Sbjct: 339 IKLLRKDLKKREFKTIKDLIIQSRIVVTTLHGSSSRELCSLYRDDPNFQLFDTLIIDEVS 398
Query: 674 QATEPECMVPVILGAKQ---LILVGDHCQLGPVVMCK--KAARAGLSQSLFERLVVLGIR 728
QA EP+C +P+I Q L+L GD+ QL P + + K L +LF+R++ I
Sbjct: 399 QAMEPQCWIPLIAHQNQFHKLVLAGDNKQLPPTIKTEDDKNVIHNLETTLFDRII--KIF 456
Query: 729 PFR-----LEVQYRMHPELSKFPSNFFYEGSLQNGVCADERKLSKIDFPW----PVPDK- 778
P R L VQYRM+ ++ +FPS+ Y G L R L ID P P D
Sbjct: 457 PKRDMVKFLNVQYRMNQKIMEFPSHSMYNGKLLADATVANRLL--IDLPTVDATPSEDDD 514
Query: 779 ----PMLFYVTQGQE--EIAGSGT---SYVNRTEASNVEKITTRFIRCGMKPEQIGVITP 829
P+++Y TQG E E A T S N E + V++ + IGVI+P
Sbjct: 515 DTKIPLIWYDTQGDEFQETADEATILGSKYNEGEIAIVKEHIENLRSFNVPENSIGVISP 574
Query: 830 YEGQRAFLVQHMQYQGSLPAKIYQEIEVASVDAFQGREKDLIIMSCVRSNDHQGIGFLND 889
Y Q + L + + + L +IE+++VD FQGREKD+II+S VRSN+ +GFL +
Sbjct: 575 YNAQVSHLKKLIHDELKL-----TDIEISTVDGFQGREKDVIILSLVRSNEKFEVGFLKE 629
Query: 890 PRRLNVALTRAKYGIIVIGNPKVLSK 915
RRLNVA+TR + ++V+GN +VL +
Sbjct: 630 ERRLNVAMTRPRRQLVVVGNIEVLQR 655
>sp|Q92355|SEN1_SCHPO Helicase sen1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=sen1 PE=1 SV=1
Length = 1687
Score = 214 bits (545), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 179/550 (32%), Positives = 262/550 (47%), Gaps = 113/550 (20%)
Query: 505 LNRSQVYAVKHAI-QRPLSLIQGPPGTGKTVTSATIVYQLV---------------KQTG 548
+N Q A+ A+ +LIQGPPGTGKT T I+ L+ K T
Sbjct: 1130 VNEPQAKAIMCALDNNGFTLIQGPPGTGKTKTIIGIISALLVDLSRYHITRPNQQSKSTE 1189
Query: 549 SP--VLVCAPSNIAVDQLTEKIHRTGL---------KVVRVCAKSREAIDSPVSFLALHN 597
S +L+CAPSN AVD++ ++ R L +VVR+ + E I+ V L+L
Sbjct: 1190 SKQQILLCAPSNAAVDEVLLRLKRGFLLENGEKYIPRVVRI--GNPETINVSVRDLSLEY 1247
Query: 598 QIRN--MEMN-------------------------------------------SELKKLL 612
Q +E+N L K L
Sbjct: 1248 QTEKQLLEVNQGAIDLGSLQELTRWRDTFYDCIQKIEELEKQIDVARDVAEDTKSLGKEL 1307
Query: 613 QLK-----------EETGELSSADEKRYRMLKKNAEKSLLDNADVICCTCVGAGDPRLL- 660
Q K EE S K +L+K A+K++L ADV+C T G+G +
Sbjct: 1308 QNKINEKNLAEQKVEELQSQSFTKNKEVDLLRKKAQKAILKQADVVCATLSGSGHDLVAH 1367
Query: 661 -KIKFHSILIDESMQATEPECMVPVILGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLF 719
+ F +++IDE+ QA E + ++P+ GAK+ ILVGD QL P V+ KKAA SQSLF
Sbjct: 1368 SSLNFSTVIIDEAAQAVELDTIIPLRYGAKKCILVGDPNQLPPTVLSKKAASLNYSQSLF 1427
Query: 720 ERLVV-LGIRPFRLEVQYRMHPELSKFPSNFFYEGSLQNGVCADERKLSKIDFPWPVPDK 778
R+ + L +QYRMHP++S FPS FY+ L++G + K W V K
Sbjct: 1428 VRIQKNFSNQMCLLSIQYRMHPDISHFPSKKFYDSRLEDG----DNMAEKTQQVWHVNPK 1483
Query: 779 PMLF--YVTQGQEEIAGSGTSYVNRTEA----SNVEKITTRFIRCGMKPEQIGVITPYEG 832
+ + +G+E + + ++Y N E + V+++ +F +IGVITPY
Sbjct: 1484 FTQYRLFDVRGKERTSNTMSTY-NLEEVEYLVNMVDELLNKFPDVNFTG-RIGVITPYRS 1541
Query: 833 Q-----RAFLVQHMQYQGSLPAKIYQEIEVASVDAFQGREKDLIIMSCVRSNDHQGIGFL 887
Q RAF V++ + I++ +VD FQG+EKD+I SCV+S GIGFL
Sbjct: 1542 QLHELRRAFKVKYGK-------SFMSTIDIQTVDGFQGQEKDIIFFSCVKSYSKHGIGFL 1594
Query: 888 NDPRRLNVALTRAKYGIIVIGNPKVLSKQPLWNNLLNFYKEQKVLVEGPLNNLKESLILF 947
D RRLNVALTRA+ +++IGN + L LW +L++ +K LVE P + + LI
Sbjct: 1595 RDFRRLNVALTRARSSLLIIGNMETLKTDDLWGSLVDDALSRK-LVESPHIDSEGRLITI 1653
Query: 948 SKPKQYFKKN 957
S+ + KN
Sbjct: 1654 SRTSEKRMKN 1663
>sp|Q57568|Y104_METJA Uncharacterized ATP-dependent helicase MJ0104 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0104 PE=3 SV=1
Length = 663
Score = 208 bits (530), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 179/553 (32%), Positives = 266/553 (48%), Gaps = 104/553 (18%)
Query: 445 VDFIWKSTSFDRMQLALRKFAVDDQSVSAYIYHRLLGHNVDEVLFRCHLPKHFSAPNLPD 504
VD +F RM+ ALR+FA + AYI +LG E R + F NL
Sbjct: 132 VDLYVNDITFKRMKEALREFARKRDKL-AYI---ILGIEHPEKPLREDIKLEFYDKNL-- 185
Query: 505 LNRSQVYAVKHAI-QRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQ 563
N SQ AVK A+ R L LI GPPGTGKT T ++ Q VK VL A SNIA D
Sbjct: 186 -NESQKLAVKKAVLSRDLYLIHGPPGTGKTRTITEVIVQEVKFNKHKVLATADSNIAADN 244
Query: 564 LTEKIHRT--GLKVVRVCAKSREAIDSPVSFLALHNQIRNMEMNSELKKLLQLKEETGEL 621
+ E + + LKVVRV +R + D L H+ +E + + +++L L+E+ E+
Sbjct: 245 ILEYLIKKYPDLKVVRVGHPTRISKD-----LIQHSLPYLIENHEKYQEILALREKIKEI 299
Query: 622 SS----------------ADE---------KRYR-------------MLKKNAEKSLLDN 643
+DE K YR +++ K +++N
Sbjct: 300 KEQRDKFLKPSPRWRRGMSDEQILKVAKRKKSYRGIPKEKIVSMAEWIIRNKKIKRIINN 359
Query: 644 ---------------ADVICCTCVGAGDPRLLKIKFHSILIDESMQATEPECMVPVILGA 688
ADVI T AG L +F I+IDE QA EP C++P++ G
Sbjct: 360 LDEITEKIMNEILAEADVIVATNSMAGSEILKGWEFDVIVIDEGSQAMEPSCLIPIVKGR 419
Query: 689 KQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVLGIRPFR-----LEVQYRMHPELS 743
K LI+ GDH QL P V+ + L ++LFERL I+ + LE+QYRM+ ++
Sbjct: 420 K-LIMAGDHKQLPPTVLSENEE---LKKTLFERL----IKKYPEFSSILEIQYRMNEKIM 471
Query: 744 KFPSNFFY------EGSLQNGVCAD---ERKLSKIDFPWPVPDKPMLFYVTQGQEEIAGS 794
+FP+ FY + S++N D E ++ ++D + + P+ F +G E
Sbjct: 472 EFPNKMFYNNKLKADESVKNITLLDLVKEEEIDEVDRDI-INEIPVQFINVEGIERKDKE 530
Query: 795 GTSYVNRTEASNVEKITTRFIRCGMKPEQIGVITPYEGQRAFLVQHMQYQGSLPAKIYQE 854
SY N EA V +I + ++ + VITPY+ Q +L + + +
Sbjct: 531 SPSYYNIEEAEKVLEIVKKLVKYKI---PTNVITPYDAQVRYLRRLFEEHNI-------D 580
Query: 855 IEVASVDAFQGREKDLIIMSCVRSNDHQGIGFLNDPRRLNVALTRAKYGIIVIGNPKVLS 914
IEV +VD FQGRE + I++S VR+ + GFL D RRLNVA+TRAK +I+IGN +L
Sbjct: 581 IEVNTVDGFQGRENEAIVISFVRT---KNFGFLKDLRRLNVAITRAKRKLILIGNENLLK 637
Query: 915 KQPLWNNLLNFYK 927
+ ++N ++ + K
Sbjct: 638 QDKVYNEMIKWAK 650
>sp|Q00416|SEN1_YEAST Helicase SEN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SEN1 PE=1 SV=2
Length = 2231
Score = 208 bits (529), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 168/546 (30%), Positives = 266/546 (48%), Gaps = 113/546 (20%)
Query: 505 LNRSQVYAVKHAIQRP-LSLIQGPPGTGKTVTSATIV-YQLVKQTGSP------------ 550
LN SQ A+ +++ + SLIQGPPGTGKT T I+ Y L + S
Sbjct: 1335 LNTSQAEAIVNSVSKEGFSLIQGPPGTGKTKTILGIIGYFLSTKNASSSNVIKVPLEKNS 1394
Query: 551 -----------VLVCAPSNIAVDQLTEKI---------HRTGLKVVRVCAKSREAIDSPV 590
+L+CAPSN AVD++ ++ H+ ++VRV + ++ +
Sbjct: 1395 SNTEQLLKKQKILICAPSNAAVDEICLRLKSGVYDKQGHQFKPQLVRVGRS--DVVNVAI 1452
Query: 591 SFLALHNQI------RNME-----------------------------------MNSELK 609
L L + RN E M++E
Sbjct: 1453 KDLTLEELVDKRIGERNYEIRTDPELERKFNNAVTKRRELRGKLDSESGNPESPMSTEDI 1512
Query: 610 KLLQLK---------------EETGELSSADEKRYRMLKKNAEKSLLDNADVICCTCVGA 654
LQLK +E E +S + + + ++NA+ +L +D+IC T G+
Sbjct: 1513 SKLQLKIRELSKIINELGRDRDEMREKNSVNYRNRDLDRRNAQAHILAVSDIICSTLSGS 1572
Query: 655 GDPRL--LKIKFHSILIDESMQATEPECMVPVILGAKQLILVGDHCQLGPVVMCKKAARA 712
L + IKF +++IDE+ Q TE ++P+ G K+ I+VGD QL P V+ A+
Sbjct: 1573 AHDVLATMGIKFDTVIIDEACQCTELSSIIPLRYGGKRCIMVGDPNQLPPTVLSGAASNF 1632
Query: 713 GLSQSLFERLVVLGIRPFRLEVQYRMHPELSKFPSNFFYEGSLQNGVCADERKLSKIDFP 772
+QSLF R+ P+ L+VQYRMHP +SKFPS+ FY+G L++G D L+K +
Sbjct: 1633 KYNQSLFVRMEK-NSSPYLLDVQYRMHPSISKFPSSEFYQGRLKDGPGMD--ILNKRPWH 1689
Query: 773 WPVPDKPMLFY-VTQGQEEIAGSGTSYVNRTEAS-NVEKITTRFIRCGMKPE---QIGVI 827
P P F+ + G++E SY N E +E + F + K + +IG+I
Sbjct: 1690 QLEPLAPYKFFDIISGRQEQNAKTMSYTNMEEIRVAIELVDYLFRKFDNKIDFTGKIGII 1749
Query: 828 TPYEGQ-RAFLVQHMQYQGSLPAKIYQEIEVASVDAFQGREKDLIIMSCVRSNDHQ-GIG 885
+PY Q + + +Y G + I + I+ ++D FQG+EK++I++SCVR++D + +G
Sbjct: 1750 SPYREQMQKMRKEFARYFGGM---INKSIDFNTIDGFQGQEKEIILISCVRADDTKSSVG 1806
Query: 886 FLNDPRRLNVALTRAKYGIIVIGNPKVLSKQPLWNNLLNFYKEQKVLVEG------PLNN 939
FL D RR+NVALTRAK I V+G+ + L+K LW +L+ K++ L P NN
Sbjct: 1807 FLKDFRRMNVALTRAKTSIWVLGHQRSLAKSKLWRDLIEDAKDRSCLAYACSGFLDPRNN 1866
Query: 940 LKESLI 945
+S++
Sbjct: 1867 RAQSIL 1872
>sp|Q8GYD9|SDE3_ARATH Probable RNA helicase SDE3 OS=Arabidopsis thaliana GN=SDE3 PE=1
SV=1
Length = 1002
Score = 200 bits (509), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 180/595 (30%), Positives = 274/595 (46%), Gaps = 102/595 (17%)
Query: 390 LMQGDELKLRYSYDASKTWSGLGHVIKIPDNFGDEVGLELKSSAGAPTEATTGFSVDFIW 449
L+ GD + +R++YD + G V ++ DEV ++ S A + ++V F +
Sbjct: 295 LVHGDFIFVRHAYDDGTDHAYQGFVHRVE---ADEVHMKFASEFHQRHTAGSVYNVRFTY 351
Query: 450 KSTSFDRMQLALRKFAVDDQSVSAYIYHRLLGHNVDEVLFRCHLPKHFSAPNLPDLNRSQ 509
+ R+ A+ + D + +++ L R K F P P LN Q
Sbjct: 352 NRINTRRLYQAVDAAEMLDPN---FLFPSLHSGK------RMIKTKPF-VPISPALNAEQ 401
Query: 510 VYAVKHAIQ---RPLSLIQGPPGTGKTVTSATIVYQL-VKQTGSPVLVCAPSNIAVDQLT 565
+ +++ + P +I GPPGTGKT+T + QL Q + VLVCAPSN A D +
Sbjct: 402 ICSIEMVLGCKGAPPYVIHGPPGTGKTMTLVEAIVQLYTTQRNARVLVCAPSNSAADHIL 461
Query: 566 EKIHRTGLKVVRVCAKSREAIDSPVSFLALHNQIRNMEMNSELKKLLQLKEETGELSSAD 625
EK+ +C + D+ + +N+ + ++K E D
Sbjct: 462 EKL---------LCLEGVRIKDNEI-----------FRLNAATRSYEEIKPEIIRFCFFD 501
Query: 626 E-----------KRYRMLKKNAEKSLLDNADVICCTCVGAGDPRLLKIKFHSILIDESMQ 674
E RY+++ + L NA+ + + F IL+DE+ Q
Sbjct: 502 ELIFKCPPLKALTRYKLVVSTYMSASLLNAEGVN------------RGHFTHILLDEAGQ 549
Query: 675 ATEPECMVPV---ILGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLV-----VLG 726
A+EPE M+ V L ++L GD QLGPV+ + A GL +S ERL G
Sbjct: 550 ASEPENMIAVSNLCLTETVVVLAGDPRQLGPVIYSRDAESLGLGKSYLERLFECDYYCEG 609
Query: 727 IRPF--RLEVQYRMHPELSKFPSNFFYEGSLQNGVCADERKLSKIDFPWPVPDK--PMLF 782
+ +L YR HPE+ PS FY+G L + L+ ++F +P+K PM+F
Sbjct: 610 DENYVTKLVKNYRCHPEILDLPSKLFYDGELVASKEDTDSVLASLNF---LPNKEFPMVF 666
Query: 783 YVTQGQEEIAGSGTSYVNRTEASNVEKITTRFIR--CGMKPEQIGVITPYEGQRAFLVQH 840
Y QG +E G+ S+ NR E S V + R C ++ E IGVITPY Q
Sbjct: 667 YGIQGCDEREGNNPSWFNRIEISKVIETIKRLTANDC-VQEEDIGVITPYRQQV------ 719
Query: 841 MQYQGSLPAKIYQEIEVASVDAFQGREKDLIIMSCVRSNDHQG-------IGFLNDPRRL 893
M+ + L E++V SV+ FQG+EK +II+S VRS +GFL++PRR
Sbjct: 720 MKIKEVLDRLDMTEVKVGSVEQFQGQEKQVIIISTVRSTIKHNEFDRAYCLGFLSNPRRF 779
Query: 894 NVALTRAKYGIIVIGNPKVLSKQPLWNNLL------NFYK-----EQKVLVEGPL 937
NVA+TRA +++IGNP ++ K WN LL N Y+ EQ+ VE P
Sbjct: 780 NVAITRAISLLVIIGNPHIICKDMNWNKLLWRCVDNNAYQGCGLPEQEEFVEEPF 834
>sp|Q9BYK8|HELZ2_HUMAN Helicase with zinc finger domain 2 OS=Homo sapiens GN=HELZ2 PE=1 SV=6
Length = 2649
Score = 194 bits (494), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 173/565 (30%), Positives = 267/565 (47%), Gaps = 89/565 (15%)
Query: 441 TGFSVDFIWKSTSFDRMQLALRKFAVDDQSVSAYIYHRLLGHNVDEVLFRCHLPKHF--- 497
T F+V+ + K R + A+R + S + LG V + L R +P F
Sbjct: 2087 TLFTVELLPKQLPDLRKEEAVRGL----EEASPLVTSIALGRPVPQPLCRV-IPSRFLER 2141
Query: 498 SAPNLP----DLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVK------QT 547
N+P LN SQ AV+ A+++P ++IQGPPGTGKT+ IV+ K Q
Sbjct: 2142 QTYNIPGGRHKLNPSQNVAVREALEKPFTVIQGPPGTGKTIVGLHIVFWFHKSNQEQVQP 2201
Query: 548 GSP-----------VLVCAPSNIAVDQLTEKI-HRTGLKVVRVCAKSREAIDSPVS---- 591
G P +L C PSN +VD L + R LK +RV ++ EA + PV
Sbjct: 2202 GGPPRGEKRLGGPCILYCGPSNKSVDVLAGLLLRRMELKPLRVYSEQAEASEFPVPRVGS 2261
Query: 592 ------------------FLALHNQIRNME--MNSELKKLLQLKEETGEL-SSADEKRYR 630
+ LH++IR +SE+K + + GEL S D Y+
Sbjct: 2262 RKLLRKSPREGRPNQSLRSITLHHRIRQAPNPYSSEIKAF-DTRLQRGELFSREDLVWYK 2320
Query: 631 MLKKNAEKSLLDNADVICCTCVGAGDPRLLKIKFHSILIDESMQATEPECMVPVIL--GA 688
+ A K LD +VI CTC A L + IL+DE+ ATEPE ++P++ A
Sbjct: 2321 KVLWEARKFELDRHEVILCTCSCAASASLKILDVRQILVDEAGMATEPETLIPLVQFPQA 2380
Query: 689 KQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVLGIRPFRLEVQYRMHPELSKFPSN 748
++++L+GDH QL PVV ++ GL +SLFER L+ QYRMH + FPS
Sbjct: 2381 EKVVLLGDHKQLRPVVKNERLQNLGLDRSLFERYHEDA---HMLDTQYRMHEGICAFPSV 2437
Query: 749 FFYEGSLQNGVCADERKLSKIDFPWPVPDKPMLFYVTQGQEEI------AGSGTSYVNRT 802
FY+ L+ R+ + P++F QG E G+ S N
Sbjct: 2438 AFYKSKLKTW--QGLRRPPSVLGHAGKESCPVIFGHVQGHERSLLVSTDEGNENSKANLE 2495
Query: 803 EASNVEKITTRF-IRCGMKPEQIGVITPYEGQRAFLVQHMQYQGSLPAKIYQEIEVASVD 861
E + V +IT + + ++P+ I V+TPY Q + + + ++ +G + V+S+
Sbjct: 2496 EVAEVVRITKQLTLGRTVEPQDIAVLTPYNAQASEISKALRREG------IAGVAVSSIT 2549
Query: 862 AFQGREKDLIIMSCVRSNDHQGI-------------GFLNDPRRLNVALTRAKYGIIVIG 908
QG E +++S VR+ + GF+ DP ++NVA+TRA+ G+ +IG
Sbjct: 2550 KSQGSEWRYVLVSTVRTCAKSDLDQRPTKSWLKKFLGFVVDPNQVNVAVTRAQEGLCLIG 2609
Query: 909 NPKVLSKQPLWNNLLNFYKEQKVLV 933
+ +L PLW +LL+F + Q+ LV
Sbjct: 2610 DHLLLRCCPLWRSLLDFCEAQQTLV 2634
Score = 80.1 bits (196), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 115/454 (25%), Positives = 180/454 (39%), Gaps = 67/454 (14%)
Query: 491 CHLPKHFSAPNLPDLNRSQVYAVK--------HAIQRPLSLIQGPPGTGKTVTSATIVYQ 542
C LP+ +S P L NR Q AV + P LI GP GTGKT T A +
Sbjct: 501 CALPRPWSVPPLRRGNRKQELAVALIAGWGPGDGRRVPPLLIYGPFGTGKTYTLAMASLE 560
Query: 543 LVKQTGSPVLVCAPSNIAVDQLTEKIHRTGLKVVRVCAKSREAIDSPVSFLALHNQIRNM 602
++++ + VL+C +N A D RE S VS H + +
Sbjct: 561 VIRRPETKVLICTHTNSAADIYI-----------------REYFHSHVS--GGHPEATPL 601
Query: 603 EMNSELKKLLQLKEETGELSSADEKRYRMLKKNAEKSLLDNADVICCTCVGAGDPRLLKI 662
+ + L Q T + + R + ++ L V+ T A + R+
Sbjct: 602 RVMYTDRPLSQTDPVTLQYCCLTDDRQAF--RPPTRAELARHRVVVTTTSQARELRVPVG 659
Query: 663 KFHSILIDESMQATEPECMVPVILGAK--QLILVGDHCQLGPVVMCKKAARAGLSQSLFE 720
F ILIDE+ Q E E + P+ + +L+L GDH Q+ P + ARA +L
Sbjct: 660 FFSHILIDEAAQMLECEALTPLAYASHGTRLVLAGDHMQVTPRLFSVARARAA-EHTLLH 718
Query: 721 RLVVLG-------IRPFRLEVQ--YRMHPELSKFPSNFFYEGSLQNGVCADERKLSKIDF 771
RL + R RL YR + F S FY V ++
Sbjct: 719 RLFLCYQQETHEVARQSRLVFHENYRCTDAIVSFISRHFY-------VAKGNPIHARGKV 771
Query: 772 PWPVPDK-PMLFYVTQGQEEIAGSGTSYVNRTE-ASNVEKITTRF---IRC-GMKPEQIG 825
P P P P++F G + S S++N E A VEK+ + C G + ++
Sbjct: 772 P-PHPRHYPLMFCHVAGSPDRDMSMASWLNLAEIAQVVEKVQEAYNTWPSCWGGREQRCI 830
Query: 826 VITPYEGQRAFLVQHMQYQGSLPAKIYQEIEVASVDAFQGREKDLIIMSCVR------SN 879
+ + Q + L Q ++ + ++ V S + GR+ ++++S V S
Sbjct: 831 CVVSHGAQVSALRQELRR------RDLGQVSVGSFEILPGRQFRVVVLSTVHTCQSLLSP 884
Query: 880 DHQGIGFLNDPRRLNVALTRAKYGIIVIGNPKVL 913
F D R LN LTRA+ ++V+G+ L
Sbjct: 885 GALAPEFFTDARVLNTVLTRAQSQLVVVGDAVAL 918
>sp|B6SFA4|MAA3_ARATH Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana GN=MAA3 PE=2
SV=1
Length = 818
Score = 194 bits (493), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 141/412 (34%), Positives = 215/412 (52%), Gaps = 47/412 (11%)
Query: 551 VLVCAPSNIAVDQLTEKIHRTGL----------KVVRVCAKSREAIDSPVSFLALHNQIR 600
VLVCAPSN A+D++ ++ +GL K+VR+ K+ ++ S VS L Q R
Sbjct: 377 VLVCAPSNSALDEIVLRLLSSGLRDENAQTYTPKIVRIGLKAHHSVAS-VSLDHLVAQKR 435
Query: 601 NMEMNSELKKLLQLKEETGELSSADEKRYRMLKKNAEKSLLDNADVICCTCVGAGDPRLL 660
++ K + G + D R ++L+ A ++ T +G L
Sbjct: 436 GSAID---------KPKQG-TTGTDIDSIRT-------AILEEAAIVFATLSFSGSALLA 478
Query: 661 KIK--FHSILIDESMQATEPECMVPVILGAKQLILVGDHCQLGPVVMCKKAARAGLSQSL 718
K F ++IDE+ QA EP ++P+ KQ+ LVGD QL V+ A +G S+
Sbjct: 479 KSNRGFDVVIIDEAAQAVEPATLIPLATRCKQVFLVGDPKQLPATVISTVAQDSGYGTSM 538
Query: 719 FERLVVLGIRPFRLEVQYRMHPELSKFPSNFFYEGSLQNGVCADERKLSKIDFPWPVPDK 778
FERL G L+ QYRMHPE+ FPS FYEG+L++G +D + D+
Sbjct: 539 FERLQKAGYPVKMLKTQYRMHPEIRSFPSKQFYEGALEDG--SDIEAQTTRDWHKYRCFG 596
Query: 779 PMLFY-VTQGQE-EIAGSGTSYVNRTEASNVEKITTRFIRCGMKPE-----QIGVITPYE 831
P F+ + +G+E + G+ S VN E V I R + M PE Q+ +I+PY
Sbjct: 597 PFCFFDIHEGKESQHPGATGSRVNLDEVEFVLLIYHRLVT--MYPELKSSSQLAIISPYN 654
Query: 832 GQ-RAFLVQHMQYQGSLPAKIYQEIEVASVDAFQGREKDLIIMSCVRSNDHQGIGFLNDP 890
Q + F + + G+ K+ +++ +VD FQGREKD+ I SCVR+N++ IGFL++
Sbjct: 655 YQVKTFKDRFKEMFGTEAEKV---VDINTVDGFQGREKDVAIFSCVRANENGQIGFLSNS 711
Query: 891 RRLNVALTRAKYGIIVIGNPKVLSKQPLWNNLLNFYKEQKVL--VEGPLNNL 940
RR+NV +TRAK ++V+G+ L PLW NL+ +++ L V PLNN
Sbjct: 712 RRMNVGITRAKSSVLVVGSAATLKSDPLWKNLIESAEQRNRLFKVSKPLNNF 763
Score = 37.7 bits (86), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 504 DLNRSQVYAVKHAIQR-PLSLIQGPPGTGKTVTSATIVYQLVKQTGSPV 551
+LN+SQ A+ + R LIQGPPGTGKT T +I+ ++ T + V
Sbjct: 257 NLNKSQKEAIDVGLSRKSFVLIQGPPGTGKTQTILSILGAIMHATPARV 305
>sp|P38935|SMBP2_HUMAN DNA-binding protein SMUBP-2 OS=Homo sapiens GN=IGHMBP2 PE=1 SV=3
Length = 993
Score = 192 bits (489), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 156/457 (34%), Positives = 234/457 (51%), Gaps = 47/457 (10%)
Query: 505 LNRSQVYAVKHAI-QRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQ 563
L+ SQ AV A+ Q+ L++I GPPGTGKT T I+ Q VKQ G VL CAPSNIAVD
Sbjct: 192 LDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQ-GLKVLCCAPSNIAVDN 250
Query: 564 LTEKIHRTGLKVVRVCAKSR--EAIDSPVSFLALHNQIRNMEMNSELKKLL--------- 612
L E++ +++R+ +R E+I S A+ + + ++ ++++K +
Sbjct: 251 LVERLALCKQRILRLGHPARLLESIQQH-SLDAVLARSDSAQIVADIRKDIDQVFVKNKK 309
Query: 613 -QLKEETGELSSADEKRYRMLKKNAEKSLLDN---ADVICCTCVGAGDPRLLKI----KF 664
Q K E + + + LK+ E ++L++ A+V+ T GA LK+ F
Sbjct: 310 TQDKREKSNFRNEIKLLRKELKEREEAAMLESLTSANVVLATNTGASADGPLKLLPESYF 369
Query: 665 HSILIDESMQATEPECMVPVILGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVV 724
++IDE QA E C +P +L A++ IL GDH QL P + KAA AGLS SL ERL
Sbjct: 370 DVVVIDECAQALEASCWIP-LLKARKCILAGDHKQLPPTTVSHKAALAGLSLSLMERLAE 428
Query: 725 -LGIRPFR-LEVQYRMHPELSKFPSNFFYEGSLQNGVCADERKLSKIDFPWPVPDK---- 778
G R R L VQYRMH + ++ S+ Y G L + R L + D P +
Sbjct: 429 EYGARVVRTLTVQYRMHQAIMRWASDTMYLGQL-TAHSSVARHLLR-DLPGVAATEETGV 486
Query: 779 PMLFYVTQG------QEEIAGSGTSYVNRTEASNVEKITTRFIRCGMKPEQIGVITPYEG 832
P+L T G +EE S N E V + G+ I V++PY
Sbjct: 487 PLLLVDTAGCGLFELEEE---DEQSKGNPGEVRLVSLHIQALVDAGVPARDIAVVSPYNL 543
Query: 833 QRAFLVQHMQYQGSLPAKIYQEIEVASVDAFQGREKDLIIMSCVRSNDHQGIGFLNDPRR 892
Q L Q + ++ + E+E+ SVD FQGREK+ +I+S VRSN +GFL + RR
Sbjct: 544 QVDLLRQSLVHR-------HPELEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRR 596
Query: 893 LNVALTRAKYGIIVIGNPKVLSKQPLWNNLLNFYKEQ 929
+NVA+TRA+ + VI + + ++ L+ ++ +
Sbjct: 597 INVAVTRARRHVAVICDSRTVNNHAFLKTLVEYFTQH 633
>sp|Q9EQN5|SMBP2_RAT DNA-binding protein SMUBP-2 OS=Rattus norvegicus GN=Ighmbp2 PE=1
SV=1
Length = 988
Score = 191 bits (485), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 156/458 (34%), Positives = 227/458 (49%), Gaps = 49/458 (10%)
Query: 505 LNRSQVYAVKHAI-QRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQ 563
L+ SQ AV A+ Q+ +++I GPPGTGKT T I+ Q VKQ G VL CAPSNIAVD
Sbjct: 191 LDPSQKEAVSFALAQKEVAIIHGPPGTGKTTTVVEIILQAVKQ-GLKVLCCAPSNIAVDN 249
Query: 564 LTEKIHRTGLKVVRVCAKSR--EAIDSPVSFLALHNQIRNMEMNSELK----------KL 611
L E++ +++R+ +R E++ S A+ + N ++ ++++ K
Sbjct: 250 LVERLALCKKQILRLGHPARLLESVQQH-SLDAVLARSDNAQIVADIRRDIDQVFGKNKK 308
Query: 612 LQLKEETGELSSADEKRYRMLKKNAEKSL---LDNADVICCTCVGAGDPRLLKI----KF 664
Q K E + + + LK+ E ++ L ADV+ T GA LK+ F
Sbjct: 309 TQDKREKSNFRNEIKLLRKELKEREEAAIVQSLSAADVVLATNTGASTDGPLKLLPEDYF 368
Query: 665 HSILIDESMQATEPECMVPVILGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLV- 723
+++DE QA E C +P +L A + IL GDH QL P + KAA AGLS+SL ERL
Sbjct: 369 DVVVVDECAQALEASCWIP-LLKAPKCILAGDHKQLPPTTVSHKAALAGLSRSLMERLAE 427
Query: 724 VLGIRPFR-LEVQYRMHPELSKFPSNFFYEGSLQNGVCADERKLSKIDFPWPVPDK---- 778
G R L VQYRMH ++++ S Y G L L D P V D
Sbjct: 428 KHGAAVVRMLAVQYRMHQAITRWASEAMYHGQLTAHPSVAGHLLK--DLPG-VADTEETS 484
Query: 779 -PMLFYVTQG------QEEIAGSGTSYVNRTEASNVEKITTRFIRCGMKPEQIGVITPYE 831
P+L T G +EE S N E V + G++ I VI PY
Sbjct: 485 VPLLLIDTAGCGLLELEEE---DSQSKGNPGEVRLVTLHIQALVDAGVQAGDIAVIAPYN 541
Query: 832 GQRAFLVQHMQYQGSLPAKIYQEIEVASVDAFQGREKDLIIMSCVRSNDHQGIGFLNDPR 891
Q L Q + + + E+E+ SVD FQGREK+ +I++ VRSN +GFL + R
Sbjct: 542 LQVDLLRQSLSNK-------HPELEIKSVDGFQGREKEAVILTFVRSNRKGEVGFLAEDR 594
Query: 892 RLNVALTRAKYGIIVIGNPKVLSKQPLWNNLLNFYKEQ 929
R+NVA+TRA+ + VI + ++ L++++ E
Sbjct: 595 RINVAVTRARRHVAVICDSHTVNNHAFLKTLVDYFTEH 632
>sp|Q60560|SMBP2_MESAU DNA-binding protein SMUBP-2 OS=Mesocricetus auratus GN=IGHMBP2 PE=1
SV=1
Length = 989
Score = 191 bits (485), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 154/459 (33%), Positives = 229/459 (49%), Gaps = 51/459 (11%)
Query: 505 LNRSQVYAVKHAI-QRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQ 563
L+ SQ AV A+ Q+ +++I GPPGTGKT T I+ Q VKQ G +L CAPSN+AVD
Sbjct: 191 LDPSQKEAVSFALAQKEVAIIHGPPGTGKTTTVVEIILQAVKQ-GLKILCCAPSNVAVDN 249
Query: 564 LTEKIHRTGLKVVRVCAKSREAIDSPV--SFLALHNQIRNMEMNSELKKLL--------- 612
L E++ +++R+ +R ++S S A+ + N ++ ++++K +
Sbjct: 250 LVERLALCKKRILRLGHPAR-LLESAQQHSLDAVLARSDNAQIVADIRKDIDQVFGKNKK 308
Query: 613 -QLKEETGELSSADEKRYRMLKKNAEKSL---LDNADVICCTCVGAGDPRLLKI----KF 664
Q K E + + + LK+ E ++ L ADV+ T GA LK+ F
Sbjct: 309 TQDKREKSNFRNEIKLLRKELKEREEAAIVQSLTAADVVLATNTGASSDGPLKLLPENHF 368
Query: 665 HSILIDESMQATEPECMVPVILGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLV- 723
+++DE QA E C +P +L A + IL GDH QL P + KAA AGLS+SL ERLV
Sbjct: 369 DVVVVDECAQALEASCWIP-LLKAPKCILAGDHRQLPPTTISHKAALAGLSRSLMERLVE 427
Query: 724 VLGIRPFR-LEVQYRMHPELSKFPSNFFYEGSLQNGVCADERKLSKIDFPWPVPDK---- 778
G R L VQYRMH ++++ S Y G L L D P V D
Sbjct: 428 KHGAGAVRMLTVQYRMHQAITRWASEAMYHGQLTAHPSVAGHLLK--DLPG-VADTEETS 484
Query: 779 -PMLFYVTQG-------QEEIAGSGTSYVNRTEASNVEKITTRFIRCGMKPEQIGVITPY 830
P+L T G +E+ G N E V + G+ I VI PY
Sbjct: 485 VPLLLIDTAGCGLLELDEEDSQSKG----NPGEVRLVTLHIQALVDAGVHAGDIAVIAPY 540
Query: 831 EGQRAFLVQHMQYQGSLPAKIYQEIEVASVDAFQGREKDLIIMSCVRSNDHQGIGFLNDP 890
Q L Q + + + E+E+ SVD FQGREK+ +I++ VRSN +GFL +
Sbjct: 541 NLQVDLLRQSLSNK-------HPELEIKSVDGFQGREKEAVILTFVRSNRKGEVGFLAED 593
Query: 891 RRLNVALTRAKYGIIVIGNPKVLSKQPLWNNLLNFYKEQ 929
RR+NVA+TRA+ + VI + + ++ L++++ E
Sbjct: 594 RRINVAVTRARRHVAVICDSRTVNNHAFLKTLVDYFTEH 632
>sp|Q6ZU11|YD002_HUMAN Uncharacterized protein FLJ44066 OS=Homo sapiens PE=2 SV=1
Length = 926
Score = 191 bits (484), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 135/423 (31%), Positives = 219/423 (51%), Gaps = 36/423 (8%)
Query: 520 PLSLIQGPPGTGKTVTSATIVY---QLVKQTGSP---------VLVCAPSNIAVDQLTEK 567
P+++I G G GK+ A ++ QL +++ +P +L+ + +N+AVD++
Sbjct: 470 PITIIHGVFGAGKSYLLAVVILFFVQLFEKSEAPTIGNARPWKLLISSSTNVAVDRVLLG 529
Query: 568 IHRTGLK-VVRVCAKSREAIDSPVSFLALHNQIRNMEMNSELKKLLQLKEETGELSSADE 626
+ G + +RV S I P+ +LH N + +LK+L L +E +L+ +
Sbjct: 530 LLSLGFENFIRV--GSVRKIAKPILPYSLHAGSENE--SEQLKELHALMKE--DLTPTER 583
Query: 627 ----KRYRMLKKNAEKSLLDNADVICCTCVGAGDPRLLKIKFHSILIDESMQATEPECMV 682
K K ++LL V+ TC P + +KF +++DE Q TEP ++
Sbjct: 584 VYVRKSIEQHKLGTNRTLLKQVRVVGVTCAACPFPCMNDLKFPVVVLDECSQITEPASLL 643
Query: 683 PVI-LGAKQLILVGDHCQLGPVVMCKKAARA-GLSQSLFERLVVLGIRPFRLEVQYRMHP 740
P+ ++LILVGD QL P + AA GL Q+LF+RL ++G +P L QYR HP
Sbjct: 644 PIARFECEKLILVGDPKQLPPTIQGSDAAHENGLEQTLFDRLCLMGHKPILLRTQYRCHP 703
Query: 741 ELSKFPSNFFYEGSLQNGVCADERKLSKIDFPWPVPDKPMLFYVTQGQEEIAGSGTSYVN 800
+S ++ FY+G+L NGV ER P + FY +G E+I S+ N
Sbjct: 704 AISAIANDLFYKGALMNGVTEIERS------PLLEWLPTLCFYNVKGLEQIE-RDNSFHN 756
Query: 801 RTEASNVEKITTRFIRCGMKPEQIGVITPYEGQRAFLVQHMQYQGSLPAKIYQEIEVASV 860
EA+ K+ I G+ IGVIT Y+ Q + + H+ + ++V++V
Sbjct: 757 VAEATFTLKLIQSLIASGIAGSMIGVITLYKSQ-MYKLCHLLSAVDFHHPDIKTVQVSTV 815
Query: 861 DAFQGREKDLIIMSCVRSNDHQGIGFLNDPRRLNVALTRAKYGIIVIGNPKVLSKQPLWN 920
DAFQG EK++II+SCVR+ +GF++ +R+NVALTR K ++++GN L K LW
Sbjct: 816 DAFQGAEKEIIILSCVRTRQ---VGFIDSEKRMNVALTRGKRHLLIVGNLACLRKNQLWG 872
Query: 921 NLL 923
++
Sbjct: 873 RVI 875
>sp|P40694|SMBP2_MOUSE DNA-binding protein SMUBP-2 OS=Mus musculus GN=Ighmbp2 PE=1 SV=1
Length = 993
Score = 189 bits (480), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 156/458 (34%), Positives = 226/458 (49%), Gaps = 49/458 (10%)
Query: 505 LNRSQVYAVKHAI-QRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQ 563
L+ SQ AV A+ Q+ L++I GPPGTGKT T I+ Q VKQ G VL CAPSNIAVD
Sbjct: 191 LDLSQKEAVSFALAQKELAIIHGPPGTGKTTTVVEIILQAVKQ-GLKVLCCAPSNIAVDN 249
Query: 564 LTEKIHRTGLKVVRVCAKSR--EAIDSPVSFLALHNQIRNMEMNSELK----------KL 611
L E++ +++R+ +R E++ S A+ + N ++ ++++ K
Sbjct: 250 LVERLALCKKRILRLGHPARLLESVQHH-SLDAVLARSDNAQIVADIRRDIDQVFGKNKK 308
Query: 612 LQLKEETGELSSADEKRYRMLKKNAEKSL---LDNADVICCTCVGAGDPRLLKI----KF 664
Q K E G S + + LK+ E ++ L ADV+ T GA LK+ F
Sbjct: 309 TQDKREKGNFRSEIKLLRKELKEREEAAIVQSLTAADVVLATNTGASSDGPLKLLPEDYF 368
Query: 665 HSILIDESMQATEPECMVPVILGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLV- 723
+++DE QA E C +P +L A + IL GDH QL P + +AA AGLS+SL ERL
Sbjct: 369 DVVVVDECAQALEASCWIP-LLKAPKCILAGDHRQLPPTTVSHRAALAGLSRSLMERLAE 427
Query: 724 VLGIRPFR-LEVQYRMHPELSKFPSNFFYEGSLQNGVCADERKLSKIDFPWPVPDK---- 778
G R L VQYRMH + + S Y G + L D P V D
Sbjct: 428 KHGAGVVRMLTVQYRMHQAIMCWASEAMYHGQFTSHPSVAGHLLK--DLPG-VTDTEETR 484
Query: 779 -PMLFYVTQG------QEEIAGSGTSYVNRTEASNVEKITTRFIRCGMKPEQIGVITPYE 831
P+L T G +EE S N E V + G++ I VI PY
Sbjct: 485 VPLLLIDTAGCGLLELEEE---DSQSKGNPGEVRLVTLHIQALVDAGVQAGDIAVIAPYN 541
Query: 832 GQRAFLVQHMQYQGSLPAKIYQEIEVASVDAFQGREKDLIIMSCVRSNDHQGIGFLNDPR 891
Q L Q + + + E+E+ SVD FQGREK+ ++++ VRSN +GFL + R
Sbjct: 542 LQVDLLRQSLSNK-------HPELEIKSVDGFQGREKEAVLLTFVRSNRKGEVGFLAEDR 594
Query: 892 RLNVALTRAKYGIIVIGNPKVLSKQPLWNNLLNFYKEQ 929
R+NVA+TRA+ + VI + ++ L++++ E
Sbjct: 595 RINVAVTRARRHVAVICDSHTVNNHAFLETLVDYFTEH 632
>sp|Q1LXK4|M10B1_DANRE Putative helicase mov-10-B.1 OS=Danio rerio GN=mov10b.1 PE=2 SV=2
Length = 1013
Score = 184 bits (466), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 188/674 (27%), Positives = 305/674 (45%), Gaps = 123/674 (18%)
Query: 336 YQNIFGPLVKLEADYDKRLKESQTQENVTVRWDVGLNKKSIAYFSLAKTDGDMRLMQGDE 395
Y + F L+ LE D + + +++V++ D +KK + ++ +++GD
Sbjct: 366 YMDRFDLLLYLEEDQMRMDIKRYNKKDVSMVRD--RDKKLLVLELPGVSENRPSVLRGDH 423
Query: 396 LKLRYSYDASKT----WSGLGHVIKIPDNFGDEVGLELKSSAGAPTEATTGFSVDFIWKS 451
L L S + + + G H +++ D+V L FSV+F
Sbjct: 424 LLLTKSEELQNSNVTKYKGYVHRVEL-----DQVKLGFSKRLLERFIDNMKFSVEF---- 474
Query: 452 TSFDRMQLALRKFAVDDQSVSAYIYHRLLGHNVDEVLF----RCHLPKHFSAPNLPDLN- 506
+ +R+ L L+ AV H ++ H++ +VLF R P SA L D
Sbjct: 475 -TINRLPLRLQHRAV----------HMVVQHHLKDVLFPVASRRLNPVSPSALRLFDQKL 523
Query: 507 ------RSQVYAVKHAIQRPLS-LIQGPPGTGKTVTSATIVYQLVKQTG-SPVLVCAPSN 558
++ V + +P L+ GPPGTGKTVT + Q+ K TG + +L CAPSN
Sbjct: 524 EKNPEQKTAVCNIVAGTSKPAPYLVFGPPGTGKTVTIVEAIKQVEKNTGGARILACAPSN 583
Query: 559 IAVDQLTEKI----HRTGLKVVRVCAKSREAIDSPVSFLALHNQIRNMEMNSELKK---L 611
A DQL EK+ H + R+ A SR + P + +E NS ++ +
Sbjct: 584 SAADQLGEKLITSQHVDARNIYRIYASSRNPKEIP----------KVLENNSNVEGENII 633
Query: 612 LQLKEETGELSSADEKRYRMLKKNAEKSLLDNADVICCTCVGAGDPRLLKI-----KFHS 666
KE+ L ++ CT V AG RL+ F
Sbjct: 634 FPCKED-----------------------LMPYKIVVCTLVTAG--RLVSGGFPVGHFSH 668
Query: 667 ILIDESMQATEPECMVPV--ILGAK--QLILVGDHCQLGPVVMCKKAARAGLSQSLFERL 722
I +DE+ A EPE ++ V +L A+ QL+L GD QLGP++ A + GL SL ERL
Sbjct: 669 IFVDEAGHAVEPEIVISVAGLLNAETGQLVLAGDPKQLGPILRSPFAIKYGLGLSLLERL 728
Query: 723 VVL------GIRPF------RLEVQYRMHPELSKFPSNFFYEGSLQNGVCADERKLSKID 770
+ G F +L YR HP + K P+ FY+ L+ CADE S+
Sbjct: 729 MTQNELYQKGDTGFDNRYVTKLLQNYRSHPSILKVPNELFYDNELK--ACADEIS-SRQY 785
Query: 771 FPW---PVPDKPMLFYVTQGQEEIAGSGTSYVNRTEASNVEKITTRFIRCGMK------- 820
W P P++F+ G++E + S+ N +E + + + K
Sbjct: 786 CTWEHLPKRGFPVIFHGVVGKDERESTSPSFFNTSEIDKIMDYLKKLLLTQAKKGIAKIS 845
Query: 821 PEQIGVITPYEGQRAFLVQHMQYQGSLPA-KIYQEIEVASVDAFQGREKDLIIMSCVRS- 878
P+ IG+I PY Q + Q ++ L + +E++V SV+ FQG+E+ +II+S VRS
Sbjct: 846 PKDIGIIAPYRKQVEKIRQAIKIHRELKSLSGIEELKVGSVEEFQGQERKVIIVSTVRSS 905
Query: 879 ------NDHQGIGFLNDPRRLNVALTRAKYGIIVIGNPKVLSKQPLWNNLLNFYKEQKVL 932
+D IGFL + +R NVA+TRAK +I++GNP +L +W +N+ +++
Sbjct: 906 KEHIILDDKFNIGFLKNEKRFNVAVTRAKALLIMVGNPIILRTDEIWGRFMNYCIQERGY 965
Query: 933 VEGPLNNLKESLIL 946
+ +L+E+ ++
Sbjct: 966 TGYDITHLEETDVI 979
>sp|E1BMP7|DNA2_BOVIN DNA replication ATP-dependent helicase/nuclease DNA2 OS=Bos taurus
GN=DNA2 PE=3 SV=3
Length = 1061
Score = 177 bits (449), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 139/474 (29%), Positives = 235/474 (49%), Gaps = 71/474 (14%)
Query: 492 HLPKHFSAPNLPDLNRSQVYAVKHAI-QRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSP 550
H K A L LN+ Q A+K + + +LI G PGTGKT T T+V +++ G
Sbjct: 613 HEAKDTVACILKGLNKPQRQAMKKVLLSKDYTLIVGMPGTGKTTTICTLV-RILYACGFS 671
Query: 551 VLVCAPSNIAVDQLTEKIHRTGLKVVRVCAKSREAIDSPVSFLALHNQIRNMEMNSELKK 610
VL+ + ++ AVD + K+ + + +R L +
Sbjct: 672 VLLTSYTHSAVDNILLKLAKFKIGFLR------------------------------LGQ 701
Query: 611 LLQLKEETGELSSADEKRYRMLKKNAEKSLLDNAD-VICCTCVGAGDPRLLKIKFHSILI 669
+ ++ + + + + R + +K A L N+ ++ TC+G P + F ++
Sbjct: 702 IQKVHPDIQKFTEEEICRSKSIKSLALLEELYNSQLIVATTCMGINHPIFSRKTFDFCIV 761
Query: 670 DESMQATEPECMVPVILGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVLGIRP 729
DE+ Q ++P C+ P+ +++ +LVGDH QL P+V+ ++A G+S+SLF+RL
Sbjct: 762 DEASQISQPVCLGPLFF-SRRFVLVGDHQQLPPLVLNREARALGMSESLFKRLEQNKNAV 820
Query: 730 FRLEVQYRMHPELSKFPSNFFYEGSLQNGVCADERKLSKIDFP----------------- 772
+L VQYRM+ ++ + YEG L+ G +D+ + I+ P
Sbjct: 821 VQLTVQYRMNSKIMSLSNKLTYEGKLECG--SDKVANAVINLPNFKDVKLELEFYADYSE 878
Query: 773 --WPV----PDKPMLFYVTQ---GQEEIAGSGTSYVNRTEASNVEKITTRFIRCGMKPEQ 823
W + P+ P+ F T E++ G S N EA V +T+ FI+ G KP
Sbjct: 879 NPWLIAAFEPNNPVCFLNTHKVPAPEQVEKGGVS--NIMEAKLVVFLTSVFIKAGCKPSD 936
Query: 824 IGVITPYEGQRAFLVQHMQYQGSLPAKIYQEIEVASVDAFQGREKDLIIMSCVRSNDHQG 883
IG+I PY Q+ ++ + Q S+ +EV +VD +QGR+K ++++S VRSN+
Sbjct: 937 IGIIAPYR-QQLKVISDLLAQSSVGM-----VEVNTVDRYQGRDKSIVVVSFVRSNEDGT 990
Query: 884 IG-FLNDPRRLNVALTRAKYGIIVIGNPKVLSKQPLWNNLLNFYKEQKVLVEGP 936
+G L D RRLNVA+TRAK+ +I++G LS+ P LLN +K++++ P
Sbjct: 991 LGELLKDWRRLNVAITRAKHKLILLGCVPSLSRYPPLRKLLNHLNSEKLIIDLP 1044
>sp|Q7Z333|SETX_HUMAN Probable helicase senataxin OS=Homo sapiens GN=SETX PE=1 SV=4
Length = 2677
Score = 174 bits (442), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 158/558 (28%), Positives = 256/558 (45%), Gaps = 118/558 (21%)
Query: 502 LPDLNRSQ------VYA-VKHAIQ-RPLSLIQGPPGTGKTVTSATIVYQLVKQTG----- 548
L D N Q YA VKH+ + LI GPPGTGK+ T ++Y+L+ +
Sbjct: 1931 LRDFNEDQKKAIETAYAMVKHSPSVAKICLIHGPPGTGKSKTIVGLLYRLLTENQRKGHS 1990
Query: 549 ----------SPVLVCAPSNIAVDQLTEKI----------------HRTGLKVVRVCAKS 582
+ VLVCAPSN AVD+L +KI + + +VR+ +
Sbjct: 1991 DENSNAKIKQNRVLVCAPSNAAVDELMKKIILEFKEKCKDKKNPLGNCGDINLVRLGPE- 2049
Query: 583 REAIDSPVSFLALHNQIRNMEMNSELK------------------------------KLL 612
++I+S V +L +Q+ N M EL + +
Sbjct: 2050 -KSINSEVLKFSLDSQV-NHRMKKELPSHVQAMHKRKEFLDYQLDELSRQRALCRGGREI 2107
Query: 613 QLKEETGELSSADEKRYRMLKK---------NAEKSLLDNADVICCTCVGAGDPRLLK-- 661
Q +E +S ++R + K + ++ + +ICCT +G L
Sbjct: 2108 QRQELDENISKVSKERQELASKIKEVQGRPQKTQSIIILESHIICCTLSTSGGLLLESAF 2167
Query: 662 -----IKFHSILIDESMQATEPECMVPVILGAKQLILVGDHCQLGPVVMCKKAARAGLSQ 716
+ F +++DE+ Q+ E E + P+I +LILVGD QL P V+ KA G Q
Sbjct: 2168 RGQGGVPFSCVIVDEAGQSCEIETLTPLIHRCNKLILVGDPKQLPPTVISMKAQEYGYDQ 2227
Query: 717 SLFERLVVL-----------GIRPFRLEVQYRMHPELSKFPSNFFYEGSLQNGVCADERK 765
S+ R L + +L VQYRMHP++ FPSN+ Y +L+ + +
Sbjct: 2228 SMMARFCRLLEENVEHNMISRLPILQLTVQYRMHPDICLFPSNYVYNRNLKTNRQTEAIR 2287
Query: 766 LSKIDFPWPVPDKP-MLFYVTQGQEEIAGSGTSYVNRTEASNVEKIT--TRFIRCGMKPE 822
S D+P+ +P ++F V G E SY+N E V +I + R +
Sbjct: 2288 CSS-DWPF----QPYLVFDVGDGSER--RDNDSYINVQEIKLVMEIIKLIKDKRKDVSFR 2340
Query: 823 QIGVITPYEGQRAFLVQHM--QYQGSLPAKIYQEIEVASVDAFQGREKDLIIMSCVRSND 880
IG+IT Y+ Q+ + + + ++ PA EV +VDAFQGR+KD +I++CVR+N
Sbjct: 2341 NIGIITHYKAQKTMIQKDLDKEFDRKGPA------EVDTVDAFQGRQKDCVIVTCVRANS 2394
Query: 881 HQG-IGFLNDPRRLNVALTRAKYGIIVIGNPKVLSKQPLWNNLLNFYKEQKVLVEGPLNN 939
QG IGFL +RLNV +TRAKY + ++G+ + L + WN L+ +++ +++ N
Sbjct: 2395 IQGSIGFLASLQRLNVTITRAKYSLFILGHLRTLMENQHWNQLIQDAQKRGAIIKTCDKN 2454
Query: 940 LKESLILFSKPKQYFKKN 957
+ + K K +++
Sbjct: 2455 YRHDAVKILKLKPVLQRS 2472
>sp|A2AKX3|SETX_MOUSE Probable helicase senataxin OS=Mus musculus GN=Setx PE=2 SV=1
Length = 2646
Score = 174 bits (442), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 158/557 (28%), Positives = 262/557 (47%), Gaps = 116/557 (20%)
Query: 502 LPDLNRSQ------VYA-VKHAIQ-RPLSLIQGPPGTGKTVTSATIVYQLVKQTG----- 548
L D N Q YA VKH+ + LI GPPGTGK+ T ++Y+L+ +
Sbjct: 1907 LKDFNEDQKKAIETAYAMVKHSPSVAKICLIHGPPGTGKSKTIVGLLYRLLTENQRKGHS 1966
Query: 549 ----------SPVLVCAPSNIAVDQLTEKI----------------HRTGLKVVRVCAKS 582
+ VLVCAPSN AVD+L +KI + + +VR+ +
Sbjct: 1967 DENFNAKIKQNRVLVCAPSNAAVDELMKKIILEFKEKCKDKKNPLGNCGDINLVRLGPE- 2025
Query: 583 REAIDSPVSFLALHNQIRNM---EMNSELKKLLQLKE----ETGELSS------------ 623
++I++ V +L +Q+ + ++ S ++++L+ KE + ELS
Sbjct: 2026 -KSINTEVLKFSLDSQVNHRMKKDLPSHIQEMLRRKEILDAQLDELSRQRALCRGGREMQ 2084
Query: 624 ----------ADEKRYRMLKK---------NAEKSLLDNADVICCTCVGAGDPRLLK--- 661
++R + K A+ +++ + VICCT +G L
Sbjct: 2085 RQELDEHIAIVSKERQELASKIKEVQGRPQRAQNTIILESHVICCTLSTSGGLLLESAFR 2144
Query: 662 ----IKFHSILIDESMQATEPECMVPVILGAKQLILVGDHCQLGPVVMCKKAARAGLSQS 717
+ F +++DE+ Q+ E E + P+I +LILVGD QL P V+ KA G QS
Sbjct: 2145 GQGGVPFSCVIVDEAGQSCEVETLSPLIHRCNKLILVGDPKQLPPTVISMKAQEYGYDQS 2204
Query: 718 LFERLV----------VLGIRP-FRLEVQYRMHPELSKFPSNFFYEGSLQNGVCADERKL 766
+ R ++G P +L +QYRMHP++ FPSN+ Y +L+ + +
Sbjct: 2205 MMARFCKLLEENVEQNMIGRLPVLQLTIQYRMHPDICLFPSNYVYNKNLKTNRLTESIRC 2264
Query: 767 SKIDFPWPVPDKP-MLFYVTQGQEEIAGSGTSYVNRTEASNVEKIT--TRFIRCGMKPEQ 823
S WP +P ++F V G E SY+N E V +I + R +
Sbjct: 2265 SS---EWPF--QPYLVFDVGDGSER--RDNDSYINVQEIKLVMEIIKLIKEKRKDISFRN 2317
Query: 824 IGVITPYEGQRAFLVQHM--QYQGSLPAKIYQEIEVASVDAFQGREKDLIIMSCVRSNDH 881
IG+IT Y+ Q+ + + + ++ PA EV +VDAFQGR+KD II++CVR++
Sbjct: 2318 IGIITHYKAQKTMIQKDLEKEFDKKGPA------EVDTVDAFQGRQKDCIIVTCVRASAV 2371
Query: 882 QG-IGFLNDPRRLNVALTRAKYGIIVIGNPKVLSKQPLWNNLLNFYKEQKVLVEGPLNNL 940
QG IGFL +RLNV +TRAKY + ++G+ + L + W L+ +++ +++ N
Sbjct: 2372 QGSIGFLASLQRLNVTITRAKYSLFILGHLRTLMENQHWYELIQDAQKRGAIIKTSDPNY 2431
Query: 941 KESLILFSKPKQYFKKN 957
+ + K K +++
Sbjct: 2432 RHDAMKILKLKPVLQRS 2448
>sp|P51530|DNA2_HUMAN DNA replication ATP-dependent helicase/nuclease DNA2 OS=Homo sapiens
GN=DNA2 PE=1 SV=3
Length = 1060
Score = 173 bits (439), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 142/474 (29%), Positives = 229/474 (48%), Gaps = 72/474 (15%)
Query: 492 HLPKHFSAPNLPDLNRSQVYAVKHAI-QRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSP 550
H K A L LN+ Q A+K + + +LI G PGTGKT T T+V +++ G
Sbjct: 613 HDAKDTVACILKGLNKPQRQAMKKVLLSKDYTLIVGMPGTGKTTTICTLV-RILYACGFS 671
Query: 551 VLVCAPSNIAVDQLTEKIHRTGLKVVRV--CAKSREAIDSPVSFLALHNQIRNMEM-NSE 607
VL+ + ++ AVD + K+ + + +R+ K AI Q E+ S+
Sbjct: 672 VLLTSYTHSAVDNILLKLAKFKIGFLRLGQIQKVHPAI----------QQFTEQEICRSK 721
Query: 608 LKKLLQLKEETGELSSADEKRYRMLKKNAEKSLLDNADVICCTCVGAGDPRLLKIKFHSI 667
K L L EE L ++ ++ TC+G P + F
Sbjct: 722 SIKSLALLEE----------------------LYNSQLIVATTCMGINHPIFSRKIFDFC 759
Query: 668 LIDESMQATEPECMVPVILGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVLGI 727
++DE+ Q ++P C+ P+ +++ +LVGDH QL P+V+ ++A G+S+SLF+RL
Sbjct: 760 IVDEASQISQPICLGPLFF-SRRFVLVGDHQQLPPLVLNREARALGMSESLFKRLEQNKS 818
Query: 728 RPFRLEVQYRMHPELSKFPSNFFYEGSLQNG------VCADERKLSKI-----------D 770
+L VQYRM+ ++ + YEG L+ G + R + D
Sbjct: 819 AVVQLTVQYRMNSKIMSLSNKLTYEGKLECGSDKVANAVINLRHFKDVKLELEFYADYSD 878
Query: 771 FPWPV----PDKPMLFYVTQ---GQEEIAGSGTSYVNRTEASNVEKITTRFIRCGMKPEQ 823
PW + P+ P+ F T E++ G S N TEA + +T+ F++ G P
Sbjct: 879 NPWLMGVFEPNNPVCFLNTDKVPAPEQVEKGGVS--NVTEAKLIVFLTSIFVKAGCSPSD 936
Query: 824 IGVITPYEGQRAFLVQHMQYQGSLPAKIYQEIEVASVDAFQGREKDLIIMSCVRSNDHQG 883
IG+I PY Q ++ L A+ +EV +VD +QGR+K ++++S VRSN
Sbjct: 937 IGIIAPYR-------QQLKIINDLLARSIGMVEVNTVDKYQGRDKSIVLVSFVRSNKDGT 989
Query: 884 IG-FLNDPRRLNVALTRAKYGIIVIGNPKVLSKQPLWNNLLNFYKEQKVLVEGP 936
+G L D RRLNVA+TRAK+ +I++G L+ P LLN +K++++ P
Sbjct: 990 VGELLKDWRRLNVAITRAKHKLILLGCVPSLNCYPPLEKLLNHLNSEKLIIDLP 1043
>sp|Q0V8H6|MOV10_BOVIN Putative helicase MOV-10 OS=Bos taurus GN=MOV10 PE=2 SV=1
Length = 1003
Score = 173 bits (438), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 147/474 (31%), Positives = 221/474 (46%), Gaps = 84/474 (17%)
Query: 506 NRSQVYAVKHAIQ---RPLS-LIQGPPGTGKTVTSATIVYQLVKQ-TGSPVLVCAPSNIA 560
N Q+ A+KH + RP +I GPPGTGKTVT + Q+VK + +L CAPSN
Sbjct: 500 NPEQLQAMKHIVMGTTRPAPYIIFGPPGTGKTVTLVEAIKQVVKHLPKAHILACAPSNSG 559
Query: 561 VDQLTEKIHRTGL--KVVRVCAKSREAIDSPVSFLALHNQIRNMEMNSELKKLLQLKEET 618
D L +++ R L + R+ A SR+ P ++K +
Sbjct: 560 ADLLCQRL-RVHLPSSIYRLLAPSRDIHLVP----------------EDIKPCCNWDAKK 602
Query: 619 GELSSADEKRYRMLKKNAEKSLLDNADVICCTCVGAGDPRLLKIKFHSILIDESMQATEP 678
G+ +K+ + E +L + V A P F I IDE+ A EP
Sbjct: 603 GDFVFPSKKKLQ------EYRVLITTLITASRLVSAQFP---IDHFTHIFIDEAGHAMEP 653
Query: 679 ECMVPV--ILGAK-------QLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVL---- 725
E +V + ++ K QL+L GD QLGPV+ C + GL SL ERL+
Sbjct: 654 ESLVAIAGLMEVKEADNPGGQLVLAGDPRQLGPVLRCPLTQKHGLGYSLLERLLTFNALY 713
Query: 726 -----GIRP---FRLEVQYRMHPELSKFPSNFFYEGSLQNGVCADERKLSKIDFPW---P 774
G P +L YR HP + P+ +Y+G LQ CAD + W P
Sbjct: 714 KKGPDGYNPQFITKLLRNYRSHPTILDVPNRLYYDGELQ--ACADVVDRERF-CRWEGLP 770
Query: 775 VPDKPMLFYVTQGQEEIAGSGTSYVNRTEASNVEKITTRFI-------RCGMKPEQIGVI 827
D P++F+ G++E G+ S+ N EA+ V + + + + P +GVI
Sbjct: 771 RQDFPIIFHGVMGKDEREGNSPSFFNPEEAATVTSYLKQLLAPSSKKGKARLSPRSVGVI 830
Query: 828 TPYEGQRAFLVQHMQYQGSLPAKIYQ------EIEVASVDAFQGREKDLIIMSCVRSNDH 881
+PY Q V+ ++Y + K + +++V SV+ FQG+E+ +I++S VRS+
Sbjct: 831 SPYRKQ----VEKIRYCITKLDKQLRGLDDIKDLKVGSVEEFQGQERSVILISTVRSSQS 886
Query: 882 Q-------GIGFLNDPRRLNVALTRAKYGIIVIGNPKVLSKQPLWNNLLNFYKE 928
+GFL +P+R NVA+TRAK +IV+GNP +L P W L F KE
Sbjct: 887 FVQLDLDFNLGFLKNPKRFNVAVTRAKALLIVVGNPLLLGHDPDWKVFLEFCKE 940
>sp|D3ZG52|DNA2_RAT DNA replication ATP-dependent helicase/nuclease DNA2 OS=Rattus
norvegicus GN=Dna2 PE=3 SV=1
Length = 1059
Score = 171 bits (434), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 137/472 (29%), Positives = 229/472 (48%), Gaps = 69/472 (14%)
Query: 492 HLPKHFSAPNLPDLNRSQVYAVKHAI-QRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSP 550
H K A L LN+ Q A+K + + +LI G PGTGKT T +V +++ G
Sbjct: 613 HDAKDTVANILKGLNKPQRQAMKKVLLSKDYTLIVGMPGTGKTTTICALV-RILSACGFS 671
Query: 551 VLVCAPSNIAVDQLTEKIHRTGLKVVRVCAKSREAIDSPVSFLALHNQIRNMEMNSELKK 610
VL+ + ++ AVD + K+ + + +R+ + +H I+ E+ +
Sbjct: 672 VLLTSYTHSAVDNILLKLAKFKIGFLRLGQSHK-----------VHPDIQKF-TEEEMCR 719
Query: 611 LLQLKEETGELSSADEKRYRMLKKNAEKSLLDNADVICCTCVGAGDPRLLKIKFHSILID 670
L + L+ +E L ++ V+ TC+G P + F ++D
Sbjct: 720 LRSI----ASLAHLEE-------------LYNSHPVVATTCMGISHPMFSRKTFDFCIVD 762
Query: 671 ESMQATEPECMVPVILGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVLGIRPF 730
E+ Q ++P C+ P+ +++ +LVGDH QL P+V+ ++A G+S+SLF+RL
Sbjct: 763 EASQISQPICLGPLFF-SRRFVLVGDHKQLPPLVLNREARALGMSESLFKRLERNESAVV 821
Query: 731 RLEVQYRMHPELSKFPSNFFYEGSLQNGVCADERKLSKI------------------DFP 772
+L +QYRM+ ++ + YEG L+ C +R + + D P
Sbjct: 822 QLTIQYRMNRKIMSLSNKLTYEGKLE---CGSDRVANAVITLPNLKDVRLEFYADYSDNP 878
Query: 773 WPV----PDKPMLFYVTQ---GQEEIAGSGTSYVNRTEASNVEKITTRFIRCGMKPEQIG 825
W PD P+ F T E+I G S N TEA + +T+ FI+ G P IG
Sbjct: 879 WLAGVFEPDNPVCFLNTDKVPAPEQIENGGVS--NVTEARLIVFLTSTFIKAGCSPSDIG 936
Query: 826 VITPYEGQRAFLVQHMQYQGSLPAKIYQEIEVASVDAFQGREKDLIIMSCVRSNDHQGIG 885
+I PY Q+ + + + S+ +EV +VD +QGR+K LI++S VRSN+ +G
Sbjct: 937 IIAPYR-QQLRTITDLLARSSVGM-----VEVNTVDKYQGRDKSLILVSFVRSNEDGTLG 990
Query: 886 -FLNDPRRLNVALTRAKYGIIVIGNPKVLSKQPLWNNLLNFYKEQKVLVEGP 936
L D RRLNVA+TRAK+ +I++G+ L + P L + ++++ P
Sbjct: 991 ELLKDWRRLNVAITRAKHKLILLGSVSSLKRFPPLEKLFDHLNAEQLISNLP 1042
>sp|Q99MV5|M10L1_MOUSE Putative helicase Mov10l1 OS=Mus musculus GN=Mov10l1 PE=1 SV=1
Length = 1187
Score = 170 bits (431), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 145/466 (31%), Positives = 222/466 (47%), Gaps = 87/466 (18%)
Query: 503 PDLNRSQVYAVKHAIQ---RPLSLIQ-GPPGTGKTVTSATIVYQL-VKQTGSPVLVCAPS 557
P LN +Q AV+ + RPL I GPPGTGKTVT V Q+ S +LVCAPS
Sbjct: 745 PVLNENQKLAVRRILSGDCRPLPYILFGPPGTGKTVTIIEAVLQVHYALPDSRILVCAPS 804
Query: 558 NIAVDQLTEKIHRTGLKVVRVCAKSREAIDSPVSFLALHNQIRNME-MNSELKKLLQLKE 616
N A D + ++H + + P + + ++ R E + +K + E
Sbjct: 805 NSAADLVCLRLHES-------------KVPKPAAMVRVNATCRFEETIIDAIKPYCRDGE 851
Query: 617 ETGELSSADEKRYRMLKKNAEKSLLDNADVICCTCVGAGDPRLLKIK---FHSILIDESM 673
+ S R+R +I TC AG + ++ F + +DE+
Sbjct: 852 DIWRAS-----RFR---------------IIITTCSSAGLFYQIGVRVGYFTHVFVDEAG 891
Query: 674 QATEPECMVPVILGAK---QLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVLGIRP- 729
QA+EPEC++P+ L + Q++L GD QLGPV+ + A GL+ S+ ERL+ RP
Sbjct: 892 QASEPECLIPLGLISDINGQIVLAGDPMQLGPVIKSRLAMAYGLNVSMLERLMS---RPA 948
Query: 730 -------------------FRLEVQYRMHPELSKFPSNFFYEGSLQNGVCADERKLSKID 770
+L YR H L PS FY L+ VCAD + ++ +
Sbjct: 949 YLRDENAFGACGAYNPLLVTKLVKNYRSHSALLALPSRLFYHRELE--VCADPKVVTSLL 1006
Query: 771 FPWPVPDK--PMLFYVTQGQEEIAGSGTSYVNRTEASNVEK---ITTRFIRCGMKPEQIG 825
+P K P++F+ +G E G S+ + EA V + + R + + + IG
Sbjct: 1007 GWEKLPRKGFPLIFHGVRGNEAREGRSPSWFSPAEAVQVMRYCCLLARSVSSQVSSKDIG 1066
Query: 826 VITPYEGQRAFLVQHMQYQGSLPAKIYQEIEVASVDAFQGREKDLIIMSCVRSN------ 879
VITPY Q V+ ++ L +I+V SV+ FQG+E +I++S VRSN
Sbjct: 1067 VITPYRKQ----VEKIKIL--LRNVDLTDIKVGSVEEFQGQEYLVIVISTVRSNEDRFED 1120
Query: 880 DHQGIGFLNDPRRLNVALTRAKYGIIVIGNPKVLSKQPLWNNLLNF 925
D +GFL++ +R NVA+TR K +I++GNP VL + P + LL +
Sbjct: 1121 DRYFLGFLSNSKRFNVAITRPKALLIILGNPHVLVRDPCFGALLEY 1166
>sp|Q6ZQJ5|DNA2_MOUSE DNA replication ATP-dependent helicase/nuclease DNA2 OS=Mus musculus
GN=Dna2 PE=2 SV=2
Length = 1062
Score = 170 bits (431), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 142/475 (29%), Positives = 236/475 (49%), Gaps = 73/475 (15%)
Query: 492 HLPKHFSAPNLPDLNRSQVYAVKHAI-QRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSP 550
H K A L LN+ Q A+K + + +LI G PGTGKT T +V +++ G
Sbjct: 614 HDAKDTVANILKGLNKPQRQAMKRVLLSKDYTLIVGMPGTGKTTTICALV-RILSACGFS 672
Query: 551 VLVCAPSNIAVDQLTEKIHRTGLKVVRVCAKSREAIDSPVSFLALHNQIRNMEMNSELKK 610
VL+ + ++ AVD + K+ AK + V FL L ++ +++ +++K
Sbjct: 673 VLLTSYTHSAVDNILLKL-----------AKFK------VGFLRLG---QSHKVHPDIQK 712
Query: 611 LLQLKEETGELSSADEKRYRMLKKNAE-KSLLDNADVICCTCVGAGDPRLLKIKFHSILI 669
+ EE R R + A + L ++ ++ TC+G P + F ++
Sbjct: 713 FTE--EEIC--------RSRSIASLAHLEELYNSHPIVATTCMGINHPIFSRKTFDFCIV 762
Query: 670 DESMQATEPECMVPVILGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVLGIRP 729
DE+ Q ++P C+ P+ +++ +LVGDH QL P+V+ ++A G+S+SLF+RL
Sbjct: 763 DEASQISQPVCLGPLFF-SRRFVLVGDHQQLPPLVVNREARALGMSESLFKRLERNESAV 821
Query: 730 FRLEVQYRMHPELSKFPSNFFYEGSLQNGVCADERKLSKI-------------------- 769
+L VQYRM+ ++ + Y G L+ C +R + +
Sbjct: 822 VQLTVQYRMNRKIMSLSNKLTYAGKLE---CGSDRVANAVLALPNLKDARLSLQLYADYS 878
Query: 770 DFPWPV----PDKPMLFYVTQ---GQEEIAGSGTSYVNRTEASNVEKITTRFIRCGMKPE 822
D PW PD P+ F T E++ G S N TEA + +T+ FI+ G P
Sbjct: 879 DSPWLAGVLEPDNPVCFLNTDKVPAPEQVENGGVS--NVTEARLIVFLTSTFIKAGCSPS 936
Query: 823 QIGVITPYEGQRAFLVQHMQYQGSLPAKIYQEIEVASVDAFQGREKDLIIMSCVRSNDHQ 882
IGVI PY Q+ ++ + + S+ +EV +VD +QGR+K LI++S VRSN+
Sbjct: 937 DIGVIAPYR-QQLRIISDLLARSSVGM-----VEVNTVDKYQGRDKSLILVSFVRSNEDG 990
Query: 883 GIG-FLNDPRRLNVALTRAKYGIIVIGNPKVLSKQPLWNNLLNFYKEQKVLVEGP 936
+G L D RRLNVALTRAK+ +I++G+ L + P L + ++++++ P
Sbjct: 991 TLGELLKDWRRLNVALTRAKHKLILLGSVSSLKRFPPLGTLFDHLNAEQLILDLP 1045
>sp|Q9BXT6|M10L1_HUMAN Putative helicase Mov10l1 OS=Homo sapiens GN=MOV10L1 PE=1 SV=1
Length = 1211
Score = 169 bits (429), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 150/466 (32%), Positives = 223/466 (47%), Gaps = 87/466 (18%)
Query: 503 PDLNRSQVYAVKHAIQ---RPLSLIQ-GPPGTGKTVTSATIVYQL-VKQTGSPVLVCAPS 557
P LN +Q AVK + RPL I GPPGTGKTVT V Q+ S +LVCAPS
Sbjct: 743 PVLNENQKLAVKRILSGDCRPLPYILFGPPGTGKTVTIIEAVLQVHFALPDSRILVCAPS 802
Query: 558 NIAVDQLTEKIHRTGLKVVRVCAKSREAIDSPVSFLALHNQIRNMEMNSE-LKKLLQLKE 616
N A D + ++H + KV++ P + + ++ R E+ + +K + E
Sbjct: 803 NSAADLVCLRLHES--KVLQ-----------PATMVRVNATCRFEEIVIDAVKPYCRDGE 849
Query: 617 ETGELSSADEKRYRMLKKNAEKSLLDNADVICCTCVGAGDPRLLKIK---FHSILIDESM 673
+ + S R+R +I TC +G + ++ F + +DE+
Sbjct: 850 DIWKAS-----RFR---------------IIITTCSSSGLFYQIGVRVGHFTHVFVDEAG 889
Query: 674 QATEPECMVPVILGAK---QLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVLGIRPF 730
QA+EPEC++P+ L + Q++L GD QLGPV+ + A GL+ S ERL+ RP
Sbjct: 890 QASEPECLIPLGLMSDISGQIVLAGDPMQLGPVIKSRLAMAYGLNVSFLERLMS---RPA 946
Query: 731 --------------------RLEVQYRMHPELSKFPSNFFYEGSLQNGVCADERKLSKID 770
+L YR H L PS FY L+ VCAD ++ +
Sbjct: 947 YQRDENAFGACGAHNPLLVTKLVKNYRSHEALLMLPSRLFYHRELE--VCADPTVVTSLL 1004
Query: 771 FPWPVPDK--PMLFYVTQGQEEIAGSGTSYVNRTEASNVEK---ITTRFIRCGMKPEQIG 825
+P K P++F+ +G E G S+ N EA V + + I + IG
Sbjct: 1005 GWEKLPKKGFPLIFHGVRGSEAREGKSPSWFNPAEAVQVLRYCCLLAHSISSQVSASDIG 1064
Query: 826 VITPYEGQRAFLVQHMQYQGSLPAKIYQEIEVASVDAFQGREKDLIIMSCVRSN------ 879
VITPY Q V+ ++ L +I+V SV+ FQG+E +II+S VRSN
Sbjct: 1065 VITPYRKQ----VEKIRIL--LRNVDLMDIKVGSVEEFQGQEYLVIIISTVRSNEDRFED 1118
Query: 880 DHQGIGFLNDPRRLNVALTRAKYGIIVIGNPKVLSKQPLWNNLLNF 925
D +GFL++ +R NVA+TR K +IV+GNP VL + P + LL +
Sbjct: 1119 DRYFLGFLSNSKRFNVAITRPKALLIVLGNPHVLVRDPCFGALLEY 1164
>sp|P23249|MOV10_MOUSE Putative helicase MOV-10 OS=Mus musculus GN=Mov10 PE=1 SV=2
Length = 1004
Score = 168 bits (425), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 145/477 (30%), Positives = 221/477 (46%), Gaps = 90/477 (18%)
Query: 506 NRSQVYAVKHAIQ---RPLS-LIQGPPGTGKTVTSATIVYQLVKQ-TGSPVLVCAPSNIA 560
N Q+ A+KH ++ RP +I GPPGTGKTVT + Q+VK + +L CAPSN
Sbjct: 501 NPEQLQAMKHIVRGTTRPAPYIIFGPPGTGKTVTLVEAIKQVVKHLPKAHILACAPSNSG 560
Query: 561 VDQLTEKIHRTGLKVVRVCAKSREAIDSPVSFLALHNQIRNMEMNSE-LKKLLQLKEETG 619
D L +++ + P S L R++ M E +K + G
Sbjct: 561 ADLLCQRLR----------------VHLPSSIYRLLAPSRDIRMVPEDIKTCCNWDAKKG 604
Query: 620 ELSSADEKRYRMLKKNAEKSLLDNADVICCTCVGAGDPRLLKIKF-----HSILIDESMQ 674
E +K L V+ T + A RL+ +F I IDE+
Sbjct: 605 EYVYPAKKH------------LQQYRVLITTLITAS--RLVSAQFPIDHFTHIFIDEAGH 650
Query: 675 ATEPECMVPV--ILGAK-------QLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVL 725
EPE +V + ++ K QL+L GD QLGPV+ A + GL SL ERL+
Sbjct: 651 CMEPESLVAIAGLMDVKETGNPGGQLVLAGDPRQLGPVLRSPLALKHGLGYSLLERLLAY 710
Query: 726 ---------GIRP---FRLEVQYRMHPELSKFPSNFFYEGSLQNGVCADERKLSKIDFPW 773
G P +L YR HP + P+ +Y+G LQ CAD +
Sbjct: 711 NSLYKKGPNGYDPQFITKLLRNYRSHPTILDIPNQLYYDGELQ--ACADVVDRERFCRWE 768
Query: 774 PVPDK--PMLFYVTQGQEEIAGSGTSYVNRTEASNVEKITTRFI-------RCGMKPEQI 824
+P + P++F+ G++E G+ S+ N EA+ V + + + + P +
Sbjct: 769 GLPQQGFPIIFHGVMGKDEREGNSPSFFNPEEAATVTSYLKQLLAPSSKKGKARLSPRNV 828
Query: 825 GVITPYEGQRAFLVQHMQY-QGSLPAKI-----YQEIEVASVDAFQGREKDLIIMSCVRS 878
GVI+PY Q V+ ++Y L ++ ++++V SV+ FQG+E+ +I++S VRS
Sbjct: 829 GVISPYRKQ----VEKIRYCITKLDRELRGLDDIKDLKVGSVEEFQGQERSVILISTVRS 884
Query: 879 NDHQ-------GIGFLNDPRRLNVALTRAKYGIIVIGNPKVLSKQPLWNNLLNFYKE 928
+ +GFL +P+R NVA+TRAK +IV+GNP +L P W L F KE
Sbjct: 885 SQSFVQLDLDFNLGFLKNPKRFNVAVTRAKALLIVVGNPLLLGHDPDWKTFLEFCKE 941
>sp|Q86AS0|Y4399_DICDI Probable helicase DDB_G0274399 OS=Dictyostelium discoideum
GN=DDB_G0274399 PE=3 SV=1
Length = 967
Score = 167 bits (423), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 122/400 (30%), Positives = 190/400 (47%), Gaps = 33/400 (8%)
Query: 551 VLVCAPSNIAVDQLTEKIHRTGL----------KVVRVCAKSREAIDSPVSFLALHNQIR 600
+L+CAPSN AVD++ ++ R GL +VRV S ++S ++L +R
Sbjct: 464 ILLCAPSNGAVDEIVSRLIRDGLLNADGRKYNPNLVRVGPGSHSDVES----VSLDYMVR 519
Query: 601 NMEMNSELKKLLQLKEETGELSSADEKRYRMLKKNAEKSLLDNADVICCTCVGAGDPRLL 660
+ + + +++ R + +LD AD++ T +G L
Sbjct: 520 CRQQLMNSNSAIPSSSASTAAATSGSSRSTQDTSSIRTLVLDEADIVATTLSFSGASLLT 579
Query: 661 KIK--FHSILIDESMQATEPECMVPVILGAKQLILVGDHCQLGPVVMCKKAARAGLSQSL 718
K+ F ++IDE+ QA E ++P+ G K+++LVGD QL ++ A + QSL
Sbjct: 580 KMAGGFDIVIIDEAAQAVETSTLIPIQHGCKKVVLVGDPKQLPATIISPLAIKYKYDQSL 639
Query: 719 FERLVVLGIRPFRLEVQYRMHPELSKFPSNFFYEGSLQNGVCADERKLSKIDFPWPVPDK 778
F+RL P L QYRMH + FPS FY+ L +G R P+
Sbjct: 640 FQRLQEKN-SPHMLTTQYRMHSLIRAFPSRHFYQDLLLDGPNIPSRATHYHSNPF---FG 695
Query: 779 PMLFYVTQGQEEIAGSGTSYVNRTEASNVEKITTRFIRCGMKPE---QIGVITPYEGQRA 835
P++FY E G S N E + F + + +IG+I+PY Q
Sbjct: 696 PLVFYDLSWSTETKPGGGSVFNEHECKMAMYLFQLFTKVYPDEDFASRIGIISPYRQQVL 755
Query: 836 FLVQHMQYQGSLPAKIYQEIEVASVDAFQGREKDLIIMSCVRS--NDHQGIGFLNDPRRL 893
L + K Y I + +VD FQGRE+++II SCVR+ + GIGFL+D RR+
Sbjct: 756 ALREIF--------KNYPGISIDTVDGFQGREREIIIFSCVRAPVEEGAGIGFLSDVRRM 807
Query: 894 NVALTRAKYGIIVIGNPKVLSKQPLWNNLLNFYKEQKVLV 933
NVALTR + ++++GN K LS WN L+ + + L+
Sbjct: 808 NVALTRPRSSLLILGNTKALSINKDWNELIQHTQNNQQLI 847
Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 506 NRSQVYAVKHAIQ-RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIA 560
N SQ+ A+ A++ ++LIQGPPGTGKT ++ L+ T P + +N+
Sbjct: 336 NDSQLNALTSALEGNAITLIQGPPGTGKTHVILGLISVLLHSTIVPKVKSGGNNLG 391
>sp|Q9HCE1|MOV10_HUMAN Putative helicase MOV-10 OS=Homo sapiens GN=MOV10 PE=1 SV=2
Length = 1003
Score = 166 bits (419), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 144/477 (30%), Positives = 220/477 (46%), Gaps = 90/477 (18%)
Query: 506 NRSQVYAVKHAIQ---RPLS-LIQGPPGTGKTVTSATIVYQLVKQ-TGSPVLVCAPSNIA 560
N Q+ A++H + RP +I GPPGTGKTVT + Q+VK + +L CAPSN
Sbjct: 500 NPEQLQAMRHIVTGTTRPAPYIIFGPPGTGKTVTLVEAIKQVVKHLPKAHILACAPSNSG 559
Query: 561 VDQLTEKIHRTGLKVVRVCAKSREAIDSPVSFLALHNQIRNMEMNSE-LKKLLQLKEETG 619
D L +++ + P S L R++ M E +K + G
Sbjct: 560 ADLLCQRLR----------------VHLPSSIYRLLAPSRDIRMVPEDIKPCCNWDAKKG 603
Query: 620 ELSSADEKRYRMLKKNAEKSLLDNADVICCTCVGAGDPRLLKIKF-----HSILIDESMQ 674
E +K+ L V+ T + AG RL+ +F I IDE+
Sbjct: 604 EYVFPAKKK------------LQEYRVLITTLITAG--RLVSAQFPIDHFTHIFIDEAGH 649
Query: 675 ATEPECMVPV--ILGAK-------QLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVL 725
EPE +V + ++ K QL+L GD QLGPV+ + GL SL ERL+
Sbjct: 650 CMEPESLVAIAGLMEVKETGDPGGQLVLAGDPRQLGPVLRSPLTQKHGLGYSLLERLLTY 709
Query: 726 ---------GIRP---FRLEVQYRMHPELSKFPSNFFYEGSLQNGVCADERKLSKIDFPW 773
G P +L YR HP + P+ +YEG LQ CAD +
Sbjct: 710 NSLYKKGPDGYDPQFITKLLRNYRSHPTILDIPNQLYYEGELQ--ACADVVDRERFCRWA 767
Query: 774 PVPDK--PMLFYVTQGQEEIAGSGTSYVNRTEASNVEKITTRFI-------RCGMKPEQI 824
+P + P++F+ G++E G+ S+ N EA+ V + + + P +
Sbjct: 768 GLPRQGFPIIFHGVMGKDEREGNSPSFFNPEEAATVTSYLKLLLAPSSKKGKARLSPRSV 827
Query: 825 GVITPYEGQRAFLVQHMQY-QGSLPAKI-----YQEIEVASVDAFQGREKDLIIMSCVRS 878
GVI+PY Q V+ ++Y L ++ ++++V SV+ FQG+E+ +I++S VRS
Sbjct: 828 GVISPYRKQ----VEKIRYCITKLDRELRGLDDIKDLKVGSVEEFQGQERSVILISTVRS 883
Query: 879 NDHQ-------GIGFLNDPRRLNVALTRAKYGIIVIGNPKVLSKQPLWNNLLNFYKE 928
+ +GFL +P+R NVA+TRAK +I++GNP +L P W L F KE
Sbjct: 884 SQSFVQLDLDFNLGFLKNPKRFNVAVTRAKALLIIVGNPLLLGHDPDWKVFLEFCKE 940
>sp|Q8QHA5|DNA2_XENLA DNA replication ATP-dependent helicase/nuclease DNA2 OS=Xenopus
laevis GN=dna2 PE=1 SV=1
Length = 1053
Score = 162 bits (410), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 137/450 (30%), Positives = 216/450 (48%), Gaps = 72/450 (16%)
Query: 495 KHFSAPNLPDLNRSQVYAVKHAI-QRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLV 553
K A L LN+ Q A+K + + +LI G PGTGKT T T+V +++ G VL+
Sbjct: 617 KDIVASILRGLNKPQKQAMKRVLLSKDYTLIVGMPGTGKTTTICTLV-RILYACGFSVLL 675
Query: 554 CAPSNIAVDQLTEKIHRTGLKVVRVCAKSREAIDSPVSFLALHNQIRNMEMNSELKKLLQ 613
+ ++ AVD + K+ + + +R L + +
Sbjct: 676 TSYTHSAVDNILLKLKKFQVGFLR------------------------------LGRTQK 705
Query: 614 LKEETGELSSADEKRYRMLKK-NAEKSLLDNADVICCTCVGAGDPRLLKIKFHSILIDES 672
L + E S + + + +K +A + L ++ V+ TC+G P + +F ++DE+
Sbjct: 706 LHPDVQEFSEEEICKAKSIKSLSALEELYNSQPVVATTCMGVNHPIFTRRRFDFCIVDEA 765
Query: 673 MQATEPECMVPVILGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVLGIRPFRL 732
Q ++P C+ P+ A + +LVGDH QL P+V +A G+S+SLF+RL +L
Sbjct: 766 SQISQPICLGPLFF-ADRFVLVGDHQQLPPLVKSAEARELGMSESLFKRLERNQEAVVQL 824
Query: 733 EVQYRMHPELSKFPSNFFYEGSLQNGVCADERK-------------LSKIDFP------W 773
VQYRM+ ++ + YEG L+ CA +R L +++F W
Sbjct: 825 TVQYRMNSKIMALSNKLVYEGRLE---CASDRVSNAVVQLPHIKTLLLELEFRESQESMW 881
Query: 774 PV----PDKPMLFYVTQ---GQEEIAGSGTSYVNRTEASNVEKITTRFIRCGMKPEQIGV 826
P P+ F T+ E G S N EA V +T +++ G +P IG+
Sbjct: 882 IKDVLEPSNPVCFLNTEKIPALETEEKGGIS--NWIEAKLVFHLTKLYLKAGCRPSDIGI 939
Query: 827 ITPYEGQRAFLVQHMQYQGSLPAKIYQEIEVASVDAFQGREKDLIIMSCVRSNDHQGIG- 885
I PY Q + Y SL A +EV +VD +QGR+K +II+S VRSN +G
Sbjct: 940 IAPYRQQLKMIS---NYFNSLSA---SAVEVNTVDKYQGRDKSVIIVSFVRSNIDGKLGD 993
Query: 886 FLNDPRRLNVALTRAKYGIIVIGNPKVLSK 915
L D RRLNVALTRAK+ +I++G L++
Sbjct: 994 LLKDWRRLNVALTRAKHKLIMLGCVPTLNR 1023
>sp|Q1LXK5|M10B2_DANRE Putative helicase mov-10-B.2 OS=Danio rerio GN=mov10b.2 PE=3 SV=1
Length = 1015
Score = 160 bits (404), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 160/547 (29%), Positives = 246/547 (44%), Gaps = 97/547 (17%)
Query: 442 GFSVDFIWKSTSFDRMQLALRKFAVDDQSVSA--YIYHRLLGHNVDEVLF----RCHLPK 495
G S F+ K D+M+ + +F V+ V H + HN+ +VLF R P
Sbjct: 459 GLSKRFL-KDVYIDKMKFRV-EFTVNRIPVRLQHRAVHMAVQHNLKDVLFPMASRSLNP- 515
Query: 496 HFSAPNLPDLNR---------SQVYAVKHAIQRPLS-LIQGPPGTGKTVTSATIVYQLVK 545
S P L +R S V + +P L+ GPPGTGKTVT + Q+ K
Sbjct: 516 -VSPPALRLFDRKLEYNFQQYSAVCNIVAGTSKPAPYLVFGPPGTGKTVTIVEAIKQVEK 574
Query: 546 QT-GSPVLVCAPSNIAVDQLTEKI----HRTGLKVVRVCAKSREAIDSPVSFLALHNQIR 600
+ +L CAPSN A DQL EK+ H K+ R+ A SR D P
Sbjct: 575 NIPDAYILACAPSNSAADQLCEKLITSEHVDAHKIYRLYASSRNQKDIP----------- 623
Query: 601 NMEMNSELKKLLQLKEETGELSSADEKRYRMLKKNAEKSLLDNADVICCTCVGAGDPRLL 660
LK + EE + ++ L + ++ CT V AG RL+
Sbjct: 624 -----KILKDNCNVDEEMIDFPCKED--------------LMSYKILICTLVTAG--RLV 662
Query: 661 -----KIKFHSILIDESMQATEPECMVPV--ILGAK--QLILVGDHCQLGPVVMCKKAAR 711
+ F +DE+ A E E ++ V +L A+ QL+L GD QLGP++ A
Sbjct: 663 TGGFSEDHFTHNFVDEAGHAVESETIISVAGLLNAEKGQLVLAGDPKQLGPILRSPLAIN 722
Query: 712 AGLSQSLFERLVV------LGIRPF------RLEVQYRMHPELSKFPSNFFYEGSLQNGV 759
GL SL ERL+ G F +L + YR HP + + P+ FY+G L+
Sbjct: 723 HGLDVSLLERLMTQNDLYKRGDVEFDNRYVSKLIMNYRSHPYILEVPNRLFYDGELK--A 780
Query: 760 CADERKLSKIDFPWPVPDK--PMLFYVTQGQEEIAGSGTSYVNRTEASNVEKITTRFIRC 817
CADE ++ +P K P++F+ G++E + S+ N E + + + +
Sbjct: 781 CADEISSNQYCMWEHLPSKGFPVIFHGVPGKDERESNSPSFFNIYEINILVDYLKKLLLT 840
Query: 818 GMK-------PEQIGVITPYEGQRAFLVQHMQYQGSLPAKI-YQEIEVASVDAFQGREKD 869
K P+ IG+I PY Q + + + + ++V SV+ FQG+E+
Sbjct: 841 QPKKGISRIFPKDIGIIAPYRKQVEKIKRAIDADKDFQDYMGIDNLKVGSVEEFQGQERK 900
Query: 870 LIIMSCVRS-------NDHQGIGFLNDPRRLNVALTRAKYGIIVIGNPKVLSKQPLWNNL 922
+I++S VRS ++ IGFL + +R NVA+TRAK +I++GNP +L W
Sbjct: 901 VIMVSTVRSSVKYISLDETFNIGFLKNEKRFNVAVTRAKSLLIMVGNPMILRTDESWGRF 960
Query: 923 LNFYKEQ 929
++F E+
Sbjct: 961 IDFCLER 967
>sp|Q5ZKD7|MOV10_CHICK Putative helicase MOV-10 OS=Gallus gallus GN=MOV10 PE=2 SV=1
Length = 967
Score = 155 bits (391), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 148/485 (30%), Positives = 212/485 (43%), Gaps = 95/485 (19%)
Query: 504 DLNRSQVYAVKH---AIQRPLS-LIQGPPGTGKTVTSATIVYQLVKQTGS-----PVLVC 554
+ N Q AVKH + RP LI GPPGTGKTVT + + +KQ S +L C
Sbjct: 490 EANEEQCQAVKHIVTGMSRPAPYLIFGPPGTGKTVT----LVEAIKQVWSCFKDARILAC 545
Query: 555 APSNIAVDQLTEKI--HRTGLKVVRVCAKSREAIDSPVSFLALHNQIRNMEMNSELKKLL 612
APSN A D L +++ + + R+ A S D P N
Sbjct: 546 APSNSAADLLCQRLLTNIAPRYIYRIMASSANYKDVPADVRPCCNW-------------- 591
Query: 613 QLKEETGELSSADEKRYRMLKKNAEKSLLDNADVICCTCVGAGDPRLLKIKF-----HSI 667
EK Y K LL ++ T V AG RL+ F +
Sbjct: 592 ----------DDSEKCYVY----PSKKLLKPYRILITTLVTAG--RLVSANFPPGYFSHV 635
Query: 668 LIDESMQATEPECMVPVI-----------LGAKQLILVGDHCQLGPVVMCKKAARAGLSQ 716
IDE A EPE +V + QL+L GD QLGPV AA+ GL
Sbjct: 636 FIDECGHAVEPESVVAIAGLLTTMDPDTNPNGGQLVLAGDPQQLGPVPRSPLAAQHGLGT 695
Query: 717 SLFERLVVL---------GIRP---FRLEVQYRMHPELSKFPSNFFYEGSLQ--NGVCAD 762
SL ERL++ G P +L YR H + K P+ FY+ L+ G D
Sbjct: 696 SLLERLMLHNALYAKSDEGYNPQFVTKLLWNYRSHKAILKVPNELFYDSELKAYEGSEPD 755
Query: 763 ERKLSKIDFPWPVPDKPMLFYVTQGQEEIAGSGTSYVNRTEASNVEKITTRFIRC----- 817
R P P++F+ G++E S+ N E V + + ++
Sbjct: 756 VRNFYCTWEELPNRGVPIIFHGVCGEDEREAKSPSFFNTAEIEVVVQYLQKLLQSQGRRG 815
Query: 818 --GMKPEQIGVITPYEGQ----RAFLVQHMQYQGSLPAKIYQEIEVASVDAFQGREKDLI 871
+ P++IG+I+PY Q R + +LP +++V SV+ FQG+E+ +I
Sbjct: 816 CPTISPKEIGIISPYRKQVEKIRLAITSKDPVLRALPD--IGQLKVGSVEEFQGQERRVI 873
Query: 872 IMSCVRS-------NDHQGIGFLNDPRRLNVALTRAKYGIIVIGNPKVLSKQPLWNNLLN 924
++S VRS + +GFL +P+RLNVALTRAK +IV+GN VLSK P W+ L
Sbjct: 874 LISTVRSCSEYLQLDQTFRLGFLKNPKRLNVALTRAKALLIVVGNAAVLSKDPHWHRFLR 933
Query: 925 FYKEQ 929
+ +++
Sbjct: 934 YCRDE 938
>sp|Q5ZKG3|DNA2_CHICK DNA replication ATP-dependent helicase/nuclease DNA2 OS=Gallus
gallus GN=DNA2 PE=2 SV=2
Length = 992
Score = 152 bits (384), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 133/466 (28%), Positives = 223/466 (47%), Gaps = 95/466 (20%)
Query: 495 KHFSAPNLPDLNRSQVYAVKHAI-QRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLV 553
K A L LN+ Q A+K + R +LI G PGTGKT T +V +++ G VL+
Sbjct: 585 KEAVASILKGLNKPQKQAMKQVLLSRDYTLIVGMPGTGKTTTICALV-RILSACGFSVLL 643
Query: 554 CAPSNIAVDQLTEKIHRTGLKVVRVCAKSREAIDSPVSFLALHNQIRNMEMNSELKKLLQ 613
+ ++ AVD + K+ AK + V FL L R +++ +++K +
Sbjct: 644 TSFTHTAVDNILLKL-----------AKFK------VGFLRLG---RAQKVHPDIRKFTE 683
Query: 614 LKEETGELSSADEKRYRMLKKNAE-KSLLDNADVICCTCVGAGDPRLLKIKFHSILIDES 672
EE R + +K + + L ++ V+ C+G P ++ +F ++DE+
Sbjct: 684 --EEIC--------RSKSIKSVTDLEELYNSQPVVATACMGINHPIFVQKQFDFCIVDEA 733
Query: 673 MQATEPECMVPVILGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVLGIRPFRL 732
Q ++P C+ P + +K+ +LVGDH QL P+V +A G+S+SLF+RL +L
Sbjct: 734 SQISQPICLGP-LFCSKRFVLVGDHQQLPPLVQNSEARDLGMSESLFKRLEQNQNAVVQL 792
Query: 733 EVQYRMHPELSKFPSNFFYEGSLQNGVCADER-----------KLSKIDFP-----WPV- 775
VQYRM+ ++ + YEG L+ C E+ K+ K++F W
Sbjct: 793 TVQYRMNSKIMSLSNKLVYEGKLE---CGSEKVSNATANLPNLKMLKLEFADASKTWLKE 849
Query: 776 ---PDKPMLFYVTQGQEEIAGSGTSYVNRTEASNVEKITTRFIRCGMKPEQIGVITPYEG 832
PDKP+ F T+ + G +P IG+I+PY
Sbjct: 850 VLEPDKPVCFLNTE-----------------------------KAGCRPSDIGIISPYRH 880
Query: 833 QRAFLVQHMQYQGSLPAKIYQ-EIEVASVDAFQGREKDLIIMSCVRSNDHQGIG-FLNDP 890
Q + M A++ + +EV ++D +QGR+K +II+S VR+++ + +G L D
Sbjct: 881 QLKVITDLM-------ARLKENRVEVNTIDKYQGRDKSIIIVSFVRNSNDENLGALLKDW 933
Query: 891 RRLNVALTRAKYGIIVIGNPKVLSKQPLWNNLLNFYKEQKVLVEGP 936
RRLNVA+TRAK+ +I++G L + P LL + + ++ P
Sbjct: 934 RRLNVAITRAKHKLIMVGCVPSLRRYPPLEKLLCHLQSEAMIFNLP 979
>sp|Q6J5K9|ARMI_DROME Probable RNA helicase armi OS=Drosophila melanogaster GN=armi PE=2
SV=3
Length = 1274
Score = 147 bits (371), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 126/445 (28%), Positives = 197/445 (44%), Gaps = 65/445 (14%)
Query: 526 GPPGTGKTVTSATIVYQLVKQT-GSPVLVCAPSNIAVDQLTEKIHRTGLKVVRVCAKSRE 584
GPPG+GKT+T + QLV+ G+ +LV PSN + D +T+++ S+
Sbjct: 809 GPPGSGKTMTLIETLLQLVRNLPGARILVGTPSNSSADLVTKRL-----------IDSKA 857
Query: 585 AIDSPVSFLALHNQIRNMEMNSELKKLLQLKEETGELSSADEKRYRM---LKKNAEKSLL 641
+ L +NQ+ + E+ + G + S ++K LK + +
Sbjct: 858 LLQGDFIRLVSYNQVEKDLIPPEIMSYCA-TSDVGAVGSCEDKMMVTESGLKLRCQAKFI 916
Query: 642 DNADVICCTCVGAGDPRLLKI---KFHSILIDESMQATEPECMVPVILGAK---QLILVG 695
+ TC G+ L F +L DE+ Q TEPE MVP+++ K Q++L G
Sbjct: 917 GTHRITISTCTTLGNFLQLGFPAGHFTHVLFDEAGQCTEPETMVPIVMLTKKRSQVVLSG 976
Query: 696 DHCQLGPVVMCKKAARAGLSQSLFERLVVLGIRPFRLEVQ-------------------Y 736
D QL +V + A++ G S S ERL L P+R ++Q Y
Sbjct: 977 DPRQLQSIVTSRIASKMGFSISFLERL--LERSPYRKDLQRFPESSGYNPLVLTKLLYNY 1034
Query: 737 RMHPELSKFPSNFFYEGSL----QNGVCADERKLSKIDFPWPV-PDKP----MLFYVTQG 787
R P + S FY+ L + R LSK+ + D P FY G
Sbjct: 1035 RALPSIMSIYSRLFYDDELIPVLSEKDSRESRLLSKLRCVFESEKDIPQAHGTFFYGIIG 1094
Query: 788 QEEIAGSGTSYVNRTEASNVEKITTRFIRCGMKPEQIGVITPYEGQRAFLVQHMQYQGSL 847
+ S+ N E V +T R + +QIG+ITPY+ Q L +
Sbjct: 1095 ENRQNNDSPSWFNPQEVREVFLMTIALYRANVTADQIGIITPYQKQVKMLRSMFIGTDVV 1154
Query: 848 PAKIYQEIEVASVDAFQGREKDLIIMSCVRSNDHQ-------GIGFLNDPRRLNVALTRA 900
KI SV+ FQG+E+D+I++S VRS++ +GF+ +RLNVA++RA
Sbjct: 1155 MPKI------GSVEEFQGQERDIILISTVRSSEEILRMDARFSLGFVRCSKRLNVAVSRA 1208
Query: 901 KYGIIVIGNPKVLSKQPLWNNLLNF 925
+ +I+ GNP +L+ W L+ F
Sbjct: 1209 RAMMIIFGNPHLLAVDECWRQLILF 1233
>sp|Q9P2E3|ZNFX1_HUMAN NFX1-type zinc finger-containing protein 1 OS=Homo sapiens GN=ZNFX1
PE=1 SV=2
Length = 1918
Score = 139 bits (349), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 105/338 (31%), Positives = 166/338 (49%), Gaps = 25/338 (7%)
Query: 627 KRYRMLKKNAEKSLLDNADVICCTCVGAGDPR--LLKIKFHSILIDESMQATEPECMVPV 684
+R L+ + +L +A V+ T GA R L K++ ++++E+ + E + +
Sbjct: 961 ERMAELRLQEDLHILKDAQVVGMTTTGAAKYRQILQKVEPRIVIVEEAAEVLEAHTIATL 1020
Query: 685 ILGAKQLILVGDHCQLGPVVMCKKAARA-GLSQSLFERLVVLGIRPFRLEVQYRMHPELS 743
+ LIL+GDH QL P A+ L SLFERLV + I RL Q+RM PE++
Sbjct: 1021 SKACQHLILIGDHQQLRPSANVYDLAKNFNLEVSLFERLVKVNIPFVRLNYQHRMCPEIA 1080
Query: 744 KFPSNFFYEGSLQNGVCADERKLSKIDFPWPVPDKPMLFYVTQG-QEEIAGSGTSYVNRT 802
+ + Y+ + K+ + LF+V E+ G S+ N+
Sbjct: 1081 RLLTPHIYQDLENHPSVLKYEKIKGVS--------SNLFFVEHNFPEQEIQEGKSHQNQH 1132
Query: 803 EASNVEKITTRFIRCGMKPEQIGVITPYEGQRAFLVQHMQYQGSLPAKIYQEIEVASVDA 862
EA V ++ F+ P QI ++T Y GQ L + M PAK + + V VD
Sbjct: 1133 EAHFVVELCKYFLCQEYLPSQITILTTYTGQLFCLRKLM------PAKTFAGVRVHVVDK 1186
Query: 863 FQGREKDLIIMSCVRSNDHQGIGFLNDPRRLNVALTRAKYGIIVIGNPKVLSKQPLWNNL 922
+QG E D+I++S VRSN +GFL R+ VAL+RAK G+ IGN ++L+K PLW+ +
Sbjct: 1187 YQGEENDIILLSLVRSNQEGKVGFLQISNRICVALSRAKKGMYCIGNMQMLAKVPLWSKI 1246
Query: 923 LNFYKEQKVLVEGPL-----NNLKESLILFSKPKQYFK 955
++ +E + GP+ N E+ L SK + K
Sbjct: 1247 IHTLRENNQI--GPMLRLCCQNHPETHTLVSKASDFQK 1282
Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 69/143 (48%), Gaps = 15/143 (10%)
Query: 494 PKHFSAPNLPDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQTGS---- 549
P + + L+ SQ+ A++ A+ R L++IQGPPGTGKT IV L+
Sbjct: 587 PGQWPSKEALKLDDSQMEALQFALTRELAIIQGPPGTGKTYVGLKIVQALLTNESVWQIS 646
Query: 550 ----PVLVCAPSNIAVDQLTEKIHRT-GLKVVRVCAKSREAIDSPVSFLALHNQ---IRN 601
P+LV +N A+DQ E I+ +VRV +S I + L N+ RN
Sbjct: 647 LQKFPILVVCYTNHALDQFLEGIYNCQKTSIVRVGGRSNSEILKQFTLRELRNKREFRRN 706
Query: 602 MEMN---SELKKLLQLKEETGEL 621
+ M+ + + + Q+KE EL
Sbjct: 707 LPMHLRRAYMSIMTQMKESEQEL 729
>sp|Q8R151|ZNFX1_MOUSE NFX1-type zinc finger-containing protein 1 OS=Mus musculus GN=Znfx1
PE=2 SV=3
Length = 1909
Score = 137 bits (345), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 105/338 (31%), Positives = 170/338 (50%), Gaps = 25/338 (7%)
Query: 627 KRYRMLKKNAEKSLLDNADVICCTCVGAGDPR--LLKIKFHSILIDESMQATEPECMVPV 684
+R L+ + +L +A+V+ T GA R L +++ ++++E+ + E + +
Sbjct: 954 ERMAELRLQEDLHILKDAEVVGMTTTGAAKYRQILQQVEPRIVIVEEAAEVLEAHTIATL 1013
Query: 685 ILGAKQLILVGDHCQLGPVVMCKKAARA-GLSQSLFERLVVLGIRPFRLEVQYRMHPELS 743
+ LIL+GDH QL P A+ L SLFERLV + I RL Q+RM PE++
Sbjct: 1014 SKACQHLILIGDHQQLRPSANVYDLAKNFNLEVSLFERLVKVNIPFVRLNYQHRMRPEIA 1073
Query: 744 KFPSNFFYEGSLQNGVCADERKLSKIDFPWPVPDKPMLFYVTQG-QEEIAGSGTSYVNRT 802
+ + Y+ L+N S + + LF+V E+ G S+ N+
Sbjct: 1074 RLLTPHIYQ-DLENHP-------SVLKYEQIKGVSSNLFFVEHNFPEQEIQEGKSHQNQH 1125
Query: 803 EASNVEKITTRFIRCGMKPEQIGVITPYEGQRAFLVQHMQYQGSLPAKIYQEIEVASVDA 862
EA V ++ + P QI ++T Y GQ F ++ + +P K + I+V VD
Sbjct: 1126 EAHFVVELCQYLLCQEYLPSQITILTTYTGQ-LFCLRKL-----MPVKTFAGIKVHVVDK 1179
Query: 863 FQGREKDLIIMSCVRSNDHQGIGFLNDPRRLNVALTRAKYGIIVIGNPKVLSKQPLWNNL 922
+QG E D+I++S VRSN +GFL P R+ VAL+RAK G+ IGN ++L+K PLW+ +
Sbjct: 1180 YQGEENDIILLSLVRSNQEGKVGFLQIPNRICVALSRAKKGMYCIGNMQMLAKVPLWSRI 1239
Query: 923 LNFYKEQKVLVEGP-----LNNLKESLILFSKPKQYFK 955
++ +E + GP N E+ L SK + K
Sbjct: 1240 IHTLRENNQI--GPSLRLCCQNHPETHTLVSKASDFQK 1275
Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 74/160 (46%), Gaps = 24/160 (15%)
Query: 505 LNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATI---------VYQLVKQTGSPVLVCA 555
L+ SQ+ A++ A+ + L++IQGPPGTGKT I V+Q+ QT P+LV
Sbjct: 591 LDDSQMEALQFALTKELAIIQGPPGTGKTYVGLKIVQALLTNKSVWQINTQT-FPILVVC 649
Query: 556 PSNIAVDQLTEKIHRT-GLKVVRVCAKSREAIDSPVSFLALHNQIRNMEMNSELKKLLQL 614
+N A+DQ E I+ +VRV +S I + L N+ E ++ L +
Sbjct: 650 YTNHALDQFLEGIYGCQKTSIVRVGGRSNSEILKQFTLRELRNK-------REFRRTLPM 702
Query: 615 KEETGELSSADEKRYRMLKKNAEKSLLDNADVICCTCVGA 654
+S E K +E+ L + A + CT G
Sbjct: 703 HLRRAYMSIVTE------MKESEQKLQEGAQTLECTMHGV 736
>sp|Q9URU2|DNA2_SCHPO DNA replication ATP-dependent helicase/nuclease dna2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=dna2 PE=1 SV=2
Length = 1397
Score = 133 bits (334), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 137/453 (30%), Positives = 220/453 (48%), Gaps = 74/453 (16%)
Query: 505 LNRSQVYAVK--HAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVD 562
LN Q+ A+K HA + SLI G PGTGKT T ++++ L+ + +L + +++AVD
Sbjct: 932 LNEDQITALKKCHAAEH-YSLILGMPGTGKTTTISSLIRSLLAKKKKILLT-SFTHLAVD 989
Query: 563 QLTEKIHRTGLKVVRVCAKSREAIDSPVSFLALHNQIRNMEMNSELKKLLQLKEET--GE 620
+ K+ +VR+ + + +H L K L E T +
Sbjct: 990 NILIKLKGCDSTIVRLGSPHK-----------IH----------PLVKEFCLTEGTTFDD 1028
Query: 621 LSSADEKRYRMLKKNAEKSLLDNADVICCTCVGAGDPRLLKIKFHSILIDESMQATEPEC 680
L+S K ++ ++ C+ +G K KF +IDE+ Q P C
Sbjct: 1029 LASL-------------KHFYEDPQIVACSSLGVYHSIFNKRKFDYCIIDEASQIPLPIC 1075
Query: 681 MVPVILGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVL---GIRPFRLEVQYR 737
+ P+ L A++ +LVGDH QL P+V + ++ GLS SLF+ L + RL QYR
Sbjct: 1076 LGPLQL-AEKFVLVGDHYQLPPLVKNSRTSKDGLSLSLFKLLSEKHPEAVTTLRL--QYR 1132
Query: 738 MHPELSKFPSNFFYEGSLQNGVCADERK---LSKIDFPWPVPDKPM-LFYVTQ------- 786
M+ +++ S Y G+L G +K L K +PD L +V +
Sbjct: 1133 MNEDINSLSSELIYGGNLVCGSKTISQKKLILPKAHLSDGLPDSSSSLHWVNKLINPSHS 1192
Query: 787 ----GQEEIAG--SGTSYV--NRTEASNVEKITTRFIRCGMKPEQIGVITPYEGQRAFLV 838
++I G S T+ + N TEA +E+ + F+ G+K IG+I+ Y+ Q L
Sbjct: 1193 VIFFNTDDILGVESKTNNILENHTEAFLIEQAVSSFLERGVKQSSIGIISIYKSQVELLS 1252
Query: 839 QHMQYQGSLPAKIYQEIEVASVDAFQGREKDLIIMSCVRSNDHQGIG-FLNDPRRLNVAL 897
+++ K + EIE+ +VD +QGR+KD+I++S VRSN +G L D RLNVAL
Sbjct: 1253 KNL--------KSFTEIEINTVDRYQGRDKDIILISFVRSNSKNLVGELLRDWHRLNVAL 1304
Query: 898 TRAKYGIIVIGNPKVLSKQPLWNNLLNFYKEQK 930
+RAK I+ G+ LS + ++LL ++ K
Sbjct: 1305 SRAKVKCIMFGSLSTLSSSNIVSHLLKLLEKNK 1337
>sp|O74465|HRR1_SCHPO Helicase required for RNAi-mediated heterochromatin assembly 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=hrr1 PE=1 SV=2
Length = 999
Score = 127 bits (320), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 97/320 (30%), Positives = 166/320 (51%), Gaps = 31/320 (9%)
Query: 640 LLDNADVICCTCVGAGDPR--LLKIKFHSILIDESMQATEPECMVPVILGAKQLILVGDH 697
LL A+VI T G R L +I I+E+ E + V +QL+L+GDH
Sbjct: 679 LLRGANVIGMTTTGLNKYRDILERINPKICFIEEAADVLEGPIIPAVFPSLEQLVLIGDH 738
Query: 698 CQLGPVVMCKKAARA----GLSQSLFERLVVLGIRPFRLEVQYRMHPELSKFPSNFFYEG 753
QL P C A LS S+FERLV + RL +Q RMHP++ + S+ + +
Sbjct: 739 KQLRP--GCSTYALRQDPFNLSISMFERLVENDMEYTRLTMQRRMHPQIRRLVSSVYEDL 796
Query: 754 SLQNGVCADERKLSKIDFPWP-VPDKPML--FYVTQGQEEIAGSGTSYVNRTEASNVEKI 810
S + +++K WP +P + F++T + E S +N EA + +
Sbjct: 797 S--------DYEITKY---WPSIPGMGEIRRFFLTHSRIEDNDGFASKINLFEAQMLVQF 845
Query: 811 TTRFIRCGMKPEQIGVITPYEGQRAFLVQHMQYQGSLPAKIYQEIEVASVDAFQGREKDL 870
I G++P++I +T Y Q+ L++ + + K + I+VA+VD +QG E D+
Sbjct: 846 AVYLINNGVEPQKITCLTFYAAQKD-LIERLLSESLNREKHF--IKVATVDGYQGEENDV 902
Query: 871 IIMSCVRSNDHQGIGFLNDPRRLNVALTRAKYGIIVIGNPKVLSK-QPLWNNLLNFYKEQ 929
+++S VR+ND +GFL+ P R+ V+L+RA+ G+ + GN +++++ PLW + +N
Sbjct: 903 VLLSLVRNNDRTEVGFLSSPHRVCVSLSRARRGLFIFGNAQLVAESNPLWWDAIN----- 957
Query: 930 KVLVEGPLNNLKESLILFSK 949
++ + + L + L LF+K
Sbjct: 958 TLMNDETIQGLGDHLPLFTK 977
Score = 60.1 bits (144), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 63/111 (56%), Gaps = 14/111 (12%)
Query: 505 LNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQTGS---PVLVCAPSNIAV 561
L+ SQ+ A + + + LS+IQGPPGTGK+ + + L++ T S P+LV +N AV
Sbjct: 372 LDSSQLKAYQSMLTKRLSIIQGPPGTGKSFVTLKAIETLLENTHSHVLPILVACQTNHAV 431
Query: 562 DQLTEKIHRTGLKVVRVCAKSRE-----------AIDSPVSFLALHNQIRN 601
DQ+ ++ G V+R+ +++++ A + SF A +N+IR+
Sbjct: 432 DQILIRLLHQGASVMRLGSRTKDPEIAAVTIFQKAKHTKHSFKAAYNEIRH 482
>sp|P38859|DNA2_YEAST DNA replication ATP-dependent helicase/nuclease DNA2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=DNA2 PE=1 SV=1
Length = 1522
Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 119/453 (26%), Positives = 193/453 (42%), Gaps = 71/453 (15%)
Query: 505 LNRSQVYAVKHAIQ-RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQ 563
LN +Q A+ ++ +LI G PGTGKT A I+ LV + G VL+ + ++ AVD
Sbjct: 1052 LNLNQKEAIDKVMRAEDYALILGMPGTGKTTVIAEIIKILVSE-GKRVLLTSYTHSAVDN 1110
Query: 564 LTEKIHRTGLKVVRVCAKSREAIDSPVSFLALHNQIRNMEMNSELKKLLQLKEETGELSS 623
+ K+ T + ++R+ K + D+ + N
Sbjct: 1111 ILIKLRNTNISIMRLGMKHKVHPDT-------QKYVPNY--------------------- 1142
Query: 624 ADEKRYRMLKKNAEKSLLDNADVICCTCVGAGDP--RLLKIKFHSILIDESMQATEPECM 681
A K Y N S +++ V+ TC+G D L + F +++DE+ Q + P +
Sbjct: 1143 ASVKSY-----NDYLSKINSTSVVATTCLGINDILFTLNEKDFDYVILDEASQISMPVAL 1197
Query: 682 VPVILGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVLGIRPF-RLEVQYRMHP 740
P+ G + I+VGDH QL P+V A GL +SLF+ L +QYRM
Sbjct: 1198 GPLRYGNR-FIMVGDHYQLPPLVKNDAARLGGLEESLFKTFCEKHPESVAELTLQYRMCG 1256
Query: 741 ELSKFPSNFFYEGSLQNGVCADERKLSKIDFPWPV---------------------PDKP 779
++ + Y+ L+ G +E ++ P P P +
Sbjct: 1257 DIVTLSNFLIYDNKLKCG--NNEVFAQSLELPMPEALSRYRNESANSKQWLEDILEPTRK 1314
Query: 780 MLFYVTQGQEEIA--GSGTSYVNRTEASNVEKITTRFIRCGMKPEQIGVITPYEGQRAFL 837
++F +I + N EA + + G+ E IGV+T Y Q L
Sbjct: 1315 VVFLNYDNCPDIIEQSEKDNITNHGEAELTLQCVEGMLLSGVPCEDIGVMTLYRAQLRLL 1374
Query: 838 VQHMQYQGSLPAKIYQEIEVASVDAFQGREKDLIIMSCVRSNDH-QGIGFLNDPRRLNVA 896
+ +Y +E+ + D FQGR+K II+S VR N G L + RR+NVA
Sbjct: 1375 ------KKIFNKNVYDGLEILTADQFQGRDKKCIIISMVRRNSQLNGGALLKELRRVNVA 1428
Query: 897 LTRAKYGIIVIGNPKVLSKQPLWNNLLNFYKEQ 929
+TRAK +I+IG+ + P + +N +E+
Sbjct: 1429 MTRAKSKLIIIGSKSTIGSVPEIKSFVNLLEER 1461
>sp|Q09449|YQ12_CAEEL Uncharacterized ATP-dependent helicase C05C10.2 OS=Caenorhabditis
elegans GN=C05C10.2 PE=2 SV=1
Length = 1551
Score = 111 bits (277), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 89/283 (31%), Positives = 137/283 (48%), Gaps = 31/283 (10%)
Query: 666 SILIDESMQATEPECMVPVILGA---KQLILVGDHCQLGPVVMCKKAARAGLSQ----SL 718
++ IDE+ Q E C + +L + L+GD QL P C++ L +
Sbjct: 1205 AVQIDEASQLAE--CTLLGLLKSFNNASFGLIGDIHQLPP--YCEEGLEGKLKDFGIGNT 1260
Query: 719 FERLVVLGIRPF-RLEVQYRMHPELSKFPSNFFYEGSLQNGVCADERK--LSKIDFPWPV 775
ER + + P L YR HP+ ++ S FY+G+L +GV R ++K D WP
Sbjct: 1261 MERAIKEKMFPVCTLRNVYRCHPKTTELLSELFYDGALVSGVSELARSDFMTKRDDFWPN 1320
Query: 776 PDKPMLFYVTQGQEEIAGSGTSYVNRTEASNVEKITTRFI---RCGMKPEQIGVITPYEG 832
P PM+F G G+ TS N +E S V +I I R + P IGVI+ Y
Sbjct: 1321 PKFPMMFVNNTGASTKMGTSTS--NSSEKSIVGEIVQNLINDPRNPVNPSDIGVISFYSA 1378
Query: 833 QRAFLVQHMQYQGSLPAKIYQEIEVASVDAFQGREKDLIIMSCVRSNDHQGIGFLNDPRR 892
Q + L +H++ G ++ +VDAFQG EK++IIM S + + F+ R
Sbjct: 1379 QTSILTEHLRGSG---------VKCGTVDAFQGSEKEIIIMC---STNERISDFMQLSNR 1426
Query: 893 LNVALTRAKYGIIVIGNPKVLSKQPLWNNLLNFYKEQKVLVEG 935
LNVA++RAK I+IG+ L + W+ ++N ++ LV
Sbjct: 1427 LNVAMSRAKQVTIIIGHLDGLRRANYWSTIVNKIEQNGNLVNA 1469
>sp|Q6NYU2|HELZ_DANRE Probable helicase with zinc finger domain OS=Danio rerio GN=helz PE=2
SV=1
Length = 1860
Score = 110 bits (274), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 130/480 (27%), Positives = 205/480 (42%), Gaps = 92/480 (19%)
Query: 503 PDLNRSQVYAVKHAIQRPLS------LIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAP 556
P LN Q A+ AI PLS LI GP GTGKT T A V ++KQ S VL+C
Sbjct: 633 PRLNAKQKEAIL-AITTPLSINLPPVLIIGPYGTGKTFTLAQAVKHILKQPESRVLICTH 691
Query: 557 SNIAVD-QLTEKIH------RTGLKVVRVCAKSREAIDSPVSFLALHNQIRNMEMNSELK 609
SN A D + + +H + +RV ++R +H ++ + S
Sbjct: 692 SNSAADLYIKDYLHPYVEAGNPHARPLRVYFRNRWVK-------TVHPLVQQYCLISGAH 744
Query: 610 KLLQLKEETGELSSADEKRYRMLKKNAEKSLLDNADVICCTCVGAGDPRLLKIKFHSILI 669
Q+ + D +R+R++ L + +C + G F IL+
Sbjct: 745 FTFQMP------TRQDVERHRVVVVT-----LSTSQYLCQLDLEPG-------IFTHILL 786
Query: 670 DESMQATEPECMVPVILGAK--QLILVGDHCQLGPVVMCKKAARAGLSQSLFERLV--VL 725
DE+ QA E E ++P+ L K +++L GDH QL P V + A L SL +RL
Sbjct: 787 DEAAQAMECETIMPLALAVKSTRVVLAGDHMQLSPFVYSEFARERNLHVSLLDRLYEHYP 846
Query: 726 GIRPFRLEV--QYRMHPELSKFPSNFFYEGSLQNGVCADERKLSKIDFPWPVPDKPMLFY 783
P R+ + YR H + + S+ FYEG L A ++ DF P+ F+
Sbjct: 847 SEYPCRILLCENYRSHEAIINYTSDLFYEGKL----MASGKQPPHKDF------YPLTFF 896
Query: 784 VTQGQEEIAGSGTSYVNRTE----ASNVEKITTRFIRCGMKPEQ--IGVITPYEGQRAFL 837
+G++ + T+Y N E VE++ ++ K E+ IGV++PY Q F
Sbjct: 897 TARGEDVQEKNSTAYYNNAEVFEIVERVEEMRKKWPVSWGKLEEGSIGVVSPYADQ-VFR 955
Query: 838 VQHMQYQGSLPAKIYQEIEVASVDAFQGREKDLIIMSCVR-------------------- 877
+ + L K E+ V V QG++ ++ +S VR
Sbjct: 956 I-----RAELRKKRMSEVSVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTAIKRKEQLVE 1010
Query: 878 -SNDHQGIGFLNDPRRLNVALTRAKYGIIVIGNPKVLSK----QPLWNNLLNFYKEQKVL 932
S + GFL++ + LN A+TRA+ + V+G+P L + W ++ E L
Sbjct: 1011 DSTEDLDYGFLSNYKLLNTAITRAQSLVAVVGDPIALCSVGRCRKFWETFISICHENHSL 1070
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 363,879,527
Number of Sequences: 539616
Number of extensions: 15946740
Number of successful extensions: 46318
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 60
Number of HSP's that attempted gapping in prelim test: 45839
Number of HSP's gapped (non-prelim): 278
length of query: 959
length of database: 191,569,459
effective HSP length: 127
effective length of query: 832
effective length of database: 123,038,227
effective search space: 102367804864
effective search space used: 102367804864
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)